Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62104.t1 | RHN80703.1 | 78.9 | 593 | 88 | 4 | 1 | 560 | 87 | 675 | 4.80E-258 | 900.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62104.t1 | F4K493 | 30.9 | 751 | 308 | 17 | 4 | 559 | 98 | 832 | 7.2e-77 | 289.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62104.t1 | A0A072VN36 | 78.9 | 593 | 88 | 4 | 1 | 560 | 100 | 688 | 3.5e-258 | 900.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62104.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62104.t1 | MTR_1g081750 | 78.921 | 593 | 88 | 4 | 1 | 560 | 100 | 688 | 0.0 | 936 |
| MS.gene62104.t1 | MTR_7g026650 | 51.788 | 643 | 216 | 17 | 2 | 557 | 87 | 722 | 0.0 | 568 |
| MS.gene62104.t1 | MTR_3g071860 | 50.830 | 482 | 174 | 11 | 142 | 560 | 356 | 837 | 7.74e-136 | 426 |
| MS.gene62104.t1 | MTR_3g071860 | 66.667 | 150 | 47 | 2 | 1 | 147 | 102 | 251 | 1.07e-55 | 203 |
| MS.gene62104.t1 | MTR_5g083300 | 47.246 | 345 | 144 | 5 | 251 | 557 | 526 | 870 | 9.86e-87 | 293 |
| MS.gene62104.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 104 | 257 | 6.29e-25 | 110 |
| MS.gene62104.t1 | MTR_5g083300 | 47.246 | 345 | 144 | 5 | 251 | 557 | 563 | 907 | 1.10e-86 | 293 |
| MS.gene62104.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 141 | 294 | 5.19e-25 | 110 |
| MS.gene62104.t1 | MTR_7g026620 | 42.752 | 407 | 139 | 14 | 140 | 532 | 11 | 337 | 1.02e-78 | 260 |
| MS.gene62104.t1 | MTR_7g450860 | 39.899 | 198 | 108 | 3 | 303 | 494 | 596 | 788 | 5.45e-42 | 162 |
| MS.gene62104.t1 | MTR_7g029525 | 41.989 | 181 | 103 | 2 | 318 | 497 | 662 | 841 | 2.52e-41 | 160 |
| MS.gene62104.t1 | MTR_7g450780 | 42.553 | 188 | 94 | 5 | 318 | 497 | 667 | 848 | 1.40e-40 | 158 |
| MS.gene62104.t1 | MTR_7g450820 | 41.622 | 185 | 98 | 3 | 318 | 497 | 567 | 746 | 3.09e-40 | 157 |
| MS.gene62104.t1 | MTR_7g050445 | 41.711 | 187 | 97 | 5 | 318 | 497 | 630 | 811 | 7.88e-40 | 155 |
| MS.gene62104.t1 | MTR_4g088650 | 40.761 | 184 | 101 | 3 | 318 | 497 | 578 | 757 | 2.07e-39 | 154 |
| MS.gene62104.t1 | MTR_7g450790 | 40.437 | 183 | 101 | 3 | 319 | 497 | 778 | 956 | 3.47e-38 | 151 |
| MS.gene62104.t1 | MTR_2g437480 | 33.649 | 211 | 109 | 7 | 305 | 508 | 416 | 602 | 2.87e-25 | 111 |
| MS.gene62104.t1 | MTR_8g037345 | 32.990 | 194 | 104 | 6 | 318 | 508 | 282 | 452 | 1.18e-24 | 109 |
| MS.gene62104.t1 | MTR_7g026550 | 33.065 | 248 | 82 | 8 | 294 | 540 | 18 | 182 | 3.57e-23 | 102 |
| MS.gene62104.t1 | MTR_3g084600 | 45.902 | 122 | 34 | 3 | 319 | 440 | 15 | 104 | 2.41e-20 | 89.4 |
| MS.gene62104.t1 | MTR_4g032945 | 60.417 | 48 | 19 | 0 | 1 | 48 | 1 | 48 | 4.63e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62104.t1 | AT5G20420 | 43.143 | 350 | 150 | 8 | 252 | 557 | 486 | 830 | 3.16e-76 | 263 |
| MS.gene62104.t1 | AT5G20420 | 37.654 | 162 | 88 | 4 | 3 | 163 | 97 | 246 | 4.43e-23 | 104 |
| MS.gene62104.t1 | AT3G42670 | 42.197 | 346 | 160 | 7 | 251 | 557 | 480 | 824 | 7.44e-74 | 256 |
| MS.gene62104.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.58e-19 | 91.3 |
| MS.gene62104.t1 | AT3G42670 | 42.197 | 346 | 160 | 7 | 251 | 557 | 480 | 824 | 7.44e-74 | 256 |
