AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62225

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62225.t1 MTR_3g067775 79.231 130 23 2 7 133 8 136 1.01e-65 201
MS.gene62225.t1 MTR_3g067780 76.119 134 26 4 7 135 6 138 1.75e-60 186
MS.gene62225.t1 MTR_3g067795 67.153 137 41 2 2 135 18 153 2.23e-55 178
MS.gene62225.t1 MTR_3g067795 67.153 137 41 2 2 135 18 153 2.27e-55 178
MS.gene62225.t1 MTR_3g067770 64.341 129 42 2 10 135 19 146 1.10e-51 165
MS.gene62225.t1 MTR_3g067770 64.341 129 42 2 10 135 19 146 7.84e-51 165
MS.gene62225.t1 MTR_5g079840 57.692 130 54 1 6 135 24 152 2.89e-45 152
MS.gene62225.t1 MTR_7g061660 64.545 110 38 1 26 135 42 150 4.52e-45 151
MS.gene62225.t1 MTR_2g096950 54.745 137 58 2 2 135 16 151 5.69e-43 146
MS.gene62225.t1 MTR_5g038870 62.617 107 39 1 29 135 48 153 3.71e-42 144
MS.gene62225.t1 MTR_3g067795 76.712 73 17 0 63 135 1 73 8.01e-36 125
MS.gene62225.t1 MTR_3g040800 52.459 122 57 1 12 133 63 183 8.79e-36 127
MS.gene62225.t1 MTR_8g469230 58.716 109 44 1 27 135 102 209 9.27e-36 128
MS.gene62225.t1 MTR_3g067795 76.712 73 17 0 63 135 1 73 9.30e-36 125
MS.gene62225.t1 MTR_8g073560 55.238 105 46 1 31 135 66 169 1.62e-35 124
MS.gene62225.t1 MTR_2g096970 54.206 107 48 1 29 135 33 138 8.86e-35 123
MS.gene62225.t1 MTR_8g073560 55.238 105 46 1 31 135 52 155 9.18e-35 124
MS.gene62225.t1 MTR_5g088400 57.944 107 44 1 27 133 40 145 9.34e-35 122
MS.gene62225.t1 MTR_6g011330 51.587 126 49 2 21 135 86 210 1.38e-34 125
MS.gene62225.t1 MTR_2g096960 52.679 112 41 1 24 135 49 148 2.11e-34 123
MS.gene62225.t1 MTR_5g038450 56.881 109 46 1 27 135 106 213 5.15e-34 123
MS.gene62225.t1 MTR_5g088400 57.944 107 44 1 27 133 40 145 6.79e-34 122
MS.gene62225.t1 MTR_4g063940 54.902 102 45 1 34 135 72 172 6.52e-33 119
MS.gene62225.t1 MTR_4g063935 56.075 107 46 1 29 135 65 170 7.42e-33 119
MS.gene62225.t1 MTR_7g009320 55.556 108 47 1 28 135 94 200 7.42e-33 120
MS.gene62225.t1 MTR_4g063935 56.075 107 46 1 29 135 85 190 8.15e-33 119
MS.gene62225.t1 MTR_3g067765 59.140 93 35 1 42 134 14 103 4.27e-32 115
MS.gene62225.t1 MTR_4g108270 50.467 107 52 1 29 135 57 162 5.71e-32 117
MS.gene62225.t1 MTR_4g063930 54.206 107 48 1 29 135 146 251 6.85e-32 117
MS.gene62225.t1 MTR_3g067770 76.119 67 16 0 69 135 7 73 1.12e-31 114
MS.gene62225.t1 MTR_4g115120 52.941 102 43 2 38 135 88 188 1.34e-30 114
MS.gene62225.t1 MTR_5g023980 49.020 102 51 1 34 135 68 168 1.73e-30 110
MS.gene62225.t1 MTR_5g023980 49.020 102 51 1 34 135 54 154 6.30e-30 111
MS.gene62225.t1 MTR_3g115490 50.000 108 52 2 28 135 54 159 6.56e-29 108
MS.gene62225.t1 MTR_4g063945 52.475 101 43 1 35 135 72 167 1.86e-28 107
MS.gene62225.t1 MTR_4g063945 52.475 101 43 1 35 135 74 169 1.88e-28 107
MS.gene62225.t1 MTR_6g011570 49.107 112 56 1 24 135 34 144 3.25e-28 107
MS.gene62225.t1 MTR_3g462840 47.368 114 54 2 27 135 29 141 1.04e-24 97.8
MS.gene62225.t1 MTR_4g126970 49.020 102 49 2 34 135 100 198 2.70e-24 96.7
MS.gene62225.t1 MTR_5g099130 47.170 106 50 2 28 133 65 164 2.95e-24 96.3
MS.gene62225.t1 MTR_5g099130 47.170 106 50 2 28 133 76 175 3.78e-24 95.9
MS.gene62225.t1 MTR_5g099130 47.170 106 50 2 28 133 72 171 3.88e-24 95.9
