AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62277

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62277.t1 MTR_4g102720 50.877 171 51 1 1 171 1 138 4.12e-54 181
MS.gene62277.t1 MTR_0402s0040 29.018 448 220 10 7 450 26 379 2.08e-46 168
MS.gene62277.t1 MTR_7g074790 45.402 174 76 2 2 174 5 160 4.74e-42 149
MS.gene62277.t1 MTR_5g039760 40.341 176 79 3 2 175 5 156 1.21e-36 133
MS.gene62277.t1 MTR_7g061980 52.212 113 53 1 4 115 7 119 7.26e-34 124
MS.gene62277.t1 MTR_5g015480 45.161 124 65 2 7 127 56 179 7.22e-21 92.4
MS.gene62277.t1 MTR_2g070590 39.048 105 61 2 7 108 17 121 2.32e-17 78.6
MS.gene62277.t1 MTR_0558s0020 31.633 196 106 7 3 175 35 225 2.46e-17 82.8
MS.gene62277.t1 MTR_1g083640 32.143 196 105 7 3 175 50 240 4.34e-17 82.0
MS.gene62277.t1 MTR_2g099430 44.828 87 47 1 30 115 26 112 1.12e-16 76.3
MS.gene62277.t1 MTR_2g014100 31.282 195 108 6 3 175 43 233 2.09e-16 79.3
MS.gene62277.t1 MTR_6g017200 44.304 79 43 1 7 84 58 136 4.08e-16 75.9
MS.gene62277.t1 MTR_1g057920 44.304 79 43 1 7 84 34 112 1.03e-14 70.9
MS.gene62277.t1 MTR_6g090505 24.342 304 165 8 36 276 5 306 1.37e-14 75.5
MS.gene62277.t1 MTR_1g008290 36.283 113 69 2 64 176 9 118 1.24e-13 68.6
MS.gene62277.t1 MTR_7g113010 38.095 126 63 2 7 130 457 569 1.46e-13 73.2
MS.gene62277.t1 MTR_1g070355 28.500 200 123 5 13 206 80 265 2.34e-13 72.4
MS.gene62277.t1 MTR_0337s0060 31.618 136 88 3 227 360 20 152 2.65e-13 69.7
MS.gene62277.t1 MTR_6g051425 28.571 182 117 5 6 176 13 192 3.61e-13 70.9
MS.gene62277.t1 MTR_4g069880 46.875 64 34 0 2 65 5 68 8.84e-13 63.5
MS.gene62277.t1 MTR_4g067290 36.220 127 72 4 6 130 55 174 2.91e-12 66.6
MS.gene62277.t1 MTR_4g067290 37.500 104 62 3 6 107 55 157 3.68e-12 66.2
MS.gene62277.t1 MTR_4g067290 36.220 127 72 4 6 130 75 194 4.89e-12 66.6
MS.gene62277.t1 MTR_4g067290 36.220 127 72 4 6 130 115 234 6.80e-12 66.6
MS.gene62277.t1 MTR_4g067290 37.500 104 62 3 6 107 75 177 8.20e-12 65.9
MS.gene62277.t1 MTR_4g067290 37.500 104 62 3 6 107 73 175 8.22e-12 65.9
MS.gene62277.t1 MTR_2g098920 36.893 103 62 3 6 106 79 180 9.22e-12 65.9
MS.gene62277.t1 MTR_1g013060 29.480 173 113 3 2 166 19 190 5.37e-11 62.8
MS.gene62277.t1 MTR_4g040430 29.586 169 95 6 3 152 34 197 5.81e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62277.t1 AT3G22170 30.201 298 183 6 155 444 382 662 3.50e-33 133
MS.gene62277.t1 AT3G22170 30.201 298 183 6 155 444 382 662 3.50e-33 133
MS.gene62277.t1 AT4G15090 28.788 264 182 2 176 439 390 647 1.25e-30 125
MS.gene62277.t1 AT4G15090 25.758 198 131 5 4 198 48 232 1.81e-13 73.2
MS.gene62277.t1 AT4G15090 28.788 264 182 2 176 439 390 647 1.25e-30 125
MS.gene62277.t1 AT4G15090 25.758 198 131 5 4 198 48 232 1.81e-13 73.2
MS.gene62277.t1 AT4G15090 28.788 264 182 2 176 439 390 647 1.25e-30 125
MS.gene62277.t1 AT4G15090 25.758 198 131 5 4 198 48 232 1.81e-13 73.2
MS.gene62277.t1 AT4G15090 28.788 264 182 2 176 439 390 647 1.25e-30 125
