AlfalfaGEDB | MS.gene62382

M. sativa cultivar XinJiangDaYe / MS.gene62382

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62382.t1	XP_013451513.1	77.7	305	61	1	1	298	48	352	5.80E-125	457.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62382.t1	Q93ZL5	69.7	89	24	2	30	115	117	205	1.3e-29	131.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62382.t1	A0A072U836	77.7	305	61	1	1	298	48	352	4.2e-125	457.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62382.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62382.t1	MTR_6g027450	90.268	298	20	2	1	298	41	329	0.0	543
MS.gene62382.t1	MTR_6g027460	77.551	294	59	1	1	287	48	341	8.02e-165	462
MS.gene62382.t1	MTR_7g086780	53.448	290	113	7	10	297	62	331	9.82e-90	273
MS.gene62382.t1	MTR_7g010950	46.524	187	78	5	8	191	94	261	1.70e-45	160
MS.gene62382.t1	MTR_4g082060	48.045	179	72	5	11	188	85	243	1.29e-42	152
MS.gene62382.t1	MTR_6g012450	39.344	244	119	6	7	230	96	330	2.73e-42	152
MS.gene62382.t1	MTR_3g435480	37.729	273	130	9	8	279	105	338	1.81e-41	149
MS.gene62382.t1	MTR_8g044220	35.808	229	99	6	4	228	84	268	7.75e-35	131
MS.gene62382.t1	MTR_5g041420	52.252	111	44	2	7	111	99	206	2.28e-32	122
MS.gene62382.t1	MTR_2g016030	74.194	62	16	0	41	102	39	100	2.02e-29	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62382.t1	AT3G47500	47.368	152	62	3	5	156	71	204	2.10e-38	140
MS.gene62382.t1	AT5G39660	57.391	115	36	2	15	116	92	206	4.39e-38	140
MS.gene62382.t1	AT5G39660	57.391	115	36	2	15	116	92	206	4.39e-38	140
MS.gene62382.t1	AT5G39660	57.391	115	36	2	15	116	92	206	4.39e-38	140
MS.gene62382.t1	AT1G26790	48.889	135	58	2	2	125	53	187	3.86e-36	133
MS.gene62382.t1	AT5G62430	58.416	101	35	2	16	114	26	121	8.65e-35	128
MS.gene62382.t1	AT2G34140	56.989	93	27	1	23	102	19	111	1.31e-33	121
MS.gene62382.t1	AT1G69570	52.632	114	52	1	37	148	120	233	7.70e-33	125
MS.gene62382.t1	AT1G29160	76.667	60	14	0	43	102	56	115	4.69e-31	114
MS.gene62382.t1	AT3G55370	57.143	70	30	0	45	114	72	141	2.29e-25	103

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Find 53 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTAACACAAGCACTG+TGG	0.719835	6.4:-2174539	MS.gene62382:CDS
AACATCTTCAGACCGAACAT+TGG	0.582195	6.4:-2173815	MS.gene62382:CDS
AACGTTTCTCATTGTTCCAC+CGG	0.503306	6.4:+2174345	None:intergenic
AACTAGGATCAACGCCATAA+GGG	0.563985	6.4:+2173861	None:intergenic
AAGCACTGTGGAAGATAATA+TGG	0.348391	6.4:-2174527	MS.gene62382:CDS
AATGGCATTGTCCTAAAATT+TGG	0.232669	6.4:-2174175	MS.gene62382:CDS
AATTTGTTCCTGAATCATTT+AGG	0.243494	6.4:-2173787	MS.gene62382:CDS
ACAAATTGCAAGCCAATGTT+CGG	0.513658	6.4:+2173803	None:intergenic
ACAATGAGAAACGTTCCTTT+CGG	0.504607	6.4:-2174337	MS.gene62382:CDS
ACATCGAATCGTTAGATTCA+TGG	0.328881	6.4:+2174134	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGCATTGTCCTAAAATT+TGG	-	chr6.4:2174147-2174166	MS.gene62382:CDS	30.0%
ATATTTCTCTTGTGGTTTCT+AGG	+	chr6.4:2174219-2174238	None:intergenic	30.0%
TATCTGAATCCGAACATAAT+AGG	-	chr6.4:2174334-2174353	MS.gene62382:CDS	30.0%
TTCAGGTGCTCAAATAATAA+TGG	-	chr6.4:2174129-2174148	MS.gene62382:CDS	30.0%
TTGCATCAATATTTCTCTTG+TGG	+	chr6.4:2174227-2174246	None:intergenic	30.0%
ACAAATTGCAAGCCAATGTT+CGG	+	chr6.4:2174522-2174541	None:intergenic	35.0%
ACAATGAGAAACGTTCCTTT+CGG	-	chr6.4:2173985-2174004	MS.gene62382:CDS	35.0%
ACATCGAATCGTTAGATTCA+TGG	+	chr6.4:2174191-2174210	None:intergenic	35.0%
AGACAAAGTCCTCAAAAAAC+CGG	-	chr6.4:2173837-2173856	MS.gene62382:CDS	35.0%
AGGAATGGATCAGTTTCAAT+AGG	-	chr6.4:2174555-2174574	MS.gene62382:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	2173724	2174620	2173724	ID=MS.gene62382
chr6.4	mRNA	2173724	2174620	2173724	ID=MS.gene62382.t1;Parent=MS.gene62382
chr6.4	exon	2173724	2174620	2173724	ID=MS.gene62382.t1.exon1;Parent=MS.gene62382.t1
chr6.4	CDS	2173724	2174620	2173724	ID=cds.MS.gene62382.t1;Parent=MS.gene62382.t1

Gene Sequence

>MS.gene62382

ATGCCTCATATTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTAACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTCAAAAAACCGGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCAACACGAAATTTTGTTATTTCAATAACTACAATGTCAGTCAACCTCGGCATTTTTGTCGGAAGTGTCATAGATATTGGACTGCCGGTGGAACAATGAGAAACGTTCCTTTCGGTGCAGGGAGACGGAAGAACAAGCAGATAGCTTCTCAATATCGCCACATGATTGTAGCTTCCGGTGGAATTTCAACCTCAAATTCTGAAAGTAACGTCTCTTCTACCGAATCTGCTGTGGTTTTCAGGTGCTCAAATAATAATGGCATTGTCCTAAAATTTGGTCCGGAAAATGCATTTCTCCATGAATCTAACGATTCGATGTTTAATCCTAGAAACCACAAGAGAAATATTGATGCAAGTGTTAATAATTGTAGAGAAAATGGAGATGAAGAATCATCCTTATGTGTATCTTCTGTGACAAATGGTTATACTCGAGGAAACGAGTTATCTGAATCCGAACATAATAGGTCAAAACTATTGCAGAGCTACCCTGCATCTTCATGGATGATTCCATTGAATCAAAGCTTGAACAATGTTCCTTCCATGGTTCAATCTTCAATGCAAATGTGTAACCCTTATGGCGTTGATCCTAGTTCAATGCAGTGGTGCCATATGCCGAACATCTTCAGACCGAACATTGGCTTGCAATTTGTTCCTGAATCATTTAGGAATGGATCAGTTTCAATAGGTTCAAATAATTGTTTTTCGCCTTCTTCATCTACTACTAGCTAG

Protein sequence

>MS.gene62382.t1

MPHIQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCNSFNTKFCYFNNYNVSQPRHFCRKCHRYWTAGGTMRNVPFGAGRRKNKQIASQYRHMIVASGGISTSNSESNVSSTESAVVFRCSNNNGIVLKFGPENAFLHESNDSMFNPRNHKRNIDASVNNCRENGDEESSLCVSSVTNGYTRGNELSESEHNRSKLLQSYPASSWMIPLNQSLNNVPSMVQSSMQMCNPYGVDPSSMQWCHMPNIFRPNIGLQFVPESFRNGSVSIGSNNCFSPSSSTTS