MS.gene62225.t1 MTR_2g075230 51.064 94 32 1 40 133 38 117 5.65e-23 92.4
MS.gene62225.t1 MTR_7g074610 50.000 92 42 2 44 135 78 165 9.74e-22 89.7
MS.gene62225.t1 MTR_8g100155 46.875 96 47 2 40 135 54 145 2.55e-21 88.2
MS.gene62225.t1 MTR_3g105320 44.444 99 51 2 37 135 62 156 3.47e-18 79.3
MS.gene62225.t1 MTR_4g125260 38.346 133 74 3 7 135 31 159 6.85e-18 79.0
MS.gene62225.t1 MTR_8g088410 45.192 104 40 4 39 135 54 147 1.76e-17 77.4
MS.gene62225.t1 MTR_1g015020 45.833 96 48 2 40 135 65 156 1.99e-17 77.4
MS.gene62225.t1 MTR_8g020920 45.098 102 46 3 37 135 59 153 2.37e-17 77.4
MS.gene62225.t1 MTR_5g026370 46.154 91 45 2 45 135 80 166 5.25e-17 76.3
MS.gene62225.t1 MTR_2g041960 40.678 118 63 4 20 135 41 153 1.02e-16 75.5
MS.gene62225.t1 MTR_1g063910 41.837 98 52 2 38 135 70 162 1.26e-16 75.1
MS.gene62225.t1 MTR_1g063910 41.837 98 52 2 38 135 79 171 1.32e-16 75.1
MS.gene62225.t1 MTR_7g101800 41.837 98 52 2 38 135 75 167 3.27e-16 73.9
MS.gene62225.t1 MTR_7g101800 41.837 98 52 2 38 135 87 179 3.30e-16 73.9
MS.gene62225.t1 MTR_7g101800 41.837 98 52 2 38 135 67 159 3.39e-16 73.9
MS.gene62225.t1 MTR_8g008820 42.857 98 43 3 38 131 57 145 7.29e-16 73.2
MS.gene62225.t1 MTR_1g079430 41.053 95 46 2 41 135 55 139 3.30e-15 71.2
MS.gene62225.t1 MTR_1g079430 41.053 95 46 2 41 135 55 139 3.53e-15 71.2
MS.gene62225.t1 MTR_2g022810 36.296 135 68 4 7 135 25 147 1.11e-14 69.7
MS.gene62225.t1 MTR_5g092120 45.161 93 42 2 43 135 56 139 1.12e-14 69.7
MS.gene62225.t1 MTR_3g050780 41.935 93 44 2 43 135 64 146 1.89e-14 68.9
MS.gene62225.t1 MTR_2g019990 41.935 93 44 2 43 135 75 157 2.37e-14 68.9
MS.gene62225.t1 MTR_4g063950 37.755 98 51 3 38 135 73 160 3.04e-14 68.6
MS.gene62225.t1 MTR_2g039290 37.383 107 56 2 27 133 1030 1125 3.24e-14 68.6
MS.gene62225.t1 MTR_2g039290 37.383 107 56 2 27 133 1042 1137 3.25e-14 68.6
MS.gene62225.t1 MTR_4g099130 39.362 94 52 2 38 131 50 138 3.34e-14 68.2
MS.gene62225.t1 MTR_2g039290 37.383 107 56 2 27 133 808 903 3.54e-14 68.6
MS.gene62225.t1 MTR_5g013610 38.393 112 62 3 21 131 28 133 3.60e-14 68.2
MS.gene62225.t1 MTR_7g116660 43.956 91 41 2 45 135 61 141 8.28e-14 67.4
MS.gene62225.t1 MTR_7g100500 40.860 93 45 2 43 135 59 141 1.19e-13 66.6
MS.gene62225.t1 MTR_1g117060 40.860 93 45 2 43 135 83 165 2.07e-13 66.2
MS.gene62225.t1 MTR_1g067140 39.785 93 46 2 43 135 60 142 2.49e-13 65.9
MS.gene62225.t1 MTR_4g126270 36.111 108 58 2 28 135 510 606 3.10e-13 65.9
MS.gene62225.t1 MTR_7g083500 40.206 97 48 2 39 135 62 148 3.44e-13 65.5
MS.gene62225.t1 MTR_3g115500 40.206 97 47 2 39 135 32 117 6.52e-13 64.3
MS.gene62225.t1 MTR_8g461260 37.374 99 51 2 37 135 26 113 6.59e-13 64.7
MS.gene62225.t1 MTR_3g115500 40.206 97 47 2 39 135 50 135 7.63e-13 64.3
MS.gene62225.t1 MTR_8g016330 38.679 106 54 2 28 133 435 529 8.37e-13 64.3
MS.gene62225.t1 MTR_2g074980 35.714 112 59 3 26 135 597 697 1.46e-12 63.9
MS.gene62225.t1 MTR_7g109670 37.864 103 53 2 28 130 351 442 1.72e-12 63.5
MS.gene62225.t1 MTR_3g007870 35.000 100 51 4 37 133 330 418 2.02e-12 63.2
MS.gene62225.t1 MTR_4g123490 58.140 43 18 0 93 135 13 55 2.90e-12 58.5
MS.gene62225.t1 MTR_7g073660 39.815 108 55 2 27 134 511 608 3.04e-12 62.8
MS.gene62225.t1 MTR_8g037700 40.860 93 44 2 43 135 517 598 3.28e-12 62.8
MS.gene62225.t1 MTR_8g059605 38.462 91 45 2 45 135 449 528 3.51e-12 62.8
MS.gene62225.t1 MTR_8g059605 38.462 91 45 2 45 135 644 723 3.55e-12 62.8
MS.gene62225.t1 MTR_4g111925 39.815 108 55 2 27 134 511 608 3.60e-12 62.8
MS.gene62225.t1 MTR_8g059615 38.462 91 45 2 45 135 627 706 3.65e-12 62.8
MS.gene62225.t1 MTR_5g083910 37.383 107 55 3 30 135 500 595 3.71e-12 62.8
MS.gene62225.t1 MTR_8g059615 38.462 91 45 2 45 135 627 706 3.79e-12 62.8
MS.gene62225.t1 MTR_8g058250 37.079 89 45 2 45 133 652 729 4.03e-12 62.4
MS.gene62225.t1 MTR_5g083910 37.383 107 55 3 30 135 632 727 4.10e-12 62.4
MS.gene62225.t1 MTR_8g058250 37.079 89 45 2 45 133 556 633 4.23e-12 62.4
MS.gene62225.t1 MTR_2g064930 35.644 101 54 2 35 135 24 113 4.94e-12 60.8
MS.gene62225.t1 MTR_4g131900 38.710 93 47 2 43 135 87 169 5.41e-12 62.0
MS.gene62225.t1 MTR_8g058250 37.079 89 45 2 45 133 652 729 6.04e-12 62.0
MS.gene62225.t1 MTR_2g075250 36.264 91 47 2 45 135 559 638 6.74e-12 62.0
MS.gene62225.t1 MTR_2g075250 36.264 91 47 2 45 135 654 733 7.27e-12 61.6
MS.gene62225.t1 MTR_2g095880 32.353 136 74 4 3 135 39 159 9.20e-12 61.2
MS.gene62225.t1 MTR_2g064930 35.644 101 54 2 35 135 24 113 9.74e-12 61.2
MS.gene62225.t1 MTR_3g062590 38.144 97 49 2 37 133 602 687 1.09e-11 61.2
MS.gene62225.t1 MTR_2g064930 35.644 101 54 2 35 135 24 113 1.10e-11 60.8
MS.gene62225.t1 MTR_1g080740 39.785 93 45 2 43 135 508 589 1.14e-11 61.2
MS.gene62225.t1 MTR_2g095880 32.353 136 74 4 3 135 39 159 1.23e-11 60.8
MS.gene62225.t1 MTR_5g095970 35.000 100 51 4 37 133 336 424 1.33e-11 60.8
MS.gene62225.t1 MTR_3g062570 36.082 97 51 2 37 133 349 434 1.34e-11 60.8
MS.gene62225.t1 MTR_7g115300 36.522 115 54 3 29 135 491 594 1.53e-11 60.8
MS.gene62225.t1 MTR_3g062570 36.082 97 51 2 37 133 485 570 1.65e-11 60.8
MS.gene62225.t1 MTR_7g062950 41.379 87 41 2 45 131 329 405 1.71e-11 60.8
MS.gene62225.t1 MTR_5g035910 39.080 87 43 2 45 131 334 410 1.79e-11 60.5
MS.gene62225.t1 MTR_7g062750 40.230 87 42 2 45 131 331 407 1.94e-11 60.5
MS.gene62225.t1 MTR_8g087740 36.735 98 51 2 38 135 653 739 2.17e-11 60.5
MS.gene62225.t1 MTR_7g058810 38.710 93 47 2 43 135 79 161 2.27e-11 60.1
MS.gene62225.t1 MTR_4g133920 35.000 120 55 3 16 135 4 100 2.30e-11 60.1
MS.gene62225.t1 MTR_7g068190 34.409 93 50 1 43 135 30 111 2.31e-11 60.1
MS.gene62225.t1 MTR_3g062570 36.082 97 51 2 37 133 600 685 2.42e-11 60.5
MS.gene62225.t1 MTR_4g118855 35.185 108 60 2 28 135 43 140 2.75e-11 60.1
MS.gene62225.t1 MTR_7g068150 35.165 91 48 1 43 133 352 431 3.32e-11 59.7
MS.gene62225.t1 MTR_1g086870 39.326 89 43 2 47 135 276 353 3.37e-11 59.7
MS.gene62225.t1 MTR_7g062770 41.379 87 41 2 45 131 333 409 3.46e-11 59.7
MS.gene62225.t1 MTR_3g067755 57.143 49 20 1 87 134 2 50 4.74e-11 55.1
MS.gene62225.t1 MTR_7g077780 37.778 90 44 3 45 134 526 603 5.37e-11 59.3
MS.gene62225.t1 MTR_5g091950 36.264 91 47 2 45 135 530 609 5.42e-11 59.3
MS.gene62225.t1 MTR_8g463990 32.075 106 61 2 30 135 17 111 5.68e-11 58.9
MS.gene62225.t1 MTR_5g091950 36.264 91 47 2 45 135 575 654 5.71e-11 59.3
MS.gene62225.t1 MTR_5g091950 36.264 91 47 2 45 135 665 744 6.10e-11 59.3
MS.gene62225.t1 MTR_2g064940 36.458 96 50 2 40 135 26 110 6.59e-11 58.9