MS.gene62277.t1 AT4G15090 25.758 198 131 5 4 198 48 232 1.81e-13 73.2
MS.gene62277.t1 AT4G15090 28.788 264 182 2 176 439 390 647 1.25e-30 125
MS.gene62277.t1 AT4G15090 25.758 198 131 5 4 198 48 232 1.81e-13 73.2
MS.gene62277.t1 AT4G38170 28.374 289 190 6 175 457 178 455 1.96e-30 124
MS.gene62277.t1 AT4G38180 34.071 226 141 3 176 397 414 635 8.91e-30 123
MS.gene62277.t1 AT4G38180 34.722 216 122 5 4 213 70 272 2.15e-25 110
MS.gene62277.t1 AT1G76320 27.931 290 193 5 155 442 310 585 1.86e-26 113
MS.gene62277.t1 AT1G76320 27.528 178 112 7 11 185 1 164 6.24e-11 65.1
MS.gene62277.t1 AT1G76320 27.931 290 193 5 155 442 310 585 1.86e-26 113
MS.gene62277.t1 AT1G76320 27.528 178 112 7 11 185 1 164 6.24e-11 65.1
MS.gene62277.t1 AT1G76320 27.931 290 193 5 155 442 310 585 2.04e-26 113
MS.gene62277.t1 AT1G76320 27.528 178 112 7 11 185 1 164 6.39e-11 65.1
MS.gene62277.t1 AT1G76320 27.931 290 193 5 155 442 310 585 2.17e-26 113
MS.gene62277.t1 AT1G76320 27.528 178 112 7 11 185 1 164 5.04e-11 65.5
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 339 588 2.27e-26 113
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 339 588 2.27e-26 113
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 282 531 2.66e-26 112
MS.gene62277.t1 AT1G80010 27.526 287 193 8 176 451 435 717 2.91e-26 112
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 339 588 2.96e-26 112
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 339 588 2.96e-26 112
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 339 588 3.21e-26 112
MS.gene62277.t1 AT4G19990 31.274 259 163 4 177 429 353 602 3.52e-26 112
MS.gene62277.t1 AT2G27110 28.195 266 184 4 176 440 361 620 4.07e-26 112
MS.gene62277.t1 AT2G27110 28.195 266 184 4 176 440 361 620 4.07e-26 112
MS.gene62277.t1 AT2G27110 28.195 266 184 4 176 440 216 475 4.73e-26 112
MS.gene62277.t1 AT5G18960 28.975 283 185 7 176 451 511 784 1.03e-24 108
MS.gene62277.t1 AT5G18960 28.975 283 185 7 176 451 511 784 1.03e-24 108
MS.gene62277.t1 AT3G06250 29.329 283 184 7 176 451 487 760 4.14e-24 106
MS.gene62277.t1 AT3G06250 29.329 283 184 7 176 451 487 760 4.14e-24 106
MS.gene62277.t1 AT3G06250 29.329 283 184 7 176 451 487 760 4.14e-24 106
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 3.25e-23 103
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 3.25e-23 103
MS.gene62277.t1 AT2G32250 25.000 264 192 2 177 440 294 551 3.36e-23 103
MS.gene62277.t1 AT2G32250 25.000 264 192 2 177 440 294 551 3.51e-23 103
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 3.66e-23 103
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 3.66e-23 103
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 3.66e-23 103
MS.gene62277.t1 AT2G32250 24.906 265 193 2 176 440 334 592 4.28e-23 103
MS.gene62277.t1 AT1G52520 24.460 278 196 3 186 451 420 695 7.78e-21 96.3
MS.gene62277.t1 AT1G10240 26.244 221 156 3 178 397 394 608 3.29e-17 84.7
MS.gene62277.t1 AT1G10240 26.244 221 156 3 178 397 394 608 3.29e-17 84.7