| MS.gene62104.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.58e-19 | 91.3 |
| MS.gene62104.t1 | AT3G42670 | 42.197 | 346 | 160 | 7 | 251 | 557 | 480 | 824 | 7.44e-74 | 256 |
| MS.gene62104.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.58e-19 | 91.3 |
| MS.gene62104.t1 | AT3G42670 | 51.429 | 245 | 113 | 4 | 318 | 557 | 583 | 826 | 1.71e-73 | 255 |
| MS.gene62104.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 7.59e-19 | 91.3 |
| MS.gene62104.t1 | AT1G05490 | 37.634 | 186 | 104 | 4 | 319 | 497 | 735 | 915 | 1.77e-36 | 145 |
| MS.gene62104.t1 | AT3G24340 | 36.111 | 180 | 111 | 3 | 320 | 497 | 491 | 668 | 2.47e-32 | 133 |
| MS.gene62104.t1 | AT2G16390 | 32.768 | 177 | 99 | 2 | 316 | 492 | 271 | 427 | 4.98e-24 | 107 |
| MS.gene62104.t1 | AT2G16390 | 32.768 | 177 | 99 | 2 | 316 | 492 | 268 | 424 | 5.72e-24 | 107 |
| MS.gene62104.t1 | AT2G21450 | 32.597 | 181 | 94 | 5 | 316 | 492 | 190 | 346 | 5.98e-22 | 100 |
| MS.gene62104.t1 | AT2G21450 | 32.597 | 181 | 94 | 5 | 316 | 492 | 183 | 339 | 6.21e-22 | 100 |
| MS.gene62104.t1 | AT2G21450 | 32.597 | 181 | 94 | 5 | 316 | 492 | 92 | 248 | 7.76e-22 | 100 |
Find 85 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGATACCATTAGAATT+TGG | 0.209817 | 5.1:+37842838 | None:intergenic |
| CCAGGTAGAACCATTGATTT+TGG | 0.226511 | 5.1:+37842865 | None:intergenic |
| TTAATCTTCTGTTCTCATTA+AGG | 0.232024 | 5.1:+37842735 | None:intergenic |
| TATCGATTGGATGAACAAAT+TGG | 0.242680 | 5.1:-37843721 | MS.gene62104:CDS |
| CCACAATCTAGGTTACTTTC+CGG | 0.284693 | 5.1:-37844814 | MS.gene62104:CDS |
| CAAGATTGTGTATGAAGTTA+TGG | 0.284889 | 5.1:-37844713 | MS.gene62104:CDS |
| CCAAAGAAAATGACAGTGTT+TGG | 0.290902 | 5.1:-37843227 | MS.gene62104:CDS |
| TAATGGTATCAAGCATGATT+TGG | 0.292292 | 5.1:-37842830 | MS.gene62104:CDS |
| TGTTACCGCGTCATCTTTAA+AGG | 0.296633 | 5.1:-37844764 | MS.gene62104:CDS |
| GGTAGGTGGAAAGGCTAAAA+TGG | 0.309089 | 5.1:-37843353 | MS.gene62104:intron |
| TTGAAGTTCAAAACATTCAT+AGG | 0.322383 | 5.1:+37844667 | None:intergenic |
| TCAACTGATGCTACTAATCT+TGG | 0.333239 | 5.1:-37843261 | MS.gene62104:CDS |
| GAGTGGTCCAAAGGTTAATA+AGG | 0.365464 | 5.1:-37844626 | MS.gene62104:CDS |
| CGTCTTTCTTCACTGATAGT+TGG | 0.366946 | 5.1:+37844256 | None:intergenic |
| CCTTCTTCATCACATGATAA+TGG | 0.368117 | 5.1:+37844532 | None:intergenic |
| GCTCTTCATTGCCACAATCT+AGG | 0.368231 | 5.1:-37844825 | MS.gene62104:CDS |
| TAGCCCATGACAAGAACAAT+AGG | 0.384093 | 5.1:+37842772 | None:intergenic |
| TTCATAGGACCACTAATATT+AGG | 0.384672 | 5.1:+37844682 | None:intergenic |
| CATGTGTAGAGTGTGGTCTT+TGG | 0.395080 | 5.1:+37842970 | None:intergenic |
| CACAATCTAGGTTACTTTCC+GGG | 0.397509 | 5.1:-37844813 | MS.gene62104:CDS |
| GAAACAAAGCAGTGAACATA+TGG | 0.398738 | 5.1:-37843319 | MS.gene62104:CDS |
| CCTGGAGTTCCAAATTCTAA+TGG | 0.399610 | 5.1:-37842847 | MS.gene62104:CDS |
| TTGGTGTCGTCGAATGTCTC+TGG | 0.405539 | 5.1:+37842884 | None:intergenic |
| AAGAAAGAGGATAATGTGAT+TGG | 0.408479 | 5.1:-37844961 | MS.gene62104:CDS |
| GTCTTTGGAGCTAGGACTAA+TGG | 0.409580 | 5.1:+37842985 | None:intergenic |
| CACCCTATTGTTCTTGTCAT+GGG | 0.413983 | 5.1:-37842775 | MS.gene62104:CDS |
