AlfalfaGEDB | MS.gene62070

M. sativa cultivar XinJiangDaYe / MS.gene62070

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62070.t1	RHN64951.1	93.4	151	10	0	1	151	266	416	4.30E-76	293.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62070.t1	Q0WRY5	69.3	150	46	0	1	150	216	365	6.9e-59	228.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62070.t1	G7JI20	93.4	151	10	0	1	151	244	394	3.1e-76	293.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62070.t1	MTR_4g131900	93.377	151	10	0	1	151	244	394	2.69e-103	301
MS.gene62070.t1	MTR_2g095880	81.081	148	28	0	1	148	234	381	1.48e-87	261
MS.gene62070.t1	MTR_2g095920	80.132	151	30	0	1	151	347	497	3.16e-84	255
MS.gene62070.t1	MTR_2g095950	76.351	148	35	0	1	148	202	349	2.36e-82	247
MS.gene62070.t1	MTR_1g067140	67.550	151	49	0	1	151	217	367	3.15e-75	229
MS.gene62070.t1	MTR_7g100500	67.550	151	47	1	1	151	216	364	1.25e-73	225
MS.gene62070.t1	MTR_2g019990	65.563	151	51	1	1	151	96	245	1.26e-67	209
MS.gene62070.t1	MTR_2g019990	65.563	151	51	1	1	151	232	381	3.78e-66	209
MS.gene62070.t1	MTR_1g117060	61.589	151	58	0	1	151	240	390	4.58e-65	206
MS.gene62070.t1	MTR_3g115500	60.274	146	57	1	1	145	96	241	1.81e-62	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62070.t1	AT5G02800	69.333	150	46	0	1	150	216	365	2.63e-76	232
MS.gene62070.t1	AT1G07870	73.333	150	39	1	1	150	246	394	8.78e-75	229
MS.gene62070.t1	AT2G28590	75.887	141	34	0	1	141	241	381	3.06e-74	228
MS.gene62070.t1	AT1G07870	74.825	143	36	0	1	143	246	388	7.55e-74	230
MS.gene62070.t1	AT5G18610	64.901	151	53	0	1	151	226	376	9.27e-67	211
MS.gene62070.t1	AT5G18610	64.901	151	53	0	1	151	226	376	9.27e-67	211
MS.gene62070.t1	AT5G18610	64.901	151	53	0	1	151	226	376	9.27e-67	211
MS.gene62070.t1	AT5G13160	64.085	142	51	0	1	142	229	370	2.21e-63	201
MS.gene62070.t1	AT3G20530	63.309	139	51	0	1	139	226	364	1.37e-62	197
MS.gene62070.t1	AT1G61860	62.222	135	51	0	1	135	228	362	2.48e-58	186

