AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61935

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61935.t1 MTR_5g067680 93.906 361 17 3 1 360 1 357 0.0 681
MS.gene61935.t1 MTR_5g073620 54.783 115 50 2 164 276 629 743 3.79e-32 128
MS.gene61935.t1 MTR_3g090860 53.763 93 41 2 174 264 100 192 6.51e-24 101
MS.gene61935.t1 MTR_8g099350 59.459 74 30 0 201 274 128 201 1.15e-23 100
MS.gene61935.t1 MTR_7g117200 40.299 134 71 2 198 330 111 236 6.87e-23 98.2
MS.gene61935.t1 MTR_8g027860 59.091 66 27 0 205 270 136 201 4.03e-20 90.5
MS.gene61935.t1 MTR_7g073430 41.667 108 57 2 162 264 75 181 4.49e-18 83.6
MS.gene61935.t1 MTR_7g073380 37.963 108 62 1 162 264 75 182 1.70e-17 82.4
MS.gene61935.t1 MTR_8g005750 52.239 67 32 0 200 266 98 164 4.05e-17 80.9
MS.gene61935.t1 MTR_3g093830 36.975 119 60 3 161 271 82 193 5.47e-17 80.9
MS.gene61935.t1 MTR_2g016770 42.169 83 46 1 180 262 10 90 1.23e-16 78.2
MS.gene61935.t1 MTR_0002s1250 47.692 65 34 0 200 264 106 170 2.87e-16 78.2
MS.gene61935.t1 MTR_2g016770 43.210 81 44 1 182 262 4 82 3.78e-16 76.6
MS.gene61935.t1 MTR_5g043880 42.857 105 53 4 170 273 90 188 4.26e-16 77.8
MS.gene61935.t1 MTR_2g075610 50.000 64 32 0 205 268 29 92 4.56e-16 75.9
MS.gene61935.t1 MTR_2g075750 49.231 65 33 0 205 269 28 92 1.11e-15 74.7
MS.gene61935.t1 MTR_7g079010 54.688 64 24 2 205 266 141 201 1.23e-15 75.5
MS.gene61935.t1 MTR_2g075680 53.968 63 29 0 205 267 148 210 1.32e-15 77.0
MS.gene61935.t1 MTR_7g028415 56.897 58 22 1 205 262 93 147 1.74e-15 73.9
MS.gene61935.t1 MTR_7g028710 56.897 58 22 1 205 262 93 147 1.74e-15 73.9
MS.gene61935.t1 MTR_1g009613 43.182 88 44 3 178 262 233 317 1.79e-15 77.0
MS.gene61935.t1 MTR_8g092140 52.542 59 25 1 205 263 160 215 1.83e-15 75.5
MS.gene61935.t1 MTR_2g032030 39.796 98 53 2 169 262 227 322 2.61e-15 77.0
MS.gene61935.t1 MTR_4g127040 47.059 85 41 3 179 262 219 300 3.00e-15 75.9
MS.gene61935.t1 MTR_2g032030 39.796 98 53 2 169 262 227 322 3.20e-15 77.0
MS.gene61935.t1 MTR_3g009470 52.459 61 25 2 202 262 277 333 3.74e-15 77.0
MS.gene61935.t1 MTR_3g009470 53.333 60 24 2 203 262 278 333 4.62e-15 77.0
MS.gene61935.t1 MTR_4g094908 45.882 85 42 3 178 262 241 321 6.70e-15 75.1
MS.gene61935.t1 MTR_7g100510 49.275 69 29 3 195 262 179 242 9.07e-15 75.5
MS.gene61935.t1 MTR_5g067700 45.588 68 37 0 206 273 107 174 9.17e-15 73.6
MS.gene61935.t1 MTR_1g070455 45.122 82 40 3 194 273 281 359 1.62e-14 74.3
MS.gene61935.t1 MTR_2g075700 43.902 82 45 1 187 268 127 207 1.68e-14 73.9
MS.gene61935.t1 MTR_3g108960 54.237 59 25 1 204 262 313 369 1.68e-14 74.7
MS.gene61935.t1 MTR_3g095080 53.448 58 24 1 205 262 168 222 1.99e-14 72.4
MS.gene61935.t1 MTR_8g087000 47.692 65 32 1 198 262 70 132 2.08e-14 72.4
MS.gene61935.t1 MTR_8g087000 47.692 65 32 1 198 262 69 131 2.44e-14 72.4
MS.gene61935.t1 MTR_3g095080 53.448 58 24 1 205 262 144 198 2.55e-14 71.6
MS.gene61935.t1 MTR_5g091390 54.098 61 25 1 205 265 157 214 2.58e-14 73.2
MS.gene61935.t1 MTR_0117s0040 54.237 59 25 1 204 262 73 129 3.25e-14 72.0
MS.gene61935.t1 MTR_7g011820 48.387 62 28 2 201 262 224 281 3.29e-14 73.9
MS.gene61935.t1 MTR_7g011820 48.276 58 27 1 205 262 410 464 1.06e-11 66.2
MS.gene61935.t1 MTR_8g096730 50.847 59 26 1 205 263 70 125 3.54e-14 69.7
MS.gene61935.t1 MTR_7g062220 52.542 59 25 1 205 263 124 179 3.82e-14 72.8
MS.gene61935.t1 MTR_4g094588 55.172 58 23 1 205 262 178 232 4.77e-14 72.8
MS.gene61935.t1 MTR_5g016610 42.353 85 45 3 179 262 173 254 6.34e-14 71.6
MS.gene61935.t1 MTR_2g083870 40.566 106 51 4 174 274 47 145 6.72e-14 71.2
MS.gene61935.t1 MTR_5g042920 47.059 68 32 2 195 262 141 204 9.35e-14 72.4
MS.gene61935.t1 MTR_5g042920 46.552 58 28 1 205 262 320 374 6.97e-11 63.5
MS.gene61935.t1 MTR_8g007270 53.448 58 24 1 205 262 154 208 1.09e-13 70.1
MS.gene61935.t1 MTR_2g075690 49.206 63 32 0 205 267 141 203 1.65e-13 70.9
MS.gene61935.t1 MTR_7g080020 50.000 58 25 2 205 262 280 333 7.34e-13 70.1
MS.gene61935.t1 MTR_2g024350 49.153 59 28 1 204 262 7 63 8.10e-13 67.8
MS.gene61935.t1 MTR_7g109800 40.404 99 49 3 205 296 145 240 8.68e-13 68.6
MS.gene61935.t1 MTR_5g094430 48.276 58 27 1 205 262 364 418 1.12e-12 69.3
MS.gene61935.t1 MTR_3g031220 46.377 69 31 3 195 262 188 251 1.36e-12 68.6
MS.gene61935.t1 MTR_3g056100 48.276 58 27 1 205 262 402 456 1.41e-12 69.3
MS.gene61935.t1 MTR_5g094430 48.276 58 27 1 205 262 230 284 1.42e-12 68.9
MS.gene61935.t1 MTR_5g094430 48.276 58 27 1 205 262 252 306 1.44e-12 68.9
MS.gene61935.t1 MTR_3g056100 48.276 58 27 1 205 262 415 469 1.45e-12 69.3
MS.gene61935.t1 MTR_3g056100 48.276 58 27 1 205 262 258 312 1.96e-12 68.6
MS.gene61935.t1 MTR_3g031220 36.697 109 53 4 195 302 188 281 1.96e-12 68.6
MS.gene61935.t1 MTR_3g031220 46.552 58 28 1 205 262 365 419 6.97e-11 63.9
MS.gene61935.t1 MTR_3g056100 48.276 58 27 1 205 262 271 325 2.02e-12 68.6
MS.gene61935.t1 MTR_1g086790 51.724 58 25 1 205 262 158 212 2.05e-12 67.8
MS.gene61935.t1 MTR_8g069935 42.391 92 48 3 171 262 300 386 2.57e-12 68.2
MS.gene61935.t1 MTR_5g074400 48.276 58 26 2 205 262 243 296 2.82e-12 68.2
MS.gene61935.t1 MTR_5g074400 48.276 58 27 1 205 262 420 474 8.76e-12 66.6
