AlfalfaGEDB | MS.gene62217

M. sativa cultivar XinJiangDaYe / MS.gene62217

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62217.t1	XP_013460665.1	95.9	221	8	1	1	220	107	327	1.60E-108	402.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62217.t1	Q65XV8	65.3	199	67	2	1	197	181	379	1.1e-65	251.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62217.t1	A0A072V936	95.9	221	8	1	1	220	187	407	1.2e-108	402.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62217.t1	MTR_3g067795	95.928	221	8	1	1	220	107	327	3.62e-140	395
MS.gene62217.t1	MTR_3g067795	95.928	221	8	1	1	220	187	407	2.20e-139	396
MS.gene62217.t1	MTR_3g067795	93.839	211	12	1	1	210	107	317	5.91e-137	387
MS.gene62217.t1	MTR_3g067795	93.839	211	12	1	1	210	187	397	3.65e-136	387
MS.gene62217.t1	MTR_5g079840	71.429	189	52	2	1	187	186	374	3.67e-95	284
MS.gene62217.t1	MTR_2g096950	71.591	176	49	1	1	175	185	360	6.96e-90	270
MS.gene62217.t1	MTR_7g061660	59.817	219	79	3	1	216	184	396	6.68e-83	252
MS.gene62217.t1	MTR_2g041960	62.778	180	66	1	1	179	185	364	8.03e-76	238
MS.gene62217.t1	MTR_8g100155	58.333	192	79	1	1	191	177	368	1.23e-75	233
MS.gene62217.t1	MTR_4g115120	60.989	182	70	1	1	181	219	400	1.42e-74	232

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62217.t1	AT1G07570	65.946	185	62	1	1	184	63	247	6.40e-85	254
MS.gene62217.t1	AT1G07570	65.946	185	62	1	1	184	179	363	1.42e-83	254
MS.gene62217.t1	AT1G07570	65.946	185	62	1	1	184	179	363	1.42e-83	254
MS.gene62217.t1	AT1G07570	65.946	185	62	1	1	184	179	363	1.42e-83	254
MS.gene62217.t1	AT1G07570	65.946	185	62	1	1	184	190	374	3.30e-83	254
MS.gene62217.t1	AT2G28930	66.667	180	59	1	1	179	180	359	2.44e-82	251
MS.gene62217.t1	AT2G28930	66.667	180	59	1	1	179	183	362	3.02e-82	251
MS.gene62217.t1	AT2G28930	66.667	180	59	1	1	179	191	370	3.51e-82	251
MS.gene62217.t1	AT2G39660	61.236	178	68	1	1	177	178	355	2.95e-77	238
MS.gene62217.t1	AT5G02290	61.143	175	67	1	1	174	179	353	3.03e-77	237

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 44 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTTCTTCTACTGA+TGG	0.437033	3.2:-62412531	None:intergenic
AACTATAATGCAAAACTCTC+AGG	0.462373	3.2:+62411256	MS.gene62217:CDS
AAGAGCGATGTATATAATTT+TGG	0.122873	3.2:+62412118	MS.gene62217:CDS
AATCATGCTCTCCAGATGGT+CGG	0.646583	3.2:-62412189	None:intergenic
AATGCAAAACTCTCAGGTTT+TGG	0.230218	3.2:+62411262	MS.gene62217:CDS
ACAAGGATAATGGGCACACC+AGG	0.571720	3.2:+62411325	MS.gene62217:CDS
ACATGACTCTTACCACCTTC+TGG	0.348384	3.2:-62411298	None:intergenic
ACTAAATCATGCTCTCCAGA+TGG	0.604988	3.2:-62412193	None:intergenic
AGAGCATGATTTAGTTGCAT+GGG	0.575299	3.2:+62412201	MS.gene62217:CDS
AGCAGTGGTTCAAAACAACA+TGG	0.693332	3.2:+62412439	MS.gene62217:CDS

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTATAATGCAAAACTCTC+AGG	+	chr3.2:62411256-62411275	MS.gene62217:CDS	30.0%
CAATGGGAAAAAAAAAGGTT+AGG	-	chr3.2:62412070-62412089	None:intergenic	30.0%
TAACTAATGTAGTGTATGCA+TGG	-	chr3.2:62411929-62411948	None:intergenic	30.0%
AGAGCATGATTTAGTTGCAT+GGG	+	chr3.2:62412201-62412220	MS.gene62217:CDS	35.0%
ATAGCTCTTGATTCTGCTAA+GGG	+	chr3.2:62411080-62411099	MS.gene62217:CDS	35.0%
ATATAGACCAACCATTGAAG+AGG	+	chr3.2:62412354-62412373	MS.gene62217:CDS	35.0%
ATCAATTCCTTCAAAATCGG+CGG	+	chr3.2:62411886-62411905	MS.gene62217:intron	35.0%
ATGACCATTTGCTTTGTCAT+TGG	-	chr3.2:62412410-62412429	None:intergenic	35.0%
CATGTCTCTACAAGGATAAT+GGG	+	chr3.2:62411316-62411335	MS.gene62217:CDS	35.0%
GACCACAAACTAGTTATGTT+TGG	+	chr3.2:62411630-62411649	MS.gene62217:intron	35.0%

