AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62088.t1 MTR_4g131160 99.206 126 1 0 1 126 109 234 7.14e-86 256
MS.gene62088.t1 MTR_4g131160 96.899 129 1 1 1 126 109 237 9.69e-84 250
MS.gene62088.t1 MTR_1g080890 75.000 56 12 1 73 126 176 231 5.16e-19 81.3
MS.gene62088.t1 MTR_8g012290 58.929 56 20 1 74 126 274 329 7.74e-15 69.7
MS.gene62088.t1 MTR_8g012290 58.929 56 20 1 74 126 274 329 7.97e-15 69.7
MS.gene62088.t1 MTR_7g053410 76.923 39 9 0 88 126 317 355 9.29e-15 69.7
MS.gene62088.t1 MTR_7g053410 76.923 39 9 0 88 126 317 355 9.34e-15 69.7
MS.gene62088.t1 MTR_3g116770 76.923 39 9 0 88 126 191 229 1.23e-14 69.3
MS.gene62088.t1 MTR_3g116770 76.923 39 9 0 88 126 191 229 1.28e-14 68.9
MS.gene62088.t1 MTR_1g017350 57.143 56 24 0 71 126 243 298 1.79e-14 68.6
MS.gene62088.t1 MTR_1g017350 57.143 56 24 0 71 126 243 298 1.80e-14 68.6
MS.gene62088.t1 MTR_1g017350 57.143 56 24 0 71 126 243 298 2.10e-14 68.6
MS.gene62088.t1 MTR_1g017350 57.143 56 24 0 71 126 243 298 2.13e-14 68.6
MS.gene62088.t1 MTR_4g070320 76.923 39 9 0 88 126 143 181 2.28e-14 68.2
MS.gene62088.t1 MTR_5g037250 67.391 46 15 0 81 126 105 150 4.13e-14 66.6
MS.gene62088.t1 MTR_8g065740 64.000 50 18 0 77 126 294 343 4.78e-14 67.4
MS.gene62088.t1 MTR_8g062240 76.923 39 9 0 88 126 151 189 5.28e-14 66.6
MS.gene62088.t1 MTR_3g498825 74.359 39 10 0 88 126 147 185 7.00e-14 66.6
MS.gene62088.t1 MTR_8g099880 71.795 39 11 0 88 126 145 183 1.78e-13 65.5
MS.gene62088.t1 MTR_5g048860 63.265 49 18 0 78 126 355 403 1.84e-13 65.9
MS.gene62088.t1 MTR_1g059270 69.767 43 13 0 84 126 156 198 4.45e-13 63.9
MS.gene62088.t1 MTR_1g052470 70.000 40 12 0 87 126 297 336 5.12e-13 64.7
MS.gene62088.t1 MTR_1g059270 69.767 43 13 0 84 126 156 198 6.12e-13 64.3
MS.gene62088.t1 MTR_4g033295 65.000 40 14 0 87 126 117 156 7.31e-12 59.7
MS.gene62088.t1 MTR_2g098310 65.000 40 14 0 87 126 331 370 8.37e-12 61.2
MS.gene62088.t1 MTR_2g098310 65.000 40 14 0 87 126 331 370 8.57e-12 61.2
MS.gene62088.t1 MTR_2g098310 65.000 40 14 0 87 126 331 370 8.81e-12 61.2
MS.gene62088.t1 MTR_7g092510 67.442 43 14 0 84 126 169 211 9.06e-12 60.8
MS.gene62088.t1 MTR_4g033295 65.000 40 14 0 87 126 117 156 9.07e-12 59.3
MS.gene62088.t1 MTR_2g098310 65.000 40 14 0 87 126 331 370 9.35e-12 60.8
MS.gene62088.t1 MTR_4g065870 65.000 40 14 0 87 126 354 393 1.17e-11 60.8
MS.gene62088.t1 MTR_4g065870 65.000 40 14 0 87 126 354 393 1.19e-11 60.8
MS.gene62088.t1 MTR_4g065870 65.000 40 14 0 87 126 354 393 1.24e-11 60.5