MS.gene61935.t1 MTR_4g082580 35.106 94 50 2 199 292 139 221 3.80e-12 67.4
MS.gene61935.t1 MTR_4g082580 48.276 58 27 1 205 262 278 332 1.99e-11 65.1
MS.gene61935.t1 MTR_2g088000 53.448 58 25 1 206 263 350 405 4.24e-12 67.8
MS.gene61935.t1 MTR_7g071120 44.928 69 34 2 194 262 155 219 6.43e-12 67.0
MS.gene61935.t1 MTR_4g132430 46.575 73 27 2 206 278 128 188 7.20e-12 66.2
MS.gene61935.t1 MTR_4g132430 46.575 73 27 2 206 278 262 322 7.52e-12 66.6
MS.gene61935.t1 MTR_3g053330 50.877 57 26 1 206 262 252 306 7.54e-12 66.6
MS.gene61935.t1 MTR_2g033820 44.737 76 33 2 205 280 203 269 7.77e-12 66.2
MS.gene61935.t1 MTR_4g013260 44.828 58 29 1 205 262 184 238 7.95e-12 66.6
MS.gene61935.t1 MTR_1g013760 49.123 57 27 1 206 262 141 195 8.36e-12 65.5
MS.gene61935.t1 MTR_2g023930 52.632 57 25 1 206 262 306 360 1.02e-11 66.6
MS.gene61935.t1 MTR_7g110720 52.632 57 25 1 206 262 217 271 1.18e-11 65.9
MS.gene61935.t1 MTR_2g024380 47.458 59 29 1 204 262 250 306 1.23e-11 66.2
MS.gene61935.t1 MTR_7g110720 52.632 57 25 1 206 262 190 244 1.24e-11 65.9
MS.gene61935.t1 MTR_8g098945 52.632 57 25 1 206 262 130 184 1.45e-11 64.7
MS.gene61935.t1 MTR_8g067650 50.000 58 27 1 205 262 339 394 2.05e-11 65.5
MS.gene61935.t1 MTR_3g106060 44.615 65 34 1 198 262 131 193 2.07e-11 64.3
MS.gene61935.t1 MTR_8g067635 50.000 58 27 1 205 262 349 404 2.14e-11 65.5
MS.gene61935.t1 MTR_8g028565 52.632 57 25 1 206 262 156 210 2.43e-11 64.7
MS.gene61935.t1 MTR_4g130900 47.368 57 27 1 206 262 360 413 3.17e-11 64.7
MS.gene61935.t1 MTR_1g099600 49.123 57 27 1 206 262 186 240 4.30e-11 63.5
MS.gene61935.t1 MTR_5g097490 47.368 57 27 1 206 262 253 306 5.68e-11 63.9
MS.gene61935.t1 MTR_8g032510 43.333 60 34 0 205 264 119 178 5.72e-11 63.2
MS.gene61935.t1 MTR_7g079040 41.379 87 42 3 176 262 132 209 6.36e-11 63.2
MS.gene61935.t1 MTR_4g107970 52.632 57 25 1 206 262 179 233 8.73e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61935.t1 AT2G40740 34.659 352 148 11 1 346 11 286 1.53e-51 173
MS.gene61935.t1 AT2G40740 34.659 352 148 11 1 346 20 295 3.98e-51 172
MS.gene61935.t1 AT4G11070 52.174 92 42 2 181 271 85 175 2.97e-22 95.5
MS.gene61935.t1 AT4G11070 52.174 92 42 2 181 271 117 207 4.44e-22 95.5
MS.gene61935.t1 AT4G23810 59.420 69 28 0 201 269 154 222 6.99e-22 95.1
MS.gene61935.t1 AT5G24110 45.918 98 52 1 178 275 87 183 2.48e-21 93.2
MS.gene61935.t1 AT2G40740 42.188 128 42 5 221 346 145 242 5.25e-21 91.3
MS.gene61935.t1 AT2G46400 36.429 140 80 4 149 288 56 186 7.20e-20 89.0
MS.gene61935.t1 AT3G56400 52.174 69 33 0 205 273 120 188 3.44e-19 87.0
MS.gene61935.t1 AT1G66550 53.968 63 29 0 202 264 100 162 2.74e-18 83.6
MS.gene61935.t1 AT1G66550 53.968 63 29 0 202 264 105 167 3.46e-18 83.6
MS.gene61935.t1 AT1G66560 43.956 91 44 1 174 264 79 162 7.12e-18 82.4
MS.gene61935.t1 AT1G64000 56.897 58 22 1 205 262 114 168 6.91e-17 78.6
MS.gene61935.t1 AT2G40750 53.333 60 28 0 205 264 152 211 2.86e-16 79.3
MS.gene61935.t1 AT5G41570 56.897 58 22 1 205 262 98 152 3.12e-16 76.3
MS.gene61935.t1 AT4G31550 44.048 84 44 2 179 262 220 300 3.99e-16 78.6
MS.gene61935.t1 AT5G01900 54.237 59 27 0 206 264 111 169 4.45e-16 77.8
MS.gene61935.t1 AT4G31550 48.235 85 40 3 178 262 221 301 5.01e-16 78.6
MS.gene61935.t1 AT2G30590 32.639 144 89 5 123 262 229 368 8.79e-16 78.2
MS.gene61935.t1 AT1G29280 44.086 93 41 4 176 262 42 129 1.12e-15 76.6
MS.gene61935.t1 AT2G24570 46.667 90 44 3 178 267 218 303 1.13e-15 77.4
MS.gene61935.t1 AT2G46130 55.172 58 23 1 205 262 30 84 1.39e-15 72.4
MS.gene61935.t1 AT2G23320 41.176 85 46 3 179 262 214 295 1.87e-15 76.6
MS.gene61935.t1 AT1G69310 49.254 67 30 2 205 271 147 209 2.80e-15 75.9
MS.gene61935.t1 AT1G69310 49.254 67 30 2 205 271 147 209 2.80e-15 75.9
MS.gene61935.t1 AT1G69310 49.254 67 30 2 205 271 147 209 2.80e-15 75.9
MS.gene61935.t1 AT4G26440 48.052 77 27 3 203 279 176 239 3.95e-15 77.0
MS.gene61935.t1 AT5G45260 31.343 134 88 1 133 262 1132 1265 6.36e-15 77.0
MS.gene61935.t1 AT4G18170 27.925 265 158 9 76 338 59 292 9.23e-15 74.7
MS.gene61935.t1 AT5G28650 45.882 85 42 3 179 262 236 317 9.58e-15 74.7
MS.gene61935.t1 AT4G39410 42.857 84 38 2 205 281 223 303 1.15e-14 74.3
MS.gene61935.t1 AT1G66600 36.134 119 55 3 146 264 65 162 1.55e-14 72.8
MS.gene61935.t1 AT2G34830 43.023 86 43 2 181 262 196 279 1.59e-14 74.7
MS.gene61935.t1 AT2G34830 43.023 86 43 2 181 262 187 270 1.60e-14 74.7
MS.gene61935.t1 AT5G22570 49.153 59 30 0 206 264 111 169 1.94e-14 73.6
MS.gene61935.t1 AT3G04670 41.237 97 53 3 179 274 236 329 3.21e-14 73.2
MS.gene61935.t1 AT2G37260 43.925 107 53 3 173 279 321 420 3.42e-14 73.9
MS.gene61935.t1 AT2G37260 54.386 57 22 2 206 262 166 218 1.83e-13 71.6
MS.gene61935.t1 AT3G58710 43.478 92 43 4 176 262 39 126 3.87e-14 72.4
MS.gene61935.t1 AT2G37260 43.925 107 53 3 173 279 241 340 4.11e-14 73.2
MS.gene61935.t1 AT2G37260 54.386 57 22 2 206 262 86 138 1.93e-13 71.2
MS.gene61935.t1 AT2G44745 53.448 58 24 1 205 262 145 199 4.15e-14 71.2
MS.gene61935.t1 AT2G37260 43.925 107 53 3 173 279 239 338 4.29e-14 73.2
MS.gene61935.t1 AT2G37260 54.386 57 22 2 206 262 84 136 2.02e-13 70.9
MS.gene61935.t1 AT1G29860 55.172 58 23 1 205 262 136 190 5.15e-14 72.0
MS.gene61935.t1 AT1G80590 50.847 59 29 0 206 264 86 144 6.69e-14 70.9
MS.gene61935.t1 AT1G30650 43.023 86 43 2 181 262 189 272 6.86e-14 72.8
MS.gene61935.t1 AT2G03340 48.529 68 29 3 196 262 241 303 8.43e-14 72.8
MS.gene61935.t1 AT2G03340 40.964 83 46 1 205 287 415 494 2.71e-11 65.1
MS.gene61935.t1 AT3G01080 48.387 62 28 2 201 262 201 258 8.46e-14 72.0
MS.gene61935.t1 AT3G58710 40.426 94 48 3 174 262 35 125 1.08e-13 70.9
MS.gene61935.t1 AT3G01080 48.387 62 28 2 201 262 201 258 2.71e-13 71.2
MS.gene61935.t1 AT5G46350 51.724 58 25 1 205 262 183 237 3.00e-13 70.5
MS.gene61935.t1 AT5G13080 53.448 58 24 1 205 262 67 121 3.55e-13 66.6
MS.gene61935.t1 AT3G01080 48.387 62 28 2 201 262 163 220 4.12e-13 70.5
MS.gene61935.t1 AT2G38470 43.182 88 40 4 181 262 154 237 4.15e-13 70.9
MS.gene61935.t1 AT1G13960 45.833 72 33 3 192 262 216 282 4.35e-13 70.9
MS.gene61935.t1 AT1G13960 46.552 58 28 1 205 262 409 463 9.21e-11 63.5
MS.gene61935.t1 AT1G13960 45.833 72 33 3 192 262 63 129 8.25e-13 69.3
MS.gene61935.t1 AT4G24240 41.758 91 49 3 173 262 249 336 9.08e-13 68.9
MS.gene61935.t1 AT5G52830 48.780 82 34 3 181 262 147 220 1.07e-12 68.9
MS.gene61935.t1 AT5G26170 46.552 58 28 1 205 262 113 167 1.13e-12 66.2
MS.gene61935.t1 AT4G31800 43.284 67 36 1 196 262 102 166 1.78e-12 67.0
MS.gene61935.t1 AT5G56270 45.455 77 29 3 203 279 271 334 1.96e-12 68.9
MS.gene61935.t1 AT5G49520 50.000 58 26 1 205 262 221 275 2.03e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 341 395 2.06e-12 68.6
MS.gene61935.t1 AT4G23550 52.632 57 25 1 206 262 141 195 2.13e-12 67.8
MS.gene61935.t1 AT4G04450 42.045 88 38 3 206 293 199 273 2.22e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 381 435 2.28e-12 68.6
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 205 259 2.30e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 205 259 2.30e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 205 259 2.30e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 205 259 2.30e-12 68.2
MS.gene61935.t1 AT4G26640 48.276 58 27 1 205 262 309 363 2.45e-12 68.2
MS.gene61935.t1 AT4G31800 43.284 67 36 1 196 262 167 231 2.52e-12 67.4
MS.gene61935.t1 AT4G04450 42.045 88 38 3 206 293 293 367 3.09e-12 68.2
MS.gene61935.t1 AT4G30935 42.857 77 40 2 206 282 332 404 3.72e-12 67.8
MS.gene61935.t1 AT2G47260 38.462 91 53 1 180 270 149 236 7.41e-12 66.2
MS.gene61935.t1 AT4G01250 38.554 83 44 2 180 262 108 183 1.15e-11 65.5
MS.gene61935.t1 AT1G62300 52.632 57 25 1 206 262 313 367 1.81e-11 65.9
MS.gene61935.t1 AT4G01720 52.632 57 25 1 206 262 240 294 2.62e-11 65.1
MS.gene61935.t1 AT2G30250 52.632 57 24 1 206 262 329 382 3.39e-11 64.7
MS.gene61935.t1 AT5G43290 49.153 59 27 1 205 263 114 169 3.42e-11 63.5
MS.gene61935.t1 AT5G45050 42.353 85 42 2 178 262 1158 1235 4.02e-11 65.1
MS.gene61935.t1 AT5G45050 42.353 85 42 2 178 262 1130 1207 4.15e-11 65.1
MS.gene61935.t1 AT1G55600 44.776 67 34 1 196 262 298 361 4.30e-11 64.3
MS.gene61935.t1 AT4G22070 52.632 57 25 1 206 262 298 352 4.55e-11 64.7
MS.gene61935.t1 AT4G22070 52.632 57 25 1 206 262 298 352 4.55e-11 64.7
MS.gene61935.t1 AT4G22070 52.632 57 25 1 206 262 298 352 4.55e-11 64.7
MS.gene61935.t1 AT4G22070 52.632 57 25 1 206 262 298 352 4.55e-11 64.7
MS.gene61935.t1 AT5G45050 42.353 85 42 2 178 262 1019 1096 4.58e-11 65.1
MS.gene61935.t1 AT2G04880 47.368 57 27 1 206 262 284 337 5.00e-11 64.3
MS.gene61935.t1 AT2G04880 51.724 58 24 2 205 262 111 164 9.80e-11 63.2
MS.gene61935.t1 AT2G04880 47.368 57 27 1 206 262 308 361 5.35e-11 64.3
MS.gene61935.t1 AT2G04880 51.724 58 24 2 205 262 111 164 9.01e-11 63.5
MS.gene61935.t1 AT2G25000 37.500 80 48 1 183 262 81 158 5.94e-11 62.4
MS.gene61935.t1 AT2G25000 37.500 80 48 1 183 262 81 158 5.94e-11 62.4
MS.gene61935.t1 AT2G25000 37.500 80 48 1 183 262 103 180 8.90e-11 62.0

Find 96 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATGAGAATAGCATTTC+AGG 0.221599 5.2:-57520606 None:intergenic
AAGTCTTTGCACTTGCTTCT+TGG 0.236235 5.2:-57523402 None:intergenic
TATGTTACTTCAACTATGTT+AGG 0.240903 5.2:-57523434 None:intergenic
CATCATCATTACTCTTTCTT+TGG 0.259697 5.2:-57520658 None:intergenic
GATAGATCAAAAGGGTTAGA+AGG 0.266264 5.2:+57520987 MS.gene61935:CDS
GGCTTTACTTGGAGAAAATA+TGG 0.298786 5.2:+57522701 MS.gene61935:CDS
TGAAATGGGTGGGAGGGATA+TGG 0.320333 5.2:+57520956 MS.gene61935:CDS
AACTTTGAGGATTGGTGAAA+TGG 0.320492 5.2:+57520941 MS.gene61935:CDS
TGATTATCCGGTGGCCGATA+TGG 0.327197 5.2:+57523643 MS.gene61935:CDS
AAAACTCAACATGCTCAAAT+TGG 0.341836 5.2:+57520768 MS.gene61935:CDS
TCACCGCAGGTGGCCACCCT+TGG 0.347403 5.2:-57523562 None:intergenic
CTTTGCACTTGCTTCTTGGC+TGG 0.354716 5.2:-57523398 None:intergenic
TTCAGGGTGGTTGGCCATGT+TGG 0.368022 5.2:-57520589 None:intergenic
CCTTTATCAGAAGTTACTAT+AGG 0.370143 5.2:+57523348 MS.gene61935:intron
TAGTAGCAGTGGCAATAGTA+TGG 0.375087 5.2:+57523688 MS.gene61935:CDS
CTCCAAGTAAAGCCATCTTC+TGG 0.382520 5.2:-57522692 None:intergenic
ACGTTCAGTTGTTAAGGTCT+AGG 0.382607 5.2:+57520916 MS.gene61935:CDS
ATTAGAACACTCACATCAAA+AGG 0.383819 5.2:-57520855 None:intergenic
ATTTGAGCAAAGGAATTAGA+AGG 0.385061 5.2:-57520720 None:intergenic
GAAGGTTTAGATAGATCAAA+AGG 0.386309 5.2:+57520978 MS.gene61935:CDS
TTCAATGCATGCACATTCAA+TGG 0.387023 5.2:+57520809 MS.gene61935:CDS
TAGCAGCAGGAAGAATGATT+TGG 0.389860 5.2:+57522616 MS.gene61935:intron
CACCAGAAGATGGCTTTACT+TGG 0.405190 5.2:+57522690 MS.gene61935:CDS
TCAGGGTGGTTGGCCATGTT+GGG 0.411278 5.2:-57520588 None:intergenic
AAGATTCGGCATTGATTATC+CGG 0.412157 5.2:+57523631 MS.gene61935:CDS
CTGCGGTGAACCACGACCTC+AGG 0.426028 5.2:+57523576 MS.gene61935:CDS
GTGTTTCCAATCTGAGGTGC+TGG 0.434455 5.2:-57522659 None:intergenic
GGAAGAAATGGCAGTTTCAA+TGG 0.437250 5.2:-57523540 None:intergenic
ATGTTACTTCAACTATGTTA+GGG 0.440557 5.2:-57523433 None:intergenic
CATGCTCAAATTGGTGGAAG+TGG 0.441412 5.2:+57520777 MS.gene61935:CDS
CGTTCAGTTGTTAAGGTCTA+GGG 0.444913 5.2:+57520917 MS.gene61935:CDS
CACCGCAGGTGGCCACCCTT+GGG 0.445492 5.2:-57523561 None:intergenic
CTAATGTTCACAAGTAGGTT+TGG 0.447789 5.2:-57523515 None:intergenic
ACTTTGAGGATTGGTGAAAT+GGG 0.450200 5.2:+57520942 MS.gene61935:CDS
GAACATTACATCGGCCATAT+CGG 0.452060 5.2:-57523657 None:intergenic
ACAAGTAGGTTTGGTGGTGG+TGG 0.452659 5.2:-57523506 None:intergenic
ATATGATGATGGTGCTGTTA+AGG 0.457432 5.2:-57523483 None:intergenic
TGGCCACCCTTGGGAAGAAA+TGG 0.460403 5.2:-57523552 None:intergenic
GAAATTCATGACTTCTTCCA+TGG 0.461625 5.2:-57520520 None:intergenic
GGTGGTGGTGGATATGATGA+TGG 0.483740 5.2:-57523494 None:intergenic
CTGAGGTCGTGGTTCACCGC+AGG 0.489237 5.2:-57523575 None:intergenic
GGACCCTCTACTTCAAGATT+CGG 0.492644 5.2:+57523617 MS.gene61935:CDS
CGTCTCCGCCCCTGAGGTCG+TGG 0.495381 5.2:-57523586 None:intergenic
CTCAGGGGCGGAGACGGTAC+TGG 0.503754 5.2:+57523593 MS.gene61935:CDS
TCTAGGGGAACTTTGAGGAT+TGG 0.506422 5.2:+57520933 MS.gene61935:CDS
ATGCATCCAGCACCTCAGAT+TGG 0.509798 5.2:+57522653 MS.gene61935:CDS
TAAGGTCTAGGGGAACTTTG+AGG 0.511706 5.2:+57520928 MS.gene61935:CDS
GCGGTGACGTTCAGTTGTTA+AGG 0.512945 5.2:+57520910 MS.gene61935:CDS
CACGACCTCAGGGGCGGAGA+CGG 0.513045 5.2:+57523587 MS.gene61935:CDS
TTCCCAAGGGTGGCCACCTG+CGG 0.515927 5.2:+57523559 MS.gene61935:CDS
TGGATGAGAATAGCATTTCA+GGG 0.524108 5.2:-57520605 None:intergenic
ATAGTTGAAGTAACATATAG+AGG 0.529154 5.2:+57523440 MS.gene61935:CDS
ATCTCAGTGTTTCCAATCTG+AGG 0.531039 5.2:-57522665 None:intergenic
ACTCAACATGCTCAAATTGG+TGG 0.531204 5.2:+57520771 MS.gene61935:CDS
ACTGAGATGCCACCAGAAGA+TGG 0.534882 5.2:+57522680 MS.gene61935:CDS
GAATAGCATTTCAGGGTGGT+TGG 0.535922 5.2:-57520598 None:intergenic
ATGATAAGTGGCGGTGGTGA+TGG 0.538282 5.2:+57520888 MS.gene61935:CDS
AAGGTTTAGATAGATCAAAA+GGG 0.540645 5.2:+57520979 MS.gene61935:CDS
ATTGAGAATAAGATGATAAG+TGG 0.540967 5.2:+57520876 MS.gene61935:CDS
GAAACTGCCATTTCTTCCCA+AGG 0.545394 5.2:+57523545 MS.gene61935:CDS
TGGTACTAATGTTCACAAGT+AGG 0.547624 5.2:-57523520 None:intergenic
TGCGGTGAACCACGACCTCA+GGG 0.552440 5.2:+57523577 MS.gene61935:CDS
AGGTCGTGGTTCACCGCAGG+TGG 0.554696 5.2:-57523572 None:intergenic
TACTTGGCCGCAAGCACCCA+AGG 0.555851 5.2:+57522735 MS.gene61935:CDS
ATGTTCACAAGTAGGTTTGG+TGG 0.557977 5.2:-57523512 None:intergenic
TAATTTACCTTGGGTGCTTG+CGG 0.559902 5.2:-57522742 None:intergenic
TTGAGGATTGGTGAAATGGG+TGG 0.562645 5.2:+57520945 MS.gene61935:CDS
AGGGGCGGAGACGGTACTGG+TGG 0.562847 5.2:+57523596 MS.gene61935:CDS
TGAGGATTGGTGAAATGGGT+GGG 0.564470 5.2:+57520946 MS.gene61935:CDS
GGCCGATGTAATGTTCAACT+CGG 0.582893 5.2:+57523664 MS.gene61935:CDS
AAACTGCCATTTCTTCCCAA+GGG 0.586934 5.2:+57523546 MS.gene61935:CDS
GGATTGGTGAAATGGGTGGG+AGG 0.593788 5.2:+57520949 MS.gene61935:CDS
ATGCCGAATCTTGAAGTAGA+GGG 0.595101 5.2:-57523620 None:intergenic
TTAGAACACTCACATCAAAA+GGG 0.595617 5.2:-57520854 None:intergenic
CTGCCATTTCTTCCCAAGGG+TGG 0.604947 5.2:+57523549 MS.gene61935:CDS
TTCAACTCGGGTAGTAGCAG+TGG 0.607187 5.2:+57523677 MS.gene61935:CDS
GATTGGTGAAATGGGTGGGA+GGG 0.607995 5.2:+57520950 MS.gene61935:CDS
ATGAGACAGAATTTGAGCAA+AGG 0.616039 5.2:-57520730 None:intergenic
AGATAAAGGTGAACCTGATG+AGG 0.619424 5.2:+57523733 MS.gene61935:CDS
TTCACAAGTAGGTTTGGTGG+TGG 0.620288 5.2:-57523509 None:intergenic
GCCGATGTAATGTTCAACTC+GGG 0.623899 5.2:+57523665 MS.gene61935:CDS
AATGCCGAATCTTGAAGTAG+AGG 0.627530 5.2:-57523621 None:intergenic
CAAGTAAAGCCATCTTCTGG+TGG 0.629125 5.2:-57522689 None:intergenic
GAGAATAAGATGATAAGTGG+CGG 0.650628 5.2:+57520879 MS.gene61935:CDS
AATAAGATGATAAGTGGCGG+TGG 0.651861 5.2:+57520882 MS.gene61935:CDS
ACATCGGCCATATCGGCCAC+CGG 0.656162 5.2:-57523650 None:intergenic
GTGAACCACGACCTCAGGGG+CGG 0.657610 5.2:+57523581 MS.gene61935:CDS
ATAAGTGGCGGTGGTGATGG+CGG 0.661391 5.2:+57520891 MS.gene61935:CDS
TGAACTAGAACTACCCAACA+TGG 0.663075 5.2:+57520575 MS.gene61935:CDS
GTTCAGTTGTTAAGGTCTAG+GGG 0.665415 5.2:+57520918 MS.gene61935:CDS
ATTCGGCATTGATTATCCGG+TGG 0.666772 5.2:+57523634 MS.gene61935:CDS
ATGGGTGGGAGGGATATGGA+AGG 0.678067 5.2:+57520960 MS.gene61935:CDS
CAGTACCGTCTCCGCCCCTG+AGG 0.681574 5.2:-57523592 None:intergenic
ACCCGAGTTGAACATTACAT+CGG 0.690614 5.2:-57523666 None:intergenic
GCGGTGAACCACGACCTCAG+GGG 0.741552 5.2:+57523578 MS.gene61935:CDS
ATGAGAATAGCATTTCAGGG+TGG 0.763743 5.2:-57520602 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTGATTTGAATTTTTT+TGG + chr5.2:57522147-57522166 MS.gene61935:intron 10.0%
!!! GTTTTTATTATATAATTTGT+TGG + chr5.2:57523305-57523324 MS.gene61935:intron 10.0%
!!! TTCAAATCAATTTTTTTTTA+TGG - chr5.2:57522141-57522160 None:intergenic 10.0%
!!! TTTTACATAAAATTATAAGT+AGG + chr5.2:57522517-57522536 MS.gene61935:intron 10.0%
!! AAATATTTAACAAGTAATCA+AGG - chr5.2:57523098-57523117 None:intergenic 15.0%
!! AATTATTGTTAATTTACCTT+GGG - chr5.2:57522754-57522773 None:intergenic 15.0%
!! AGAATTGTACTTTATAATAT+AGG + chr5.2:57522778-57522797 MS.gene61935:intron 15.0%
!! GAATTGTACTTTATAATATA+GGG + chr5.2:57522779-57522798 MS.gene61935:intron 15.0%
!! TAATTATTGTTAATTTACCT+TGG - chr5.2:57522755-57522774 None:intergenic 15.0%
!! TCAAAGTTTCATATATTAAA+TGG + chr5.2:57521132-57521151 MS.gene61935:intron 15.0%
!!! AGAAAAGTGAATTTTTTTTT+TGG - chr5.2:57522430-57522449 None:intergenic 15.0%
!!! TCACTAGTTAATTATTTTAA+TGG + chr5.2:57522326-57522345 MS.gene61935:intron 15.0%
!!! TGTTTATTTTTTAAACATCT+TGG + chr5.2:57523283-57523302 MS.gene61935:intron 15.0%
!!! TTATATACATACCATTTTTT+TGG - chr5.2:57521050-57521069 None:intergenic 15.0%
!! AAAAATCTTATGGAAATGAT+TGG - chr5.2:57521642-57521661 None:intergenic 20.0%
!! AAATTTATATATGCAAGATC+CGG + chr5.2:57522377-57522396 MS.gene61935:intron 20.0%
!! AAGAAATATTCTTAGAAGAA+AGG - chr5.2:57522887-57522906 None:intergenic 20.0%
!! AATAGTTTGACACAATTATT+AGG + chr5.2:57522454-57522473 MS.gene61935:intron 20.0%
!! CAATTATTAGGAAGTTAATA+TGG + chr5.2:57522466-57522485 MS.gene61935:intron 20.0%
!! TTTCTTTCAATTATTGTTGT+TGG - chr5.2:57521862-57521881 None:intergenic 20.0%
!!! AAAGTGAATTTTTTTTTTGG+TGG - chr5.2:57522427-57522446 None:intergenic 20.0%
!!! ATTTCTAAGGTATTGAATTT+AGG + chr5.2:57521241-57521260 MS.gene61935:intron 20.0%
!!! TTTCTTCTAAGAATATTTCT+TGG + chr5.2:57522886-57522905 MS.gene61935:intron 20.0%
!!! TTTTATCTAACTGAAGATAA+AGG + chr5.2:57523719-57523738 MS.gene61935:CDS 20.0%
! AAGGTTTAGATAGATCAAAA+GGG + chr5.2:57520979-57520998 MS.gene61935:CDS 25.0%
! AATTTATATATGCAAGATCC+GGG + chr5.2:57522378-57522397 MS.gene61935:intron 25.0%
! ATAATGTGAAAATCCTAAGT+AGG - chr5.2:57521598-57521617 None:intergenic 25.0%
! ATACATCAAAGTTGAAAGTT+AGG - chr5.2:57521483-57521502 None:intergenic 25.0%
! ATAGTTGAAGTAACATATAG+AGG + chr5.2:57523440-57523459 MS.gene61935:CDS 25.0%
! ATGTTATTGAATCAAAGTCT+TGG + chr5.2:57521178-57521197 MS.gene61935:intron 25.0%
! ATTCAATAACATAGATTGTG+AGG - chr5.2:57521170-57521189 None:intergenic 25.0%
! ATTGAGAATAAGATGATAAG+TGG + chr5.2:57520876-57520895 MS.gene61935:CDS 25.0%
! GTATAATTCAGTTGTTAGAT+TGG + chr5.2:57522488-57522507 MS.gene61935:intron 25.0%
! TAAAAGTAGAGATTGAAATG+AGG + chr5.2:57521704-57521723 MS.gene61935:intron 25.0%
! TAATGTGAAAATCCTAAGTA+GGG - chr5.2:57521597-57521616 None:intergenic 25.0%
! TGAAACTTTCAAACTCTTTA+TGG - chr5.2:57522814-57522833 None:intergenic 25.0%
! TTGCAATTCAACTGAAATTA+AGG - chr5.2:57521411-57521430 None:intergenic 25.0%
!! ATGTAAGATAGAATTTTCCA+TGG + chr5.2:57521982-57522001 MS.gene61935:intron 25.0%
!! ATGTTACTTCAACTATGTTA+GGG - chr5.2:57523436-57523455 None:intergenic 25.0%
!! ATTCTTAGAAGAAAGGTATA+AGG - chr5.2:57522880-57522899 None:intergenic 25.0%
!! CTGGACACAAATATAATTTT+TGG - chr5.2:57523382-57523401 None:intergenic 25.0%
!! TAGGGTGAAAATTTTCATTA+TGG - chr5.2:57521579-57521598 None:intergenic 25.0%
!! TATGTTACTTCAACTATGTT+AGG - chr5.2:57523437-57523456 None:intergenic 25.0%
!! TCCATAAGATTTTTACTAGA+GGG + chr5.2:57521648-57521667 MS.gene61935:intron 25.0%
!! TTCCATAAGATTTTTACTAG+AGG + chr5.2:57521647-57521666 MS.gene61935:intron 25.0%
!!! CAACACAAAGATTATTTCTA+AGG + chr5.2:57521228-57521247 MS.gene61935:intron 25.0%
!!! CATATTTGGGTTTTAGTTTA+TGG + chr5.2:57521321-57521340 MS.gene61935:intron 25.0%
!!! TTTTTTGGTGTTTGCTATTT+TGG + chr5.2:57522162-57522181 MS.gene61935:intron 25.0%
AAAACTCAACATGCTCAAAT+TGG + chr5.2:57520768-57520787 MS.gene61935:CDS 30.0%
AACACACCAATAATAACGTA+CGG - chr5.2:57521935-57521954 None:intergenic 30.0%
ACCCAAATATGTAAATTACC+CGG - chr5.2:57521312-57521331 None:intergenic 30.0%
ACCGGGTAATTTACATATTT+GGG + chr5.2:57521308-57521327 MS.gene61935:intron 30.0%
AGATTGAAATGAGGTTAACT+TGG + chr5.2:57521713-57521732 MS.gene61935:intron 30.0%
ATTAGAACACTCACATCAAA+AGG - chr5.2:57520858-57520877 None:intergenic 30.0%
ATTTATATATGCAAGATCCG+GGG + chr5.2:57522379-57522398 MS.gene61935:intron 30.0%
ATTTGAGCAAAGGAATTAGA+AGG - chr5.2:57520723-57520742 None:intergenic 30.0%
CATCATCATTACTCTTTCTT+TGG - chr5.2:57520661-57520680 None:intergenic 30.0%
CATGGTCTTTCTTAGTAATT+AGG + chr5.2:57522000-57522019 MS.gene61935:intron 30.0%
CCTATAGTAACTTCTGATAA+AGG - chr5.2:57523351-57523370 None:intergenic 30.0%
CCTTTATCAGAAGTTACTAT+AGG + chr5.2:57523348-57523367 MS.gene61935:intron 30.0%
CTAATTACTAAGAAAGACCA+TGG - chr5.2:57522002-57522021 None:intergenic 30.0%
GAAGGTTTAGATAGATCAAA+AGG + chr5.2:57520978-57520997 MS.gene61935:CDS 30.0%
GATTACTCAATGTTTGTACT+AGG - chr5.2:57521684-57521703 None:intergenic 30.0%
TAGTTTACATGACCAAAACA+AGG + chr5.2:57522073-57522092 MS.gene61935:intron 30.0%
TATGGCCAAAAAGAAATACT+TGG + chr5.2:57522719-57522738 MS.gene61935:CDS 30.0%
TCCCTCTAGTAAAAATCTTA+TGG - chr5.2:57521652-57521671 None:intergenic 30.0%
TCTACAATTGTGACAAAAAC+AGG - chr5.2:57521821-57521840 None:intergenic 30.0%
TGTGAATGAGTCAATTCATA+GGG - chr5.2:57522944-57522963 None:intergenic 30.0%
TTAGAACACTCACATCAAAA+GGG - chr5.2:57520857-57520876 None:intergenic 30.0%
! ACAAAAGTGAAATGCTTTTG+AGG + chr5.2:57521886-57521905 MS.gene61935:intron 30.0%
! AGGTCTTTGCTATAGTATTT+AGG + chr5.2:57522093-57522112 MS.gene61935:intron 30.0%
! CTTTCAATTATTGTTGTTGG+CGG - chr5.2:57521859-57521878 None:intergenic 30.0%
! GGTATTGAAAGCTTTAGTTT+AGG + chr5.2:57521907-57521926 MS.gene61935:intron 30.0%
! TCTGTAAGATTTTCACTAGA+GGG + chr5.2:57521550-57521569 MS.gene61935:intron 30.0%
! TGAAAATTTTCACCCTACTT+AGG + chr5.2:57521582-57521601 MS.gene61935:intron 30.0%
! TTCTGTAAGATTTTCACTAG+AGG + chr5.2:57521549-57521568 MS.gene61935:intron 30.0%
!! AAGAAAGGTATAAGGTTTTC+TGG - chr5.2:57522872-57522891 None:intergenic 30.0%
!!! GGGTTTTAGTTTATGGTTAT+AGG + chr5.2:57521328-57521347 MS.gene61935:intron 30.0%
!!! GTGAATTTTTTTTTTGGTGG+TGG - chr5.2:57522424-57522443 None:intergenic 30.0%
!!! TACCATTTTTTTGGTCTTGA+AGG - chr5.2:57521041-57521060 None:intergenic 30.0%
!!! TGCTTTTTCTACATCATCAA+TGG - chr5.2:57520628-57520647 None:intergenic 30.0%
AATTAGGCAACAAGTCATCA+TGG + chr5.2:57522016-57522035 MS.gene61935:intron 35.0%
ATATGTAAATTACCCGGTGT+TGG - chr5.2:57521306-57521325 None:intergenic 35.0%
ATGAGACAGAATTTGAGCAA+AGG - chr5.2:57520733-57520752 None:intergenic 35.0%
ATGGATGAGAATAGCATTTC+AGG - chr5.2:57520609-57520628 None:intergenic 35.0%
ATGTGTGTGTGATTGAATCT+AGG + chr5.2:57521743-57521762 MS.gene61935:intron 35.0%
CACCGGGTAATTTACATATT+TGG + chr5.2:57521307-57521326 MS.gene61935:intron 35.0%
CACCTTCAAGACCAAAAAAA+TGG + chr5.2:57521036-57521055 MS.gene61935:CDS 35.0%
CTAATGTTCACAAGTAGGTT+TGG - chr5.2:57523518-57523537 None:intergenic 35.0%
GAGAATAAGATGATAAGTGG+CGG + chr5.2:57520879-57520898 MS.gene61935:CDS 35.0%
GATAGATCAAAAGGGTTAGA+AGG + chr5.2:57520987-57521006 MS.gene61935:CDS 35.0%
GGCTTTACTTGGAGAAAATA+TGG + chr5.2:57522701-57522720 MS.gene61935:CDS 35.0%
GTGTCTAAGAACTGTGTATT+TGG + chr5.2:57522188-57522207 MS.gene61935:intron 35.0%
GTGTGAATGAGTCAATTCAT+AGG - chr5.2:57522945-57522964 None:intergenic 35.0%
TAGGATCCGTACGTTATTAT+TGG + chr5.2:57521926-57521945 MS.gene61935:intron 35.0%
TCACACACAAACACACATAT+AGG - chr5.2:57522558-57522577 None:intergenic 35.0%
TGCGTTAAGATGTGACATAT+GGG + chr5.2:57521384-57521403 MS.gene61935:intron 35.0%
TGGATGAGAATAGCATTTCA+GGG - chr5.2:57520608-57520627 None:intergenic 35.0%
TGGTACTAATGTTCACAAGT+AGG - chr5.2:57523523-57523542 None:intergenic 35.0%
TGGTGTGTTTGTAAACAGAA+AGG + chr5.2:57521946-57521965 MS.gene61935:intron 35.0%
TTATAGGTGCCTTGCTAATT+GGG + chr5.2:57521344-57521363 MS.gene61935:intron 35.0%
TTCAATGCATGCACATTCAA+TGG + chr5.2:57520809-57520828 MS.gene61935:CDS 35.0%
TTGCGTTAAGATGTGACATA+TGG + chr5.2:57521383-57521402 MS.gene61935:intron 35.0%
! AACTTTGAGGATTGGTGAAA+TGG + chr5.2:57520941-57520960 MS.gene61935:CDS 35.0%
! AAGGTATAAGGTTTTCTGGA+TGG - chr5.2:57522868-57522887 None:intergenic 35.0%
! ACTTTGAGGATTGGTGAAAT+GGG + chr5.2:57520942-57520961 MS.gene61935:CDS 35.0%
! ATGTGAAGGCACAACAAATT+AGG - chr5.2:57522589-57522608 None:intergenic 35.0%
! GGGTCACTAGTTTATGAAAA+TGG + chr5.2:57521779-57521798 MS.gene61935:intron 35.0%
! GGTATTGAATTTAGGTGTTG+AGG + chr5.2:57521249-57521268 MS.gene61935:intron 35.0%
! TTTCAGTGTTTTTCCAACAC+CGG + chr5.2:57521290-57521309 MS.gene61935:intron 35.0%
!! AAGATTCGGCATTGATTATC+CGG + chr5.2:57523631-57523650 MS.gene61935:CDS 35.0%
!! ATATGATGATGGTGCTGTTA+AGG - chr5.2:57523486-57523505 None:intergenic 35.0%
!! CTATAGCAAAGACCTTGTTT+TGG - chr5.2:57522088-57522107 None:intergenic 35.0%
!!! ATTTTTTTTTTGGTGGTGGC+CGG - chr5.2:57522420-57522439 None:intergenic 35.0%
!!! CATTTTTTTGGTCTTGAAGG+TGG - chr5.2:57521038-57521057 None:intergenic 35.0%
AACTAGTGACCCAATTAGCA+AGG - chr5.2:57521771-57521790 None:intergenic 40.0%
AAGTCTTTGCACTTGCTTCT+TGG - chr5.2:57523405-57523424 None:intergenic 40.0%
AATAAGATGATAAGTGGCGG+TGG + chr5.2:57520882-57520901 MS.gene61935:CDS 40.0%
AATCTAGGTGCCTTGCTAAT+TGG + chr5.2:57521758-57521777 MS.gene61935:intron 40.0%
AATGCCGAATCTTGAAGTAG+AGG - chr5.2:57523624-57523643 None:intergenic 40.0%
ACGTTCAGTTGTTAAGGTCT+AGG + chr5.2:57520916-57520935 MS.gene61935:CDS 40.0%
ACTCAACATGCTCAAATTGG+TGG + chr5.2:57520771-57520790 MS.gene61935:CDS 40.0%
AGATAAAGGTGAACCTGATG+AGG + chr5.2:57523733-57523752 MS.gene61935:CDS 40.0%
ATCTAGGTGCCTTGCTAATT+GGG + chr5.2:57521759-57521778 MS.gene61935:intron 40.0%
ATCTAGTTGCCCAATTAGCA+AGG - chr5.2:57521356-57521375 None:intergenic 40.0%
ATCTCAGTGTTTCCAATCTG+AGG - chr5.2:57522668-57522687 None:intergenic 40.0%
ATGAGAATAGCATTTCAGGG+TGG - chr5.2:57520605-57520624 None:intergenic 40.0%
ATGCCGAATCTTGAAGTAGA+GGG - chr5.2:57523623-57523642 None:intergenic 40.0%
ATGTTCACAAGTAGGTTTGG+TGG - chr5.2:57523515-57523534 None:intergenic 40.0%
CAAAGTTGAAAGTTAGGTCG+TGG - chr5.2:57521477-57521496 None:intergenic 40.0%
CGTTCAGTTGTTAAGGTCTA+GGG + chr5.2:57520917-57520936 MS.gene61935:CDS 40.0%
GAACATTACATCGGCCATAT+CGG - chr5.2:57523660-57523679 None:intergenic 40.0%
GGAAGAAATGGCAGTTTCAA+TGG - chr5.2:57523543-57523562 None:intergenic 40.0%
GTTATAGGTGCCTTGCTAAT+TGG + chr5.2:57521343-57521362 MS.gene61935:intron 40.0%
GTTCAGTTGTTAAGGTCTAG+GGG + chr5.2:57520918-57520937 MS.gene61935:CDS 40.0%
TAATTTACCTTGGGTGCTTG+CGG - chr5.2:57522745-57522764 None:intergenic 40.0%
TAGCAGCAGGAAGAATGATT+TGG + chr5.2:57522616-57522635 MS.gene61935:intron 40.0%
TAGTAGCAGTGGCAATAGTA+TGG + chr5.2:57523688-57523707 MS.gene61935:CDS 40.0%
TCAATCACACACACATTGTG+AGG - chr5.2:57521739-57521758 None:intergenic 40.0%
TGAACTAGAACTACCCAACA+TGG + chr5.2:57520575-57520594 MS.gene61935:CDS 40.0%
! AAACTGCCATTTCTTCCCAA+GGG + chr5.2:57523546-57523565 MS.gene61935:CDS 40.0%
! ACCCGAGTTGAACATTACAT+CGG - chr5.2:57523669-57523688 None:intergenic 40.0%
! TGCGGCCAAGTATTTCTTTT+TGG - chr5.2:57522727-57522746 None:intergenic 40.0%
! TTCAGTGTTTTTCCAACACC+GGG + chr5.2:57521291-57521310 MS.gene61935:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr5.2:57522419-57522438 None:intergenic 40.0%
CAAGTAAAGCCATCTTCTGG+TGG - chr5.2:57522692-57522711 None:intergenic 45.0%
CATGCTCAAATTGGTGGAAG+TGG + chr5.2:57520777-57520796 MS.gene61935:CDS 45.0%
CTCCAAGTAAAGCCATCTTC+TGG - chr5.2:57522695-57522714 None:intergenic 45.0%
GAATAGCATTTCAGGGTGGT+TGG - chr5.2:57520601-57520620 None:intergenic 45.0%
GCCGATGTAATGTTCAACTC+GGG + chr5.2:57523665-57523684 MS.gene61935:CDS 45.0%
GCTGTCTTGTGTGATTGATG+AGG - chr5.2:57522048-57522067 None:intergenic 45.0%
GGACCCTCTACTTCAAGATT+CGG + chr5.2:57523617-57523636 MS.gene61935:CDS 45.0%
GGCCGATGTAATGTTCAACT+CGG + chr5.2:57523664-57523683 MS.gene61935:CDS 45.0%
TAAGGTCTAGGGGAACTTTG+AGG + chr5.2:57520928-57520947 MS.gene61935:CDS 45.0%
TGTTGTGCCTTCACATGCAT+TGG + chr5.2:57522593-57522612 MS.gene61935:intron 45.0%
! CACCAGAAGATGGCTTTACT+TGG + chr5.2:57522690-57522709 MS.gene61935:CDS 45.0%
! GAAACTGCCATTTCTTCCCA+AGG + chr5.2:57523545-57523564 MS.gene61935:CDS 45.0%
! TCTAGGGGAACTTTGAGGAT+TGG + chr5.2:57520933-57520952 MS.gene61935:CDS 45.0%
! TGAGGATTGGTGAAATGGGT+GGG + chr5.2:57520946-57520965 MS.gene61935:CDS 45.0%
! TTGAGGATTGGTGAAATGGG+TGG + chr5.2:57520945-57520964 MS.gene61935:CDS 45.0%
!! ATTCGGCATTGATTATCCGG+TGG + chr5.2:57523634-57523653 MS.gene61935:CDS 45.0%
!! TTCACAAGTAGGTTTGGTGG+TGG - chr5.2:57523512-57523531 None:intergenic 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr5.2:57522418-57522437 None:intergenic 45.0%
ACTGAGATGCCACCAGAAGA+TGG + chr5.2:57522680-57522699 MS.gene61935:CDS 50.0%
ATGATAAGTGGCGGTGGTGA+TGG + chr5.2:57520888-57520907 MS.gene61935:CDS 50.0%
ATGCATCCAGCACCTCAGAT+TGG + chr5.2:57522653-57522672 MS.gene61935:CDS 50.0%
CTTTGCACTTGCTTCTTGGC+TGG - chr5.2:57523401-57523420 None:intergenic 50.0%
GATTGGTGAAATGGGTGGGA+GGG + chr5.2:57520950-57520969 MS.gene61935:CDS 50.0%
GCGGTGACGTTCAGTTGTTA+AGG + chr5.2:57520910-57520929 MS.gene61935:CDS 50.0%
GCTGCTACCAATGCATGTGA+AGG - chr5.2:57522603-57522622 None:intergenic 50.0%
TGAAATGGGTGGGAGGGATA+TGG + chr5.2:57520956-57520975 MS.gene61935:CDS 50.0%
TGATTATCCGGTGGCCGATA+TGG + chr5.2:57523643-57523662 MS.gene61935:CDS 50.0%
TTCAACTCGGGTAGTAGCAG+TGG + chr5.2:57523677-57523696 MS.gene61935:CDS 50.0%
! GTGTTTCCAATCTGAGGTGC+TGG - chr5.2:57522662-57522681 None:intergenic 50.0%
! TCACATGCATTGGTAGCAGC+AGG + chr5.2:57522603-57522622 MS.gene61935:intron 50.0%
!! ACAAGTAGGTTTGGTGGTGG+TGG - chr5.2:57523509-57523528 None:intergenic 50.0%
!! GGTGGTGGTGGATATGATGA+TGG - chr5.2:57523497-57523516 None:intergenic 50.0%
ATGGGTGGGAGGGATATGGA+AGG + chr5.2:57520960-57520979 MS.gene61935:CDS 55.0%
TGGCCACCCTTGGGAAGAAA+TGG - chr5.2:57523555-57523574 None:intergenic 55.0%
! CTGCCATTTCTTCCCAAGGG+TGG + chr5.2:57523549-57523568 MS.gene61935:CDS 55.0%
! GGATTGGTGAAATGGGTGGG+AGG + chr5.2:57520949-57520968 MS.gene61935:CDS 55.0%
! TCAGGGTGGTTGGCCATGTT+GGG - chr5.2:57520591-57520610 None:intergenic 55.0%
! TTCAGGGTGGTTGGCCATGT+TGG - chr5.2:57520592-57520611 None:intergenic 55.0%
!! ATAAGTGGCGGTGGTGATGG+CGG + chr5.2:57520891-57520910 MS.gene61935:CDS 55.0%
ACATCGGCCATATCGGCCAC+CGG - chr5.2:57523653-57523672 None:intergenic 60.0%
GGGGTTCAAACCTCGAACCC+CGG + chr5.2:57522398-57522417 MS.gene61935:intron 60.0%
GGGGTTCGAGGTTTGAACCC+CGG - chr5.2:57522399-57522418 None:intergenic 60.0%
TACTTGGCCGCAAGCACCCA+AGG + chr5.2:57522735-57522754 MS.gene61935:CDS 60.0%
TGCGGTGAACCACGACCTCA+GGG + chr5.2:57523577-57523596 MS.gene61935:CDS 60.0%
AGGTCGTGGTTCACCGCAGG+TGG - chr5.2:57523575-57523594 None:intergenic 65.0%
CTGAGGTCGTGGTTCACCGC+AGG - chr5.2:57523578-57523597 None:intergenic 65.0%
CTGCGGTGAACCACGACCTC+AGG + chr5.2:57523576-57523595 MS.gene61935:CDS 65.0%
GCGGTGAACCACGACCTCAG+GGG + chr5.2:57523578-57523597 MS.gene61935:CDS 65.0%
GTGAACCACGACCTCAGGGG+CGG + chr5.2:57523581-57523600 MS.gene61935:CDS 65.0%
TTCCCAAGGGTGGCCACCTG+CGG + chr5.2:57523559-57523578 MS.gene61935:CDS 65.0%
CACCGCAGGTGGCCACCCTT+GGG - chr5.2:57523564-57523583 None:intergenic 70.0%
CACGACCTCAGGGGCGGAGA+CGG + chr5.2:57523587-57523606 MS.gene61935:CDS 70.0%
CAGTACCGTCTCCGCCCCTG+AGG - chr5.2:57523595-57523614 None:intergenic 70.0%
CTCAGGGGCGGAGACGGTAC+TGG + chr5.2:57523593-57523612 MS.gene61935:CDS 70.0%
TCACCGCAGGTGGCCACCCT+TGG - chr5.2:57523565-57523584 None:intergenic 70.0%
! AGGGGCGGAGACGGTACTGG+TGG + chr5.2:57523596-57523615 MS.gene61935:CDS 70.0%
!! TTGGTGGTGGCCGGGGTTCG+AGG - chr5.2:57522411-57522430 None:intergenic 70.0%
CGTCTCCGCCCCTGAGGTCG+TGG - chr5.2:57523589-57523608 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 57520522 57523766 57520522 ID=MS.gene61935
chr5.2 mRNA 57520522 57523766 57520522 ID=MS.gene61935.t1;Parent=MS.gene61935
chr5.2 exon 57520522 57521057 57520522 ID=MS.gene61935.t1.exon1;Parent=MS.gene61935.t1
chr5.2 CDS 57520522 57521057 57520522 ID=cds.MS.gene61935.t1;Parent=MS.gene61935.t1
chr5.2 exon 57522619 57522756 57522619 ID=MS.gene61935.t1.exon2;Parent=MS.gene61935.t1
chr5.2 CDS 57522619 57522756 57522619 ID=cds.MS.gene61935.t1;Parent=MS.gene61935.t1
chr5.2 exon 57523358 57523766 57523358 ID=MS.gene61935.t1.exon3;Parent=MS.gene61935.t1
chr5.2 CDS 57523358 57523766 57523358 ID=cds.MS.gene61935.t1;Parent=MS.gene61935.t1
Gene Sequence

>MS.gene61935

ATGGAAGAAGTCATGAATTTCATCATGCGTGCTTTTGAATTAGCAAAAAATCTTGAACTAGAACTACCCAACATGGCCAACCACCCTGAAATGCTATTCTCATCCATTGATGATGTAGAAAAAGCATTTAATGCTGCCAAAGAAAGAGTAATGATGATGTTGTCATCACAACATGACACAACAACAACAACAACAAAACCTTCTAATTCCTTTGCTCAAATTCTGTCTCATGATGTTTTCATGCAAAAAACTCAACATGCTCAAATTGGTGGAAGTGGAAGTGCAATTTCAATGCATGCACATTCAATGGATCAATTGCTTCTAATGCAACACCCTTTTGATGTGAGTGTTCTAATTGAGAATAAGATGATAAGTGGCGGTGGTGATGGCGGTGACGTTCAGTTGTTAAGGTCTAGGGGAACTTTGAGGATTGGTGAAATGGGTGGGAGGGATATGGAAGGTTTAGATAGATCAAAAGGGTTAGAAGGAGATCAAATGCAAGCAATAGAAACACCACCTTCAAGACCAAAAAAATGGTATGTATATAATACATTTATGTTTATAAGTTCTTTATTATTAATTAGTTGATTAATTAAAGTGAATATGTATATCAAAGTTTCATATATTAAATGGAGCTTGACATAGCCTCACAATCTATGTTATTGAATCAAAGTCTTGGAATTGATTGAAATGAAACATCTTGAAACAACACAAAGATTATTTCTAAGGTATTGAATTTAGGTGTTGAGGTTGATTGAATTAATCTAGTTTCAGTGTTTTTCCAACACCGGGTAATTTACATATTTGGGTTTTAGTTTATGGTTATAGGTGCCTTGCTAATTGGGCAACTAGATTACAAAATTGCGTTAAGATGTGACATATGGGACCTTAATTTCAGTTGAATTGCAATCATAGATACATAAATAATCTTGATGTTGTGTCTATGTCGCAGCCACGACCTAACTTTCAACTTTGATGTATACATGTGATTGAAAGTACTAGCTAGCTTATGATGAGAACAAATCTTTTCTGTAAGATTTTCACTAGAGGGAGTCCATAATGAAAATTTTCACCCTACTTAGGATTTTCACATTATAAAACTTTTAATCAAATCATACCAATCATTTCCATAAGATTTTTACTAGAGGGAGTCGAAGTTCCTAGTACAAACATTGAGTAATCTAAAAGTAGAGATTGAAATGAGGTTAACTTGGCCTCACAATGTGTGTGTGATTGAATCTAGGTGCCTTGCTAATTGGGTCACTAGTTTATGAAAATGGTGAAGATAGAGCTTGTCCTGTTTTTGTCACAATTGTAGATTGCTTACACTTCAGCCGCCAACAACAATAATTGAAAGAAAGAAAACAAAAGTGAAATGCTTTTGAGGTATTGAAAGCTTTAGTTTAGGATCCGTACGTTATTATTGGTGTGTTTGTAAACAGAAAGGAAACTGACACAAAATGTAAGATAGAATTTTCCATGGTCTTTCTTAGTAATTAGGCAACAAGTCATCATGGATATTTCCTCATCAATCACACAAGACAGCTGTGTTAGTTTACATGACCAAAACAAGGTCTTTGCTATAGTATTTAGGCACAAATAGACATTTTCTCTAACCATAAAAAAAAATTGATTTGAATTTTTTTGGTGTTTGCTATTTTGGTGCGTGTCTAAGAACTGTGTATTTGGTCTTGTGATCATGTAAGACTAGCTTCACTTAAACATATTGAATTGAAAGTTCTTATAAATTATATCAAATTTATATACATTTCATGCACAAAAATAAACTTGTTGAAATTGTATCTCACTAGTTAATTATTTTAATGGATTATATGCTATTATATTATATATGCACAAATTTATATATGCAAGATCCGGGGTTCAAACCTCGAACCCCGGCCACCACCAAAAAAAAAATTCACTTTTCTACACAATAGTTTGACACAATTATTAGGAAGTTAATATGGTATAATTCAGTTGTTAGATTGGTCAATTTTTTACATAAAATTATAAGTAGGTTAATTGATCATTTTCCTATATGTGTGTTTGTGTGTGACACATTGACCTAATTTGTTGTGCCTTCACATGCATTGGTAGCAGCAGGAAGAATGATTTGGAGAAGAGAACAGAGATGCATCCAGCACCTCAGATTGGAAACACTGAGATGCCACCAGAAGATGGCTTTACTTGGAGAAAATATGGCCAAAAAGAAATACTTGGCCGCAAGCACCCAAGGTAAATTAACAATAATTACTTAGAATTGTACTTTATAATATAGGGTAATAATTTCCATAAAGAGTTTGAAAGTTTCAATTCTAAGACAAATTCGTCTTTCATTATGCACCATCCAGAAAACCTTATACCTTTCTTCTAAGAATATTTCTTGGTCATGTTGAAAATTCAGTAGAACAAGTGTGTGCCCTATGAATTGACTCATTCACACATCATAACAAGACAAGTTGACTATTTACATTCATGTATAAGAGACAACTAGTCGCTTTTTCATCACAACTACTCAACTAGTATTAAAAAAAGAAAATACTAAGATGAATAAATTCATCACGTTTATTTTGCCTTGATTACTTGTTAAATATTTCTTTTTCTTTTTTTTAATAATTGATTAGCATTAAAAAAAAAAAAATCTAAAACAGCAGTTTTGAATGAGAAATTGTCTTGAGTAGCTTATCTAAAAAAAATATTTTCAATAATTGATTTTCTTCAAAAAAAAAAATTGATTTCATTATAGTAAGCAACACTTAATTGTTTATTTTTTAAACATCTTGGTTTTTATTATATAATTTGTTGGCTAATTTGAAATATTTATTTCCTTTATCAGAAGTTACTATAGGTGCACACACCAAAAATTATATTTGTGTCCAGCCAAGAAGCAAGTGCAAAGACTTGATGAAAACCCTAACATAGTTGAAGTAACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACCACCAAACCTACTTGTGAACATTAGTACCATTGAAACTGCCATTTCTTCCCAAGGGTGGCCACCTGCGGTGAACCACGACCTCAGGGGCGGAGACGGTACTGGTGGACCCTCTACTTCAAGATTCGGCATTGATTATCCGGTGGCCGATATGGCCGATGTAATGTTCAACTCGGGTAGTAGCAGTGGCAATAGTATGGAATCACTCTTTTATCTAACTGAAGATAAAGGTGAACCTGATGAGGAGAAAAACTGA
Protein sequence

>MS.gene61935.t1

MEEVMNFIMRAFELAKNLELELPNMANHPEMLFSSIDDVEKAFNAAKERVMMMLSSQHDTTTTTTKPSNSFAQILSHDVFMQKTQHAQIGGSGSAISMHAHSMDQLLLMQHPFDVSVLIENKMISGGGDGGDVQLLRSRGTLRIGEMGGRDMEGLDRSKGLEGDQMQAIETPPSRPKKCSRKNDLEKRTEMHPAPQIGNTEMPPEDGFTWRKYGQKEILGRKHPRSYYRCTHQKLYLCPAKKQVQRLDENPNIVEVTYRGEHICHKSLTAPSSYPPPPNLLVNISTIETAISSQGWPPAVNHDLRGGDGTGGPSTSRFGIDYPVADMADVMFNSGSSSGNSMESLFYLTEDKGEPDEEKN