Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62382.t1 | XP_013451513.1 | 77.7 | 305 | 61 | 1 | 1 | 298 | 48 | 352 | 5.80E-125 | 457.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62382.t1 | Q93ZL5 | 69.7 | 89 | 24 | 2 | 30 | 115 | 117 | 205 | 1.3e-29 | 131.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62382.t1 | A0A072U836 | 77.7 | 305 | 61 | 1 | 1 | 298 | 48 | 352 | 4.2e-125 | 457.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene62382.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62382.t1 | MTR_6g027450 | 90.268 | 298 | 20 | 2 | 1 | 298 | 41 | 329 | 0.0 | 543 |
MS.gene62382.t1 | MTR_6g027460 | 77.551 | 294 | 59 | 1 | 1 | 287 | 48 | 341 | 8.02e-165 | 462 |
MS.gene62382.t1 | MTR_7g086780 | 53.448 | 290 | 113 | 7 | 10 | 297 | 62 | 331 | 9.82e-90 | 273 |
MS.gene62382.t1 | MTR_7g010950 | 46.524 | 187 | 78 | 5 | 8 | 191 | 94 | 261 | 1.70e-45 | 160 |
MS.gene62382.t1 | MTR_4g082060 | 48.045 | 179 | 72 | 5 | 11 | 188 | 85 | 243 | 1.29e-42 | 152 |
MS.gene62382.t1 | MTR_6g012450 | 39.344 | 244 | 119 | 6 | 7 | 230 | 96 | 330 | 2.73e-42 | 152 |
MS.gene62382.t1 | MTR_3g435480 | 37.729 | 273 | 130 | 9 | 8 | 279 | 105 | 338 | 1.81e-41 | 149 |
MS.gene62382.t1 | MTR_8g044220 | 35.808 | 229 | 99 | 6 | 4 | 228 | 84 | 268 | 7.75e-35 | 131 |
MS.gene62382.t1 | MTR_5g041420 | 52.252 | 111 | 44 | 2 | 7 | 111 | 99 | 206 | 2.28e-32 | 122 |
MS.gene62382.t1 | MTR_2g016030 | 74.194 | 62 | 16 | 0 | 41 | 102 | 39 | 100 | 2.02e-29 | 110 |
MS.gene62382.t1 | MTR_5g041530 | 51.429 | 105 | 48 | 1 | 6 | 110 | 100 | 201 | 1.34e-28 | 113 |
MS.gene62382.t1 | MTR_5g041380 | 45.802 | 131 | 64 | 3 | 5 | 133 | 88 | 213 | 1.27e-27 | 110 |
MS.gene62382.t1 | MTR_5g041400 | 54.444 | 90 | 35 | 2 | 13 | 102 | 89 | 172 | 6.83e-27 | 108 |
MS.gene62382.t1 | MTR_8g027295 | 63.492 | 63 | 23 | 0 | 44 | 106 | 19 | 81 | 6.34e-26 | 103 |
MS.gene62382.t1 | MTR_4g088580 | 46.667 | 105 | 46 | 2 | 8 | 104 | 8 | 110 | 8.36e-26 | 105 |
MS.gene62382.t1 | MTR_8g479350 | 50.000 | 88 | 44 | 0 | 49 | 136 | 68 | 155 | 1.76e-25 | 103 |
MS.gene62382.t1 | MTR_8g068210 | 48.936 | 94 | 35 | 2 | 11 | 104 | 7 | 87 | 2.11e-25 | 103 |
MS.gene62382.t1 | MTR_3g091820 | 59.155 | 71 | 29 | 0 | 33 | 103 | 27 | 97 | 2.54e-25 | 103 |
MS.gene62382.t1 | MTR_8g079060 | 50.000 | 86 | 43 | 0 | 49 | 134 | 29 | 114 | 7.25e-25 | 100 |
MS.gene62382.t1 | MTR_2g093220 | 55.844 | 77 | 33 | 1 | 28 | 103 | 18 | 94 | 7.36e-25 | 101 |
MS.gene62382.t1 | MTR_4g461080 | 57.143 | 77 | 32 | 1 | 26 | 101 | 5 | 81 | 7.50e-25 | 101 |
MS.gene62382.t1 | MTR_4g022370 | 62.903 | 62 | 23 | 0 | 42 | 103 | 75 | 136 | 8.62e-25 | 102 |
MS.gene62382.t1 | MTR_4g063780 | 48.387 | 93 | 43 | 1 | 42 | 134 | 68 | 155 | 2.26e-24 | 100 |
MS.gene62382.t1 | MTR_2g096740 | 47.475 | 99 | 51 | 1 | 36 | 134 | 64 | 161 | 2.40e-24 | 100 |
MS.gene62382.t1 | MTR_2g096740 | 47.475 | 99 | 51 | 1 | 36 | 134 | 49 | 146 | 2.63e-24 | 99.8 |
MS.gene62382.t1 | MTR_2g059540 | 75.510 | 49 | 12 | 0 | 49 | 97 | 31 | 79 | 3.66e-24 | 97.4 |
MS.gene62382.t1 | MTR_4g089095 | 50.505 | 99 | 33 | 2 | 21 | 104 | 7 | 104 | 5.14e-24 | 99.4 |
MS.gene62382.t1 | MTR_2g013370 | 70.690 | 58 | 16 | 1 | 47 | 104 | 44 | 100 | 1.34e-23 | 97.8 |
MS.gene62382.t1 | MTR_1g077600 | 50.000 | 80 | 35 | 1 | 27 | 101 | 16 | 95 | 1.72e-23 | 97.4 |
MS.gene62382.t1 | MTR_1g077600 | 50.000 | 80 | 35 | 1 | 27 | 101 | 16 | 95 | 1.92e-23 | 97.8 |
MS.gene62382.t1 | MTR_4g089095 | 73.214 | 56 | 14 | 1 | 49 | 104 | 16 | 70 | 1.94e-23 | 97.1 |
MS.gene62382.t1 | MTR_2g014060 | 59.375 | 64 | 26 | 0 | 37 | 100 | 13 | 76 | 4.15e-23 | 97.4 |
MS.gene62382.t1 | MTR_7g059400 | 55.556 | 72 | 30 | 1 | 34 | 103 | 59 | 130 | 5.10e-23 | 97.4 |
MS.gene62382.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 47 | 99 | 38 | 90 | 5.28e-23 | 97.1 |
MS.gene62382.t1 | MTR_8g015840 | 69.231 | 52 | 16 | 0 | 49 | 100 | 20 | 71 | 9.15e-23 | 94.0 |
MS.gene62382.t1 | MTR_7g024670 | 70.909 | 55 | 15 | 1 | 50 | 103 | 78 | 132 | 4.27e-22 | 95.1 |
MS.gene62382.t1 | MTR_3g090430 | 56.164 | 73 | 30 | 1 | 33 | 103 | 33 | 105 | 5.28e-22 | 94.4 |
MS.gene62382.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 45 | 99 | 39 | 93 | 6.20e-22 | 94.4 |
MS.gene62382.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 49 | 97 | 45 | 93 | 1.10e-21 | 93.2 |
MS.gene62382.t1 | MTR_3g077750 | 43.810 | 105 | 51 | 4 | 3 | 99 | 7 | 111 | 2.12e-21 | 92.8 |
MS.gene62382.t1 | MTR_1g056810 | 66.038 | 53 | 18 | 0 | 51 | 103 | 14 | 66 | 3.31e-21 | 91.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62382.t1 | AT3G47500 | 47.368 | 152 | 62 | 3 | 5 | 156 | 71 | 204 | 2.10e-38 | 140 |
MS.gene62382.t1 | AT5G39660 | 57.391 | 115 | 36 | 2 | 15 | 116 | 92 | 206 | 4.39e-38 | 140 |
MS.gene62382.t1 | AT5G39660 | 57.391 | 115 | 36 | 2 | 15 | 116 | 92 | 206 | 4.39e-38 | 140 |
MS.gene62382.t1 | AT5G39660 | 57.391 | 115 | 36 | 2 | 15 | 116 | 92 | 206 | 4.39e-38 | 140 |
MS.gene62382.t1 | AT1G26790 | 48.889 | 135 | 58 | 2 | 2 | 125 | 53 | 187 | 3.86e-36 | 133 |
MS.gene62382.t1 | AT5G62430 | 58.416 | 101 | 35 | 2 | 16 | 114 | 26 | 121 | 8.65e-35 | 128 |
MS.gene62382.t1 | AT2G34140 | 56.989 | 93 | 27 | 1 | 23 | 102 | 19 | 111 | 1.31e-33 | 121 |
MS.gene62382.t1 | AT1G69570 | 52.632 | 114 | 52 | 1 | 37 | 148 | 120 | 233 | 7.70e-33 | 125 |
MS.gene62382.t1 | AT1G29160 | 76.667 | 60 | 14 | 0 | 43 | 102 | 56 | 115 | 4.69e-31 | 114 |
MS.gene62382.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 45 | 114 | 72 | 141 | 2.29e-25 | 103 |
MS.gene62382.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 45 | 114 | 72 | 141 | 2.43e-25 | 103 |
MS.gene62382.t1 | AT3G55370 | 57.143 | 70 | 30 | 0 | 45 | 114 | 117 | 186 | 4.85e-25 | 103 |
MS.gene62382.t1 | AT5G60200 | 37.086 | 151 | 80 | 2 | 43 | 178 | 49 | 199 | 1.74e-24 | 99.8 |
MS.gene62382.t1 | AT2G28810 | 41.414 | 99 | 55 | 1 | 5 | 100 | 30 | 128 | 2.39e-24 | 100 |
MS.gene62382.t1 | AT2G28810 | 41.414 | 99 | 55 | 1 | 5 | 100 | 47 | 145 | 2.91e-24 | 100 |
MS.gene62382.t1 | AT3G21270 | 71.698 | 53 | 15 | 0 | 49 | 101 | 29 | 81 | 3.40e-24 | 97.8 |
MS.gene62382.t1 | AT5G60850 | 70.909 | 55 | 16 | 0 | 49 | 103 | 51 | 105 | 3.56e-24 | 100 |
MS.gene62382.t1 | AT1G51700 | 55.714 | 70 | 29 | 1 | 31 | 100 | 17 | 84 | 4.16e-24 | 97.1 |
MS.gene62382.t1 | AT4G24060 | 60.938 | 64 | 25 | 0 | 40 | 103 | 44 | 107 | 5.05e-24 | 100 |
MS.gene62382.t1 | AT3G61850 | 63.333 | 60 | 22 | 0 | 44 | 103 | 57 | 116 | 8.30e-24 | 98.6 |
MS.gene62382.t1 | AT3G61850 | 63.333 | 60 | 22 | 0 | 44 | 103 | 57 | 116 | 8.30e-24 | 98.6 |
MS.gene62382.t1 | AT2G37590 | 62.712 | 59 | 22 | 0 | 45 | 103 | 85 | 143 | 9.20e-24 | 99.4 |
MS.gene62382.t1 | AT3G61850 | 63.333 | 60 | 22 | 0 | 44 | 103 | 69 | 128 | 1.02e-23 | 98.6 |
MS.gene62382.t1 | AT1G28310 | 67.857 | 56 | 18 | 0 | 49 | 104 | 27 | 82 | 1.09e-23 | 98.6 |
MS.gene62382.t1 | AT1G28310 | 67.857 | 56 | 18 | 0 | 49 | 104 | 51 | 106 | 1.42e-23 | 99.0 |
MS.gene62382.t1 | AT3G61850 | 63.333 | 60 | 22 | 0 | 44 | 103 | 57 | 116 | 1.44e-23 | 98.6 |
MS.gene62382.t1 | AT3G61850 | 63.333 | 60 | 22 | 0 | 44 | 103 | 69 | 128 | 1.74e-23 | 98.6 |
MS.gene62382.t1 | AT3G45610 | 58.065 | 62 | 26 | 0 | 45 | 106 | 36 | 97 | 2.08e-23 | 96.7 |
MS.gene62382.t1 | AT5G65590 | 69.091 | 55 | 17 | 0 | 49 | 103 | 41 | 95 | 2.62e-23 | 97.8 |
MS.gene62382.t1 | AT1G07640 | 67.857 | 56 | 17 | 1 | 49 | 103 | 21 | 76 | 4.98e-23 | 96.3 |
MS.gene62382.t1 | AT3G50410 | 67.273 | 55 | 18 | 0 | 49 | 103 | 30 | 84 | 5.25e-23 | 95.5 |
MS.gene62382.t1 | AT1G07640 | 67.857 | 56 | 17 | 1 | 49 | 103 | 77 | 132 | 7.89e-23 | 96.7 |
MS.gene62382.t1 | AT5G66940 | 41.322 | 121 | 58 | 3 | 36 | 155 | 26 | 134 | 8.25e-23 | 94.4 |
MS.gene62382.t1 | AT4G00940 | 54.167 | 72 | 29 | 1 | 37 | 104 | 52 | 123 | 9.80e-23 | 95.9 |
MS.gene62382.t1 | AT4G00940 | 54.167 | 72 | 29 | 1 | 37 | 104 | 52 | 123 | 9.80e-23 | 95.9 |
MS.gene62382.t1 | AT4G00940 | 54.167 | 72 | 29 | 1 | 37 | 104 | 52 | 123 | 9.80e-23 | 95.9 |
MS.gene62382.t1 | AT1G07640 | 67.857 | 56 | 17 | 1 | 49 | 103 | 85 | 140 | 9.99e-23 | 96.7 |
MS.gene62382.t1 | AT5G02460 | 62.712 | 59 | 22 | 0 | 45 | 103 | 91 | 149 | 1.24e-22 | 97.1 |
MS.gene62382.t1 | AT1G64620 | 58.333 | 60 | 25 | 0 | 38 | 97 | 38 | 97 | 2.36e-22 | 95.9 |
MS.gene62382.t1 | AT2G28510 | 67.857 | 56 | 18 | 0 | 51 | 106 | 50 | 105 | 2.97e-22 | 94.4 |
MS.gene62382.t1 | AT4G38000 | 60.656 | 61 | 23 | 1 | 48 | 107 | 40 | 100 | 8.40e-22 | 92.4 |
MS.gene62382.t1 | AT4G21050 | 50.000 | 78 | 37 | 1 | 29 | 104 | 2 | 79 | 1.58e-21 | 90.5 |
MS.gene62382.t1 | AT3G52440 | 46.512 | 86 | 46 | 0 | 51 | 136 | 27 | 112 | 2.17e-21 | 91.3 |
MS.gene62382.t1 | AT3G52440 | 46.512 | 86 | 46 | 0 | 51 | 136 | 46 | 131 | 3.48e-21 | 90.9 |
MS.gene62382.t1 | AT5G62940 | 40.367 | 109 | 49 | 2 | 7 | 99 | 15 | 123 | 4.29e-21 | 92.4 |
MS.gene62382.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 44 | 96 | 63 | 115 | 9.14e-21 | 91.3 |
MS.gene62382.t1 | AT1G21340 | 68.000 | 50 | 16 | 0 | 51 | 100 | 40 | 89 | 1.05e-20 | 89.7 |
MS.gene62382.t1 | AT2G46590 | 62.264 | 53 | 20 | 0 | 44 | 96 | 75 | 127 | 1.11e-20 | 91.3 |
MS.gene62382.t1 | AT1G47655 | 65.306 | 49 | 17 | 0 | 49 | 97 | 29 | 77 | 1.44e-20 | 88.2 |
MS.gene62382.t1 | AT4G21040 | 56.140 | 57 | 25 | 0 | 51 | 107 | 27 | 83 | 5.98e-17 | 78.6 |
MS.gene62382.t1 | AT4G21080 | 54.386 | 57 | 26 | 0 | 51 | 107 | 27 | 83 | 1.56e-16 | 77.8 |
Find 53 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTTCTCTTGTGGTTTCT+AGG | 0.197262 | 6.4:+2174106 | None:intergenic |
AATGGCATTGTCCTAAAATT+TGG | 0.232669 | 6.4:-2174175 | MS.gene62382:CDS |
AATTTGTTCCTGAATCATTT+AGG | 0.243494 | 6.4:-2173787 | MS.gene62382:CDS |
GTTAATAATTGTAGAGAAAA+TGG | 0.253304 | 6.4:-2174073 | MS.gene62382:CDS |
GTCGGAAGTGTCATAGATAT+TGG | 0.311203 | 6.4:-2174372 | MS.gene62382:CDS |
TTCAGGTGCTCAAATAATAA+TGG | 0.321797 | 6.4:-2174193 | MS.gene62382:CDS |
ACATCGAATCGTTAGATTCA+TGG | 0.328881 | 6.4:+2174134 | None:intergenic |
GATCCATTCCTAAATGATTC+AGG | 0.331263 | 6.4:+2173779 | None:intergenic |
AAGCACTGTGGAAGATAATA+TGG | 0.348391 | 6.4:-2174527 | MS.gene62382:CDS |
TTGTTCAAGCTTTGATTCAA+TGG | 0.349711 | 6.4:+2173923 | None:intergenic |
ATGCAAATGTGTAACCCTTA+TGG | 0.378243 | 6.4:-2173875 | MS.gene62382:CDS |
AGGAATGGATCAGTTTCAAT+AGG | 0.385406 | 6.4:-2173767 | MS.gene62382:CDS |
TATCTGAATCCGAACATAAT+AGG | 0.400322 | 6.4:-2173988 | MS.gene62382:CDS |
CCTGAAAACCACAGCAGATT+CGG | 0.430545 | 6.4:+2174210 | None:intergenic |
GTCTGAAGATGTTCGGCATA+TGG | 0.438201 | 6.4:+2173825 | None:intergenic |
GAACTAGGATCAACGCCATA+AGG | 0.439532 | 6.4:+2173860 | None:intergenic |
AGAAACGTTCCTTTCGGTGC+AGG | 0.439748 | 6.4:-2174331 | MS.gene62382:CDS |
GACGTTACTTTCAGAATTTG+AGG | 0.441263 | 6.4:+2174240 | None:intergenic |
CTTGAACAATGTTCCTTCCA+TGG | 0.451475 | 6.4:-2173909 | MS.gene62382:CDS |
CGCCACATGATTGTAGCTTC+CGG | 0.453024 | 6.4:-2174274 | MS.gene62382:CDS |
AGAGCTACCCTGCATCTTCA+TGG | 0.465844 | 6.4:-2173952 | MS.gene62382:CDS |
GGACATTGAACAATCTTGTC+CGG | 0.468204 | 6.4:+2174466 | None:intergenic |
TTCCTTTCGGTGCAGGGAGA+CGG | 0.475764 | 6.4:-2174324 | MS.gene62382:CDS |
ATGTTCGGTCTGAAGATGTT+CGG | 0.485708 | 6.4:+2173818 | None:intergenic |
CATTGTCCTAAAATTTGGTC+CGG | 0.488780 | 6.4:-2174170 | MS.gene62382:CDS |
TGTGTATCTTCTGTGACAAA+TGG | 0.500907 | 6.4:-2174031 | MS.gene62382:CDS |
GGAATCATCCATGAAGATGC+AGG | 0.501713 | 6.4:+2173944 | None:intergenic |
AACGTTTCTCATTGTTCCAC+CGG | 0.503306 | 6.4:+2174345 | None:intergenic |
ACAATGAGAAACGTTCCTTT+CGG | 0.504607 | 6.4:-2174337 | MS.gene62382:CDS |
TTGCATCAATATTTCTCTTG+TGG | 0.508819 | 6.4:+2174098 | None:intergenic |
ACAAATTGCAAGCCAATGTT+CGG | 0.513658 | 6.4:+2173803 | None:intergenic |
GTTCCTGAATCATTTAGGAA+TGG | 0.513930 | 6.4:-2173782 | MS.gene62382:CDS |
TGGCACCACTGCATTGAACT+AGG | 0.522209 | 6.4:+2173845 | None:intergenic |
GTGTTGAAACTGTTGCATCT+TGG | 0.528822 | 6.4:+2174445 | None:intergenic |
GAAACGTTCCTTTCGGTGCA+GGG | 0.532355 | 6.4:-2174330 | MS.gene62382:CDS |
TGTCATAGATATTGGACTGC+CGG | 0.542196 | 6.4:-2174364 | MS.gene62382:CDS |
CTCTTCTACCGAATCTGCTG+TGG | 0.544865 | 6.4:-2174218 | MS.gene62382:CDS |
TTCCGTCTCCCTGCACCGAA+AGG | 0.555844 | 6.4:+2174322 | None:intergenic |
ATTGAAGATTGAACCATGGA+AGG | 0.561855 | 6.4:+2173896 | None:intergenic |
AACTAGGATCAACGCCATAA+GGG | 0.563985 | 6.4:+2173861 | None:intergenic |
TGTCACAGAAGATACACATA+AGG | 0.564721 | 6.4:+2174036 | None:intergenic |
AACATCTTCAGACCGAACAT+TGG | 0.582195 | 6.4:-2173815 | MS.gene62382:CDS |
TAGCTAGTAGTAGATGAAGA+AGG | 0.592040 | 6.4:+2173725 | None:intergenic |
ATTTGAGGTTGAAATTCCAC+CGG | 0.595342 | 6.4:+2174255 | None:intergenic |
GTGACAAATGGTTATACTCG+AGG | 0.618192 | 6.4:-2174019 | MS.gene62382:CDS |
CATAGATATTGGACTGCCGG+TGG | 0.627706 | 6.4:-2174361 | MS.gene62382:CDS |
GAATCATCCATGAAGATGCA+GGG | 0.636010 | 6.4:+2173945 | None:intergenic |
TTGATCCTAGTTCAATGCAG+TGG | 0.644085 | 6.4:-2173850 | MS.gene62382:CDS |
TTGCATTGAAGATTGAACCA+TGG | 0.644235 | 6.4:+2173892 | None:intergenic |
CACATGATTGTAGCTTCCGG+TGG | 0.649268 | 6.4:-2174271 | MS.gene62382:CDS |
ACTACAATGTCAGTCAACCT+CGG | 0.657312 | 6.4:-2174402 | MS.gene62382:CDS |
CACCGGAAGCTACAATCATG+TGG | 0.658948 | 6.4:+2174272 | None:intergenic |
AAAAGTTAACACAAGCACTG+TGG | 0.719835 | 6.4:-2174539 | MS.gene62382:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTAATAATTGTAGAGAAAA+TGG | - | chr6.4:2174249-2174268 | MS.gene62382:CDS | 20.0% |
!! | AATTTGTTCCTGAATCATTT+AGG | - | chr6.4:2174535-2174554 | MS.gene62382:CDS | 25.0% |
!!! | TAGTTTTGACCTATTATGTT+CGG | + | chr6.4:2174346-2174365 | None:intergenic | 25.0% |
!!! | TTCTCAATGTTTTGAATATG+AGG | + | chr6.4:2173730-2173749 | None:intergenic | 25.0% |
AATGGCATTGTCCTAAAATT+TGG | - | chr6.4:2174147-2174166 | MS.gene62382:CDS | 30.0% | |
ATATTTCTCTTGTGGTTTCT+AGG | + | chr6.4:2174219-2174238 | None:intergenic | 30.0% | |
TATCTGAATCCGAACATAAT+AGG | - | chr6.4:2174334-2174353 | MS.gene62382:CDS | 30.0% | |
TTCAGGTGCTCAAATAATAA+TGG | - | chr6.4:2174129-2174148 | MS.gene62382:CDS | 30.0% | |
TTGCATCAATATTTCTCTTG+TGG | + | chr6.4:2174227-2174246 | None:intergenic | 30.0% | |
! | TTGTTCAAGCTTTGATTCAA+TGG | + | chr6.4:2174402-2174421 | None:intergenic | 30.0% |
ACAAATTGCAAGCCAATGTT+CGG | + | chr6.4:2174522-2174541 | None:intergenic | 35.0% | |
ACAATGAGAAACGTTCCTTT+CGG | - | chr6.4:2173985-2174004 | MS.gene62382:CDS | 35.0% | |
ACATCGAATCGTTAGATTCA+TGG | + | chr6.4:2174191-2174210 | None:intergenic | 35.0% | |
AGACAAAGTCCTCAAAAAAC+CGG | - | chr6.4:2173837-2173856 | MS.gene62382:CDS | 35.0% | |
AGGAATGGATCAGTTTCAAT+AGG | - | chr6.4:2174555-2174574 | MS.gene62382:CDS | 35.0% | |
ATGCAAATGTGTAACCCTTA+TGG | - | chr6.4:2174447-2174466 | MS.gene62382:CDS | 35.0% | |
ATTGAAGATTGAACCATGGA+AGG | + | chr6.4:2174429-2174448 | None:intergenic | 35.0% | |
CATTGTCCTAAAATTTGGTC+CGG | - | chr6.4:2174152-2174171 | MS.gene62382:CDS | 35.0% | |
GATCCATTCCTAAATGATTC+AGG | + | chr6.4:2174546-2174565 | None:intergenic | 35.0% | |
GTTCCTGAATCATTTAGGAA+TGG | - | chr6.4:2174540-2174559 | MS.gene62382:CDS | 35.0% | |
TAGCTAGTAGTAGATGAAGA+AGG | + | chr6.4:2174600-2174619 | None:intergenic | 35.0% | |
TGTCACAGAAGATACACATA+AGG | + | chr6.4:2174289-2174308 | None:intergenic | 35.0% | |
TGTGTATCTTCTGTGACAAA+TGG | - | chr6.4:2174291-2174310 | MS.gene62382:CDS | 35.0% | |
TTGCATTGAAGATTGAACCA+TGG | + | chr6.4:2174433-2174452 | None:intergenic | 35.0% | |
! | AAAAGTTAACACAAGCACTG+TGG | - | chr6.4:2173783-2173802 | MS.gene62382:CDS | 35.0% |
! | AAGCACTGTGGAAGATAATA+TGG | - | chr6.4:2173795-2173814 | MS.gene62382:CDS | 35.0% |
! | ATTTGAGGTTGAAATTCCAC+CGG | + | chr6.4:2174070-2174089 | None:intergenic | 35.0% |
! | CATTTTCCGGACCAAATTTT+AGG | + | chr6.4:2174161-2174180 | None:intergenic | 35.0% |
! | GACGTTACTTTCAGAATTTG+AGG | + | chr6.4:2174085-2174104 | None:intergenic | 35.0% |
! | TCATGGAGAAATGCATTTTC+CGG | + | chr6.4:2174174-2174193 | None:intergenic | 35.0% |
AACATCTTCAGACCGAACAT+TGG | - | chr6.4:2174507-2174526 | MS.gene62382:CDS | 40.0% | |
AACGTTTCTCATTGTTCCAC+CGG | + | chr6.4:2173980-2173999 | None:intergenic | 40.0% | |
AACTAGGATCAACGCCATAA+GGG | + | chr6.4:2174464-2174483 | None:intergenic | 40.0% | |
ACTACAATGTCAGTCAACCT+CGG | - | chr6.4:2173920-2173939 | MS.gene62382:CDS | 40.0% | |
ATGTTCGGTCTGAAGATGTT+CGG | + | chr6.4:2174507-2174526 | None:intergenic | 40.0% | |
CTTGAACAATGTTCCTTCCA+TGG | - | chr6.4:2174413-2174432 | MS.gene62382:CDS | 40.0% | |
GAATCATCCATGAAGATGCA+GGG | + | chr6.4:2174380-2174399 | None:intergenic | 40.0% | |
GGACATTGAACAATCTTGTC+CGG | + | chr6.4:2173859-2173878 | None:intergenic | 40.0% | |
GTGACAAATGGTTATACTCG+AGG | - | chr6.4:2174303-2174322 | MS.gene62382:CDS | 40.0% | |
GTGTTGAAACTGTTGCATCT+TGG | + | chr6.4:2173880-2173899 | None:intergenic | 40.0% | |
TGTCATAGATATTGGACTGC+CGG | - | chr6.4:2173958-2173977 | MS.gene62382:CDS | 40.0% | |
TTGATCCTAGTTCAATGCAG+TGG | - | chr6.4:2174472-2174491 | MS.gene62382:CDS | 40.0% | |
!! | GTCGGAAGTGTCATAGATAT+TGG | - | chr6.4:2173950-2173969 | MS.gene62382:CDS | 40.0% |
!!! | CAATCTTGTCCGGTTTTTTG+AGG | + | chr6.4:2173849-2173868 | None:intergenic | 40.0% |
CCTGAAAACCACAGCAGATT+CGG | + | chr6.4:2174115-2174134 | None:intergenic | 45.0% | |
GAACTAGGATCAACGCCATA+AGG | + | chr6.4:2174465-2174484 | None:intergenic | 45.0% | |
GGAATCATCCATGAAGATGC+AGG | + | chr6.4:2174381-2174400 | None:intergenic | 45.0% | |
GTCTGAAGATGTTCGGCATA+TGG | + | chr6.4:2174500-2174519 | None:intergenic | 45.0% | |
! | GTCAACCTCGGCATTTTTGT+CGG | - | chr6.4:2173932-2173951 | MS.gene62382:CDS | 45.0% |
AGAGCTACCCTGCATCTTCA+TGG | - | chr6.4:2174370-2174389 | MS.gene62382:CDS | 50.0% | |
CACATGATTGTAGCTTCCGG+TGG | - | chr6.4:2174051-2174070 | MS.gene62382:CDS | 50.0% | |
CACCGGAAGCTACAATCATG+TGG | + | chr6.4:2174053-2174072 | None:intergenic | 50.0% | |
CACTTCCGACAAAAATGCCG+AGG | + | chr6.4:2173940-2173959 | None:intergenic | 50.0% | |
CATAGATATTGGACTGCCGG+TGG | - | chr6.4:2173961-2173980 | MS.gene62382:CDS | 50.0% | |
CGCCACATGATTGTAGCTTC+CGG | - | chr6.4:2174048-2174067 | MS.gene62382:CDS | 50.0% | |
CTCTTCTACCGAATCTGCTG+TGG | - | chr6.4:2174104-2174123 | MS.gene62382:CDS | 50.0% | |
TGGCACCACTGCATTGAACT+AGG | + | chr6.4:2174480-2174499 | None:intergenic | 50.0% | |
! | AGAAACGTTCCTTTCGGTGC+AGG | - | chr6.4:2173991-2174010 | MS.gene62382:CDS | 50.0% |
! | CCGAATCTGCTGTGGTTTTC+AGG | - | chr6.4:2174112-2174131 | MS.gene62382:CDS | 50.0% |
! | GAAACGTTCCTTTCGGTGCA+GGG | - | chr6.4:2173992-2174011 | MS.gene62382:CDS | 50.0% |
! | TTCCTTTCGGTGCAGGGAGA+CGG | - | chr6.4:2173998-2174017 | MS.gene62382:CDS | 55.0% |
TTCCGTCTCCCTGCACCGAA+AGG | + | chr6.4:2174003-2174022 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 2173724 | 2174620 | 2173724 | ID=MS.gene62382 |
chr6.4 | mRNA | 2173724 | 2174620 | 2173724 | ID=MS.gene62382.t1;Parent=MS.gene62382 |
chr6.4 | exon | 2173724 | 2174620 | 2173724 | ID=MS.gene62382.t1.exon1;Parent=MS.gene62382.t1 |
chr6.4 | CDS | 2173724 | 2174620 | 2173724 | ID=cds.MS.gene62382.t1;Parent=MS.gene62382.t1 |
Gene Sequence |
Protein sequence |