MS.gene62088.t1 MTR_4g033295 65.000 40 14 0 87 126 117 156 1.64e-11 58.9
MS.gene62088.t1 MTR_1g070870 75.000 52 13 0 75 126 110 161 8.87e-11 57.8
MS.gene62088.t1 MTR_1g070870 75.000 52 13 0 75 126 107 158 8.92e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62088.t1 AT2G24260 55.556 108 27 3 34 126 75 176 5.55e-26 100
MS.gene62088.t1 AT4G30980 66.667 93 20 5 38 126 83 168 7.91e-26 99.0
MS.gene62088.t1 AT4G30980 66.667 93 20 5 38 126 131 216 2.48e-25 98.2
MS.gene62088.t1 AT2G24260 89.362 47 5 0 80 126 27 73 1.38e-23 91.7
MS.gene62088.t1 AT5G58010 54.639 97 32 3 37 126 46 137 3.92e-21 86.3
MS.gene62088.t1 AT1G59640 57.895 57 24 0 70 126 118 174 6.59e-15 69.7
MS.gene62088.t1 AT3G07340 67.391 46 15 0 81 126 251 296 1.44e-14 68.9
MS.gene62088.t1 AT1G59640 57.895 57 24 0 70 126 118 174 1.59e-14 68.2
MS.gene62088.t1 AT3G07340 67.391 46 15 0 81 126 251 296 1.74e-14 68.9
MS.gene62088.t1 AT4G34530 76.923 39 9 0 88 126 172 210 2.75e-14 68.2
MS.gene62088.t1 AT5G48560 76.923 39 9 0 88 126 301 339 3.74e-14 67.8
MS.gene62088.t1 AT5G48560 76.923 39 9 0 88 126 301 339 3.83e-14 67.8
MS.gene62088.t1 AT1G10120 63.830 47 17 0 80 126 198 244 1.04e-13 66.6
MS.gene62088.t1 AT1G10120 63.830 47 17 0 80 126 198 244 1.04e-13 66.6
MS.gene62088.t1 AT1G68920 74.359 39 10 0 88 126 302 340 1.60e-13 66.2
MS.gene62088.t1 AT1G68920 74.359 39 10 0 88 126 303 341 1.65e-13 66.2
MS.gene62088.t1 AT1G68920 74.359 39 10 0 88 126 303 341 1.65e-13 66.2
MS.gene62088.t1 AT1G68920 74.359 39 10 0 88 126 303 341 1.65e-13 66.2
MS.gene62088.t1 AT5G50915 71.795 39 11 0 88 126 136 174 1.76e-13 65.1
MS.gene62088.t1 AT5G50915 71.795 39 11 0 88 126 136 174 1.76e-13 65.1
MS.gene62088.t1 AT5G50915 71.795 39 11 0 88 126 136 174 2.30e-13 65.1
MS.gene62088.t1 AT5G50915 71.795 39 11 0 88 126 136 174 2.30e-13 65.1
MS.gene62088.t1 AT2G42280 48.649 74 33 2 54 126 248 317 2.36e-13 65.5
MS.gene62088.t1 AT2G42280 48.649 74 33 2 54 126 248 317 2.46e-13 65.5
MS.gene62088.t1 AT2G42300 69.767 43 13 0 84 126 181 223 5.53e-13 63.5
MS.gene62088.t1 AT2G42300 69.767 43 13 0 84 126 181 223 7.02e-13 63.2
MS.gene62088.t1 AT2G42300 69.767 43 13 0 84 126 181 223 7.02e-13 63.2
MS.gene62088.t1 AT5G62610 47.059 68 36 0 59 126 124 191 8.76e-13 63.5
MS.gene62088.t1 AT5G62610 47.059 68 36 0 59 126 124 191 8.76e-13 63.5
MS.gene62088.t1 AT3G23690 71.795 39 11 0 88 126 191 229 1.04e-12 63.5
MS.gene62088.t1 AT2G42300 69.767 43 13 0 84 126 181 223 1.09e-12 63.2
MS.gene62088.t1 AT2G42300 69.767 43 13 0 84 126 181 223 1.30e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 201 239 1.43e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 172 210 1.48e-12 63.2
MS.gene62088.t1 AT2G18300 69.231 39 12 0 88 126 185 223 1.49e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 223 261 1.53e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 223 261 1.53e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 223 261 1.53e-12 63.2
MS.gene62088.t1 AT1G26260 69.231 39 12 0 88 126 223 261 1.53e-12 63.2
MS.gene62088.t1 AT2G18300 69.231 39 12 0 88 126 185 223 1.54e-12 63.2
MS.gene62088.t1 AT1G25330 69.231 39 12 0 88 126 104 142 1.60e-12 62.0
MS.gene62088.t1 AT2G18300 69.231 39 12 0 88 126 185 223 1.62e-12 63.2
MS.gene62088.t1 AT3G57800 69.767 43 13 0 84 126 200 242 1.93e-12 63.2
MS.gene62088.t1 AT3G57800 69.767 43 13 0 84 126 200 242 2.47e-12 62.8
MS.gene62088.t1 AT4G36540 66.667 39 13 0 88 126 141 179 2.77e-12 62.4
MS.gene62088.t1 AT4G36540 66.667 39 13 0 88 126 141 179 2.80e-12 62.4
MS.gene62088.t1 AT1G73830 69.231 39 12 0 88 126 147 185 2.87e-12 62.0
MS.gene62088.t1 AT1G73830 69.231 39 12 0 88 126 147 185 2.96e-12 62.0
MS.gene62088.t1 AT1G51140 44.000 75 31 2 51 125 278 341 2.11e-11 60.1
MS.gene62088.t1 AT4G02590 75.000 56 11 1 74 126 66 121 2.31e-11 59.3
MS.gene62088.t1 AT4G02590 75.000 56 11 1 74 126 129 184 2.57e-11 59.7
MS.gene62088.t1 AT4G02590 75.000 56 11 1 74 126 129 184 2.57e-11 59.7

Find 50 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTGTTAACGACGTCGTTC+TGG 0.234818 8.2:-4026649 None:intergenic
TGAGAGGATGAAAGCTTTGC+AGG 0.309874 8.2:+4027651 MS.gene62088:CDS
ATGCTTCTCACCGCCGATTC+CGG 0.331027 8.2:+4026590 MS.gene62088:CDS
GAACGATAGGGGCAGAGTTT+TGG 0.337044 8.2:+4026956 MS.gene62088:intron
CTCAGCCAAGGCAGAAGGTT+AGG 0.345610 8.2:+4027029 MS.gene62088:CDS
AGTGTTACCTTGTTTGCATT+AGG 0.372475 8.2:-4027682 None:intergenic
GAGCTCCACTCGCCGGAGCT+TGG 0.406538 8.2:-4027003 None:intergenic
ACCTTCTGCCTTGGCTGAGC+CGG 0.408333 8.2:-4027025 None:intergenic
CCCTTTCGGCGATGCTGTGT+GGG 0.435060 8.2:-4027075 None:intergenic
GCTCTCTTCAACGGTTTCTC+CGG 0.441559 8.2:+4026795 MS.gene62088:CDS
TAGTGAGATACATACCCTTT+CGG 0.447375 8.2:-4027089 None:intergenic
GTGGAGGAGACCTCCGGAAT+CGG 0.449433 8.2:-4026603 None:intergenic
CTTGCCCTAACCTTCTGCCT+TGG 0.449584 8.2:-4027034 None:intergenic
TCAGCCAAGGCAGAAGGTTA+GGG 0.474534 8.2:+4027030 MS.gene62088:CDS
GGTTGAAAATGATGAGGTTG+AGG 0.476792 8.2:-4026834 None:intergenic
GGTGTTAACGACGTCGTTCT+GGG 0.478074 8.2:-4026648 None:intergenic
