AlfalfaGEDB | MS.gene62218

M. sativa cultivar XinJiangDaYe / MS.gene62218

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62218.t1	XP_013460663.1	64.9	373	14	2	25	280	20	392	9.30E-117	429.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62218.t1	O48814	42.5	332	74	2	41	255	27	358	2.0e-64	247.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62218.t1	A0A072V936	64.9	373	14	2	25	280	20	392	6.7e-117	429.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62218.t1	MTR_3g067795	92.857	140	10	0	25	164	20	159	4.82e-85	260
MS.gene62218.t1	MTR_3g067795	66.082	171	5	1	163	280	222	392	4.77e-60	196
MS.gene62218.t1	MTR_3g067795	92.857	140	10	0	25	164	20	159	6.42e-85	260
MS.gene62218.t1	MTR_3g067795	66.082	171	5	1	163	280	222	392	8.55e-60	195
MS.gene62218.t1	MTR_3g067780	54.812	239	104	3	23	258	1	238	7.80e-83	249
MS.gene62218.t1	MTR_3g067770	78.519	135	29	0	30	164	18	152	1.61e-72	224
MS.gene62218.t1	MTR_3g067770	78.519	135	29	0	30	164	18	152	1.34e-71	224
MS.gene62218.t1	MTR_3g067770	33.571	140	39	2	163	249	215	353	2.96e-12	66.2
MS.gene62218.t1	MTR_5g079840	39.489	352	95	5	25	258	18	369	2.83e-70	223
MS.gene62218.t1	MTR_3g067775	71.127	142	41	0	23	164	3	144	3.30e-66	208

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62218.t1	AT5G02290	64.029	139	44	1	26	164	19	151	1.07e-57	189
MS.gene62218.t1	AT5G02290	37.857	140	34	1	163	249	214	353	1.23e-22	96.7
MS.gene62218.t1	AT5G02290	64.029	139	44	1	26	164	19	151	1.07e-57	189
MS.gene62218.t1	AT5G02290	37.857	140	34	1	163	249	214	353	1.23e-22	96.7
MS.gene62218.t1	AT2G39660	72.414	116	32	0	49	164	35	150	1.16e-56	187
MS.gene62218.t1	AT2G39660	36.364	143	38	1	163	252	213	355	4.72e-23	97.8
MS.gene62218.t1	AT1G07570	64.615	130	45	1	35	164	23	151	8.62e-54	180
MS.gene62218.t1	AT1G07570	40.940	149	35	1	164	259	215	363	5.24e-25	103
MS.gene62218.t1	AT1G07570	64.615	130	45	1	35	164	23	151	8.62e-54	180
MS.gene62218.t1	AT1G07570	40.940	149	35	1	164	259	215	363	5.24e-25	103

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Find 64 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGACCAAACATTG+AGG	0.602053	3.2:+62360487	MS.gene62218:CDS
AAACCAGTATCTGGTTTAGT+AGG	0.468213	3.2:-62358694	None:intergenic
AAAGGTTGTTACTAGAGATG+AGG	0.601900	3.2:+62358459	MS.gene62218:CDS
AATGCAAAACTCTCGGATTT+TGG	0.108994	3.2:+62359506	MS.gene62218:CDS
ACAAGGATAATGGGCACCCC+AGG	0.555407	3.2:+62359572	MS.gene62218:CDS
ACATGACTCTTGCCACCTTC+TGG	0.348130	3.2:-62359545	None:intergenic
ACTCGGGAGCTGCATAGCCT+GGG	0.510010	3.2:-62359589	None:intergenic
ACTGATAGGTTACTGCTTAG+AGG	0.400003	3.2:+62359087	MS.gene62218:CDS
ACTGCTTAGAGGATGACTAC+CGG	0.656616	3.2:+62359098	MS.gene62218:CDS
AGAGATGAGGATGTTTCAAG+TGG	0.616028	3.2:+62358472	MS.gene62218:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGACAACGGGAAAAA+AGG	-	chr3.2:62360215-62360234	None:intergenic	30.0%
AAAATACAGACCAAACATTG+AGG	+	chr3.2:62360487-62360506	MS.gene62218:CDS	30.0%
AAAGGTTAGGAATGAAATTG+TGG	-	chr3.2:62360197-62360216	None:intergenic	30.0%
AATCAAGAGCTATCTTCATT+CGG	-	chr3.2:62359319-62359338	None:intergenic	30.0%
ATGATTATCCAAACTTCCTT+TGG	-	chr3.2:62359146-62359165	None:intergenic	30.0%
CAATACAGTAGATGAAAAGA+AGG	-	chr3.2:62358366-62358385	None:intergenic	30.0%
CTAAGTATACTAAAGTACGT+GGG	-	chr3.2:62359812-62359831	None:intergenic	30.0%
CTTAACAAAGAAAGCAATCA+GGG	+	chr3.2:62358736-62358755	MS.gene62218:CDS	30.0%
GAAAAAAGACTAATTGAAGG+AGG	-	chr3.2:62359195-62359214	None:intergenic	30.0%
GAACTATAATGCAAAACTCT+CGG	+	chr3.2:62359499-62359518	MS.gene62218:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	62358159	62360629	62358159	ID=MS.gene62218
chr3.2	mRNA	62358159	62360629	62358159	ID=MS.gene62218.t1;Parent=MS.gene62218
chr3.2	exon	62358159	62358231	62358159	ID=MS.gene62218.t1.exon1;Parent=MS.gene62218.t1
chr3.2	CDS	62358159	62358231	62358159	ID=cds.MS.gene62218.t1;Parent=MS.gene62218.t1
chr3.2	exon	62358449	62358774	62358449	ID=MS.gene62218.t1.exon2;Parent=MS.gene62218.t1
chr3.2	CDS	62358449	62358774	62358449	ID=cds.MS.gene62218.t1;Parent=MS.gene62218.t1
chr3.2	exon	62359040	62359126	62359040	ID=MS.gene62218.t1.exon3;Parent=MS.gene62218.t1
chr3.2	CDS	62359040	62359126	62359040	ID=cds.MS.gene62218.t1;Parent=MS.gene62218.t1
chr3.2	exon	62359500	62359623	62359500	ID=MS.gene62218.t1.exon4;Parent=MS.gene62218.t1
chr3.2	CDS	62359500	62359623	62359500	ID=cds.MS.gene62218.t1;Parent=MS.gene62218.t1
chr3.2	exon	62360399	62360629	62360399	ID=MS.gene62218.t1.exon5;Parent=MS.gene62218.t1
chr3.2	CDS	62360399	62360629	62360399	ID=cds.MS.gene62218.t1;Parent=MS.gene62218.t1

Gene Sequence

>MS.gene62218

ATGAGTTTGAACGATTTAATTCGTACAGTTCTTGAACTTGACGATCGTGATCTTATAACAGTTGGTTTTATAGGTGAAAGGTAGAGAAAGAGTGAGGGAAAAATCAATAATACAGAAAAATTTCTTCAAAAGAATGTAAGAAGTTTTCCTTTTCATGCACTTCTGAGATCCAATGTTTTACATAGCTGTAATGATCTTACCTTTCCTTCTTTTCATCTACTGTATTGGCCTCAATTATAGGATTATTGTTATTGAAAGAGTTGTGATATTTGTACAACCATTTGTGACAGGTTTGAATTCAAAGGTTGTTACTAGAGATGAGGATGTTTCAAGTGGTTTAAGCCGAAAGGCCTCTTCTTCATCTGTGCTTCTAAGCTCTAGGACTGAGGGCGAGATACTGCATTCAAACTATTTGAAGTGTTTCACTATCATTGAGATAAGAGCCGCAACAAGGAACTTTCGTCCAGATAGTATGATTGGCGAAGGTGGATTTGGTTGTGTATTTAAGGGTTGGATCGACGAGCACACACTAGCTCCTACTAAACCAGATACTGGTTTTGTTATTGCTGTGAAGAGGCTTAACAAAGAAAGCAATCAGGGACATAGTGAATGGTTGGTGTGTGTCATGTAGGCTCAATAATTTAGAATTTGATTGCACTTTGAAGTTATGAAAATATCAAATTAGTATTTAAACACAAGTTGTAATCTGTAACTTTAAGCTGGAATGATAGAAAATCACTGCAGCCACTATGCAGTTGGAGACATAGGCACAATTGACCAAACTCCGTGATCAAATCTTGTGCATTCTTTGTTTGCATTTTTTGAGTATGTTTTCTCTTGAACCAGGGTTGTTATTCTAACATTAACCATGTATTTCATAGACAGAAATCAATTACCTTGGACAGCTGCATCATCCAAATCTAGTGAAACTGATAGGTTACTGCTTAGAGGATGACTACCGGATTTTGGTATATCAATATGTGACCAAAGGAAGTTTGGATAATCATTTGTTTAGGAGTATGTTATTAACTTTCCTCCTTCAATTAGTCTTTTTTCCAAGCTTTTTTATCAGTTCTTTCATTTACTAGTAAGTATATTAAATCCCTCAAAATCTCATCTCTACCTAATGTTTATGGATCAGGAGCTTCTTGGAAAATCCGAATGAAGATAGCTCTTGATTCTGCCAAGGGTCTTGCATTTCTTCACAGTGATGAAAATATATCGAGACTTCAAAACTTCTAACATCTTGATTGATTCTGTAAGTGAATTACGTTGATCTTACTAATTAGAGAGATTACTAATTAGACTTGCGTTGTAACATTCCATTTTGTTAACAAACAGAACTATAATGCAAAACTCTCGGATTTTGGGATGGCAAAAGATGGACCAGAAGGTGGCAAGAGTCATGTCTCTACAAGGATAATGGGCACCCCAGGCTATGCAGCTCCCGAGTATCTAGCCACAGGTATCAGCAAATTATTTTTGCAAATATATTTCATCATATGATAGTGGATGAGAAATTTGAACCTGGAAGTTATATATGTGCAGAACAATTTAAGACCAATATATTATTTGCACTATCAATTTCATTGTGTTGAAACTACTAGGAAAAAGATAGTCTCTACTCGTTCGAATCGACATTTAATTCTTCCCACGTACTTTAGTATACTTAGACTCAGATGCTGTCTACATTTTAATTCAAATTCAACAAGCAATGCTGACAAAAACCCTCCACTTTTAGTACGCCTATGTTTGAATTCACGGCCAGACATGGAAGTCTTAAAACATGGTTTGACCACAAATTAGTTATGCTTGGCGTCTGGTCCCTTAAATTGTTCCAGTCCCAAAGTCAATTTTTCCAAAAATCTTAGATTTATAGCTTTCTGATGAAATCAATTTTCTTCACCACAGAACAATGTATTCACTACATGAGTTCACTTCCCCTCCCCAACTACTATGTGCTGCTACTCCTCGCTTTCGTAAGGTCTATAGTCAGTAGTGATTATTACATCTTACAACAACAGAATGAAAAAAACCACAATTTCATTCCTAACCTTTTTTCCCGTTGTCTTTTTTGTGAAGGTCACCTAACCAAAAAGAGCGATGTATACAGTTTCGGGGTCGTTCTCCTAGAAATCATGTCAGGGAAACGTGTATTGGATAAAAACCGACCATCTGGAGAGCATGATTTAGTTGCATGGGCCAAACCATTACTCATGAGCAACGCAAAATTTCCCAAGTCATGGATGCTCGTATAGAATGCGAATACTCGTCGCATGAAGCAATTAAGGTAGCTCATGTTGCAATTCGATGTCTGTCGGCAGAACAAAAATACAGACCAAACATTGAGGAGGTGGTGAGATCGTTGGAACAACTTCAGGATTCCAATGACAAAACAAATGGGCATAGCTTAAGCAGCAGTGGTTCAAAACAGCATGGAAAAAGCGTCGATGAATCTTTAAGTGGAGAAG

Protein sequence

>MS.gene62218.t1

MSLNDLIRTVLELDDRDLITVGFIGLNSKVVTRDEDVSSGLSRKASSSSVLLSSRTEGEILHSNYLKCFTIIEIRAATRNFRPDSMIGEGGFGCVFKGWIDEHTLAPTKPDTGFVIAVKRLNKESNQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDYRILNYNAKLSDFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATVMDARIECEYSSHEAIKVAHVAIRCLSAEQKYRPNIEEVVRSLEQLQDSNDKTNGHSLSSSGSKQHGKSVDESLSGE