MS.gene62277.t1 AT5G28530 23.529 238 172 5 175 411 345 573 3.51e-13 72.0
MS.gene62277.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.32e-13 70.9
MS.gene62277.t1 AT5G28530 23.529 238 172 5 175 411 408 636 4.24e-13 72.0
MS.gene62277.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.73e-13 70.9
MS.gene62277.t1 AT5G28530 29.825 171 112 5 5 168 53 222 8.89e-13 70.9
MS.gene62277.t1 AT5G28530 23.950 238 167 6 175 411 345 569 1.72e-12 70.1
MS.gene62277.t1 AT5G28530 29.825 171 112 5 5 168 53 222 1.01e-12 70.9
MS.gene62277.t1 AT5G28530 23.950 238 167 6 175 411 408 632 2.06e-12 69.7
MS.gene62277.t1 AT5G28530 29.825 171 112 5 5 168 53 222 1.01e-12 70.9
MS.gene62277.t1 AT5G28530 23.950 238 167 6 175 411 408 632 2.06e-12 69.7
MS.gene62277.t1 AT3G59470 40.777 103 58 3 6 106 69 170 2.10e-11 64.7
MS.gene62277.t1 AT3G59470 40.777 103 58 3 6 106 69 170 2.10e-11 64.7
MS.gene62277.t1 AT3G59470 40.777 103 58 3 6 106 81 182 3.19e-11 64.3

Find 72 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCTCTTTAAAATATA+AGG 0.176322 3.2:-61503161 None:intergenic
TCTGAACACCATACTTTATA+AGG 0.212221 3.2:-61502590 None:intergenic
TTGAAGATGCTTGGGAGTTC+TGG 0.234863 3.2:+61501551 MS.gene62277:CDS
GACAACATATGAGTTGTTTC+TGG 0.253501 3.2:-61501829 None:intergenic
AAATTTGTCCCCGCTTTATT+AGG 0.254015 3.2:+61503273 MS.gene62277:CDS
CCGAAAACCATATCTACTTT+TGG 0.265147 3.2:-61501523 None:intergenic
TTAAGAAACTCAACAGCTTC+TGG 0.265886 3.2:-61503320 None:intergenic
TATTGCCAAGAAAAGGAATA+TGG 0.289005 3.2:+61503004 MS.gene62277:CDS
TACGGTGGTAAGGTTGGATT+TGG 0.293440 3.2:+61501580 MS.gene62277:CDS
ATCTCCAGCACAATGTTATA+AGG 0.298579 3.2:+61503250 MS.gene62277:CDS
CCTTGCTTCACAATTTGTTC+TGG 0.300300 3.2:-61501731 None:intergenic
CTTAAAAGTCTTCATTCATA+TGG 0.313141 3.2:+61503118 MS.gene62277:CDS
ATGGTTCAGTTTCTTCTTGT+AGG 0.346032 3.2:+61501635 MS.gene62277:CDS
TGTACAGTATAAAGGAGAAA+TGG 0.347671 3.2:+61502634 MS.gene62277:CDS
TGTCGTAAATTTGAGAGCTT+TGG 0.348811 3.2:+61503077 MS.gene62277:CDS
ACGAAGAAGACTTTGACATT+AGG 0.353035 3.2:+61502669 MS.gene62277:CDS
ACATCCCTCCTTATAAAGTA+TGG 0.358569 3.2:+61502582 MS.gene62277:CDS
TAAGGAAGTTGCTGATGAAT+TGG 0.363801 3.2:+61503340 MS.gene62277:CDS
CGAAGAAGACTTTGACATTA+GGG 0.376552 3.2:+61502670 MS.gene62277:CDS
ACGGTGGTAAGGTTGGATTT+GGG 0.383690 3.2:+61501581 MS.gene62277:CDS
ATGGCAAGTGACCTTCGATT+TGG 0.384310 3.2:+61503031 MS.gene62277:CDS
TTTGTTCTGGTCTCTAGTCT+TGG 0.387348 3.2:-61501718 None:intergenic
TTGGAAGCCAAAAGTAGATA+TGG 0.391013 3.2:+61501516 MS.gene62277:CDS
GCAAAGAATGTACAGTATAA+AGG 0.392434 3.2:+61502626 MS.gene62277:CDS
TCGGTAGCTTTGAAGATGCT+TGG 0.398691 3.2:+61501542 MS.gene62277:CDS
CGGTAGCTTTGAAGATGCTT+GGG 0.400248 3.2:+61501543 MS.gene62277:CDS
GATACAAGATGAATGAAGAT+TGG 0.401677 3.2:+61501497 None:intergenic
AGCAGGAGGCAGAACTAACT+TGG 0.405107 3.2:+61501951 MS.gene62277:CDS
AGAAGCTGTTGAGTTTCTTA+AGG 0.410867 3.2:+61503322 MS.gene62277:CDS