| CAAAGAAAATGACAGTGTTT+GGG | 0.414944 | 5.1:-37843226 | MS.gene62104:CDS |
| AAGAAAAGAGATGGTGAGAA+AGG | 0.416344 | 5.1:+37843041 | None:intergenic |
| AAGATTGTGTATGAAGTTAT+GGG | 0.424794 | 5.1:-37844712 | MS.gene62104:CDS |
| ATCATGTTCACATGTTTCCT+TGG | 0.426716 | 5.1:+37843744 | None:intergenic |
| GGCAATTATCCTAATATTAG+TGG | 0.431684 | 5.1:-37844691 | MS.gene62104:CDS |
| ACACCCTATTGTTCTTGTCA+TGG | 0.436213 | 5.1:-37842776 | MS.gene62104:CDS |
| GATAATGGAGACTCATTGTA+TGG | 0.461722 | 5.1:+37844547 | None:intergenic |
| ATATCTCATGCTCCTGGAGC+TGG | 0.462480 | 5.1:-37843069 | MS.gene62104:CDS |
| GCGGTTCTGTAAGGAGCATA+TGG | 0.471624 | 5.1:-37844461 | MS.gene62104:CDS |
| TATCGATGATCATAAAGAAC+AGG | 0.472137 | 5.1:-37844374 | MS.gene62104:CDS |
| CCATTAGAATTTGGAACTCC+AGG | 0.476634 | 5.1:+37842847 | None:intergenic |
| AGAGTGTGGTCTTTGGAGCT+AGG | 0.489103 | 5.1:+37842977 | None:intergenic |
| GCAGAAGAAAGAAAACGTAT+TGG | 0.496020 | 5.1:-37844227 | MS.gene62104:CDS |
| AATAAGGAAAATCAGTTGAC+TGG | 0.505533 | 5.1:-37844610 | MS.gene62104:CDS |
| ACGAAGAAGGCGGTTCTGTA+AGG | 0.505948 | 5.1:-37844470 | MS.gene62104:CDS |
| AACTTCAAATCCTGTGATGA+TGG | 0.524328 | 5.1:-37844652 | MS.gene62104:CDS |
| TAACAATTTCTGCACGAAGA+AGG | 0.525323 | 5.1:-37844483 | MS.gene62104:CDS |
| TGTGTTATATCTCATGCTCC+TGG | 0.525908 | 5.1:-37843075 | MS.gene62104:CDS |
| TGGATAAGATACACCGGCAT+GGG | 0.541181 | 5.1:+37842919 | None:intergenic |
| TTGGATCTTCTTCAGATGGT+AGG | 0.545112 | 5.1:+37844275 | None:intergenic |
| ATAGTTGGATCTTCTTCAGA+TGG | 0.550685 | 5.1:+37844271 | None:intergenic |
| GGAAGTAATTGATGCTTACA+TGG | 0.555455 | 5.1:-37844311 | MS.gene62104:CDS |
| AGCATCAATTACTTCCTCGC+AGG | 0.555873 | 5.1:+37844318 | None:intergenic |
| CCAAAATCAATGGTTCTACC+TGG | 0.556365 | 5.1:-37842865 | MS.gene62104:CDS |
| ATATCCAATGGTAGGTGGAA+AGG | 0.558302 | 5.1:-37843362 | MS.gene62104:intron |
| GTCTCTGGCTTCGACAGATG+TGG | 0.558594 | 5.1:+37842899 | None:intergenic |
| TTCGACGACACCAAAATCAA+TGG | 0.558930 | 5.1:-37842875 | MS.gene62104:CDS |
| ACCACTCTTACCATCATCAC+AGG | 0.562701 | 5.1:+37844642 | None:intergenic |
| TGACACAAATAAAGAATCCA+AGG | 0.564564 | 5.1:-37843761 | MS.gene62104:CDS |
| AGCCCATGACAAGAACAATA+GGG | 0.568333 | 5.1:+37842773 | None:intergenic |
| GGTTTCATATGTCATAAGAT+CGG | 0.570324 | 5.1:-37844743 | MS.gene62104:CDS |
| CCATTATCATGTGATGAAGA+AGG | 0.574271 | 5.1:-37844532 | MS.gene62104:CDS |
| AAAATGGAATGTTCCCATGC+CGG | 0.580266 | 5.1:-37842932 | MS.gene62104:CDS |
| CTTCAACGAAATAACTGTGA+AGG | 0.592014 | 5.1:-37844910 | MS.gene62104:CDS |
| ATAACTTACAAGAAAAGAGA+TGG | 0.597163 | 5.1:+37843032 | None:intergenic |
| CCGGAAAGTAACCTAGATTG+TGG | 0.605716 | 5.1:+37844814 | None:intergenic |
| TATGATGATCAAGGTTCACA+TGG | 0.609118 | 5.1:-37845003 | MS.gene62104:CDS |
| GTATACAAAAGATCAAAAGC+AGG | 0.610004 | 5.1:-37842804 | MS.gene62104:CDS |
| GGAATATACTGCCGTACATG+CGG | 0.610029 | 5.1:-37843700 | MS.gene62104:CDS |
| CGTATTGGAAAGCGGTGGTG+AGG | 0.610073 | 5.1:-37844212 | MS.gene62104:intron |
| AGATGACGCGGTAACAAACC+AGG | 0.611437 | 5.1:+37844771 | None:intergenic |