MS.gene62225.t1 MTR_8g463990 32.075 106 61 2 30 135 17 111 6.83e-11 58.9
MS.gene62225.t1 MTR_5g077100 37.363 91 46 3 43 133 356 435 6.92e-11 58.9
MS.gene62225.t1 MTR_1g052275 41.379 87 41 2 45 131 331 407 7.85e-11 58.9
MS.gene62225.t1 MTR_6g015805 37.374 99 52 2 37 135 515 603 8.22e-11 58.9
MS.gene62225.t1 MTR_7g062920 40.449 89 43 2 43 131 327 405 8.50e-11 58.5
MS.gene62225.t1 MTR_2g075010 38.462 91 45 2 45 135 642 721 8.62e-11 58.5
MS.gene62225.t1 MTR_0015s0090 38.043 92 47 2 43 134 316 397 8.66e-11 58.5
MS.gene62225.t1 MTR_7g062890 41.379 87 41 2 45 131 327 403 9.00e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62225.t1 AT5G02290 66.087 115 32 2 27 135 32 145 2.49e-43 146
MS.gene62225.t1 AT5G02290 66.087 115 32 2 27 135 32 145 2.49e-43 146
MS.gene62225.t1 AT2G39660 63.636 110 39 1 26 135 36 144 7.12e-43 145
MS.gene62225.t1 AT2G28930 66.346 104 34 1 32 135 44 146 6.22e-42 143
MS.gene62225.t1 AT2G28930 66.346 104 34 1 32 135 47 149 7.07e-42 143
MS.gene62225.t1 AT2G28930 66.346 104 34 1 32 135 55 157 1.02e-41 143
MS.gene62225.t1 AT1G07570 53.435 131 56 2 5 135 20 145 2.47e-41 142
MS.gene62225.t1 AT1G07570 53.435 131 56 2 5 135 20 145 2.47e-41 142
MS.gene62225.t1 AT1G07570 53.435 131 56 2 5 135 20 145 2.47e-41 142
MS.gene62225.t1 AT1G07570 53.435 131 56 2 5 135 31 156 4.67e-41 141
MS.gene62225.t1 AT2G02800 61.682 107 40 1 29 135 55 160 4.62e-40 139
MS.gene62225.t1 AT2G02800 61.682 107 40 1 29 135 55 160 4.62e-40 139
MS.gene62225.t1 AT3G55450 60.550 109 42 1 27 135 31 138 1.50e-38 134
MS.gene62225.t1 AT3G55450 60.550 109 42 1 27 135 68 175 2.29e-38 134
MS.gene62225.t1 AT1G26970 59.813 107 42 1 29 135 55 160 1.12e-37 132
MS.gene62225.t1 AT1G69790 58.879 107 43 1 29 135 45 150 2.40e-37 130
MS.gene62225.t1 AT1G69790 58.879 107 43 1 29 135 56 161 3.48e-37 130
MS.gene62225.t1 AT3G28690 56.881 109 46 1 27 135 45 152 2.19e-35 126
MS.gene62225.t1 AT3G28690 56.881 109 46 1 27 135 96 203 4.15e-35 126
MS.gene62225.t1 AT1G14370 57.009 107 45 1 29 135 58 163 8.98e-35 124
MS.gene62225.t1 AT3G28690 57.843 102 42 1 34 135 3 103 2.00e-34 123
MS.gene62225.t1 AT5G15080 55.963 109 47 1 27 135 112 219 1.31e-33 122
MS.gene62225.t1 AT3G01300 59.375 96 38 1 40 135 119 213 2.09e-32 119
MS.gene62225.t1 AT4G35600 45.082 122 61 2 13 134 48 163 1.07e-31 116
MS.gene62225.t1 AT4G35600 45.082 122 61 2 13 134 47 162 1.15e-31 116
MS.gene62225.t1 AT1G76360 55.789 95 41 1 41 135 147 240 4.64e-30 112
MS.gene62225.t1 AT2G17220 47.458 118 57 3 18 135 49 161 1.09e-26 103
MS.gene62225.t1 AT2G17220 47.458 118 57 3 18 135 50 162 1.11e-26 103
MS.gene62225.t1 AT2G07180 50.485 103 43 3 37 135 66 164 8.41e-24 95.5
MS.gene62225.t1 AT2G07180 50.485 103 43 3 37 135 66 164 8.41e-24 95.5
MS.gene62225.t1 AT1G74490 43.382 136 61 4 9 135 34 162 1.14e-22 92.0
MS.gene62225.t1 AT5G01020 50.549 91 41 2 45 135 57 143 1.47e-22 91.7
MS.gene62225.t1 AT2G28940 41.509 106 51 3 34 135 79 177 1.69e-18 80.5
MS.gene62225.t1 AT1G61590 40.650 123 64 4 17 135 56 173 4.48e-18 79.3
MS.gene62225.t1 AT2G05940 39.394 132 70 4 9 135 35 161 2.26e-17 77.4
MS.gene62225.t1 AT5G16500 38.931 131 66 4 6 135 25 142 3.53e-17 77.0
MS.gene62225.t1 AT3G09010 39.806 103 51 2 33 135 22 113 8.60e-17 75.1
MS.gene62225.t1 AT3G02810 47.368 95 40 2 41 135 48 132 9.29e-17 75.9
MS.gene62225.t1 AT3G09010 39.806 103 51 2 33 135 22 113 1.41e-16 75.1
MS.gene62225.t1 AT4G17660 39.806 103 60 2 32 134 66 166 1.79e-16 74.7
MS.gene62225.t1 AT1G72540 42.105 95 51 2 41 135 68 158 1.86e-16 74.7
MS.gene62225.t1 AT5G13160 46.154 91 39 2 45 135 74 154 1.91e-16 74.7
MS.gene62225.t1 AT5G03320 43.878 98 50 2 38 135 62 154 2.26e-16 74.7
MS.gene62225.t1 AT5G03320 43.878 98 50 2 38 135 62 154 2.26e-16 74.7
MS.gene62225.t1 AT5G47070 36.585 123 74 2 12 134 41 159 1.19e-15 72.4
MS.gene62225.t1 AT5G35580 38.760 129 69 4 10 133 25 148 1.30e-15 72.4
MS.gene62225.t1 AT5G35580 38.760 129 69 4 10 133 37 160 1.37e-15 72.4
MS.gene62225.t1 AT5G56460 43.878 98 52 3 39 135 58 153 1.52e-15 72.0
MS.gene62225.t1 AT5G11410 40.171 117 63 4 21 135 16 127 2.49e-15 71.2
MS.gene62225.t1 AT3G09830 36.641 131 71 3 5 135 39 157 2.95e-15 71.2
MS.gene62225.t1 AT3G09830 36.641 131 71 3 5 135 39 157 2.95e-15 71.2
MS.gene62225.t1 AT3G09830 36.641 131 71 3 5 135 39 157 2.95e-15 71.2
MS.gene62225.t1 AT5G18610 41.935 93 44 2 43 135 69 151 3.49e-15 71.2
MS.gene62225.t1 AT5G18610 41.935 93 44 2 43 135 69 151 3.49e-15 71.2
MS.gene62225.t1 AT5G18610 41.935 93 44 2 43 135 69 151 3.49e-15 71.2
MS.gene62225.t1 AT2G26290 42.857 98 50 3 39 135 70 162 4.75e-15 70.9
MS.gene62225.t1 AT3G59750 44.828 87 38 2 45 131 291 367 5.63e-15 70.9
MS.gene62225.t1 AT4G13190 44.086 93 42 2 43 135 57 139 5.95e-15 69.7
MS.gene62225.t1 AT4G13190 44.086 93 42 2 43 135 57 139 7.40e-15 70.1
MS.gene62225.t1 AT3G59730 40.594 101 46 3 35 131 309 399 9.13e-15 70.1
MS.gene62225.t1 AT1G20650 41.935 93 43 2 43 135 64 145 1.39e-14 69.3
MS.gene62225.t1 AT2G39110 39.796 98 54 1 38 135 71 163 2.01e-14 68.9
MS.gene62225.t1 AT5G11400 39.080 87 50 2 50 135 37 121 2.03e-14 67.4
MS.gene62225.t1 AT1G16670 35.714 112 59 3 26 135 8 108 2.26e-14 68.9
MS.gene62225.t1 AT2G39110 39.796 98 54 1 38 135 56 148 2.33e-14 68.9
MS.gene62225.t1 AT1G76370 39.326 89 43 2 43 131 61 138 5.16e-14 67.8
MS.gene62225.t1 AT3G59740 42.529 87 40 2 45 131 321 397 5.40e-14 67.8
MS.gene62225.t1 AT3G59700 43.678 87 39 2 45 131 326 402 5.51e-14 67.8
MS.gene62225.t1 AT5G11400 39.080 87 50 2 50 135 37 121 7.28e-14 67.0
MS.gene62225.t1 AT3G20530 42.857 91 42 3 45 135 70 150 1.08e-13 66.6
MS.gene62225.t1 AT3G20530 42.857 91 42 3 45 135 70 150 1.26e-13 66.6
MS.gene62225.t1 AT3G59730 40.000 100 46 3 35 130 309 398 1.59e-13 66.6
MS.gene62225.t1 AT5G02800 39.785 93 46 2 43 135 59 141 2.20e-13 65.9
MS.gene62225.t1 AT2G43700 39.604 101 45 3 35 131 286 374 3.01e-13 65.9
MS.gene62225.t1 AT2G43700 39.604 101 45 3 35 131 286 374 3.01e-13 65.9
MS.gene62225.t1 AT2G43700 39.604 101 45 3 35 131 286 374 3.01e-13 65.9
MS.gene62225.t1 AT2G43700 39.604 101 45 3 35 131 286 374 3.01e-13 65.9
MS.gene62225.t1 AT2G43700 39.604 101 45 3 35 131 310 398 3.14e-13 65.9
MS.gene62225.t1 AT1G29720 39.130 92 45 2 44 135 660 740 3.26e-13 65.9
MS.gene62225.t1 AT3G51550 41.667 108 53 3 27 134 506 603 3.76e-13 65.5
MS.gene62225.t1 AT3G07070 38.384 99 49 3 39 135 59 147 4.25e-13 65.1
MS.gene62225.t1 AT1G70110 41.379 87 41 2 45 131 332 408 5.41e-13 65.1
MS.gene62225.t1 AT5G25440 35.398 113 64 3 25 135 5 110 6.10e-13 64.3
MS.gene62225.t1 AT3G24790 38.793 116 53 5 28 135 28 133 7.65e-13 64.3
MS.gene62225.t1 AT3G24790 38.462 117 54 5 27 135 9 115 7.68e-13 64.3
MS.gene62225.t1 AT1G70130 40.230 87 42 2 45 131 322 398 1.45e-12 63.9
MS.gene62225.t1 AT2G43690 43.678 87 37 2 45 131 325 399 1.69e-12 63.5
MS.gene62225.t1 AT2G43690 43.678 87 37 2 45 131 325 399 1.69e-12 63.5
MS.gene62225.t1 AT2G43690 43.678 87 37 2 45 131 289 363 1.94e-12 63.5
MS.gene62225.t1 AT5G56890 40.217 92 44 2 43 134 709 789 2.25e-12 63.2
MS.gene62225.t1 AT1G29750 40.449 89 42 2 45 133 654 731 4.47e-12 62.4
MS.gene62225.t1 AT1G29750 40.449 89 42 2 45 133 669 746 4.84e-12 62.4
MS.gene62225.t1 AT1G29750 40.449 89 42 2 45 133 669 746 5.04e-12 62.4
MS.gene62225.t1 AT4G39110 41.304 92 43 2 43 134 512 592 6.26e-12 62.0
MS.gene62225.t1 AT3G14840 37.234 94 48 2 42 135 657 739 6.53e-12 62.0
MS.gene62225.t1 AT1G61860 37.719 114 56 4 26 135 51 153 6.91e-12 61.6
MS.gene62225.t1 AT1G53430 37.079 89 45 2 45 133 616 693 6.97e-12 62.0
MS.gene62225.t1 AT1G53430 37.079 89 45 2 45 133 657 734 6.99e-12 62.0
MS.gene62225.t1 AT1G53440 37.079 89 45 2 45 133 655 732 7.41e-12 62.0
MS.gene62225.t1 AT1G06840 38.144 97 49 2 37 133 605 690 1.74e-11 60.8
MS.gene62225.t1 AT3G26940 34.862 109 58 3 29 135 44 141 2.12e-11 60.5
MS.gene62225.t1 AT1G56145 34.579 107 57 3 31 135 556 651 2.68e-11 60.1
MS.gene62225.t1 AT1G56145 34.579 107 57 3 31 135 659 754 2.70e-11 60.1
MS.gene62225.t1 AT1G29730 37.363 91 46 2 45 135 628 707 2.78e-11 60.1
MS.gene62225.t1 AT1G56145 34.579 107 57 3 31 135 659 754 2.79e-11 60.1
MS.gene62225.t1 AT1G29730 37.363 91 46 2 45 135 628 707 2.94e-11 60.1
MS.gene62225.t1 AT1G29730 37.363 91 46 2 45 135 661 740 3.08e-11 60.1
MS.gene62225.t1 AT1G29730 37.363 91 46 2 45 135 661 740 3.09e-11 60.1
MS.gene62225.t1 AT3G53380 35.238 105 56 3 29 133 350 442 3.70e-11 59.7
MS.gene62225.t1 AT4G29050 36.782 87 45 2 45 131 346 422 4.01e-11 59.7
MS.gene62225.t1 AT3G55550 37.363 91 47 2 45 135 334 414 4.01e-11 59.7
MS.gene62225.t1 AT4G29050 36.782 87 45 2 45 131 332 408 4.04e-11 59.7
MS.gene62225.t1 AT2G20300 36.559 93 48 2 41 133 333 414 4.77e-11 59.3
MS.gene62225.t1 AT2G37710 40.230 87 42 2 45 131 335 411 5.51e-11 59.3
MS.gene62225.t1 AT5G54380 39.823 113 55 4 23 133 474 575 6.17e-11 59.3
MS.gene62225.t1 AT2G21480 39.130 92 45 2 43 134 511 591 8.42e-11 58.9
MS.gene62225.t1 AT1G56130 38.462 91 45 2 45 135 534 613 8.76e-11 58.9
MS.gene62225.t1 AT1G56130 38.462 91 45 2 45 135 682 761 9.32e-11 58.5
MS.gene62225.t1 AT1G56130 38.462 91 45 2 45 135 483 562 9.32e-11 58.5

Find 30 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTGTTCCAACATCTT+TGG 0.173785 3.2:-62266943 None:intergenic
TGTGTTTGGTAGGGTATTTA+AGG 0.299093 3.2:+62267124 MS.gene62225:CDS
TCTGAAACACTTCAAATTGT+TGG 0.312732 3.2:-62267039 None:intergenic
GTGTTTGGTAGGGTATTTAA+GGG 0.396054 3.2:+62267125 MS.gene62225:CDS
CCTAACCTTGTGAAACTGAT+TGG 0.414936 3.2:+62267396 MS.gene62225:CDS
CCAATCAGTTTCACAAGGTT+AGG 0.417619 3.2:-62267396 None:intergenic
AGGCAGAAATCAATTACCTT+GGG 0.441935 3.2:+62267361 MS.gene62225:intron
TGGATGAACGTGTGTTTGGT+AGG 0.470876 3.2:+62267114 MS.gene62225:CDS
CCAACCATTCACTATCTCCT+TGG 0.481488 3.2:-62267232 None:intergenic
GTTGTGGATGAACGTGTGTT+TGG 0.495257 3.2:+62267110 MS.gene62225:CDS
AAACCAGTACCTGGTTTAGT+AGG 0.499048 3.2:-62267173 None:intergenic
TAGGCAGAAATCAATTACCT+TGG 0.523443 3.2:+62267360 MS.gene62225:intron
TTGGTAGGGTATTTAAGGGG+TGG 0.525663 3.2:+62267129 MS.gene62225:CDS
TCATCCACAACTTGACCACT+TGG 0.538417 3.2:-62267098 None:intergenic
TCATCCAAGTGGTCAAGTTG+TGG 0.542857 3.2:+62267094 MS.gene62225:CDS
CCAAGGAGATAGTGAATGGT+TGG 0.552988 3.2:+62267232 MS.gene62225:CDS
GCAACCAAGGAGATAGTGAA+TGG 0.556562 3.2:+62267228 MS.gene62225:CDS
AGGTTTGAATCCAAAGATGT+TGG 0.558594 3.2:+62266933 MS.gene62225:intron
GGATGAACGTGTGTTTGGTA+GGG 0.569711 3.2:+62267115 MS.gene62225:CDS
CAAAGATGTTGGAACAGAAG+AGG 0.577329 3.2:+62266944 MS.gene62225:CDS
GCTCCTACTAAACCAGGTAC+TGG 0.582761 3.2:+62267170 MS.gene62225:CDS
TAGGATGACGCAACTCCCCA+AGG 0.609072 3.2:-62267377 None:intergenic
TTCGTCAACTTCAAGTACTG+AGG 0.615008 3.2:+62267001 MS.gene62225:CDS
ACGCTAGCTCCTACTAAACC+AGG 0.629859 3.2:+62267164 MS.gene62225:CDS
GCAACAACAAAACCAGTACC+TGG 0.631075 3.2:-62267182 None:intergenic
TTTAACAAAGAAAGCAACCA+AGG 0.635356 3.2:+62267215 MS.gene62225:CDS
GGCAGAAATCAATTACCTTG+GGG 0.643111 3.2:+62267362 MS.gene62225:intron
TCGTCAACTTCAAGTACTGA+GGG 0.655265 3.2:+62267002 MS.gene62225:CDS
AGTAACCAATCAGTTTCACA+AGG 0.669444 3.2:-62267401 None:intergenic
TGTTTGGTAGGGTATTTAAG+GGG 0.669585 3.2:+62267126 MS.gene62225:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTATTTTCAAGTT+AGG + chr3.2:62267264-62267283 MS.gene62225:intron 10.0%
!!! TAGTTTATGAAACTTGTTTT+TGG + chr3.2:62267299-62267318 MS.gene62225:intron 20.0%
!! AAAAGAAGGTACAATAACAT+TGG - chr3.2:62266838-62266857 None:intergenic 25.0%
!!! TTCATGTTTCTATTTTGACA+TGG + chr3.2:62266908-62266927 MS.gene62225:intron 25.0%
ACTAATTGACCTTGTACTAT+AGG + chr3.2:62267341-62267360 MS.gene62225:intron 30.0%
TCTACCAATAGAAGAAAAGA+AGG - chr3.2:62266852-62266871 None:intergenic 30.0%
TTTAACAAAGAAAGCAACCA+AGG + chr3.2:62267215-62267234 MS.gene62225:CDS 30.0%
! ACAAGAAATTTTCATCCAAG+TGG + chr3.2:62267083-62267102 MS.gene62225:CDS 30.0%
! TCTGAAACACTTCAAATTGT+TGG - chr3.2:62267042-62267061 None:intergenic 30.0%
! TGTACCTTCTTTTCTTCTAT+TGG + chr3.2:62266845-62266864 MS.gene62225:intron 30.0%
! TTTTAGTGGTTTAAGCATCA+AGG + chr3.2:62266971-62266990 MS.gene62225:CDS 30.0%
AGGCAGAAATCAATTACCTT+GGG + chr3.2:62267361-62267380 MS.gene62225:intron 35.0%
AGGTTTGAATCCAAAGATGT+TGG + chr3.2:62266933-62266952 MS.gene62225:intron 35.0%
AGTAACCAATCAGTTTCACA+AGG - chr3.2:62267404-62267423 None:intergenic 35.0%
TAGGCAGAAATCAATTACCT+TGG + chr3.2:62267360-62267379 MS.gene62225:intron 35.0%
TGATTTCTGCCTATAGTACA+AGG - chr3.2:62267353-62267372 None:intergenic 35.0%
! GTGTTTGGTAGGGTATTTAA+GGG + chr3.2:62267125-62267144 MS.gene62225:CDS 35.0%
! TGTGTTTGGTAGGGTATTTA+AGG + chr3.2:62267124-62267143 MS.gene62225:CDS 35.0%
! TGTTTGGTAGGGTATTTAAG+GGG + chr3.2:62267126-62267145 MS.gene62225:CDS 35.0%
!!! ACAGAAGAGGATGTTTTTAG+TGG + chr3.2:62266957-62266976 MS.gene62225:CDS 35.0%
!!! GTTTCTATTTTGACATGGAC+AGG + chr3.2:62266913-62266932 MS.gene62225:intron 35.0%
AAACCAGTACCTGGTTTAGT+AGG - chr3.2:62267176-62267195 None:intergenic 40.0%
CAAAGATGTTGGAACAGAAG+AGG + chr3.2:62266944-62266963 MS.gene62225:CDS 40.0%
CCAATCAGTTTCACAAGGTT+AGG - chr3.2:62267399-62267418 None:intergenic 40.0%
CCTAACCTTGTGAAACTGAT+TGG + chr3.2:62267396-62267415 MS.gene62225:CDS 40.0%
CTCTTCTGTTCCAACATCTT+TGG - chr3.2:62266946-62266965 None:intergenic 40.0%
GGCAGAAATCAATTACCTTG+GGG + chr3.2:62267362-62267381 MS.gene62225:intron 40.0%
! TTCGTCAACTTCAAGTACTG+AGG + chr3.2:62267001-62267020 MS.gene62225:CDS 40.0%
!! TCGTCAACTTCAAGTACTGA+GGG + chr3.2:62267002-62267021 MS.gene62225:CDS 40.0%
CCAACCATTCACTATCTCCT+TGG - chr3.2:62267235-62267254 None:intergenic 45.0%
CCAAGGAGATAGTGAATGGT+TGG + chr3.2:62267232-62267251 MS.gene62225:CDS 45.0%
GCAACAACAAAACCAGTACC+TGG - chr3.2:62267185-62267204 None:intergenic 45.0%
GCAACCAAGGAGATAGTGAA+TGG + chr3.2:62267228-62267247 MS.gene62225:CDS 45.0%
GGATGAACGTGTGTTTGGTA+GGG + chr3.2:62267115-62267134 MS.gene62225:CDS 45.0%
GTTGTGGATGAACGTGTGTT+TGG + chr3.2:62267110-62267129 MS.gene62225:CDS 45.0%
TCATCCACAACTTGACCACT+TGG - chr3.2:62267101-62267120 None:intergenic 45.0%
TGGATGAACGTGTGTTTGGT+AGG + chr3.2:62267114-62267133 MS.gene62225:CDS 45.0%
! TCATCCAAGTGGTCAAGTTG+TGG + chr3.2:62267094-62267113 MS.gene62225:CDS 45.0%
! TTGGTAGGGTATTTAAGGGG+TGG + chr3.2:62267129-62267148 MS.gene62225:CDS 45.0%
ACGCTAGCTCCTACTAAACC+AGG + chr3.2:62267164-62267183 MS.gene62225:CDS 50.0%
GCTCCTACTAAACCAGGTAC+TGG + chr3.2:62267170-62267189 MS.gene62225:CDS 50.0%
TAGGATGACGCAACTCCCCA+AGG - chr3.2:62267380-62267399 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 62266803 62267440 62266803 ID=MS.gene62225
chr3.2 mRNA 62266803 62267440 62266803 ID=MS.gene62225.t1;Parent=MS.gene62225
chr3.2 exon 62266803 62266813 62266803 ID=MS.gene62225.t1.exon1;Parent=MS.gene62225.t1
chr3.2 CDS 62266803 62266813 62266803 ID=cds.MS.gene62225.t1;Parent=MS.gene62225.t1
chr3.2 exon 62266935 62267253 62266935 ID=MS.gene62225.t1.exon2;Parent=MS.gene62225.t1
chr3.2 CDS 62266935 62267253 62266935 ID=cds.MS.gene62225.t1;Parent=MS.gene62225.t1
chr3.2 exon 62267363 62267440 62267363 ID=MS.gene62225.t1.exon3;Parent=MS.gene62225.t1
chr3.2 CDS 62267363 62267440 62267363 ID=cds.MS.gene62225.t1;Parent=MS.gene62225.t1
Gene Sequence

>MS.gene62225

ATGAATAATATGTAATGAGTTAACTTTGAGATCCAATGTTATTGTACCTTCTTTTCTTCTATTGGTAGAAAAATGTTTGCAAGCAGAATATTTTATAAAAGTTAGTTCATGTTTCTATTTTGACATGGACAGGTTTGAATCCAAAGATGTTGGAACAGAAGAGGATGTTTTTAGTGGTTTAAGCATCAAGGTATTATGTTCGTCAACTTCAAGTACTGAGGGTGAGATATTACAATCCAACAATTTGAAGTGTTTCAGATTCAATGAGCTAAAAACTGCTACAAGAAATTTTCATCCAAGTGGTCAAGTTGTGGATGAACGTGTGTTTGGTAGGGTATTTAAGGGGTGGATCGATGAGCACACGCTAGCTCCTACTAAACCAGGTACTGGTTTTGTTGTTGCTGTGATGATGTTTAACAAAGAAAGCAACCAAGGAGATAGTGAATGGTTGGTGAGTGTCGTTTAATTTTATTTTCAAGTTAGGATTATATCAAATTAGTTTATGAAACTTGTTTTTGGTAGTAAAATTGATGATGAGACTAATTGACCTTGTACTATAGGCAGAAATCAATTACCTTGGGGAGTTGCGTCATCCTAACCTTGTGAAACTGATTGGTTACTGTTTAGAGAATGACTGA
Protein sequence

>MS.gene62225.t1

MNNMFESKDVGTEEDVFSGLSIKVLCSSTSSTEGEILQSNNLKCFRFNELKTATRNFHPSGQVVDERVFGRVFKGWIDEHTLAPTKPGTGFVVAVMMFNKESNQGDSEWLAEINYLGELRHPNLVKLIGYCLEND