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	62411074	62412540	62411074	ID=MS.gene62217
chr3.2	mRNA	62411074	62412540	62411074	ID=MS.gene62217.t1;Parent=MS.gene62217
chr3.2	exon	62411074	62411178	62411074	ID=MS.gene62217.t1.exon1;Parent=MS.gene62217.t1
chr3.2	CDS	62411074	62411178	62411074	ID=cds.MS.gene62217.t1;Parent=MS.gene62217.t1
chr3.2	exon	62411256	62411376	62411256	ID=MS.gene62217.t1.exon2;Parent=MS.gene62217.t1
chr3.2	CDS	62411256	62411376	62411256	ID=cds.MS.gene62217.t1;Parent=MS.gene62217.t1
chr3.2	exon	62412104	62412540	62412104	ID=MS.gene62217.t1.exon3;Parent=MS.gene62217.t1
chr3.2	CDS	62412104	62412540	62412104	ID=cds.MS.gene62217.t1;Parent=MS.gene62217.t1

Gene Sequence

>MS.gene62217

ATGAAGATAGCTCTTGATTCTGCTAAGGGTCTTGCATTTCTTCACAGGGATGAAGTCGAAGTGATATATCGAGACTTCAAAACTTCTAACATCTTGATTGATTCTGTAAGTGAATTACGTTAATCTTACTAGGATTACTAATTAGAATTGCTTTGTAACATTCTTTTTTTGTTAACAAACAGAACTATAATGCAAAACTCTCAGGTTTTGGGATGGCAAAAGATCCAGAAGGTGGTAAGAGTCATGTCTCTACAAGGATAATGGGCACACCAGGCTATGCAGCTCCCGAGTATTTAGCCACAGGTATATTAATATTTATTCGAGCCAGTATCAGCAAATTATTTTTGCATTAATACTAATATATTTCTTCATATGATAGTGGATGAGAAATTTGAAAGTTATATATGTCCTGAACAATTATGACCAATATATTATTTGCACTATCAGATGCTGTCTACATTTTAACTCAAGTTCAATAAGCAACTTTACAATGACAGAAACCTCAGTCCTAAAATGTGGTTTAATAGCCAGACACCTCAGTCCTAAAATGTGGTTTGACCACAAACTAGTTATGTTTGGCTTCTGGTCCTAAAATTGATCCAGTCCCAAAGTCATTCTTGCCCAAAAGCTTAGAAAACTAGCTTTGTGATGAAATAATATCAATTCTCAAATTTATTAAAAATGCCAAATACATATACACACTCAAAAGCAATGTTCATTTAAACTATTCAAATGAAAATCAATAAAAATCACTTTTTTGTGATTTTATACAAACATAAATCACGTTACATTCAACTCACTTTTTGACCAAAATCAATTCCTTCAAAATCGGCGGGTTTCTTAACCATAGAACCATGCATACACTACATTAGTTACACTTCCCCTTCCCAACTACTACGTGCTGCTACTCCTCGCTATAGTAAGGTCTATAGTCAATAGTGATTGTTGCATCTTACAACAACATAATGAAAAAAATAATAATACAATTTCATTCCTAACCTTTTTTTTTCCCATTGTCTTTTATGTCAAGGCCACCTAACCAAAAAGAGCGATGTATATAATTTTGGGGTTGTTCTCCTAGAAATTATGTCAGGCAAACGTGTACTCGATAAAAACCGACCATCTGGAGAGCATGATTTAGTTGCATGGGCCAAGCCATTACTCATGAGCAACCGCAAGATCTCTCAAGTCATGGATGCTCGTATTGAAAGCCAATACTCGTCGCGTGAAGCAATTAAAGTAGCTCATGTTGCAATTCGATGTCTGTCGGCAGAACAAAAATATAGACCAACCATTGAAGAGGTGGTGAGATCGTTGGAACAACTTCAGGATTCCAATGACAAAGCAAATGGTCATAGCTCAAGCAGCAGTGGTTCAAAACAACATGGAAAAAGCGTCGATGAATCTTTAAGCGGAGAAGGTAATTCTAATATGAGTTCATCTGCTGCTTCACCTCTCCATCAGTAG

Protein sequence

>MS.gene62217.t1

MKIALDSAKGLAFLHRDEVEVIYRDFKTSNILIDSNYNAKLSGFGMAKDPEGGKSHVSTRIMGTPGYAAPEYLATGHLTKKSDVYNFGVVLLEIMSGKRVLDKNRPSGEHDLVAWAKPLLMSNRKISQVMDARIESQYSSREAIKVAHVAIRCLSAEQKYRPTIEEVVRSLEQLQDSNDKANGHSSSSSGSKQHGKSVDESLSGEGNSNMSSSAASPLHQ