AGGCATGTGGAGGAGACCTC+CGG 0.490529 8.2:-4026609 None:intergenic
TCCGTTCAAGCTCTCTTCAA+CGG 0.500853 8.2:+4026786 MS.gene62088:CDS
CCCACACAGCATCGCCGAAA+GGG 0.501568 8.2:+4027075 MS.gene62088:CDS
ACCCTTTCGGCGATGCTGTG+TGG 0.505234 8.2:-4027076 None:intergenic
AGCTTGGTTCGTTGCACTCA+CGG 0.516430 8.2:-4026987 None:intergenic
AGCTCCGGCGAGTGGAGCTC+CGG 0.517913 8.2:+4027006 MS.gene62088:CDS
AGGGACACCATGGAGAGATC+CGG 0.526947 8.2:-4026814 None:intergenic
GAGTGCAACGAACCAAGCTC+CGG 0.538396 8.2:+4026991 MS.gene62088:CDS
ACCGTTGAAGAGAGCTTGAA+CGG 0.539080 8.2:-4026787 None:intergenic
GTGGAGCTCCGGCTCAGCCA+AGG 0.540877 8.2:+4027017 MS.gene62088:CDS
TGAGCCGGAGCTCCACTCGC+CGG 0.543105 8.2:-4027010 None:intergenic
ACGAACCAAGCTCCGGCGAG+TGG 0.549919 8.2:+4026998 MS.gene62088:CDS
TGGGAGGAGTCAAAGTCAGC+AGG 0.551562 8.2:-4026629 None:intergenic
GTTGAAAATGATGAGGTTGA+GGG 0.552496 8.2:-4026833 None:intergenic
GGTTTCTCCGGATCTCTCCA+TGG 0.559827 8.2:+4026807 MS.gene62088:CDS
ACCCACACAGCATCGCCGAA+AGG 0.569008 8.2:+4027074 MS.gene62088:CDS
TATGAATATACTCACGGAGG+AGG 0.570799 8.2:-4026669 None:intergenic
GGCGATGCTGTGTGGGTCGG+TGG 0.575489 8.2:-4027068 None:intergenic
CAAGGCAGAAGGTTAGGGCA+AGG 0.577404 8.2:+4027035 MS.gene62088:CDS
CAAAGTCAGCAGGCATGTGG+AGG 0.582463 8.2:-4026619 None:intergenic
TCCGGCTCAGCCAAGGCAGA+AGG 0.583403 8.2:+4027024 MS.gene62088:CDS
AGTCAAAGTCAGCAGGCATG+TGG 0.593631 8.2:-4026622 None:intergenic
TTCGGCGATGCTGTGTGGGT+CGG 0.599244 8.2:-4027071 None:intergenic
TTATGTATGGCAGTTACGGA+GGG 0.606270 8.2:+4027618 MS.gene62088:intron
TTTATGTATGGCAGTTACGG+AGG 0.609201 8.2:+4027617 MS.gene62088:intron
GATGAGGTTGAGGGACACCA+TGG 0.619769 8.2:-4026824 None:intergenic
ACTTGTTCCTAATGCAAACA+AGG 0.620351 8.2:+4027675 MS.gene62088:CDS
GAGGAGACCTCCGGAATCGG+CGG 0.620378 8.2:-4026600 None:intergenic
CTTCTCACCGCCGATTCCGG+AGG 0.626580 8.2:+4026593 MS.gene62088:CDS
AGAAAGAATAGAACCTGAGG+AGG 0.639672 8.2:-4026855 None:intergenic
CAGAAGGTTAGGGCAAGGAG+AGG 0.644091 8.2:+4027040 MS.gene62088:CDS
GTTAACGACGTCGTTCTGGG+AGG 0.675970 8.2:-4026645 None:intergenic
TGAGGAGGTTGAAAATGATG+AGG 0.716913 8.2:-4026840 None:intergenic
GGAGGGAAAGAATTGCTGAG+AGG 0.735960 8.2:+4027635 MS.gene62088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTTATTTCTTTTTT+GGG + chr8.2:4026928-4026947 MS.gene62088:intron 10.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr8.2:4027297-4027316 MS.gene62088:intron 15.0%
!! TAACGTTGTTAATTAATTAA+CGG - chr8.2:4026705-4026724 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr8.2:4027296-4027315 MS.gene62088:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr8.2:4027232-4027251 MS.gene62088:intron 15.0%
!!! GATTTGATTTATTTCTTTTT+TGG + chr8.2:4026927-4026946 MS.gene62088:intron 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr8.2:4027231-4027250 MS.gene62088:intron 15.0%
!! AAAGTGGAATATATTGTATT+GGG + chr8.2:4027256-4027275 MS.gene62088:intron 20.0%
!! AGAAAATATGAATATACTCA+CGG - chr8.2:4026678-4026697 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr8.2:4027233-4027252 MS.gene62088:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr8.2:4027366-4027385 MS.gene62088:intron 20.0%
!!! GGTAATTTTGTTTTTATGTA+TGG + chr8.2:4027605-4027624 MS.gene62088:intron 20.0%
!!! TTAATATTGTTAGCTTTTAC+AGG + chr8.2:4026749-4026768 MS.gene62088:intron 20.0%
! ACAGAATATAAACCCTTATT+TGG + chr8.2:4027482-4027501 MS.gene62088:intron 25.0%
! CAAAGTAGGTCAATTAAATT+GGG - chr8.2:4027196-4027215 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr8.2:4027255-4027274 MS.gene62088:intron 25.0%
! GTAATAGTACAATGGTAATT+TGG + chr8.2:4027584-4027603 MS.gene62088:intron 25.0%
!! CAGAATATAAACCCTTATTT+GGG + chr8.2:4027483-4027502 MS.gene62088:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr8.2:4027343-4027362 MS.gene62088:intron 25.0%
!!! CAATTTTTTCAGAGAAAATG+CGG + chr8.2:4027442-4027461 MS.gene62088:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr8.2:4027365-4027384 MS.gene62088:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr8.2:4027344-4027363 MS.gene62088:intron 25.0%
AAATATGAATATACTCACGG+AGG - chr8.2:4026675-4026694 None:intergenic 30.0%
AACAGAAACAGAATGATAGT+AGG - chr8.2:4027519-4027538 None:intergenic 30.0%
CCAAAGTAGGTCAATTAAAT+TGG - chr8.2:4027197-4027216 None:intergenic 30.0%
CCAATTTAATTGACCTACTT+TGG + chr8.2:4027194-4027213 MS.gene62088:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr8.2:4027240-4027259 MS.gene62088:intron 30.0%
! AATATAAACCCTTATTTGGG+AGG + chr8.2:4027486-4027505 MS.gene62088:intron 30.0%
! ATATAAACCCTTATTTGGGA+GGG + chr8.2:4027487-4027506 MS.gene62088:intron 30.0%
! GTTTTTATGTATGGCAGTTA+CGG + chr8.2:4027614-4027633 MS.gene62088:intron 30.0%
! TCTGAAAAAATTGCACGTTT+TGG - chr8.2:4027435-4027454 None:intergenic 30.0%
!! CTCTTTCTTTTGTTTCCTTT+CGG + chr8.2:4027547-4027566 MS.gene62088:intron 30.0%
!! TTTTGGGAATTTGAACGATA+GGG + chr8.2:4026944-4026963 MS.gene62088:intron 30.0%
!! TTTTTGGGAATTTGAACGAT+AGG + chr8.2:4026943-4026962 MS.gene62088:intron 30.0%
AGAAAATGGGTCAGTTATTC+CGG + chr8.2:4027379-4027398 MS.gene62088:intron 35.0%
CTAAGAAAGAATAGAACCTG+AGG - chr8.2:4026861-4026880 None:intergenic 35.0%
GTAGGTCAATTAAATTGGGA+CGG - chr8.2:4027192-4027211 None:intergenic 35.0%
GTATCTCACTATAACGTGTT+TGG + chr8.2:4027101-4027120 MS.gene62088:intron 35.0%
GTTGAAAATGATGAGGTTGA+GGG - chr8.2:4026836-4026855 None:intergenic 35.0%
GTTTGGTTGTGCAGAAAATT+GGG + chr8.2:4027118-4027137 MS.gene62088:intron 35.0%
TAGTGAGATACATACCCTTT+CGG - chr8.2:4027092-4027111 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr8.2:4027210-4027229 None:intergenic 35.0%
TGTTTGGTTGTGCAGAAAAT+TGG + chr8.2:4027117-4027136 MS.gene62088:intron 35.0%
TTTGGGAATTTGAACGATAG+GGG + chr8.2:4026945-4026964 MS.gene62088:intron 35.0%
AAAATGCGGTTGTTTGTCAG+TGG + chr8.2:4027456-4027475 MS.gene62088:intron 40.0%
AACAGAATGATAGTAGGCGT+AGG - chr8.2:4027513-4027532 None:intergenic 40.0%
AGAAAGAATAGAACCTGAGG+AGG - chr8.2:4026858-4026877 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr8.2:4027380-4027399 MS.gene62088:intron 40.0%
GGTTGAAAATGATGAGGTTG+AGG - chr8.2:4026837-4026856 None:intergenic 40.0%
GTGGAAGGGTAATAGTACAA+TGG + chr8.2:4027576-4027595 MS.gene62088:intron 40.0%
TATGAATATACTCACGGAGG+AGG - chr8.2:4026672-4026691 None:intergenic 40.0%
TGAGGAGGTTGAAAATGATG+AGG - chr8.2:4026843-4026862 None:intergenic 40.0%
TGTTTCCTTTCGGATCAATG+TGG + chr8.2:4027557-4027576 MS.gene62088:intron 40.0%
TTATGTATGGCAGTTACGGA+GGG + chr8.2:4027618-4027637 MS.gene62088:intron 40.0%
TTTATGTATGGCAGTTACGG+AGG + chr8.2:4027617-4027636 MS.gene62088:intron 40.0%
! TCATCATTTTCAACCTCCTC+AGG + chr8.2:4026842-4026861 MS.gene62088:CDS 40.0%
ACCGTTGAAGAGAGCTTGAA+CGG - chr8.2:4026790-4026809 None:intergenic 45.0%
CCTTTCGGATCAATGTGGAA+GGG + chr8.2:4027562-4027581 MS.gene62088:intron 45.0%
GGTCAATTAAATTGGGACGG+AGG - chr8.2:4027189-4027208 None:intergenic 45.0%
GTATATTACTCCCTCTGTCC+CGG - chr8.2:4027401-4027420 None:intergenic 45.0%
TCCGTTCAAGCTCTCTTCAA+CGG + chr8.2:4026786-4026805 MS.gene62088:CDS 45.0%
TCCTTTCGGATCAATGTGGA+AGG + chr8.2:4027561-4027580 MS.gene62088:intron 45.0%
TGAGAGGATGAAAGCTTTGC+AGG + chr8.2:4027651-4027670 MS.gene62088:CDS 45.0%
!!! TGTTAGCTTTTACAGGCTGC+TGG + chr8.2:4026756-4026775 MS.gene62088:intron 45.0%
AGGTGTTAACGACGTCGTTC+TGG - chr8.2:4026652-4026671 None:intergenic 50.0%
AGTCAAAGTCAGCAGGCATG+TGG - chr8.2:4026625-4026644 None:intergenic 50.0%
CCCTTCCACATTGATCCGAA+AGG - chr8.2:4027565-4027584 None:intergenic 50.0%
GCTCTCTTCAACGGTTTCTC+CGG + chr8.2:4026795-4026814 MS.gene62088:CDS 50.0%
GGAGGGAAAGAATTGCTGAG+AGG + chr8.2:4027635-4027654 MS.gene62088:CDS 50.0%
GGTGTTAACGACGTCGTTCT+GGG - chr8.2:4026651-4026670 None:intergenic 50.0%
GTCAGTTATTCCGGGACAGA+GGG + chr8.2:4027388-4027407 MS.gene62088:intron 50.0%
TCAGCCAAGGCAGAAGGTTA+GGG + chr8.2:4027030-4027049 MS.gene62088:CDS 50.0%
! AGCTTGGTTCGTTGCACTCA+CGG - chr8.2:4026990-4027009 None:intergenic 50.0%
! GAACGATAGGGGCAGAGTTT+TGG + chr8.2:4026956-4026975 MS.gene62088:intron 50.0%
!!! TAGGGGCAGAGTTTTGGAAG+TGG + chr8.2:4026962-4026981 MS.gene62088:intron 50.0%
AGGGACACCATGGAGAGATC+CGG - chr8.2:4026817-4026836 None:intergenic 55.0%
CAAAGTCAGCAGGCATGTGG+AGG - chr8.2:4026622-4026641 None:intergenic 55.0%
CAAGGCAGAAGGTTAGGGCA+AGG + chr8.2:4027035-4027054 MS.gene62088:CDS 55.0%
CAGAAGGTTAGGGCAAGGAG+AGG + chr8.2:4027040-4027059 MS.gene62088:CDS 55.0%
CTCAGCCAAGGCAGAAGGTT+AGG + chr8.2:4027029-4027048 MS.gene62088:CDS 55.0%
CTTGCCCTAACCTTCTGCCT+TGG - chr8.2:4027037-4027056 None:intergenic 55.0%
GAGTGCAACGAACCAAGCTC+CGG + chr8.2:4026991-4027010 MS.gene62088:CDS 55.0%
GATGAGGTTGAGGGACACCA+TGG - chr8.2:4026827-4026846 None:intergenic 55.0%
GCGTAGGCCCTCCCAAATAA+GGG - chr8.2:4027497-4027516 None:intergenic 55.0%
GGTCAGTTATTCCGGGACAG+AGG + chr8.2:4027387-4027406 MS.gene62088:intron 55.0%
GGTTTCTCCGGATCTCTCCA+TGG + chr8.2:4026807-4026826 MS.gene62088:CDS 55.0%
TGGGAGGAGTCAAAGTCAGC+AGG - chr8.2:4026632-4026651 None:intergenic 55.0%
! GTTAACGACGTCGTTCTGGG+AGG - chr8.2:4026648-4026667 None:intergenic 55.0%
!! ATGCTTCTCACCGCCGATTC+CGG + chr8.2:4026590-4026609 MS.gene62088:CDS 55.0%
ACCCACACAGCATCGCCGAA+AGG + chr8.2:4027074-4027093 MS.gene62088:CDS 60.0%
ACCCTTTCGGCGATGCTGTG+TGG - chr8.2:4027079-4027098 None:intergenic 60.0%
ACCTTCTGCCTTGGCTGAGC+CGG - chr8.2:4027028-4027047 None:intergenic 60.0%
AGGCATGTGGAGGAGACCTC+CGG - chr8.2:4026612-4026631 None:intergenic 60.0%
CCCACACAGCATCGCCGAAA+GGG + chr8.2:4027075-4027094 MS.gene62088:CDS 60.0%
CCCTTTCGGCGATGCTGTGT+GGG - chr8.2:4027078-4027097 None:intergenic 60.0%
GGCGTAGGCCCTCCCAAATA+AGG - chr8.2:4027498-4027517 None:intergenic 60.0%
GTGGAGGAGACCTCCGGAAT+CGG - chr8.2:4026606-4026625 None:intergenic 60.0%
TTCGGCGATGCTGTGTGGGT+CGG - chr8.2:4027074-4027093 None:intergenic 60.0%
ACGAACCAAGCTCCGGCGAG+TGG + chr8.2:4026998-4027017 MS.gene62088:CDS 65.0%
GAGGAGACCTCCGGAATCGG+CGG - chr8.2:4026603-4026622 None:intergenic 65.0%
TCCGGCTCAGCCAAGGCAGA+AGG + chr8.2:4027024-4027043 MS.gene62088:CDS 65.0%
!! CTTCTCACCGCCGATTCCGG+AGG + chr8.2:4026593-4026612 MS.gene62088:CDS 65.0%
AGCTCCGGCGAGTGGAGCTC+CGG + chr8.2:4027006-4027025 MS.gene62088:CDS 70.0%
GAGCTCCACTCGCCGGAGCT+TGG - chr8.2:4027006-4027025 None:intergenic 70.0%
GGCGATGCTGTGTGGGTCGG+TGG - chr8.2:4027071-4027090 None:intergenic 70.0%
GTGGAGCTCCGGCTCAGCCA+AGG + chr8.2:4027017-4027036 MS.gene62088:CDS 70.0%
TGAGCCGGAGCTCCACTCGC+CGG - chr8.2:4027013-4027032 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 4026590 4027696 4026590 ID=MS.gene62088
chr8.2 mRNA 4026590 4027696 4026590 ID=MS.gene62088.t1;Parent=MS.gene62088
chr8.2 exon 4026590 4026676 4026590 ID=MS.gene62088.t1.exon1;Parent=MS.gene62088.t1
chr8.2 CDS 4026590 4026676 4026590 ID=cds.MS.gene62088.t1;Parent=MS.gene62088.t1
chr8.2 exon 4026771 4026863 4026771 ID=MS.gene62088.t1.exon2;Parent=MS.gene62088.t1
chr8.2 CDS 4026771 4026863 4026771 ID=cds.MS.gene62088.t1;Parent=MS.gene62088.t1
chr8.2 exon 4026965 4027096 4026965 ID=MS.gene62088.t1.exon3;Parent=MS.gene62088.t1
chr8.2 CDS 4026965 4027096 4026965 ID=cds.MS.gene62088.t1;Parent=MS.gene62088.t1
chr8.2 exon 4027631 4027696 4027631 ID=MS.gene62088.t1.exon4;Parent=MS.gene62088.t1
chr8.2 CDS 4027631 4027696 4027631 ID=cds.MS.gene62088.t1;Parent=MS.gene62088.t1
Gene Sequence

>MS.gene62088

ATGCTTCTCACCGCCGATTCCGGAGGTCTCCTCCACATGCCTGCTGACTTTGACTCCTCCCAGAACGACGTCGTTAACACCTCCTCCGTGAGTATATTCATATTTTCTCACTCCGTTAATTAATTAACAACGTTATCGTTTTTATTACTACTGAATATTTTAATATTGTTAGCTTTTACAGGCTGCTGGTGACGCTTCCGTTCAAGCTCTCTTCAACGGTTTCTCCGGATCTCTCCATGGTGTCCCTCAACCTCATCATTTTCAACCTCCTCAGGTTCTATTCTTTCTTAGTTTTTCAAACAAAATCATTGAAATATTTTTCATGTGCATGTAAATTGATTTGATTTATTTCTTTTTTGGGAATTTGAACGATAGGGGCAGAGTTTTGGAAGTGGTTCCGTGAGTGCAACGAACCAAGCTCCGGCGAGTGGAGCTCCGGCTCAGCCAAGGCAGAAGGTTAGGGCAAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCCGAAAGGGTATGTATCTCACTATAACGTGTTTGGTTGTGCAGAAAATTGGGTACAATAAATAACTTAAGTTGTCATTTTCAGTGTAGCAATTACTACCTCCGTCCCAATTTAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGACTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACAGAGGGAGTAATATACTTATGAGAACGCCAAAACGTGCAATTTTTTCAGAGAAAATGCGGTTGTTTGTCAGTGGCTAACAGAATATAAACCCTTATTTGGGAGGGCCTACGCCTACTATCATTCTGTTTCTGTTTTTAAAATCTCTTTCTTTTGTTTCCTTTCGGATCAATGTGGAAGGGTAATAGTACAATGGTAATTTGGTAATTTTGTTTTTATGTATGGCAGTTACGGAGGGAAAGAATTGCTGAGAGGATGAAAGCTTTGCAGGAACTTGTTCCTAATGCAAACAAG
Protein sequence

>MS.gene62088.t1

MLLTADSGGLLHMPADFDSSQNDVVNTSSAAGDASVQALFNGFSGSLHGVPQPHHFQPPQGQSFGSGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANK