Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62378.t1 | XP_013451508.1 | 97.7 | 302 | 4 | 1 | 1 | 302 | 1 | 299 | 1.50E-83 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62378.t1 | Q6X7J3 | 52.9 | 280 | 86 | 4 | 27 | 300 | 28 | 267 | 5.3e-42 | 172.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62378.t1 | A0A072U832 | 97.7 | 302 | 4 | 1 | 1 | 302 | 1 | 299 | 1.1e-83 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62378.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62378.t1 | MTR_6g027390 | 90.391 | 281 | 22 | 2 | 24 | 303 | 24 | 300 | 1.45e-142 | 404 |
| MS.gene62378.t1 | MTR_7g086940 | 46.372 | 317 | 109 | 9 | 1 | 302 | 1 | 271 | 9.65e-72 | 223 |
| MS.gene62378.t1 | MTR_2g015000 | 62.500 | 72 | 27 | 0 | 24 | 95 | 47 | 118 | 2.18e-27 | 111 |
| MS.gene62378.t1 | MTR_7g025010 | 62.857 | 70 | 26 | 0 | 24 | 93 | 39 | 108 | 3.61e-27 | 111 |
| MS.gene62378.t1 | MTR_4g088080 | 55.556 | 81 | 33 | 1 | 12 | 89 | 17 | 97 | 6.53e-23 | 96.7 |
| MS.gene62378.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 30 | 92 | 27 | 89 | 7.23e-23 | 97.8 |
| MS.gene62378.t1 | MTR_8g107210 | 43.333 | 90 | 50 | 1 | 11 | 99 | 75 | 164 | 6.57e-17 | 80.5 |
| MS.gene62378.t1 | MTR_4g084550 | 36.264 | 91 | 50 | 2 | 7 | 96 | 45 | 128 | 1.06e-15 | 74.3 |
| MS.gene62378.t1 | MTR_1g115315 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 5.32e-14 | 70.9 |
| MS.gene62378.t1 | MTR_1g115315 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 1.09e-13 | 70.1 |
| MS.gene62378.t1 | MTR_3g115620 | 47.692 | 65 | 34 | 0 | 28 | 92 | 78 | 142 | 2.15e-13 | 68.6 |
| MS.gene62378.t1 | MTR_5g081990 | 37.500 | 64 | 40 | 0 | 32 | 95 | 33 | 96 | 4.25e-12 | 64.3 |
| MS.gene62378.t1 | MTR_5g021930 | 40.625 | 64 | 37 | 1 | 31 | 93 | 29 | 92 | 5.22e-12 | 65.9 |
| MS.gene62378.t1 | MTR_4g063735 | 40.299 | 67 | 40 | 0 | 32 | 98 | 25 | 91 | 5.69e-12 | 65.1 |
| MS.gene62378.t1 | MTR_7g060630 | 40.625 | 64 | 38 | 0 | 31 | 94 | 7 | 70 | 1.11e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62378.t1 | AT3G03660 | 50.831 | 301 | 112 | 7 | 3 | 301 | 2 | 268 | 6.09e-71 | 221 |
| MS.gene62378.t1 | AT5G17810 | 50.000 | 286 | 99 | 7 | 26 | 300 | 15 | 267 | 9.29e-71 | 220 |
| MS.gene62378.t1 | AT5G17810 | 50.000 | 286 | 99 | 7 | 26 | 300 | 15 | 267 | 9.29e-71 | 220 |
| MS.gene62378.t1 | AT5G17810 | 50.000 | 286 | 98 | 7 | 26 | 300 | 15 | 266 | 1.29e-70 | 219 |
| MS.gene62378.t1 | AT3G03660 | 51.178 | 297 | 109 | 7 | 3 | 297 | 2 | 264 | 5.56e-69 | 216 |
| MS.gene62378.t1 | AT3G03660 | 47.962 | 319 | 123 | 7 | 3 | 301 | 2 | 297 | 6.98e-69 | 216 |
| MS.gene62378.t1 | AT3G03660 | 48.726 | 314 | 120 | 7 | 3 | 297 | 2 | 293 | 4.38e-67 | 213 |
| MS.gene62378.t1 | AT2G33880 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.41e-27 | 110 |
| MS.gene62378.t1 | AT2G33880 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.59e-27 | 110 |
| MS.gene62378.t1 | AT5G45980 | 57.534 | 73 | 31 | 0 | 30 | 102 | 53 | 125 | 8.22e-26 | 104 |
| MS.gene62378.t1 | AT4G35550 | 47.692 | 65 | 34 | 0 | 28 | 92 | 95 | 159 | 2.51e-14 | 72.0 |
| MS.gene62378.t1 | AT3G18010 | 40.000 | 80 | 47 | 1 | 29 | 107 | 73 | 152 | 7.14e-14 | 71.6 |
| MS.gene62378.t1 | AT5G59340 | 39.706 | 68 | 41 | 0 | 31 | 98 | 13 | 80 | 7.74e-13 | 67.8 |
| MS.gene62378.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 29 | 99 | 1.04e-12 | 65.1 |
| MS.gene62378.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.65e-12 | 65.5 |
| MS.gene62378.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.80e-12 | 65.1 |
| MS.gene62378.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 31 | 93 | 37 | 100 | 3.01e-12 | 66.2 |
| MS.gene62378.t1 | AT2G28610 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 6.81e-12 | 64.7 |
| MS.gene62378.t1 | AT3G11260 | 34.884 | 86 | 47 | 1 | 32 | 117 | 24 | 100 | 7.22e-12 | 63.5 |
| MS.gene62378.t1 | AT1G46480 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 3.84e-11 | 61.6 |
| MS.gene62378.t1 | AT5G05770 | 37.500 | 64 | 40 | 0 | 32 | 95 | 29 | 92 | 6.77e-11 | 59.3 |
Find 75 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTTCTTGAGAAATT+TGG | 0.058535 | 6.4:-2029290 | MS.gene62378:CDS |
| ATTCTCACGGTTTCATCTTT+TGG | 0.207436 | 6.4:+2029314 | None:intergenic |
| GACCATTCCACTATTGAAAA+TGG | 0.216187 | 6.4:+2029343 | None:intergenic |
| GAAAACTTCTTGAGAAATTT+GGG | 0.221281 | 6.4:-2029289 | MS.gene62378:CDS |
| GTGCTGGTGGTGCTGGAGTT+GGG | 0.283496 | 6.4:-2029007 | MS.gene62378:CDS |
| ATAAGGATTTGTTCAGGTTT+TGG | 0.291953 | 6.4:+2029374 | None:intergenic |
| TGAAAATGGATTCAAGTATA+AGG | 0.302638 | 6.4:+2029357 | None:intergenic |
| GTTGGTGCTGGTGCTGGTGC+TGG | 0.304217 | 6.4:-2028984 | MS.gene62378:CDS |
| TCATCATGTGCTGGTGGTGC+TGG | 0.307266 | 6.4:-2029014 | MS.gene62378:CDS |
| GTTGGGGTTGGTGCTGGTGC+TGG | 0.316862 | 6.4:-2028990 | MS.gene62378:CDS |
| CTTGGTGCTGCACTTGGTCT+TGG | 0.327659 | 6.4:-2029107 | MS.gene62378:CDS |
| GCTGGTGTTGGTCTTGGTCT+TGG | 0.334704 | 6.4:-2028966 | MS.gene62378:CDS |
| CTGCACTGGTATTGGTGATA+TGG | 0.337777 | 6.4:+2029152 | None:intergenic |
| TGTGCTGGTGGTGCTGGAGT+TGG | 0.339388 | 6.4:-2029008 | MS.gene62378:CDS |
| CTGTCTCTTGGTGCTGCACT+TGG | 0.345570 | 6.4:-2029113 | MS.gene62378:CDS |
| GCTGGAGTTGGGGTTGGTGC+TGG | 0.345633 | 6.4:-2028996 | MS.gene62378:CDS |
| AGGGTTTGGTGGTTTGTACT+TGG | 0.351429 | 6.4:-2028922 | MS.gene62378:CDS |
| CTTGGTCTTGGTGCTGCTGC+TGG | 0.354290 | 6.4:-2028954 | MS.gene62378:CDS |
| GTAATATTGGTTCATTCCTC+TGG | 0.359362 | 6.4:-2027207 | MS.gene62378:CDS |
| GCTGGTGCTGGTGTTGGTCT+TGG | 0.361928 | 6.4:-2028972 | MS.gene62378:CDS |
| TCAGTTCCAACCAATGAGTT+TGG | 0.369989 | 6.4:-2027180 | MS.gene62378:CDS |
| GTTTGGTGAAGATGTAATAT+TGG | 0.373946 | 6.4:-2027220 | MS.gene62378:CDS |
| TCAAATCAATTTGCCTCAAA+TGG | 0.378394 | 6.4:-2028892 | MS.gene62378:CDS |
| TGTTGGTGCTGCACTGGTAT+TGG | 0.396373 | 6.4:+2029144 | None:intergenic |
| GGTGGTGCTGGAGTTGGGGT+TGG | 0.401121 | 6.4:-2029002 | MS.gene62378:CDS |
| GCTGGTGCTGGTGCTGGTGT+TGG | 0.403303 | 6.4:-2028978 | MS.gene62378:CDS |
| TCAAGTATAAGGATTTGTTC+AGG | 0.405750 | 6.4:+2029368 | None:intergenic |
| CAGTACTGCCACCGCTTAGT+TGG | 0.406811 | 6.4:+2029180 | None:intergenic |
| GTACCCCTTGGCATTTCTGT+TGG | 0.414376 | 6.4:+2027264 | None:intergenic |
| AGTACTGCCACCGCTTAGTT+GGG | 0.417375 | 6.4:+2029181 | None:intergenic |
| CTTGAGAAATTTGGGGCTGT+TGG | 0.419557 | 6.4:-2029281 | MS.gene62378:CDS |
| GCATGGTGAAAGCTACTATC+TGG | 0.420994 | 6.4:-2027136 | MS.gene62378:intron |
| GCTGGTGGAGAACAAGGGTT+TGG | 0.431515 | 6.4:-2028936 | MS.gene62378:CDS |
| GGTGCTGCACTTGGTCTTGG+TGG | 0.436302 | 6.4:-2029104 | MS.gene62378:CDS |
| ATTGACATGAAAACAATGTT+TGG | 0.438397 | 6.4:-2027237 | MS.gene62378:CDS |
| GTTGTTTGGATTATTAGTAT+TGG | 0.439777 | 6.4:+2029433 | None:intergenic |
| CATCTGCCTCTGACGGCGTC+GGG | 0.463584 | 6.4:+2029214 | None:intergenic |
| GCATCTGCCTCTGACGGCGT+CGG | 0.466933 | 6.4:+2029213 | None:intergenic |
| GGGTTTGGTGGTTTGTACTT+GGG | 0.468528 | 6.4:-2028921 | MS.gene62378:CDS |
| GCTGAAGTATTGTCCATTTG+AGG | 0.472860 | 6.4:+2028879 | None:intergenic |
| TGCTGGTGGTGCTGGAGTTG+GGG | 0.474984 | 6.4:-2029006 | MS.gene62378:CDS |
| GCTGCTGCTGGTGGAGAACA+AGG | 0.478164 | 6.4:-2028942 | MS.gene62378:CDS |
| GGTGGAGAACAAGGGTTTGG+TGG | 0.479255 | 6.4:-2028933 | MS.gene62378:CDS |
| GGTTCGTCTTCATCATGTGC+TGG | 0.479575 | 6.4:-2029023 | MS.gene62378:CDS |
| TCAAATTTCAACTATTACCC+AGG | 0.481334 | 6.4:-2028822 | MS.gene62378:intron |
| AACAGTACCTCTCTGTCTCT+TGG | 0.490108 | 6.4:-2029125 | MS.gene62378:CDS |
| CATCAAGAAACCAAACTCAT+TGG | 0.493495 | 6.4:+2027170 | None:intergenic |
| AAGAAACCAAACTCATTGGT+TGG | 0.499044 | 6.4:+2027174 | None:intergenic |
| GTGATCACAGTGTTTATCAA+TGG | 0.505244 | 6.4:-2027291 | MS.gene62378:CDS |
| AGGTACTGTTGGTGCTGCAC+TGG | 0.511056 | 6.4:+2029138 | None:intergenic |
| CTCGCTCCCGACGCCGTCAG+AGG | 0.513233 | 6.4:-2029220 | MS.gene62378:CDS |
| CGGCCTGCATCTGCCTCTGA+CGG | 0.528621 | 6.4:+2029207 | None:intergenic |
| ACGCCGTCAGAGGCAGATGC+AGG | 0.537355 | 6.4:-2029210 | MS.gene62378:CDS |
| GACGGCGTCGGGAGCGAGAG+CGG | 0.542417 | 6.4:+2029225 | None:intergenic |
| GGTCTTGGTGCTGCTGCTGG+TGG | 0.543398 | 6.4:-2028951 | MS.gene62378:CDS |
| ATGTCAATTGCAGTACCCCT+TGG | 0.550699 | 6.4:+2027252 | None:intergenic |
| AAAACTTCTTGAGAAATTTG+GGG | 0.575317 | 6.4:-2029288 | MS.gene62378:CDS |
| AAATTTGAAGCATGATCAGA+AGG | 0.576369 | 6.4:+2028837 | None:intergenic |
| GAGTTCCAACAGAAATGCCA+AGG | 0.583354 | 6.4:-2027269 | MS.gene62378:CDS |
| GCCGCCGCCCAACTAAGCGG+TGG | 0.588442 | 6.4:-2029188 | MS.gene62378:CDS |
| GTGAAACTGTGAGATCAAGA+TGG | 0.590101 | 6.4:-2029400 | MS.gene62378:CDS |
| ACTGCCACCGCTTAGTTGGG+CGG | 0.608647 | 6.4:+2029184 | None:intergenic |
| AGAATTCATAGTGAAAGTTG+AGG | 0.624134 | 6.4:+2029079 | None:intergenic |
| CAGGTGTCAAAGCAAGCACA+AGG | 0.639194 | 6.4:-2026836 | MS.gene62378:CDS |
| GCCACCGCTTAGTTGGGCGG+CGG | 0.641411 | 6.4:+2029187 | None:intergenic |
| CAGGCCGCCGCCCAACTAAG+CGG | 0.643678 | 6.4:-2029191 | MS.gene62378:CDS |
| TGCAGCACCAAGAGACAGAG+AGG | 0.645908 | 6.4:+2029118 | None:intergenic |
| AACTTTGAGACTGAACATGT+TGG | 0.650519 | 6.4:+2029456 | None:intergenic |
| TCGTCTTCATCATGTGCTGG+TGG | 0.662728 | 6.4:-2029020 | MS.gene62378:CDS |
| AAGAGACAGAGAGGTACTGT+TGG | 0.665242 | 6.4:+2029127 | None:intergenic |
| CTGCTGCTGGTGGAGAACAA+GGG | 0.666668 | 6.4:-2028941 | MS.gene62378:CDS |
| TTGATGCAGAACTTGCAGCA+TGG | 0.678300 | 6.4:-2027153 | MS.gene62378:CDS |
| AGTTCCAACAGAAATGCCAA+GGG | 0.681583 | 6.4:-2027268 | MS.gene62378:CDS |
| GGTTGGAACTGAGACTCCAG+AGG | 0.711041 | 6.4:+2027191 | None:intergenic |
| GTTCCAACAGAAATGCCAAG+GGG | 0.773173 | 6.4:-2027267 | MS.gene62378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTATATTAATTTTA+GGG | - | chr6.4:2028961-2028980 | MS.gene62378:CDS | 0.0% |
| !!! | TATTTATTTATATTAATTTT+AGG | - | chr6.4:2028960-2028979 | MS.gene62378:CDS | 0.0% |
| !! | AACTTTCAAAAAAAAAAAAA+TGG | + | chr6.4:2027696-2027715 | None:intergenic | 10.0% |
| !!! | AAATAAAACTATTCTTTTTT+TGG | - | chr6.4:2028014-2028033 | MS.gene62378:intron | 10.0% |
| !!! | AATATCATATTTTTTTGAAA+AGG | + | chr6.4:2027752-2027771 | None:intergenic | 10.0% |
| !!! | ATATCATATTTTTTTGAAAA+GGG | + | chr6.4:2027751-2027770 | None:intergenic | 10.0% |
| !!! | GTTCATAAAAATTTTTTTAT+AGG | + | chr6.4:2027547-2027566 | None:intergenic | 10.0% |
| !!! | GTTTAGAAATTTTTAAATTA+AGG | + | chr6.4:2028243-2028262 | None:intergenic | 10.0% |
| !!! | TACTTATAATAATAACTTTT+CGG | - | chr6.4:2027263-2027282 | MS.gene62378:CDS | 10.0% |
| !!! | TTATTTATATTAATTTTAGG+GGG | - | chr6.4:2028963-2028982 | MS.gene62378:CDS | 10.0% |
| !!! | TTATTTCAAAAACTTTATTT+AGG | + | chr6.4:2029432-2029451 | None:intergenic | 10.0% |
| !! | GAAAAATAAGTTAAAAAAGA+AGG | + | chr6.4:2028433-2028452 | None:intergenic | 15.0% |
| !!! | ACTTATAATAATAACTTTTC+GGG | - | chr6.4:2027264-2027283 | MS.gene62378:CDS | 15.0% |
| !!! | AGTTTTTGAAATAAATGTTT+TGG | - | chr6.4:2029438-2029457 | MS.gene62378:CDS | 15.0% |
| !!! | CATTTTTTTAAACTAATCAA+TGG | + | chr6.4:2028320-2028339 | None:intergenic | 15.0% |
| !!! | TATCATATTTTTTTGAAAAG+GGG | + | chr6.4:2027750-2027769 | None:intergenic | 15.0% |
| !!! | TTAAACAAAAGAGTATTTAA+AGG | + | chr6.4:2027886-2027905 | None:intergenic | 15.0% |
| !!! | TTAAATTAAGGAATTAGTTT+TGG | + | chr6.4:2028231-2028250 | None:intergenic | 15.0% |
| !!! | TTTAATGAAGTTTTTTTTGA+AGG | - | chr6.4:2028855-2028874 | MS.gene62378:CDS | 15.0% |
| !! | GATTGAAGAATTAATAAAAG+TGG | - | chr6.4:2028058-2028077 | MS.gene62378:intron | 20.0% |
| !! | GTTAAGATGATTACAAAATT+TGG | + | chr6.4:2027722-2027741 | None:intergenic | 20.0% |
| !! | TAATTGTATGTTTCAATTGT+CGG | + | chr6.4:2028770-2028789 | None:intergenic | 20.0% |
| !! | TTCACTAATTTGGTATAATA+TGG | + | chr6.4:2028397-2028416 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTGTCCTTAAAA+AGG | + | chr6.4:2027799-2027818 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTGAAAAGG+GGG | + | chr6.4:2027749-2027768 | None:intergenic | 20.0% |
| ! | AAAACTTCTTGAGAAATTTG+GGG | - | chr6.4:2027020-2027039 | MS.gene62378:intron | 25.0% |
| ! | AATAAATTAAGCACATACCT+GGG | + | chr6.4:2027506-2027525 | None:intergenic | 25.0% |
| ! | ACCTCTCAAAAATAGTTTAA+AGG | - | chr6.4:2029311-2029330 | MS.gene62378:CDS | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+TGG | - | chr6.4:2027018-2027037 | MS.gene62378:intron | 25.0% |
| ! | AGAAAGGAATGTGATAAAAA+GGG | + | chr6.4:2028199-2028218 | None:intergenic | 25.0% |
| ! | AGCAATTTCTTTCACTAATT+TGG | + | chr6.4:2028407-2028426 | None:intergenic | 25.0% |
| ! | ATGTGCTTAATTTATTGCAT+GGG | - | chr6.4:2027510-2027529 | MS.gene62378:intron | 25.0% |
| ! | ATTGACATGAAAACAATGTT+TGG | - | chr6.4:2029071-2029090 | MS.gene62378:CDS | 25.0% |
| ! | GAAAACTTCTTGAGAAATTT+GGG | - | chr6.4:2027019-2027038 | MS.gene62378:intron | 25.0% |
| ! | GAATAGACAAAAACAATCTA+GGG | + | chr6.4:2028265-2028284 | None:intergenic | 25.0% |
| ! | GTTGTTTGGATTATTAGTAT+TGG | + | chr6.4:2026878-2026897 | None:intergenic | 25.0% |
| ! | TATGTGCTTAATTTATTGCA+TGG | - | chr6.4:2027509-2027528 | MS.gene62378:intron | 25.0% |
| ! | TGAATAGACAAAAACAATCT+AGG | + | chr6.4:2028266-2028285 | None:intergenic | 25.0% |
| !! | AAGAAGTTTTCTTATTCTCA+CGG | + | chr6.4:2027010-2027029 | None:intergenic | 25.0% |
| !! | AGTTTTCAACAAAATTGTCA+TGG | - | chr6.4:2028720-2028739 | MS.gene62378:intron | 25.0% |
| !! | ATTTTTATCCCAACTTAAAC+AGG | - | chr6.4:2027638-2027657 | MS.gene62378:intron | 25.0% |
| !! | TGAAAATGGATTCAAGTATA+AGG | + | chr6.4:2026954-2026973 | None:intergenic | 25.0% |
| !! | TTCAAGACAAAACCTTTTTA+AGG | - | chr6.4:2027784-2027803 | MS.gene62378:intron | 25.0% |
| !! | TTTTTATCACATTCCTTTCT+GGG | - | chr6.4:2028199-2028218 | MS.gene62378:intron | 25.0% |
| !!! | ACCTTTAAACTATTTTTGAG+AGG | + | chr6.4:2029315-2029334 | None:intergenic | 25.0% |
| !!! | ATATTAATTTTAGGGGGAAT+AGG | - | chr6.4:2028969-2028988 | MS.gene62378:CDS | 25.0% |
| !!! | ATTTTGTTATACTCTTCTCT+AGG | - | chr6.4:2028294-2028313 | MS.gene62378:intron | 25.0% |
| !!! | TATGCTTTTTATTTAATCCC+AGG | + | chr6.4:2028109-2028128 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGGAATGAATGAA+GGG | + | chr6.4:2028515-2028534 | None:intergenic | 25.0% |
| AAATAATGCCACGACAAATT+TGG | + | chr6.4:2028820-2028839 | None:intergenic | 30.0% | |
| AGAATTCATAGTGAAAGTTG+AGG | + | chr6.4:2027232-2027251 | None:intergenic | 30.0% | |
| ATAATGAACCAAATTTGTCG+TGG | - | chr6.4:2028809-2028828 | MS.gene62378:intron | 30.0% | |
| CAATAAATTAAGCACATACC+TGG | + | chr6.4:2027507-2027526 | None:intergenic | 30.0% | |
| CAGAAAGGAATGTGATAAAA+AGG | + | chr6.4:2028200-2028219 | None:intergenic | 30.0% | |
| CTTCATTCATTCCAGAAAAA+AGG | - | chr6.4:2028514-2028533 | MS.gene62378:intron | 30.0% | |
| GAATCTACAACAATTGTCAA+AGG | + | chr6.4:2027966-2027985 | None:intergenic | 30.0% | |
| TCAAATCAATTTGCCTCAAA+TGG | - | chr6.4:2027416-2027435 | MS.gene62378:intron | 30.0% | |
| TCAAATTTCAACTATTACCC+AGG | - | chr6.4:2027486-2027505 | MS.gene62378:intron | 30.0% | |
| TGTAAGAAACCTGTTTAAGT+TGG | + | chr6.4:2027650-2027669 | None:intergenic | 30.0% | |
| ! | AAAGTGAACTCATGTTTTTC+CGG | + | chr6.4:2028154-2028173 | None:intergenic | 30.0% |
| ! | AAATTTGAAGCATGATCAGA+AGG | + | chr6.4:2027474-2027493 | None:intergenic | 30.0% |
| ! | AATCGATGATAATGCAAATG+TGG | - | chr6.4:2028610-2028629 | MS.gene62378:intron | 30.0% |
| ! | CTTGAATCCATTTTCAATAG+TGG | - | chr6.4:2026958-2026977 | MS.gene62378:intron | 30.0% |
| ! | CTTTTTATCACATTCCTTTC+TGG | - | chr6.4:2028198-2028217 | MS.gene62378:intron | 30.0% |
| ! | GTAAGAAACCTGTTTAAGTT+GGG | + | chr6.4:2027649-2027668 | None:intergenic | 30.0% |
| ! | GTTGTACTAATCTTCTTTTC+CGG | - | chr6.4:2028132-2028151 | MS.gene62378:intron | 30.0% |
| ! | GTTTGGTGAAGATGTAATAT+TGG | - | chr6.4:2029088-2029107 | MS.gene62378:CDS | 30.0% |
| ! | TCAAGTATAAGGATTTGTTC+AGG | + | chr6.4:2026943-2026962 | None:intergenic | 30.0% |
| !! | ATAAGGATTTGTTCAGGTTT+TGG | + | chr6.4:2026937-2026956 | None:intergenic | 30.0% |
| !! | ATCCATTTTCAATAGTGGAA+TGG | - | chr6.4:2026963-2026982 | MS.gene62378:intron | 30.0% |
| !!! | CTTTTTTCTGGAATGAATGA+AGG | + | chr6.4:2028516-2028535 | None:intergenic | 30.0% |
| !!! | GTGATGCTAACGTTTTTTAT+TGG | - | chr6.4:2027049-2027068 | MS.gene62378:intron | 30.0% |
| !!! | TTTTTCTGGAATGAATGAAG+GGG | + | chr6.4:2028514-2028533 | None:intergenic | 30.0% |
| AAGAAACCAAACTCATTGGT+TGG | + | chr6.4:2029137-2029156 | None:intergenic | 35.0% | |
| AGACGACACTTATAATGAGA+CGG | + | chr6.4:2029226-2029245 | None:intergenic | 35.0% | |
| CATCAAGAAACCAAACTCAT+TGG | + | chr6.4:2029141-2029160 | None:intergenic | 35.0% | |
| GACCATTCCACTATTGAAAA+TGG | + | chr6.4:2026968-2026987 | None:intergenic | 35.0% | |
| GGAACTGTCAAATCAACAAA+AGG | + | chr6.4:2028088-2028107 | None:intergenic | 35.0% | |
| GTGATCACAGTGTTTATCAA+TGG | - | chr6.4:2029017-2029036 | MS.gene62378:CDS | 35.0% | |
| GTTTCAATTGTCGGTGATAT+TGG | + | chr6.4:2028761-2028780 | None:intergenic | 35.0% | |
| ! | ATTCTCACGGTTTCATCTTT+TGG | + | chr6.4:2026997-2027016 | None:intergenic | 35.0% |
| !! | AACTTTGAGACTGAACATGT+TGG | + | chr6.4:2026855-2026874 | None:intergenic | 35.0% |
| !! | ATTTTAGGGGGAATAGGATA+TGG | - | chr6.4:2028975-2028994 | MS.gene62378:CDS | 35.0% |
| !! | GTAATATTGGTTCATTCCTC+TGG | - | chr6.4:2029101-2029120 | MS.gene62378:CDS | 35.0% |
| !! | TCACTCTTTTCAGTGTTGTT+TGG | + | chr6.4:2026892-2026911 | None:intergenic | 35.0% |
| !! | TTGTTGATTTGACAGTTCCT+GGG | - | chr6.4:2028089-2028108 | MS.gene62378:intron | 35.0% |
| !! | TTTGTTGATTTGACAGTTCC+TGG | - | chr6.4:2028088-2028107 | MS.gene62378:intron | 35.0% |
| !! | TTTTAGGGGGAATAGGATAT+GGG | - | chr6.4:2028976-2028995 | MS.gene62378:CDS | 35.0% |
| !!! | TGTTTTGGTGTTTTTGTTCC+AGG | - | chr6.4:2029453-2029472 | MS.gene62378:CDS | 35.0% |
| AGTTCCAACAGAAATGCCAA+GGG | - | chr6.4:2029040-2029059 | MS.gene62378:CDS | 40.0% | |
| CCTTGGGAAGACAAAATGAA+GGG | + | chr6.4:2028472-2028491 | None:intergenic | 40.0% | |
| GTGAAACTGTGAGATCAAGA+TGG | - | chr6.4:2026908-2026927 | MS.gene62378:intron | 40.0% | |
| TCAGTTCCAACCAATGAGTT+TGG | - | chr6.4:2029128-2029147 | MS.gene62378:CDS | 40.0% | |
| TTTAGGGGGAATAGGATATG+GGG | - | chr6.4:2028977-2028996 | MS.gene62378:CDS | 40.0% | |
| !! | GCTGAAGTATTGTCCATTTG+AGG | + | chr6.4:2027432-2027451 | None:intergenic | 40.0% |
| !! | GTTTTGGATGAAACCCAGAA+AGG | + | chr6.4:2028215-2028234 | None:intergenic | 40.0% |
| !!! | CACTGTGATCTCCTTTTTTC+TGG | + | chr6.4:2028528-2028547 | None:intergenic | 40.0% |
| AACAGTACCTCTCTGTCTCT+TGG | - | chr6.4:2027183-2027202 | MS.gene62378:CDS | 45.0% | |
| ATGTCAATTGCAGTACCCCT+TGG | + | chr6.4:2029059-2029078 | None:intergenic | 45.0% | |
| CCTTTGTCACACTTTGCCTT+GGG | + | chr6.4:2028488-2028507 | None:intergenic | 45.0% | |
| GAGTTCCAACAGAAATGCCA+AGG | - | chr6.4:2029039-2029058 | MS.gene62378:CDS | 45.0% | |
| GCATGGTGAAAGCTACTATC+TGG | - | chr6.4:2029172-2029191 | MS.gene62378:CDS | 45.0% | |
| GCCTTGGGAAGACAAAATGA+AGG | + | chr6.4:2028473-2028492 | None:intergenic | 45.0% | |
| GTTCCAACAGAAATGCCAAG+GGG | - | chr6.4:2029041-2029060 | MS.gene62378:CDS | 45.0% | |
| TATGGGGGGAGTAATGTTTC+AGG | - | chr6.4:2028993-2029012 | MS.gene62378:CDS | 45.0% | |
| TCCTTTGTCACACTTTGCCT+TGG | + | chr6.4:2028489-2028508 | None:intergenic | 45.0% | |
| TTAGGGGGAATAGGATATGG+GGG | - | chr6.4:2028978-2028997 | MS.gene62378:CDS | 45.0% | |
| TTGATGCAGAACTTGCAGCA+TGG | - | chr6.4:2029155-2029174 | MS.gene62378:CDS | 45.0% | |
| ! | CCCTTCATTTTGTCTTCCCA+AGG | - | chr6.4:2028469-2028488 | MS.gene62378:intron | 45.0% |
| ! | CTCACGGTTTCATCTTTTGG+TGG | + | chr6.4:2026994-2027013 | None:intergenic | 45.0% |
| ! | CTTGAGAAATTTGGGGCTGT+TGG | - | chr6.4:2027027-2027046 | MS.gene62378:intron | 45.0% |
| !! | AAGAGACAGAGAGGTACTGT+TGG | + | chr6.4:2027184-2027203 | None:intergenic | 45.0% |
| !! | AGGGTTTGGTGGTTTGTACT+TGG | - | chr6.4:2027386-2027405 | MS.gene62378:intron | 45.0% |
| !! | CTGCACTGGTATTGGTGATA+TGG | + | chr6.4:2027159-2027178 | None:intergenic | 45.0% |
| !! | GGGTTTGGTGGTTTGTACTT+GGG | - | chr6.4:2027387-2027406 | MS.gene62378:intron | 45.0% |
| !! | TGAAATAAAAAAATTTATTT+AGG | + | chr6.4:2029400-2029419 | None:intergenic | 5.0% |
| !! | TTTAAAAAATATATAAAAGT+AGG | + | chr6.4:2027996-2028015 | None:intergenic | 5.0% |
| !!! | TTTATTTATATTAATTTTAG+GGG | - | chr6.4:2028962-2028981 | MS.gene62378:CDS | 5.0% |
| AGTACTGCCACCGCTTAGTT+GGG | + | chr6.4:2027130-2027149 | None:intergenic | 50.0% | |
| CAGGTGTCAAAGCAAGCACA+AGG | - | chr6.4:2029472-2029491 | MS.gene62378:CDS | 50.0% | |
| CCCAAGGCAAAGTGTGACAA+AGG | - | chr6.4:2028485-2028504 | MS.gene62378:intron | 50.0% | |
| CTTGTGCTTGCTTTGACACC+TGG | + | chr6.4:2029474-2029493 | None:intergenic | 50.0% | |
| GGTTCGTCTTCATCATGTGC+TGG | - | chr6.4:2027285-2027304 | MS.gene62378:CDS | 50.0% | |
| GTACCCCTTGGCATTTCTGT+TGG | + | chr6.4:2029047-2029066 | None:intergenic | 50.0% | |
| TAGGGGGAATAGGATATGGG+GGG | - | chr6.4:2028979-2028998 | MS.gene62378:CDS | 50.0% | |
| TCGTCTTCATCATGTGCTGG+TGG | - | chr6.4:2027288-2027307 | MS.gene62378:CDS | 50.0% | |
| !! | TGTTGGTGCTGCACTGGTAT+TGG | + | chr6.4:2027167-2027186 | None:intergenic | 50.0% |
| CAGTACTGCCACCGCTTAGT+TGG | + | chr6.4:2027131-2027150 | None:intergenic | 55.0% | |
| CTGCTGCTGGTGGAGAACAA+GGG | - | chr6.4:2027367-2027386 | MS.gene62378:intron | 55.0% | |
| GCTGGTGGAGAACAAGGGTT+TGG | - | chr6.4:2027372-2027391 | MS.gene62378:intron | 55.0% | |
| GGTGGAGAACAAGGGTTTGG+TGG | - | chr6.4:2027375-2027394 | MS.gene62378:intron | 55.0% | |
| GGTTGGAACTGAGACTCCAG+AGG | + | chr6.4:2029120-2029139 | None:intergenic | 55.0% | |
| TGCAGCACCAAGAGACAGAG+AGG | + | chr6.4:2027193-2027212 | None:intergenic | 55.0% | |
| ! | TCATCATGTGCTGGTGGTGC+TGG | - | chr6.4:2027294-2027313 | MS.gene62378:CDS | 55.0% |
| !! | AGGTACTGTTGGTGCTGCAC+TGG | + | chr6.4:2027173-2027192 | None:intergenic | 55.0% |
| !! | CTGTCTCTTGGTGCTGCACT+TGG | - | chr6.4:2027195-2027214 | MS.gene62378:CDS | 55.0% |
| !! | CTTGGTGCTGCACTTGGTCT+TGG | - | chr6.4:2027201-2027220 | MS.gene62378:CDS | 55.0% |
| !! | GCTGGTGTTGGTCTTGGTCT+TGG | - | chr6.4:2027342-2027361 | MS.gene62378:intron | 55.0% |
| ACTGCCACCGCTTAGTTGGG+CGG | + | chr6.4:2027127-2027146 | None:intergenic | 60.0% | |
| GCTGCTGCTGGTGGAGAACA+AGG | - | chr6.4:2027366-2027385 | MS.gene62378:intron | 60.0% | |
| ! | GTGCTGGTGGTGCTGGAGTT+GGG | - | chr6.4:2027301-2027320 | MS.gene62378:CDS | 60.0% |
| ! | TGCTGGTGGTGCTGGAGTTG+GGG | - | chr6.4:2027302-2027321 | MS.gene62378:CDS | 60.0% |
| ! | TGTGCTGGTGGTGCTGGAGT+TGG | - | chr6.4:2027300-2027319 | MS.gene62378:CDS | 60.0% |
| !! | CTTGGTCTTGGTGCTGCTGC+TGG | - | chr6.4:2027354-2027373 | MS.gene62378:intron | 60.0% |
| !! | GCTGGTGCTGGTGTTGGTCT+TGG | - | chr6.4:2027336-2027355 | MS.gene62378:intron | 60.0% |
| !! | GGTGCTGCACTTGGTCTTGG+TGG | - | chr6.4:2027204-2027223 | MS.gene62378:CDS | 60.0% |
| ACGCCGTCAGAGGCAGATGC+AGG | - | chr6.4:2027098-2027117 | MS.gene62378:intron | 65.0% | |
| CATCTGCCTCTGACGGCGTC+GGG | + | chr6.4:2027097-2027116 | None:intergenic | 65.0% | |
| CGGCCTGCATCTGCCTCTGA+CGG | + | chr6.4:2027104-2027123 | None:intergenic | 65.0% | |
| GCATCTGCCTCTGACGGCGT+CGG | + | chr6.4:2027098-2027117 | None:intergenic | 65.0% | |
| ! | GGTGGTGCTGGAGTTGGGGT+TGG | - | chr6.4:2027306-2027325 | MS.gene62378:CDS | 65.0% |
| !! | GCTGGAGTTGGGGTTGGTGC+TGG | - | chr6.4:2027312-2027331 | MS.gene62378:CDS | 65.0% |
| !! | GCTGGTGCTGGTGCTGGTGT+TGG | - | chr6.4:2027330-2027349 | MS.gene62378:intron | 65.0% |
| !! | GGTCTTGGTGCTGCTGCTGG+TGG | - | chr6.4:2027357-2027376 | MS.gene62378:intron | 65.0% |
| !! | GTTGGGGTTGGTGCTGGTGC+TGG | - | chr6.4:2027318-2027337 | MS.gene62378:CDS | 65.0% |
| !! | GTTGGTGCTGGTGCTGGTGC+TGG | - | chr6.4:2027324-2027343 | MS.gene62378:CDS | 65.0% |
| CAGGCCGCCGCCCAACTAAG+CGG | - | chr6.4:2027117-2027136 | MS.gene62378:intron | 70.0% | |
| GCCACCGCTTAGTTGGGCGG+CGG | + | chr6.4:2027124-2027143 | None:intergenic | 70.0% | |
| CTCGCTCCCGACGCCGTCAG+AGG | - | chr6.4:2027088-2027107 | MS.gene62378:intron | 75.0% | |
| GCCGCCGCCCAACTAAGCGG+TGG | - | chr6.4:2027120-2027139 | MS.gene62378:intron | 75.0% | |
| ! | GACGGCGTCGGGAGCGAGAG+CGG | + | chr6.4:2027086-2027105 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 2026832 | 2029498 | 2026832 | ID=MS.gene62378 |
| chr6.4 | mRNA | 2026832 | 2029498 | 2026832 | ID=MS.gene62378.t1;Parent=MS.gene62378 |
| chr6.4 | exon | 2028823 | 2029498 | 2028823 | ID=MS.gene62378.t1.exon1;Parent=MS.gene62378.t1 |
| chr6.4 | CDS | 2028823 | 2029498 | 2028823 | ID=cds.MS.gene62378.t1;Parent=MS.gene62378.t1 |
| chr6.4 | exon | 2027137 | 2027348 | 2027137 | ID=MS.gene62378.t1.exon2;Parent=MS.gene62378.t1 |
| chr6.4 | CDS | 2027137 | 2027348 | 2027137 | ID=cds.MS.gene62378.t1;Parent=MS.gene62378.t1 |
| chr6.4 | exon | 2026832 | 2026855 | 2026832 | ID=MS.gene62378.t1.exon3;Parent=MS.gene62378.t1 |
| chr6.4 | CDS | 2026832 | 2026855 | 2026832 | ID=cds.MS.gene62378.t1;Parent=MS.gene62378.t1 |
| Gene Sequence |
| Protein sequence |