| GCAGGGTGCAAATGCTGATG+AGG | 0.611917 | 5.1:-37843791 | MS.gene62104:intron |
| CAAAGACCACACTCTACACA+TGG | 0.613075 | 5.1:-37842969 | MS.gene62104:CDS |
| CATAAAGAACAGGATCATAG+AGG | 0.617267 | 5.1:-37844364 | MS.gene62104:CDS |
| GTGGATAAGATACACCGGCA+TGG | 0.619432 | 5.1:+37842918 | None:intergenic |
| CAACTATCAGTGAAGAAAGA+CGG | 0.622612 | 5.1:-37844255 | MS.gene62104:CDS |
| GAACATTTATTATATTTGTG+AGG | 0.623911 | 5.1:+37845048 | None:intergenic |
| CAATTTCTGCACGAAGAAGG+CGG | 0.628751 | 5.1:-37844480 | MS.gene62104:CDS |
| ATGTGAACATGATTATCGAT+TGG | 0.633134 | 5.1:-37843734 | MS.gene62104:CDS |
| TGATGGTAAGAGTGGTCCAA+AGG | 0.634249 | 5.1:-37844635 | MS.gene62104:CDS |
| TCCTGTGATGATGGTAAGAG+TGG | 0.654377 | 5.1:-37844643 | MS.gene62104:CDS |
| AAAGAACAGGATCATAGAGG+TGG | 0.669391 | 5.1:-37844361 | MS.gene62104:CDS |
| TAGATTGTGGCAATGAAGAG+CGG | 0.677170 | 5.1:+37844827 | None:intergenic |
| AAAGAAAACGTATTGGAAAG+CGG | 0.682656 | 5.1:-37844220 | MS.gene62104:CDS |
| CAGATGTGGATAAGATACAC+CGG | 0.687722 | 5.1:+37842913 | None:intergenic |
| TTATCATGTGATGAAGAAGG+TGG | 0.694141 | 5.1:-37844529 | MS.gene62104:CDS |
| TGAAACCTTTAAAGATGACG+CGG | 0.702218 | 5.1:+37844759 | None:intergenic |
| GAAAACGTATTGGAAAGCGG+TGG | 0.722789 | 5.1:-37844217 | MS.gene62104:CDS |
| GTTAAATGCTGATACCTGCG+AGG | 0.758695 | 5.1:-37844332 | MS.gene62104:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGACAATTATGATTTAT+AGG | - | chr5.1:37843897-37843916 | MS.gene62104:intron | 15.0% |
| !!! | GATTTAAATACTTTGTTTTT+TGG | - | chr5.1:37843952-37843971 | MS.gene62104:intron | 15.0% |
| !! | GAACATTTATTATATTTGTG+AGG | + | chr5.1:37842777-37842796 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTCAATTTCTT+TGG | - | chr5.1:37844661-37844680 | MS.gene62104:CDS | 20.0% |
| !!! | GTAAAACATTTTATACAGAT+AGG | + | chr5.1:37843802-37843821 | None:intergenic | 20.0% |
| !!! | TAATTACAAGTTTGAAATCA+TGG | + | chr5.1:37844336-37844355 | None:intergenic | 20.0% |
| !!! | TATGGATTCGATAATTTTAT+TGG | - | chr5.1:37843379-37843398 | MS.gene62104:intron | 20.0% |
| !!! | TGGTTTTATCTTCTATTTTA+AGG | - | chr5.1:37843972-37843991 | MS.gene62104:intron | 20.0% |
| ! | AAAACATATCCAACCAAATA+AGG | + | chr5.1:37844376-37844395 | None:intergenic | 25.0% |
| ! | AAGATTGTGTATGAAGTTAT+GGG | - | chr5.1:37843110-37843129 | MS.gene62104:CDS | 25.0% |
| ! | ACAAGTAAAAGACAAGAAAT+GGG | + | chr5.1:37843741-37843760 | None:intergenic | 25.0% |
| ! | ACTGTCAACAAAATCATAAT+CGG | - | chr5.1:37843822-37843841 | MS.gene62104:intron | 25.0% |
| ! | ATAACTTACAAGAAAAGAGA+TGG | + | chr5.1:37844793-37844812 | None:intergenic | 25.0% |
| ! | GTTGTCTAATTTATATCCAA+TGG | - | chr5.1:37844448-37844467 | MS.gene62104:CDS | 25.0% |
| ! | TCTAATTTATATCCAATGGT+AGG | - | chr5.1:37844452-37844471 | MS.gene62104:CDS | 25.0% |
| ! | TTAATCTTCTGTTCTCATTA+AGG | + | chr5.1:37845090-37845109 | None:intergenic | 25.0% |
| ! | TTGAAGTTCAAAACATTCAT+AGG | + | chr5.1:37843158-37843177 | None:intergenic | 25.0% |
| !! | AAGTTTCAAAGTGTAACTTT+TGG | + | chr5.1:37844275-37844294 | None:intergenic | 25.0% |
| !! | AATAAAAACTCTGAAGAAAG+AGG | - | chr5.1:37842848-37842867 | MS.gene62104:CDS | 25.0% |
| !! | AGTTTTTACTTGACTTACAA+TGG | + | chr5.1:37844183-37844202 | None:intergenic | 25.0% |
| !! | GTTCAGAAGTTAATTCTTTT+AGG | - | chr5.1:37842955-37842974 | MS.gene62104:CDS | 25.0% |
| !! | GTTTTTACTTGACTTACAAT+GGG | + | chr5.1:37844182-37844201 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTATTAACCTT+TGG | + | chr5.1:37843206-37843225 | None:intergenic | 25.0% |
| !! | TGTAACTTTAGTTCCTTATT+TGG | - | chr5.1:37844360-37844379 | MS.gene62104:CDS | 25.0% |
| !!! | AAGGTGGTTATATTGTTTTT+CGG | - | chr5.1:37843309-37843328 | MS.gene62104:CDS | 25.0% |
| !!! | AGAAGTTAATTCTTTTAGGT+GGG | - | chr5.1:37842959-37842978 | MS.gene62104:CDS | 25.0% |
| !!! | AGTTATTTCGTTGAAGTTTT+TGG | + | chr5.1:37842908-37842927 | None:intergenic | 25.0% |
| !!! | ATCTTCTATTTTAAGGCTAA+AGG | - | chr5.1:37843979-37843998 | MS.gene62104:intron | 25.0% |
| !!! | GAAATTGAAAAGCTTTTTTC+TGG | + | chr5.1:37844659-37844678 | None:intergenic | 25.0% |
| !!! | GTAAAGTTTTATGATGATCA+AGG | - | chr5.1:37842810-37842829 | MS.gene62104:CDS | 25.0% |
| AAAGAAAAATCTGACACAAC+TGG | - | chr5.1:37844720-37844739 | MS.gene62104:CDS | 30.0% | |
| AAAGAAAACGTATTGGAAAG+CGG | - | chr5.1:37843602-37843621 | MS.gene62104:intron | 30.0% | |
| AACTCTTAAATACCATAGCA+GGG | - | chr5.1:37844014-37844033 | MS.gene62104:intron | 30.0% | |
| AAGAAAGAGGATAATGTGAT+TGG | - | chr5.1:37842861-37842880 | MS.gene62104:CDS | 30.0% | |
| AATAAGGAAAATCAGTTGAC+TGG | - | chr5.1:37843212-37843231 | MS.gene62104:CDS | 30.0% | |
| AATTTATATCCAATGGTAGG+TGG | - | chr5.1:37844455-37844474 | MS.gene62104:CDS | 30.0% | |
| ACATCAAGTTATCTTCTTGA+TGG | - | chr5.1:37843686-37843705 | MS.gene62104:CDS | 30.0% | |
| ATGTGAACATGATTATCGAT+TGG | - | chr5.1:37844088-37844107 | MS.gene62104:intron | 30.0% | |
| CAAAGAAAATGACAGTGTTT+GGG | - | chr5.1:37844596-37844615 | MS.gene62104:CDS | 30.0% | |
| CAAGATTGTGTATGAAGTTA+TGG | - | chr5.1:37843109-37843128 | MS.gene62104:CDS | 30.0% | |
| GACAAGTAAAAGACAAGAAA+TGG | + | chr5.1:37843742-37843761 | None:intergenic | 30.0% | |
| GACTGACATATAGAAAGAAA+TGG | - | chr5.1:37843652-37843671 | MS.gene62104:intron | 30.0% | |
| GGCAATTATCCTAATATTAG+TGG | - | chr5.1:37843131-37843150 | MS.gene62104:CDS | 30.0% | |
| GGTTTCATATGTCATAAGAT+CGG | - | chr5.1:37843079-37843098 | MS.gene62104:CDS | 30.0% | |
| GTATACAAAAGATCAAAAGC+AGG | - | chr5.1:37845018-37845037 | MS.gene62104:CDS | 30.0% | |
| TAATGGTATCAAGCATGATT+TGG | - | chr5.1:37844992-37845011 | MS.gene62104:CDS | 30.0% | |
| TATATGTCAGTCAAATCATC+AGG | + | chr5.1:37843644-37843663 | None:intergenic | 30.0% | |
| TATCGATGATCATAAAGAAC+AGG | - | chr5.1:37843448-37843467 | MS.gene62104:intron | 30.0% | |
| TGACACAAATAAAGAATCCA+AGG | - | chr5.1:37844061-37844080 | MS.gene62104:intron | 30.0% | |
| TGCTTGATACCATTAGAATT+TGG | + | chr5.1:37844987-37845006 | None:intergenic | 30.0% | |
| TTATCTTCTTGATGGAAATG+AGG | - | chr5.1:37843694-37843713 | MS.gene62104:CDS | 30.0% | |
| TTCAACCATAAATGGTTCAA+CGG | + | chr5.1:37843860-37843879 | None:intergenic | 30.0% | |
| TTCATAGGACCACTAATATT+AGG | + | chr5.1:37843143-37843162 | None:intergenic | 30.0% | |
| ! | ACTTTAGTTCCTTATTTGGT+TGG | - | chr5.1:37844364-37844383 | MS.gene62104:CDS | 30.0% |
| ! | CAGAAGTTAATTCTTTTAGG+TGG | - | chr5.1:37842958-37842977 | MS.gene62104:CDS | 30.0% |
| ! | TAGTTGACTTCAACCATAAA+TGG | + | chr5.1:37843868-37843887 | None:intergenic | 30.0% |
| ! | TATCGATTGGATGAACAAAT+TGG | - | chr5.1:37844101-37844120 | MS.gene62104:intron | 30.0% |
| ! | TTACAAGTTTGAAATCATGG+TGG | + | chr5.1:37844333-37844352 | None:intergenic | 30.0% |
| ! | TTCTTTGGAAAAACATTGCA+GGG | - | chr5.1:37844676-37844695 | MS.gene62104:CDS | 30.0% |
| ! | TTGTTACACGTTTTCTCATT+TGG | - | chr5.1:37844426-37844445 | MS.gene62104:CDS | 30.0% |
| ! | TTTCTTTGGAAAAACATTGC+AGG | - | chr5.1:37844675-37844694 | MS.gene62104:CDS | 30.0% |
| !! | AGGTGGTTATATTGTTTTTC+GGG | - | chr5.1:37843310-37843329 | MS.gene62104:CDS | 30.0% |
| !! | TATTTCGTTGAAGTTTTTGG+AGG | + | chr5.1:37842905-37842924 | None:intergenic | 30.0% |
| !!! | CTGTCATTTTCTTTGGATAT+TGG | + | chr5.1:37844591-37844610 | None:intergenic | 30.0% |
| AACTTCAAATCCTGTGATGA+TGG | - | chr5.1:37843170-37843189 | MS.gene62104:CDS | 35.0% | |
| AAGAAAAGAGATGGTGAGAA+AGG | + | chr5.1:37844784-37844803 | None:intergenic | 35.0% | |
| AAGATCAGACAAAAACTTCC+CGG | + | chr5.1:37843030-37843049 | None:intergenic | 35.0% | |
| ATAGTTGGATCTTCTTCAGA+TGG | + | chr5.1:37843554-37843573 | None:intergenic | 35.0% | |
| ATCATGTTCACATGTTTCCT+TGG | + | chr5.1:37844081-37844100 | None:intergenic | 35.0% | |
| ATTGACCGTTGAACCATTTA+TGG | - | chr5.1:37843852-37843871 | MS.gene62104:intron | 35.0% | |
| CAACTATCAGTGAAGAAAGA+CGG | - | chr5.1:37843567-37843586 | MS.gene62104:intron | 35.0% | |
| CAACTCTTAAATACCATAGC+AGG | - | chr5.1:37844013-37844032 | MS.gene62104:intron | 35.0% | |
| CATAAAGAACAGGATCATAG+AGG | - | chr5.1:37843458-37843477 | MS.gene62104:intron | 35.0% | |
| CCAAAGAAAATGACAGTGTT+TGG | - | chr5.1:37844595-37844614 | MS.gene62104:CDS | 35.0% | |
| CCATTATCATGTGATGAAGA+AGG | - | chr5.1:37843290-37843309 | MS.gene62104:CDS | 35.0% | |
| CCTTCTTCATCACATGATAA+TGG | + | chr5.1:37843293-37843312 | None:intergenic | 35.0% | |
| CTTCAACGAAATAACTGTGA+AGG | - | chr5.1:37842912-37842931 | MS.gene62104:CDS | 35.0% | |
| GAAACAAAGCAGTGAACATA+TGG | - | chr5.1:37844503-37844522 | MS.gene62104:CDS | 35.0% | |
| GCAGAAGAAAGAAAACGTAT+TGG | - | chr5.1:37843595-37843614 | MS.gene62104:intron | 35.0% | |
| GGAAGTAATTGATGCTTACA+TGG | - | chr5.1:37843511-37843530 | MS.gene62104:intron | 35.0% | |
| GGCAAAAAGAGTTCGAAAAA+TGG | - | chr5.1:37844874-37844893 | MS.gene62104:CDS | 35.0% | |
| TAACAATTTCTGCACGAAGA+AGG | - | chr5.1:37843339-37843358 | MS.gene62104:CDS | 35.0% | |
| TATGATGATCAAGGTTCACA+TGG | - | chr5.1:37842819-37842838 | MS.gene62104:CDS | 35.0% | |
| TCAACTGATGCTACTAATCT+TGG | - | chr5.1:37844561-37844580 | MS.gene62104:CDS | 35.0% | |
| TTATCATGTGATGAAGAAGG+TGG | - | chr5.1:37843293-37843312 | MS.gene62104:CDS | 35.0% | |
| ! | AGTTTTTGTCTGATCTTTCC+TGG | - | chr5.1:37843033-37843052 | MS.gene62104:CDS | 35.0% |
| ! | TGAAACCTTTAAAGATGACG+CGG | + | chr5.1:37843066-37843085 | None:intergenic | 35.0% |
| !! | GATAATGGAGACTCATTGTA+TGG | + | chr5.1:37843278-37843297 | None:intergenic | 35.0% |
| !! | TAACTTTTGGAAAATCGCAG+TGG | + | chr5.1:37844262-37844281 | None:intergenic | 35.0% |
| !! | TGCATGTTTTCTTTGAGTTC+AGG | + | chr5.1:37844630-37844649 | None:intergenic | 35.0% |
| !! | TTCTTTTAGGTGGGATTCAT+CGG | - | chr5.1:37842968-37842987 | MS.gene62104:CDS | 35.0% |
| !!! | CCAAACACTGTCATTTTCTT+TGG | + | chr5.1:37844598-37844617 | None:intergenic | 35.0% |
| AAAATGGAATGTTCCCATGC+CGG | - | chr5.1:37844890-37844909 | MS.gene62104:CDS | 40.0% | |
| AAAGAACAGGATCATAGAGG+TGG | - | chr5.1:37843461-37843480 | MS.gene62104:intron | 40.0% | |
| ACACCCTATTGTTCTTGTCA+TGG | - | chr5.1:37845046-37845065 | MS.gene62104:CDS | 40.0% | |
| AGCCCATGACAAGAACAATA+GGG | + | chr5.1:37845052-37845071 | None:intergenic | 40.0% | |
| ATATCCAATGGTAGGTGGAA+AGG | - | chr5.1:37844460-37844479 | MS.gene62104:CDS | 40.0% | |
| CACCCTATTGTTCTTGTCAT+GGG | - | chr5.1:37845047-37845066 | MS.gene62104:CDS | 40.0% | |
| CAGATGTGGATAAGATACAC+CGG | + | chr5.1:37844912-37844931 | None:intergenic | 40.0% | |
| CCTGGAGTTCCAAATTCTAA+TGG | - | chr5.1:37844975-37844994 | MS.gene62104:CDS | 40.0% | |
| CGTCTTTCTTCACTGATAGT+TGG | + | chr5.1:37843569-37843588 | None:intergenic | 40.0% | |
| GAAAAACATTGCAGGGTCTA+TGG | - | chr5.1:37844683-37844702 | MS.gene62104:CDS | 40.0% | |
| GAAAAATCTGACACAACTGG+TGG | - | chr5.1:37844723-37844742 | MS.gene62104:CDS | 40.0% | |
| GAGTGGTCCAAAGGTTAATA+AGG | - | chr5.1:37843196-37843215 | MS.gene62104:CDS | 40.0% | |
| TAGATTGTGGCAATGAAGAG+CGG | + | chr5.1:37842998-37843017 | None:intergenic | 40.0% | |
| TAGCCCATGACAAGAACAAT+AGG | + | chr5.1:37845053-37845072 | None:intergenic | 40.0% | |
| TGAGGTGTGTGACTGAAATT+TGG | - | chr5.1:37843712-37843731 | MS.gene62104:CDS | 40.0% | |
| TGTGTTATATCTCATGCTCC+TGG | - | chr5.1:37844747-37844766 | MS.gene62104:CDS | 40.0% | |
| TGTTACCGCGTCATCTTTAA+AGG | - | chr5.1:37843058-37843077 | MS.gene62104:CDS | 40.0% | |
| TTCGACGACACCAAAATCAA+TGG | - | chr5.1:37844947-37844966 | MS.gene62104:CDS | 40.0% | |
| TTGGATCTTCTTCAGATGGT+AGG | + | chr5.1:37843550-37843569 | None:intergenic | 40.0% | |
| ! | CACAATCTAGGTTACTTTCC+GGG | - | chr5.1:37843009-37843028 | MS.gene62104:CDS | 40.0% |
| ! | CCAAAATCAATGGTTCTACC+TGG | - | chr5.1:37844957-37844976 | MS.gene62104:CDS | 40.0% |
| ! | CCACAATCTAGGTTACTTTC+CGG | - | chr5.1:37843008-37843027 | MS.gene62104:CDS | 40.0% |
| ! | CCATTAGAATTTGGAACTCC+AGG | + | chr5.1:37844978-37844997 | None:intergenic | 40.0% |
| ! | TTTTCACAAAGCCGCATGTA+CGG | + | chr5.1:37844136-37844155 | None:intergenic | 40.0% |
| ! | TTTTTGCCATGTGTAGAGTG+TGG | + | chr5.1:37844862-37844881 | None:intergenic | 40.0% |
| !! | GTTTGAAATCATGGTGGATC+TGG | + | chr5.1:37844327-37844346 | None:intergenic | 40.0% |
| !!! | CCAGGTAGAACCATTGATTT+TGG | + | chr5.1:37844960-37844979 | None:intergenic | 40.0% |
| ACCACTCTTACCATCATCAC+AGG | + | chr5.1:37843183-37843202 | None:intergenic | 45.0% | |
| AGCATCAATTACTTCCTCGC+AGG | + | chr5.1:37843507-37843526 | None:intergenic | 45.0% | |
| CAAAGACCACACTCTACACA+TGG | - | chr5.1:37844853-37844872 | MS.gene62104:CDS | 45.0% | |
