Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61930.t1 | RHN56335.1 | 96.1 | 127 | 3 | 1 | 1 | 127 | 78 | 202 | 1.80E-59 | 238.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61930.t1 | K4BIZ9 | 37.9 | 124 | 66 | 4 | 14 | 127 | 13 | 135 | 6.5e-13 | 75.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61930.t1 | G7K643 | 96.1 | 127 | 3 | 1 | 1 | 127 | 1 | 125 | 1.3e-59 | 238.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene61930.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61930.t1 | MTR_5g067700 | 96.063 | 127 | 3 | 1 | 1 | 127 | 1 | 125 | 1.00e-85 | 250 |
MS.gene61930.t1 | MTR_3g093830 | 47.244 | 127 | 45 | 7 | 20 | 127 | 23 | 146 | 2.88e-22 | 89.7 |
MS.gene61930.t1 | MTR_7g073430 | 38.462 | 143 | 70 | 6 | 1 | 127 | 1 | 141 | 1.00e-17 | 77.0 |
MS.gene61930.t1 | MTR_7g073380 | 35.252 | 139 | 74 | 4 | 4 | 127 | 5 | 142 | 4.07e-17 | 75.5 |
MS.gene61930.t1 | MTR_8g005750 | 35.043 | 117 | 70 | 2 | 15 | 126 | 6 | 121 | 3.39e-15 | 70.1 |
MS.gene61930.t1 | MTR_0002s1250 | 34.146 | 123 | 69 | 5 | 15 | 126 | 8 | 129 | 1.61e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61930.t1 | AT3G56400 | 35.135 | 148 | 66 | 7 | 1 | 127 | 1 | 139 | 2.30e-16 | 73.6 |
MS.gene61930.t1 | AT2G40750 | 29.825 | 171 | 72 | 9 | 2 | 127 | 4 | 171 | 2.95e-12 | 62.4 |
Find 24 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTTCTTTCTAACACTTTC+AGG | 0.226424 | 5.2:+57566615 | None:intergenic |
AATCATTCATGGAGAAAGTA+TGG | 0.268191 | 5.2:-57564070 | MS.gene61930:CDS |
CTGAAGAAGAATCTTGAGTT+TGG | 0.329999 | 5.2:+57566554 | None:intergenic |
AATGATTATCAACAATGGTT+TGG | 0.347556 | 5.2:+57564086 | None:intergenic |
AAATCATCACAACTTGAGTT+TGG | 0.348658 | 5.2:+57566450 | None:intergenic |
ATGATTATCAACAATGGTTT+GGG | 0.360761 | 5.2:+57564087 | None:intergenic |
CCATTGTTGATAATCATTCA+TGG | 0.368964 | 5.2:-57564081 | MS.gene61930:CDS |
GATAATCAAAGAACTTGTTA+AGG | 0.389804 | 5.2:-57566592 | MS.gene61930:CDS |
GGAAGAGTGCAGCTGAGATA+TGG | 0.391667 | 5.2:-57564120 | MS.gene61930:CDS |
AACAATGGTTTGGGAAACTA+TGG | 0.395929 | 5.2:+57564096 | None:intergenic |
ATTAGTGAAAGTAGAAAGAA+GGG | 0.442638 | 5.2:-57566399 | MS.gene61930:CDS |
CTTTCTTTCTAACACTTTCA+GGG | 0.446465 | 5.2:+57566616 | None:intergenic |
AATTAGTGAAAGTAGAAAGA+AGG | 0.462260 | 5.2:-57566400 | MS.gene61930:CDS |
ATAATCAAAGAACTTGTTAA+GGG | 0.491966 | 5.2:-57566591 | MS.gene61930:CDS |
GAAGAGGTTGCTACAAAAGA+AGG | 0.499456 | 5.2:-57566374 | MS.gene61930:intron |
CTTCAGAACGAGAATCCCTA+TGG | 0.526631 | 5.2:-57566537 | MS.gene61930:CDS |
AGTAGAAAGAAGGGAAGAAG+AGG | 0.527985 | 5.2:-57566390 | MS.gene61930:CDS |
GTATGGGCAGAAGAAAATCA+TGG | 0.554126 | 5.2:-57564053 | MS.gene61930:CDS |
AGCAAGATGATCAGCTCCAT+AGG | 0.557040 | 5.2:+57566521 | None:intergenic |
CCATGAATGATTATCAACAA+TGG | 0.572348 | 5.2:+57564081 | None:intergenic |
TCATGGATTCTGAATTCCCC+AGG | 0.575030 | 5.2:-57564036 | MS.gene61930:intron |
GCAAGATGATCAGCTCCATA+GGG | 0.589366 | 5.2:+57566522 | None:intergenic |
ATCATTCATGGAGAAAGTAT+GGG | 0.593517 | 5.2:-57564069 | MS.gene61930:CDS |
CGTGCTGAGATCTTTCACTG+AGG | 0.697606 | 5.2:-57566493 | MS.gene61930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAACATTTACCTA+TGG | + | chr5.2:57565795-57565814 | None:intergenic | 15.0% |
!! | AAAGTAGAATATATTCAATA+TGG | - | chr5.2:57565168-57565187 | MS.gene61930:intron | 15.0% |
!! | ATTACATTGAAAATTGAAAT+GGG | - | chr5.2:57565244-57565263 | MS.gene61930:intron | 15.0% |
!! | CTAATTATAAGCTTAAATTA+CGG | + | chr5.2:57565415-57565434 | None:intergenic | 15.0% |
!! | TAAAAAAAATAAACAAGTGA+AGG | - | chr5.2:57565083-57565102 | MS.gene61930:intron | 15.0% |
!! | TATTACATTGAAAATTGAAA+TGG | - | chr5.2:57565243-57565262 | MS.gene61930:intron | 15.0% |
!!! | AACAATATTTTATGATGATA+TGG | + | chr5.2:57566044-57566063 | None:intergenic | 15.0% |
!!! | AAGTACTATTTTATAGATTT+TGG | - | chr5.2:57566359-57566378 | MS.gene61930:intron | 15.0% |
!!! | ACTTTATTTTTTTTTAAGAG+TGG | + | chr5.2:57564707-57564726 | None:intergenic | 15.0% |
!!! | ATATTTTGATATACTTCTTT+CGG | - | chr5.2:57564533-57564552 | MS.gene61930:intron | 15.0% |
!!! | TAAGCAAAAATCAATTTTTT+AGG | - | chr5.2:57564565-57564584 | MS.gene61930:intron | 15.0% |
!! | AAAGGAAAAAAAAAATACCT+GGG | + | chr5.2:57566559-57566578 | None:intergenic | 20.0% |
!! | ACAAAAGGATAACTTATTAT+GGG | - | chr5.2:57565294-57565313 | MS.gene61930:intron | 20.0% |
!! | CATTCATTAAATGATGTATT+TGG | + | chr5.2:57564599-57564618 | None:intergenic | 20.0% |
!! | CATTTCATCAATCTTAAATA+TGG | - | chr5.2:57566242-57566261 | MS.gene61930:intron | 20.0% |
!! | TAAAGGAAAAAAAAAATACC+TGG | + | chr5.2:57566560-57566579 | None:intergenic | 20.0% |
!! | TACAAAAGGATAACTTATTA+TGG | - | chr5.2:57565293-57565312 | MS.gene61930:intron | 20.0% |
!! | TGCATGATTTATACATTATT+TGG | - | chr5.2:57566614-57566633 | MS.gene61930:CDS | 20.0% |
!! | TTAATCTCATTAATACTAGT+TGG | - | chr5.2:57565546-57565565 | MS.gene61930:intron | 20.0% |