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Find 35 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGTCTTCTATGGTCAA+AGG	0.539436	8.2:+2980398	None:intergenic
AAGCAATGGATCCACCATCT+TGG	0.475395	8.2:+2980035	None:intergenic
AAGTCAGACATTTATAGCTT+TGG	0.369904	8.2:-2980456	MS.gene62070:CDS
AATTATCTCGAGCTTTGTAT+TGG	0.357711	8.2:+2979862	None:intergenic
ACAAGACCCACGTGTCAACA+AGG	0.591114	8.2:-2980539	MS.gene62070:CDS
ACAAGGGTAATGGGAACATT+TGG	0.327179	8.2:-2980522	MS.gene62070:CDS
ACGTGGGTCTTGTCACCAAT+TGG	0.449968	8.2:+2980549	None:intergenic
AGAGCAACCTAATATGCGGC+CGG	0.606698	8.2:-2979950	MS.gene62070:CDS
AGGCAACTCGGTCATTCAAA+AGG	0.524697	8.2:-2980071	MS.gene62070:CDS
ATGGTGGATCCATTGCTTGA+AGG	0.532682	8.2:-2980030	MS.gene62070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCGAATAAAGATGCATA+AGG	+	chr8.2:2980349-2980368	None:intergenic	30.0%
AACATTTGTTCAGTGCTAAA+AGG	+	chr8.2:2980231-2980250	None:intergenic	30.0%
AAGAACAAAAAGTAGTCGAA+TGG	-	chr8.2:2980069-2980088	MS.gene62070:CDS	30.0%
AAGTCAGACATTTATAGCTT+TGG	-	chr8.2:2979987-2980006	MS.gene62070:CDS	30.0%
AGAACAAAAAGTAGTCGAAT+GGG	-	chr8.2:2980070-2980089	MS.gene62070:CDS	30.0%
CAGTGCTAAAAGGAATATAT+AGG	+	chr8.2:2980221-2980240	None:intergenic	30.0%
GAATAAAGATGCATAAGGTA+AGG	+	chr8.2:2980344-2980363	None:intergenic	30.0%
GGAATATATAGGAAGCTTAA+TGG	+	chr8.2:2980210-2980229	None:intergenic	30.0%
TATGATTTCCAACAAGAGTT+AGG	+	chr8.2:2980114-2980133	None:intergenic	30.0%
TTGTTAAGCTAGAATGTAAG+TGG	-	chr8.2:2980180-2980199	MS.gene62070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	2979864	2980601	2979864	ID=MS.gene62070
chr8.2	mRNA	2979864	2980601	2979864	ID=MS.gene62070.t1;Parent=MS.gene62070
chr8.2	exon	2980374	2980601	2980374	ID=MS.gene62070.t1.exon1;Parent=MS.gene62070.t1
chr8.2	CDS	2980374	2980601	2980374	ID=cds.MS.gene62070.t1;Parent=MS.gene62070.t1
chr8.2	exon	2979864	2980091	2979864	ID=MS.gene62070.t1.exon2;Parent=MS.gene62070.t1
chr8.2	CDS	2979864	2980091	2979864	ID=cds.MS.gene62070.t1;Parent=MS.gene62070.t1

Gene Sequence

>MS.gene62070

TTATCTGATTTCGGCTTGGCAAAAGTAGGTCCAATTGGTGACAAGACCCACGTGTCAACAAGGGTAATGGGAACATTTGGGTACTGTGCTCCAGATTATGCAATGACAGGTCAATTGACATTCAAGTCAGACATTTATAGCTTTGGAGTCGCTCTTTTGGAACTCATCACAGGCAGAAAGGCCTTTGACCATAGAAGACCTGTTAAAGAACAAAAAGTAGTCGAATGGGTATGTCAATTATCTTTTACCTAACTCTTGTTGGAAATCATATATGCTGTTTATTACTAAGCCTTGCATGTTGTATAAAATATTGAAGTTGTTAAGCTAGAATGTAAGTGGTTATCCATTAAGCTTCCTATATATTCCTTTTAGCACTGAACAAATGTTTCATTGAATAGTTTGCTGATGATGAAGGTTGCTGATACATTGTCACATTGTTATGTGTTTGAGAAAGTTGTTTTCTTTTTATGGTAAAATCCTTACCTTATGCATCTTTATTCGCTTTTGCAGGCAACTCGGTCATTCAAAAGGCGAAAAAGTTTCTCCAAGATGGTGGATCCATTGCTTGAAGGTCAATATCCAGAAAAGGGTTTGTACCAAGCTTTTGACATTGCCGCTAGGTGTGTTCAAGAGCAACCTAATATGCGGCCGGTTATAGCAGATGTGGTCACAGCTCTAGATTTCATTGTTTCACAAAAATATGATCCACAAGTTCATCCAATACAAAGCTCGAGATAA

Protein sequence

>MS.gene62070.t1

LSDFGLAKVGPIGDKTHVSTRVMGTFGYCAPDYAMTGQLTFKSDIYSFGVALLELITGRKAFDHRRPVKEQKVVEWATRSFKRRKSFSKMVDPLLEGQYPEKGLYQAFDIAARCVQEQPNMRPVIADVVTALDFIVSQKYDPQVHPIQSSR