| CAATTTCTGCACGAAGAAGG+CGG | - | chr5.1:37843342-37843361 | MS.gene62104:CDS | 45.0% | |
| CATGTGTAGAGTGTGGTCTT+TGG | + | chr5.1:37844855-37844874 | None:intergenic | 45.0% | |
| CCGGAAAGTAACCTAGATTG+TGG | + | chr5.1:37843011-37843030 | None:intergenic | 45.0% | |
| GAAAACGTATTGGAAAGCGG+TGG | - | chr5.1:37843605-37843624 | MS.gene62104:intron | 45.0% | |
| GCTCTTCATTGCCACAATCT+AGG | - | chr5.1:37842997-37843016 | MS.gene62104:CDS | 45.0% | |
| GGAATATACTGCCGTACATG+CGG | - | chr5.1:37844122-37844141 | MS.gene62104:intron | 45.0% | |
| GGTAGGTGGAAAGGCTAAAA+TGG | - | chr5.1:37844469-37844488 | MS.gene62104:CDS | 45.0% | |
| GTTAAATGCTGATACCTGCG+AGG | - | chr5.1:37843490-37843509 | MS.gene62104:intron | 45.0% | |
| TGATGGTAAGAGTGGTCCAA+AGG | - | chr5.1:37843187-37843206 | MS.gene62104:CDS | 45.0% | |
| TGGATAAGATACACCGGCAT+GGG | + | chr5.1:37844906-37844925 | None:intergenic | 45.0% | |
| ! | AGAAAGGTTTTTCCAGCTCC+AGG | + | chr5.1:37844768-37844787 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCCACCTACCAT+TGG | + | chr5.1:37844467-37844486 | None:intergenic | 45.0% |
| !! | GTCTTTGGAGCTAGGACTAA+TGG | + | chr5.1:37844840-37844859 | None:intergenic | 45.0% |
| !! | TCCTGTGATGATGGTAAGAG+TGG | - | chr5.1:37843179-37843198 | MS.gene62104:CDS | 45.0% |
| ACGAAGAAGGCGGTTCTGTA+AGG | - | chr5.1:37843352-37843371 | MS.gene62104:intron | 50.0% | |
| AGATGACGCGGTAACAAACC+AGG | + | chr5.1:37843054-37843073 | None:intergenic | 50.0% | |
| ATATCTCATGCTCCTGGAGC+TGG | - | chr5.1:37844753-37844772 | MS.gene62104:CDS | 50.0% | |
| GTGGATAAGATACACCGGCA+TGG | + | chr5.1:37844907-37844926 | None:intergenic | 50.0% | |
| TCAGCATTTGCACCCTGCTA+TGG | + | chr5.1:37844029-37844048 | None:intergenic | 50.0% | |
| ! | GCGGTTCTGTAAGGAGCATA+TGG | - | chr5.1:37843361-37843380 | MS.gene62104:intron | 50.0% |
| !! | AGAGTGTGGTCTTTGGAGCT+AGG | + | chr5.1:37844848-37844867 | None:intergenic | 50.0% |
| !! | TTGGTGTCGTCGAATGTCTC+TGG | + | chr5.1:37844941-37844960 | None:intergenic | 50.0% |
| CGTATTGGAAAGCGGTGGTG+AGG | - | chr5.1:37843610-37843629 | MS.gene62104:intron | 55.0% | |
| GCAGGGTGCAAATGCTGATG+AGG | - | chr5.1:37844031-37844050 | MS.gene62104:intron | 55.0% | |
| ! | GTCTCTGGCTTCGACAGATG+TGG | + | chr5.1:37844926-37844945 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 37842735 | 37845109 | 37842735 | ID=MS.gene62104 |
| chr5.1 | mRNA | 37842735 | 37845109 | 37842735 | ID=MS.gene62104.t1;Parent=MS.gene62104 |
| chr5.1 | exon | 37844213 | 37845109 | 37844213 | ID=MS.gene62104.t1.exon1;Parent=MS.gene62104.t1 |
| chr5.1 | CDS | 37844213 | 37845109 | 37844213 | ID=cds.MS.gene62104.t1;Parent=MS.gene62104.t1 |
| chr5.1 | exon | 37843660 | 37843809 | 37843660 | ID=MS.gene62104.t1.exon2;Parent=MS.gene62104.t1 |
| chr5.1 | CDS | 37843660 | 37843809 | 37843660 | ID=cds.MS.gene62104.t1;Parent=MS.gene62104.t1 |
| chr5.1 | exon | 37842735 | 37843370 | 37842735 | ID=MS.gene62104.t1.exon3;Parent=MS.gene62104.t1 |
| chr5.1 | CDS | 37842735 | 37843370 | 37842735 | ID=cds.MS.gene62104.t1;Parent=MS.gene62104.t1 |
| Gene Sequence |
| Protein sequence |