!!! | AACTTAAGAAACTATTGATT+TGG | - | chr5.2:57564877-57564896 | MS.gene61930:intron | 20.0% |
!!! | AAGATTTGACTAGTTAAATT+TGG | + | chr5.2:57564802-57564821 | None:intergenic | 20.0% |
!!! | ATAATCAAAGAACTTGTTAA+GGG | - | chr5.2:57563984-57564003 | MS.gene61930:intron | 20.0% |
!!! | CATATTTAAGATTGATGAAA+TGG | + | chr5.2:57566244-57566263 | None:intergenic | 20.0% |
!!! | GAAGAATATCATTTTACAAA+AGG | - | chr5.2:57565279-57565298 | MS.gene61930:intron | 20.0% |
!!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr5.2:57564634-57564653 | MS.gene61930:intron | 20.0% |
! | AAACCTAAAATGTAAGCTTA+TGG | - | chr5.2:57565675-57565694 | MS.gene61930:intron | 25.0% |
! | AAATGTAATCTGATTGTATG+TGG | - | chr5.2:57566157-57566176 | MS.gene61930:intron | 25.0% |
! | AAGGAAAAAAAAAATACCTG+GGG | + | chr5.2:57566558-57566577 | None:intergenic | 25.0% |
! | AATGATTATCAACAATGGTT+TGG | + | chr5.2:57566492-57566511 | None:intergenic | 25.0% |
! | AATGTAACTTCATGATAGTT+CGG | - | chr5.2:57564960-57564979 | MS.gene61930:intron | 25.0% |
! | AATTAGTGAAAGTAGAAAGA+AGG | - | chr5.2:57564175-57564194 | MS.gene61930:intron | 25.0% |
! | AGCAAATGACTCAATTAATT+TGG | + | chr5.2:57565051-57565070 | None:intergenic | 25.0% |
! | AGGAAAAAAATTATAGCATG+TGG | + | chr5.2:57564987-57565006 | None:intergenic | 25.0% |
! | ATATATTTCTTTGCACGTAA+AGG | + | chr5.2:57566577-57566596 | None:intergenic | 25.0% |
! | ATCAGATTACATTTACATGT+AGG | + | chr5.2:57566151-57566170 | None:intergenic | 25.0% |
! | ATGATTATCAACAATGGTTT+GGG | + | chr5.2:57566491-57566510 | None:intergenic | 25.0% |
! | ATTAGTGAAAGTAGAAAGAA+GGG | - | chr5.2:57564176-57564195 | MS.gene61930:intron | 25.0% |
! | GAGGTAATTATTTACAAATG+AGG | - | chr5.2:57564659-57564678 | MS.gene61930:intron | 25.0% |
! | TGCAATGATTTCATGAAATT+GGG | - | chr5.2:57564355-57564374 | MS.gene61930:intron | 25.0% |
!! | ATGACTCAATTAATTTGGAA+CGG | + | chr5.2:57565046-57565065 | None:intergenic | 25.0% |
!! | CCTTAAAATTTTTACAGTCA+AGG | - | chr5.2:57565719-57565738 | MS.gene61930:intron | 25.0% |
!! | CCTTGACTGTAAAAATTTTA+AGG | + | chr5.2:57565722-57565741 | None:intergenic | 25.0% |
!!! | CTTTTTTATCAAGCAAACAA+AGG | + | chr5.2:57566211-57566230 | None:intergenic | 25.0% |
!!! | GATAATCAAAGAACTTGTTA+AGG | - | chr5.2:57563983-57564002 | MS.gene61930:intron | 25.0% |
!!! | GTTTTTTTTTCACATGTAGT+AGG | - | chr5.2:57564263-57564282 | MS.gene61930:intron | 25.0% |
!!! | TCAAAAACCCTTATTTTTGT+CGG | - | chr5.2:57564317-57564336 | MS.gene61930:intron | 25.0% |
!!! | TTGACTTTTTTCTATGAACT+TGG | + | chr5.2:57564301-57564320 | None:intergenic | 25.0% |
AAAATCGCCGACAAAAATAA+GGG | + | chr5.2:57564327-57564346 | None:intergenic | 30.0% | |
AAAGAAAATGAAAAACCGCT+TGG | + | chr5.2:57566318-57566337 | None:intergenic | 30.0% | |
AAATCATCACAACTTGAGTT+TGG | + | chr5.2:57564128-57564147 | None:intergenic | 30.0% | |
AAGGATAACTTATTATGGGA+TGG | - | chr5.2:57565298-57565317 | MS.gene61930:intron | 30.0% | |
AATCATTCATGGAGAAAGTA+TGG | - | chr5.2:57566505-57566524 | MS.gene61930:CDS | 30.0% | |
ACCTATGGACAATGTATAAT+TGG | + | chr5.2:57565780-57565799 | None:intergenic | 30.0% | |
ACTAGTCAAATCTTTCTCTA+TGG | - | chr5.2:57564808-57564827 | MS.gene61930:intron | 30.0% | |
ACTTTCTTTCTAACACTTTC+AGG | + | chr5.2:57563963-57563982 | None:intergenic | 30.0% | |
AGTAGTTCAGCTAATAACTA+AGG | + | chr5.2:57565989-57566008 | None:intergenic | 30.0% | |
CCATGAATGATTATCAACAA+TGG | + | chr5.2:57566497-57566516 | None:intergenic | 30.0% | |
CTAGCTATAAGGAAATTTGA+AGG | - | chr5.2:57564499-57564518 | MS.gene61930:intron | 30.0% | |
CTTTCTTTCTAACACTTTCA+GGG | + | chr5.2:57563962-57563981 | None:intergenic | 30.0% | |
GTAGTTCAGCTAATAACTAA+GGG | + | chr5.2:57565988-57566007 | None:intergenic | 30.0% | |
GTGCAATGATTTCATGAAAT+TGG | - | chr5.2:57564354-57564373 | MS.gene61930:intron | 30.0% | |
TAAGTACTCTTGTCAAGTAT+TGG | - | chr5.2:57565121-57565140 | MS.gene61930:intron | 30.0% | |
TAGATGTTTGTCACTAAAAG+TGG | - | chr5.2:57565872-57565891 | MS.gene61930:intron | 30.0% | |
TTAAGGTTGTGTCTTACTTA+TGG | + | chr5.2:57565705-57565724 | None:intergenic | 30.0% | |
TTAAGTTAATTGTTTCCCAC+AGG | - | chr5.2:57566434-57566453 | MS.gene61930:CDS | 30.0% | |
! | AATTTTTACAGTCAAGGCTT+AGG | - | chr5.2:57565725-57565744 | MS.gene61930:intron | 30.0% |
! | ATCATTCATGGAGAAAGTAT+GGG | - | chr5.2:57566506-57566525 | MS.gene61930:CDS | 30.0% |
! | GTAAAGTTGTTCTAGCTATA+AGG | - | chr5.2:57564488-57564507 | MS.gene61930:intron | 30.0% |
! | GTACCATAAGCTTACATTTT+AGG | + | chr5.2:57565681-57565700 | None:intergenic | 30.0% |
! | TTGAAATGGGTCAGATATTT+TGG | - | chr5.2:57565257-57565276 | MS.gene61930:intron | 30.0% |
!! | CCATTGTTGATAATCATTCA+TGG | - | chr5.2:57566494-57566513 | MS.gene61930:CDS | 30.0% |
AATCTGATTGTATGTGGTTC+AGG | - | chr5.2:57566163-57566182 | MS.gene61930:intron | 35.0% | |
AGAGTAAAGGAGCAATAAAG+AGG | + | chr5.2:57566092-57566111 | None:intergenic | 35.0% | |
AGCAAACTAGCAGACTATTA+CGG | - | chr5.2:57565632-57565651 | MS.gene61930:intron | 35.0% | |
ATAACTAAGGGTGAGAATCA+TGG | + | chr5.2:57565976-57565995 | None:intergenic | 35.0% | |
ATGAGTGTTTCAAATCCAAG+CGG | - | chr5.2:57566300-57566319 | MS.gene61930:intron | 35.0% | |
CAAAATCGCCGACAAAAATA+AGG | + | chr5.2:57564328-57564347 | None:intergenic | 35.0% | |
CTGAAGAAGAATCTTGAGTT+TGG | + | chr5.2:57564024-57564043 | None:intergenic | 35.0% | |
GACTAAGAGTAAACACGAAA+GGG | + | chr5.2:57566189-57566208 | None:intergenic | 35.0% | |
GCAATAAAGAGGCAATAAAG+AGG | + | chr5.2:57566081-57566100 | None:intergenic | 35.0% | |
GCCAATTATACATTGTCCAT+AGG | - | chr5.2:57565776-57565795 | MS.gene61930:intron | 35.0% | |
TCAAGGCTTAGGAAAAAGTA+TGG | - | chr5.2:57565736-57565755 | MS.gene61930:intron | 35.0% | |
TCATGAAATTGGGAACTGTA+CGG | - | chr5.2:57564365-57564384 | MS.gene61930:intron | 35.0% | |
TTGCTTATAATAGTGATCGG+AGG | - | chr5.2:57564637-57564656 | MS.gene61930:intron | 35.0% | |
! | AACAATGGTTTGGGAAACTA+TGG | + | chr5.2:57566482-57566501 | None:intergenic | 35.0% |
! | ACTCAATTAATTTGGAACGG+AGG | + | chr5.2:57565043-57565062 | None:intergenic | 35.0% |
! | GGCTTACATTTTAGACTACT+TGG | - | chr5.2:57564829-57564848 | MS.gene61930:intron | 35.0% |
! | TTACGGGCTTTCTAAAAGTT+AGG | - | chr5.2:57565649-57565668 | MS.gene61930:intron | 35.0% |
!!! | CTTATTTTTGTCGGCGATTT+TGG | - | chr5.2:57564326-57564345 | MS.gene61930:intron | 35.0% |
AGGCTATCGCTATAGAGTAA+AGG | + | chr5.2:57566105-57566124 | None:intergenic | 40.0% | |
AGTAGAAAGAAGGGAAGAAG+AGG | - | chr5.2:57564185-57564204 | MS.gene61930:intron | 40.0% | |
CTTATAATAGTGATCGGAGG+AGG | - | chr5.2:57564640-57564659 | MS.gene61930:intron | 40.0% | |
GAAGAGGTTGCTACAAAAGA+AGG | - | chr5.2:57564201-57564220 | MS.gene61930:intron | 40.0% | |
GCAAACTAGCAGACTATTAC+GGG | - | chr5.2:57565633-57565652 | MS.gene61930:intron | 40.0% | |
GGACTAAGAGTAAACACGAA+AGG | + | chr5.2:57566190-57566209 | None:intergenic | 40.0% | |
GTATGGGCAGAAGAAAATCA+TGG | - | chr5.2:57566522-57566541 | MS.gene61930:CDS | 40.0% | |
GTCTATGATATAGAAGCCCT+AGG | + | chr5.2:57566125-57566144 | None:intergenic | 40.0% | |
GTGTTGTCGAACAAGAAAGT+TGG | + | chr5.2:57566015-57566034 | None:intergenic | 40.0% | |
TACTCTATAGCGATAGCCTA+GGG | - | chr5.2:57566106-57566125 | MS.gene61930:intron | 40.0% | |
TTACTCTATAGCGATAGCCT+AGG | - | chr5.2:57566105-57566124 | MS.gene61930:intron | 40.0% | |
TTCCTCTAGACTTATCAAGC+TGG | - | chr5.2:57565002-57565021 | MS.gene61930:intron | 40.0% | |
! | ACATAGCCTTAGAATAGTCG+AGG | - | chr5.2:57565946-57565965 | MS.gene61930:intron | 40.0% |
!! | CGTATTTGGTTTGAGGTGTA+CGG | - | chr5.2:57564413-57564432 | MS.gene61930:intron | 40.0% |
AGCAAGATGATCAGCTCCAT+AGG | + | chr5.2:57564057-57564076 | None:intergenic | 45.0% | |
AGCCAGCTTGATAAGTCTAG+AGG | + | chr5.2:57565007-57565026 | None:intergenic | 45.0% | |
AGCCTTAGAATAGTCGAGGA+CGG | - | chr5.2:57565950-57565969 | MS.gene61930:intron | 45.0% | |
CTTCAGAACGAGAATCCCTA+TGG | - | chr5.2:57564038-57564057 | MS.gene61930:CDS | 45.0% | |
GCAAGATGATCAGCTCCATA+GGG | + | chr5.2:57564056-57564075 | None:intergenic | 45.0% | |
TCATGGATTCTGAATTCCCC+AGG | - | chr5.2:57566539-57566558 | MS.gene61930:CDS | 45.0% | |
TTGAGGTGTACGGACGTATT+TGG | - | chr5.2:57564423-57564442 | MS.gene61930:intron | 45.0% | |
! | CGTATTTGGTTCGAGGTGTA+CGG | - | chr5.2:57564389-57564408 | MS.gene61930:intron | 45.0% |
!! | GTACGGACGTATTTGGTTTG+AGG | - | chr5.2:57564406-57564425 | MS.gene61930:intron | 45.0% |
CGTGCTGAGATCTTTCACTG+AGG | - | chr5.2:57564082-57564101 | MS.gene61930:CDS | 50.0% | |
GGGAACTGTACGGACGTATT+TGG | - | chr5.2:57564375-57564394 | MS.gene61930:intron | 50.0% | |
TCGAGGTGTACGGACGTATT+TGG | - | chr5.2:57564399-57564418 | MS.gene61930:intron | 50.0% | |
! | GGAAGAGTGCAGCTGAGATA+TGG | - | chr5.2:57566455-57566474 | MS.gene61930:CDS | 50.0% |
! | GTACGGACGTATTTGGTTCG+AGG | - | chr5.2:57564382-57564401 | MS.gene61930:intron | 50.0% |
CTCAGCTGCACTCTTCCTGT+GGG | + | chr5.2:57566452-57566471 | None:intergenic | 55.0% | |
GGCCGTCCTCGACTATTCTA+AGG | + | chr5.2:57565955-57565974 | None:intergenic | 55.0% | |
TCTCAGCTGCACTCTTCCTG+TGG | + | chr5.2:57566453-57566472 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 57563945 | 57566652 | 57563945 | ID=MS.gene61930 |
chr5.2 | mRNA | 57563945 | 57566652 | 57563945 | ID=MS.gene61930.t1;Parent=MS.gene61930 |
chr5.2 | exon | 57566375 | 57566652 | 57566375 | ID=MS.gene61930.t1.exon1;Parent=MS.gene61930.t1 |
chr5.2 | CDS | 57566375 | 57566652 | 57566375 | ID=cds.MS.gene61930.t1;Parent=MS.gene61930.t1 |
chr5.2 | exon | 57564037 | 57564141 | 57564037 | ID=MS.gene61930.t1.exon2;Parent=MS.gene61930.t1 |
chr5.2 | CDS | 57564037 | 57564141 | 57564037 | ID=cds.MS.gene61930.t1;Parent=MS.gene61930.t1 |
chr5.2 | exon | 57563945 | 57563957 | 57563945 | ID=MS.gene61930.t1.exon3;Parent=MS.gene61930.t1 |
chr5.2 | CDS | 57563945 | 57563957 | 57563945 | ID=cds.MS.gene61930.t1;Parent=MS.gene61930.t1 |
Gene Sequence |
Protein sequence |