GACTTTAAGAAATGCATGTA+TGG 0.419899 3.2:+61502525 MS.gene62277:intron
GTACAGTATAAAGGAGAAAT+GGG 0.433816 3.2:+61502635 MS.gene62277:CDS
GTAAGGTTGGATTTGGGGTG+AGG 0.435582 3.2:+61501587 MS.gene62277:CDS
AAGAACAATTTGAAGATGGT+TGG 0.449713 3.2:+61502559 MS.gene62277:CDS
CTTATGTTATTGCCAAGAAA+AGG 0.457771 3.2:+61502997 MS.gene62277:CDS
AGTAGAGCTTCACAAACTAT+TGG 0.464878 3.2:+61503197 MS.gene62277:CDS
CTCTTTAAAATATAAGGCTC+TGG 0.465021 3.2:-61503155 None:intergenic
AGGTTTGTTTGCTGCAAAGA+AGG 0.468354 3.2:+61501655 MS.gene62277:CDS
ACAAATTGTGAAGCAAGGTT+AGG 0.474466 3.2:+61501736 MS.gene62277:CDS
GAATACGAGTTCTTCAGTCT+TGG 0.477905 3.2:-61502852 None:intergenic
CGGTGGTAAGGTTGGATTTG+GGG 0.479970 3.2:+61501582 MS.gene62277:CDS
ATTTCCTTATAACATTGTGC+TGG 0.482058 3.2:-61503254 None:intergenic
TGGGAGTTCTGGAAAACTTA+CGG 0.491418 3.2:+61501562 MS.gene62277:CDS
TAGTCATGTTGCAGAAGACT+TGG 0.491651 3.2:+61503223 MS.gene62277:CDS
GAATGTGGATGGAAAATTGA+TGG 0.494783 3.2:+61501765 MS.gene62277:CDS
CTGGAAAACTTACGGTGGTA+AGG 0.495710 3.2:+61501570 MS.gene62277:CDS
GATGAAGAACAATTTGAAGA+TGG 0.510431 3.2:+61502555 MS.gene62277:CDS
ATTGCCAAGAAAAGGAATAT+GGG 0.518068 3.2:+61503005 MS.gene62277:CDS
AGAAAAGGAATATGGGAGAA+TGG 0.522592 3.2:+61503012 MS.gene62277:CDS
AATAGTAGGAGTATAAAGCT+TGG 0.523378 3.2:-61502895 None:intergenic
TATGTTGTCTTCTCAACGAA+AGG 0.532534 3.2:+61501843 MS.gene62277:CDS
AAAACTTACGGTGGTAAGGT+TGG 0.535426 3.2:+61501574 MS.gene62277:CDS
CGATTTCCTTTGTTGTACAC+CGG 0.540939 3.2:-61501908 None:intergenic
TGTGACGATCCTAATAAAGC+GGG 0.542482 3.2:-61503282 None:intergenic
TTAGGACTTAAGAATGTGGA+TGG 0.548535 3.2:+61501754 MS.gene62277:CDS
GATTTACTGAGTAAAGAAGC+AGG 0.550187 3.2:+61501934 MS.gene62277:CDS
AAGATGTTGTAGAAGAAAAG+CGG 0.551004 3.2:+61502787 MS.gene62277:CDS
GAACACCATACTTTATAAGG+AGG 0.576736 3.2:-61502587 None:intergenic
TTTATTAGGATCGTCACAGA+AGG 0.594701 3.2:+61503287 MS.gene62277:CDS
GCAAATGTAACTCGTGGTTG+TGG 0.597490 3.2:-61501807 None:intergenic
AACACCATACTTTATAAGGA+GGG 0.603443 3.2:-61502586 None:intergenic
GCAGGAGGCAGAACTAACTT+GGG 0.606477 3.2:+61501952 MS.gene62277:CDS
CCAGAACAAATTGTGAAGCA+AGG 0.610911 3.2:+61501731 MS.gene62277:CDS
CTGTGACGATCCTAATAAAG+CGG 0.623114 3.2:-61503283 None:intergenic
ATTGAACTAGCTGATAGTGC+CGG 0.644559 3.2:+61501889 MS.gene62277:CDS
ATAGTGCCGGTGTACAACAA+AGG 0.660446 3.2:+61501902 MS.gene62277:CDS
TTTCTGGCAAATGTAACTCG+TGG 0.662245 3.2:-61501813 None:intergenic
CAAACAACTCATACTCACGT+TGG 0.665525 3.2:-61502929 None:intergenic
AGCATGCTTTGTGAAAAGCA+TGG 0.679180 3.2:+61502953 MS.gene62277:CDS
AAGGTTAGGACTTAAGAATG+TGG 0.679784 3.2:+61501750 MS.gene62277:CDS
GTGACGATCCTAATAAAGCG+GGG 0.705450 3.2:-61503281 None:intergenic
TTACTGAGTAAAGAAGCAGG+AGG 0.758361 3.2:+61501937 MS.gene62277:CDS
GAGTTCTGGAAAACTTACGG+TGG 0.762461 3.2:+61501565 MS.gene62277:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAAATTTTATGAGTA+AGG + chr3.2:61502731-61502750 MS.gene62277:CDS 10.0%
!! AAAAAAAAGAGAAAGAAGTT+TGG + chr3.2:61502008-61502027 MS.gene62277:CDS 20.0%
!!! TTGATTGATTACAGTTATTT+TGG + chr3.2:61502162-61502181 MS.gene62277:intron 20.0%
! ACACTTAGGAAATTTAATGA+AGG + chr3.2:61502482-61502501 MS.gene62277:intron 25.0%
! ACTTAGGAAATTTAATGAAG+GGG + chr3.2:61502484-61502503 MS.gene62277:intron 25.0%
! AGATTATACACACAGAAAAA+AGG + chr3.2:61501612-61501631 MS.gene62277:CDS 25.0%
! CAAAATGGAATTAAACACTT+AGG + chr3.2:61502468-61502487 MS.gene62277:intron 25.0%
! CACTTAGGAAATTTAATGAA+GGG + chr3.2:61502483-61502502 MS.gene62277:intron 25.0%
! CTTAAAAGTCTTCATTCATA+TGG + chr3.2:61503118-61503137 MS.gene62277:CDS 25.0%
! TGGAATAAGTCAAAAATAGT+AGG - chr3.2:61502912-61502931 None:intergenic 25.0%
!! AAATTTTATGAGTAAGGACT+TGG + chr3.2:61502737-61502756 MS.gene62277:CDS 25.0%
AACACCATACTTTATAAGGA+GGG - chr3.2:61502589-61502608 None:intergenic 30.0%
AAGAACAATTTGAAGATGGT+TGG + chr3.2:61502559-61502578 MS.gene62277:CDS 30.0%
AAGATGTTGTAGAAGAAAAG+CGG + chr3.2:61502787-61502806 MS.gene62277:CDS 30.0%
ATGGTGTTCAGAAAAATGAT+TGG + chr3.2:61502601-61502620 MS.gene62277:CDS 30.0%
ATTGCCAAGAAAAGGAATAT+GGG + chr3.2:61503005-61503024 MS.gene62277:CDS 30.0%
ATTTCCTTATAACATTGTGC+TGG - chr3.2:61503257-61503276 None:intergenic 30.0%
CTTAGGAAATTTAATGAAGG+GGG + chr3.2:61502485-61502504 MS.gene62277:intron 30.0%
CTTATGTTATTGCCAAGAAA+AGG + chr3.2:61502997-61503016 MS.gene62277:CDS 30.0%
GATGAAGAACAATTTGAAGA+TGG + chr3.2:61502555-61502574 MS.gene62277:CDS 30.0%
GCAAAGAATGTACAGTATAA+AGG + chr3.2:61502626-61502645 MS.gene62277:CDS 30.0%
GTACAGTATAAAGGAGAAAT+GGG + chr3.2:61502635-61502654 MS.gene62277:CDS 30.0%
TACTGATCAAGACAAATCAA+TGG + chr3.2:61502383-61502402 MS.gene62277:intron 30.0%
TATACACACAGAAAAAAGGA+TGG + chr3.2:61501616-61501635 MS.gene62277:CDS 30.0%
TATTGCCAAGAAAAGGAATA+TGG + chr3.2:61503004-61503023 MS.gene62277:CDS 30.0%
TCTGAACACCATACTTTATA+AGG - chr3.2:61502593-61502612 None:intergenic 30.0%
TGATCAGTAAAAACTGTATG+AGG - chr3.2:61502372-61502391 None:intergenic 30.0%
TGTACAGTATAAAGGAGAAA+TGG + chr3.2:61502634-61502653 MS.gene62277:CDS 30.0%
! AATAGTAGGAGTATAAAGCT+TGG - chr3.2:61502898-61502917 None:intergenic 30.0%
! CCAAAAGTAGATATGGTTTT+CGG + chr3.2:61501523-61501542 MS.gene62277:CDS 30.0%
! GACTTTAAGAAATGCATGTA+TGG + chr3.2:61502525-61502544 MS.gene62277:intron 30.0%
! TGTATTCTTTTCCAAATCGA+AGG - chr3.2:61503045-61503064 None:intergenic 30.0%
!! AGCCTTATATTTTAAAGAGG+TGG + chr3.2:61503159-61503178 MS.gene62277:CDS 30.0%
!! CAGAGCCTTATATTTTAAAG+AGG + chr3.2:61503156-61503175 MS.gene62277:CDS 30.0%
!! CTCTTTAAAATATAAGGCTC+TGG - chr3.2:61503158-61503177 None:intergenic 30.0%
!! GTCCACCTCTTTAAAATATA+AGG - chr3.2:61503164-61503183 None:intergenic 30.0%
!!! TCTTCAGTCTTGGAATTTTT+TGG - chr3.2:61502845-61502864 None:intergenic 30.0%
AAGGTTAGGACTTAAGAATG+TGG + chr3.2:61501750-61501769 MS.gene62277:CDS 35.0%
ACAAATTGTGAAGCAAGGTT+AGG + chr3.2:61501736-61501755 MS.gene62277:CDS 35.0%
ACATCCCTCCTTATAAAGTA+TGG + chr3.2:61502582-61502601 MS.gene62277:CDS 35.0%
ACGAAGAAGACTTTGACATT+AGG + chr3.2:61502669-61502688 MS.gene62277:CDS 35.0%
AGAAAAGGAATATGGGAGAA+TGG + chr3.2:61503012-61503031 MS.gene62277:CDS 35.0%
AGAAAGAAGTTTGGTACAAG+GGG + chr3.2:61502017-61502036 MS.gene62277:intron 35.0%
AGAAGCTGTTGAGTTTCTTA+AGG + chr3.2:61503322-61503341 MS.gene62277:CDS 35.0%
AGAGAAAGAAGTTTGGTACA+AGG + chr3.2:61502015-61502034 MS.gene62277:intron 35.0%
AGTAGAGCTTCACAAACTAT+TGG + chr3.2:61503197-61503216 MS.gene62277:CDS 35.0%
ATCTCCAGCACAATGTTATA+AGG + chr3.2:61503250-61503269 MS.gene62277:CDS 35.0%
ATGGTTCAGTTTCTTCTTGT+AGG + chr3.2:61501635-61501654 MS.gene62277:CDS 35.0%
CAATATCTAGCTGATAAGCA+TGG - chr3.2:61502101-61502120 None:intergenic 35.0%
CGAAGAAGACTTTGACATTA+GGG + chr3.2:61502670-61502689 MS.gene62277:CDS 35.0%
GAACACCATACTTTATAAGG+AGG - chr3.2:61502590-61502609 None:intergenic 35.0%
GAATGTGGATGGAAAATTGA+TGG + chr3.2:61501765-61501784 MS.gene62277:CDS 35.0%
GAGAAAGAAGTTTGGTACAA+GGG + chr3.2:61502016-61502035 MS.gene62277:intron 35.0%
GATTTACTGAGTAAAGAAGC+AGG + chr3.2:61501934-61501953 MS.gene62277:CDS 35.0%
TAAGGAAGTTGCTGATGAAT+TGG + chr3.2:61503340-61503359 MS.gene62277:CDS 35.0%
TATGTTGTCTTCTCAACGAA+AGG + chr3.2:61501843-61501862 MS.gene62277:CDS 35.0%
TGATAAGCATGGTAGAAAGT+TGG - chr3.2:61502090-61502109 None:intergenic 35.0%
TGTCGTAAATTTGAGAGCTT+TGG + chr3.2:61503077-61503096 MS.gene62277:CDS 35.0%
TTAAGAAACTCAACAGCTTC+TGG - chr3.2:61503323-61503342 None:intergenic 35.0%
TTAGGACTTAAGAATGTGGA+TGG + chr3.2:61501754-61501773 MS.gene62277:CDS 35.0%
TTGGAAGCCAAAAGTAGATA+TGG + chr3.2:61501516-61501535 MS.gene62277:CDS 35.0%
TTTATTAGGATCGTCACAGA+AGG + chr3.2:61503287-61503306 MS.gene62277:CDS 35.0%
! AAATTTGTCCCCGCTTTATT+AGG + chr3.2:61503273-61503292 MS.gene62277:CDS 35.0%
! ATCAGATCACCAATGTGTTT+TGG + chr3.2:61502124-61502143 MS.gene62277:intron 35.0%
! CCGAAAACCATATCTACTTT+TGG - chr3.2:61501526-61501545 None:intergenic 35.0%
! GACAACATATGAGTTGTTTC+TGG - chr3.2:61501832-61501851 None:intergenic 35.0%
! TCAGATCACCAATGTGTTTT+GGG + chr3.2:61502125-61502144 MS.gene62277:intron 35.0%
! TTCTCCCATATTCCTTTTCT+TGG - chr3.2:61503012-61503031 None:intergenic 35.0%
!!! ATTGATGGTGCATGATTTTG+TGG + chr3.2:61501780-61501799 MS.gene62277:CDS 35.0%
AAAACTTACGGTGGTAAGGT+TGG + chr3.2:61501574-61501593 MS.gene62277:CDS 40.0%
ACATAAACCATGGTAAGCTC+CGG - chr3.2:61502433-61502452 None:intergenic 40.0%
AGCATGCTTTGTGAAAAGCA+TGG + chr3.2:61502953-61502972 MS.gene62277:CDS 40.0%
CAAAAATTACAGCTCCTCGA+TGG - chr3.2:61502266-61502285 None:intergenic 40.0%
CAAACAACTCATACTCACGT+TGG - chr3.2:61502932-61502951 None:intergenic 40.0%
CCAGAACAAATTGTGAAGCA+AGG + chr3.2:61501731-61501750 MS.gene62277:CDS 40.0%
CTGTGACGATCCTAATAAAG+CGG - chr3.2:61503286-61503305 None:intergenic 40.0%
CTTACCATGGTTTATGTACG+TGG + chr3.2:61502436-61502455 MS.gene62277:intron 40.0%
GAATACGAGTTCTTCAGTCT+TGG - chr3.2:61502855-61502874 None:intergenic 40.0%
TAGTCATGTTGCAGAAGACT+TGG + chr3.2:61503223-61503242 MS.gene62277:CDS 40.0%
TGTGACGATCCTAATAAAGC+GGG - chr3.2:61503285-61503304 None:intergenic 40.0%
TTACTGAGTAAAGAAGCAGG+AGG + chr3.2:61501937-61501956 MS.gene62277:CDS 40.0%
TTTGTTCTGGTCTCTAGTCT+TGG - chr3.2:61501721-61501740 None:intergenic 40.0%
! AGGTTTGTTTGCTGCAAAGA+AGG + chr3.2:61501655-61501674 MS.gene62277:CDS 40.0%
! ATTGAACTAGCTGATAGTGC+CGG + chr3.2:61501889-61501908 MS.gene62277:CDS 40.0%
! CATCGAGGAGCTGTAATTTT+TGG + chr3.2:61502264-61502283 MS.gene62277:intron 40.0%
! CCTTGCTTCACAATTTGTTC+TGG - chr3.2:61501734-61501753 None:intergenic 40.0%
! CGATTTCCTTTGTTGTACAC+CGG - chr3.2:61501911-61501930 None:intergenic 40.0%
! GTTTTATGATCTCGCTTGTC+TGG - chr3.2:61501691-61501710 None:intergenic 40.0%
! TTTCTGGCAAATGTAACTCG+TGG - chr3.2:61501816-61501835 None:intergenic 40.0%
!! TGGGAGTTCTGGAAAACTTA+CGG + chr3.2:61501562-61501581 MS.gene62277:CDS 40.0%
AAACTGCTGAGTCATACGAG+TGG + chr3.2:61502307-61502326 MS.gene62277:intron 45.0%
AAATTACAGCTCCTCGATGG+TGG - chr3.2:61502263-61502282 None:intergenic 45.0%
AAGAAGTTTGGTACAAGGGG+AGG + chr3.2:61502020-61502039 MS.gene62277:intron 45.0%
AATCCCGAGATGATTGCTAG+TGG - chr3.2:61502237-61502256 None:intergenic 45.0%
ACGGTGGTAAGGTTGGATTT+GGG + chr3.2:61501581-61501600 MS.gene62277:CDS 45.0%
ACGTGGCACTTGATGCAAAA+TGG + chr3.2:61502453-61502472 MS.gene62277:intron 45.0%
AGACCACTAGCAATCATCTC+GGG + chr3.2:61502231-61502250 MS.gene62277:intron 45.0%
AGCATCTGCCCAAAACACAT+TGG - chr3.2:61502136-61502155 None:intergenic 45.0%
AGTGCCACGTACATAAACCA+TGG - chr3.2:61502443-61502462 None:intergenic 45.0%
ATGGCAAGTGACCTTCGATT+TGG + chr3.2:61503031-61503050 MS.gene62277:CDS 45.0%
CAGACCACTAGCAATCATCT+CGG + chr3.2:61502230-61502249 MS.gene62277:intron 45.0%
CATAAACCATGGTAAGCTCC+GGG - chr3.2:61502432-61502451 None:intergenic 45.0%
CTGGAAAACTTACGGTGGTA+AGG + chr3.2:61501570-61501589 MS.gene62277:CDS 45.0%
GCAAATGTAACTCGTGGTTG+TGG - chr3.2:61501810-61501829 None:intergenic 45.0%
GTGACGATCCTAATAAAGCG+GGG - chr3.2:61503284-61503303 None:intergenic 45.0%
TACGGTGGTAAGGTTGGATT+TGG + chr3.2:61501580-61501599 MS.gene62277:CDS 45.0%
TTGAAGATGCTTGGGAGTTC+TGG + chr3.2:61501551-61501570 MS.gene62277:CDS 45.0%
! GATGGTGCATGATTTTGTGG+AGG + chr3.2:61501783-61501802 MS.gene62277:CDS 45.0%
!! AATGGCAAAAGCATTAGCCG+AGG + chr3.2:61502401-61502420 MS.gene62277:intron 45.0%
!! ATAGTGCCGGTGTACAACAA+AGG + chr3.2:61501902-61501921 MS.gene62277:CDS 45.0%
!! ATGTGTTTTGGGCAGATGCT+AGG + chr3.2:61502136-61502155 MS.gene62277:intron 45.0%
!! CGGTAGCTTTGAAGATGCTT+GGG + chr3.2:61501543-61501562 MS.gene62277:CDS 45.0%
!! GAGTTCTGGAAAACTTACGG+TGG + chr3.2:61501565-61501584 MS.gene62277:CDS 45.0%
!! TCGGTAGCTTTGAAGATGCT+TGG + chr3.2:61501542-61501561 MS.gene62277:CDS 45.0%
AGCAGGAGGCAGAACTAACT+TGG + chr3.2:61501951-61501970 MS.gene62277:CDS 50.0%
CGGTGGTAAGGTTGGATTTG+GGG + chr3.2:61501582-61501601 MS.gene62277:CDS 50.0%
GCAGGAGGCAGAACTAACTT+GGG + chr3.2:61501952-61501971 MS.gene62277:CDS 50.0%
TCGGGATTTAACCACCATCG+AGG + chr3.2:61502249-61502268 MS.gene62277:intron 50.0%
! GTAAGGTTGGATTTGGGGTG+AGG + chr3.2:61501587-61501606 MS.gene62277:CDS 50.0%
AGTTTGGTACAAGGGGAGGC+TGG + chr3.2:61502024-61502043 MS.gene62277:intron 55.0%
GCATTAGCCGAGGTTATGCC+CGG + chr3.2:61502411-61502430 MS.gene62277:intron 55.0%
GTAAGCTCCGGGCATAACCT+CGG - chr3.2:61502421-61502440 None:intergenic 55.0%
GTTATGCCCGGAGCTTACCA+TGG + chr3.2:61502423-61502442 MS.gene62277:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 61501505 61503403 61501505 ID=MS.gene62277
chr3.2 mRNA 61501505 61503403 61501505 ID=MS.gene62277.t1;Parent=MS.gene62277
chr3.2 exon 61501505 61502029 61501505 ID=MS.gene62277.t1.exon1;Parent=MS.gene62277.t1
chr3.2 CDS 61501505 61502029 61501505 ID=cds.MS.gene62277.t1;Parent=MS.gene62277.t1
chr3.2 exon 61502534 61503403 61502534 ID=MS.gene62277.t1.exon2;Parent=MS.gene62277.t1
chr3.2 CDS 61502534 61503403 61502534 ID=cds.MS.gene62277.t1;Parent=MS.gene62277.t1
Gene Sequence

>MS.gene62277

ATGAATGAAGATTGGAAGCCAAAAGTAGATATGGTTTTCGGTAGCTTTGAAGATGCTTGGGAGTTCTGGAAAACTTACGGTGGTAAGGTTGGATTTGGGGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAGACAAGCGAGATCATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGGTTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGCAGGAGGCAGAACTAACTTGGGTTTTATTCGTCTTGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATACTTTCAAAGAAAGTCAGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTAGCAATCATCTCGGGATTTAACCACCATCGAGGAGCTGTAATTTTTGGAACTGCATTATTATATGATGAAACTGCTGAGTCATACGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGTAGAAAATGCCTCATACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCATTAGCCGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCCTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAGTATAAAGGAGAAATGGGCATCTTGTTACACGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACTTAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGAACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCCAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCAGAGCCTTATATTTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTTGCAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTATTAGGATCGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTTGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGTTGAAGTTTCAAAATATGCAAATTAAGTAG
Protein sequence

>MS.gene62277.t1

MNEDWKPKVDMVFGSFEDAWEFWKTYGGKVGFGVRKDYTHRKKDGSVSSCRFVCCKEGIRKPDKRDHKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKVSEIQCQQIELADSAGVQQRKSFDLLSKEAGGRTNLGFIRLDQKNYLRKKRERSLKCMYGYEDEEQFEDGWTSLLIKYGVQKNDWLQRMYSIKEKWASCYTKKTLTLGMRSTQLSESVNADIKNFMSKDLDLIKFFERFEDVVEEKRYKELKCEFEERQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKIARSRASQTIGVSHVAEDLDLSPAQCYKEICPRFIRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQIK