AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62444

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62444.t1 MTR_4g113940 78.229 271 51 2 1 264 1 270 1.62e-156 436
MS.gene62444.t1 MTR_4g113890 71.587 271 28 3 1 263 1 230 3.02e-124 353
MS.gene62444.t1 MTR_4g113860 47.403 308 117 6 1 264 1 307 8.51e-89 266
MS.gene62444.t1 MTR_4g113970 54.032 248 72 7 1 208 1 246 9.86e-78 236
MS.gene62444.t1 MTR_3g050390 46.250 240 97 8 31 264 15 228 2.09e-59 189
MS.gene62444.t1 MTR_8g066730 25.648 347 152 9 16 264 36 374 1.95e-26 106
MS.gene62444.t1 MTR_8g066730 27.843 255 113 6 16 207 36 282 1.68e-21 91.7
MS.gene62444.t1 MTR_3g466460 47.059 85 15 1 210 264 10 94 2.30e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62444.t1 AT3G19360 38.926 298 113 10 31 264 81 373 3.03e-50 169
MS.gene62444.t1 AT3G19360 38.926 298 113 10 31 264 81 373 3.03e-50 169
MS.gene62444.t1 AT1G32360 26.351 296 130 8 54 264 90 382 6.00e-24 99.8

Find 72 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATTGAAACTAATAATT+TGG 0.147683 8.2:-14408537 MS.gene62444:CDS
CCAACTAGCTTCTGCGAATT+TGG 0.173447 8.2:+14408752 None:intergenic
AGCCAGATCAATCGAATTTA+CGG 0.290260 8.2:-14406919 MS.gene62444:CDS
TCAATCGAATTTACGGTGAT+TGG 0.313071 8.2:-14406912 MS.gene62444:CDS
ATGAAGATCCTGCACAGTTT+AGG 0.341189 8.2:-14408598 MS.gene62444:CDS
CCAACTAAGAAGCGTATACT+TGG 0.350951 8.2:-14406952 MS.gene62444:CDS
TTCCAAATTATTAGTTTCAA+TGG 0.356757 8.2:+14408535 None:intergenic
ATTTGTACTAAGTTCAGATT+TGG 0.359410 8.2:-14408839 MS.gene62444:CDS
GAAGCACTCTCTTGATTTCA+AGG 0.359778 8.2:+14408565 None:intergenic
ATCGGCTGCAGCTGGAAAAT+CGG 0.361010 8.2:-14408715 MS.gene62444:CDS
TGAACAACAATGACTTCAAA+AGG 0.386314 8.2:-14408958 MS.gene62444:CDS
TGCTATGGCAACTGCAGCTT+CGG 0.389652 8.2:+14406990 None:intergenic
AAATCAGAGTTACAAGTTCC+TGG 0.400098 8.2:-14407051 MS.gene62444:intron
CGACTAAACTGTGTAGCAAT+TGG 0.417026 8.2:-14408469 MS.gene62444:CDS
AGATTTGGTGCTTGTAGAAA+CGG 0.437088 8.2:-14408824 MS.gene62444:CDS
AACTGCAGCATCAGCTTCAA+TGG 0.437500 8.2:+14407023 None:intergenic
AACTGCAGCTTCGGCTTCAA+TGG 0.440184 8.2:+14406999 None:intergenic
TTAGAGGTTGGAATATCATA+TGG 0.441570 8.2:+14409007 None:intergenic
TTGCGGCGGTGACATCTTAG+AGG 0.444480 8.2:+14408991 None:intergenic
CTGGTGCTCTTCCTTTGCTA+TGG 0.445302 8.2:+14406975 None:intergenic
CCAAGTATACGCTTCTTAGT+TGG 0.448187 8.2:+14406952 None:intergenic
TAACGATGATCGGCTGCAGC+TGG 0.448905 8.2:-14408723 MS.gene62444:CDS
AGCAAGCAAGGGGCACTTAT+CGG 0.455209 8.2:-14408493 MS.gene62444:CDS
CACCGTAAATTCGATTGATC+TGG 0.457971 8.2:+14406917 None:intergenic
TGTGCAAGCATTATTGCAAT+GGG 0.460308 8.2:-14408658 MS.gene62444:CDS
TCGGCTGCAGCTGGAAAATC+GGG 0.462737 8.2:-14408714 MS.gene62444:CDS
CTCTTTGCTCATGGTGAAGA+AGG 0.463092 8.2:-14408410 MS.gene62444:intron
CTGATCTGTTTGATTGAGGA+AGG 0.475163 8.2:+14408885 None:intergenic
AATATACACTTATCTCCATA+TGG 0.477192 8.2:+14408626 None:intergenic
GAGACAGGATATTGTTCCTA+TGG 0.480467 8.2:-14408443 MS.gene62444:CDS
CTCATGGAGCTGAAGAGATA+AGG 0.489689 8.2:-14408784 MS.gene62444:CDS
AATAATTGCAACTTTGCTCA+TGG 0.494959 8.2:-14408800 MS.gene62444:CDS
GATTGAGGAAGGGTCATCCT+TGG 0.496966 8.2:+14408896 None:intergenic
CTTGGAGGAGGGCATATCAA+TGG 0.505795 8.2:+14408914 None:intergenic
AGCTTCTGCGAATTTGGTGG+TGG 0.508361 8.2:+14408758 None:intergenic
GGAATGTGAACAAGCAAGCA+AGG 0.508839 8.2:-14408505 MS.gene62444:CDS
CTAATAATTTGGAAGGCAGC+AGG 0.521839 8.2:-14408526 MS.gene62444:CDS
GTATACGCTTCTTAGTTGGC+TGG 0.524014 8.2:+14406956 None:intergenic
AGGAGGGCATATCAATGGAT+TGG 0.527979 8.2:+14408919 None:intergenic
CCAAATTCGCAGAAGCTAGT+TGG 0.528628 8.2:-14408752 MS.gene62444:CDS
GGAAGGGTCATCCTTGGAGG+AGG 0.531078 8.2:+14408902 None:intergenic
TATTCATTCCTAAACTGTGC+AGG 0.531321 8.2:+14408590 None:intergenic
CTGTGCAAGCATTATTGCAA+TGG 0.534714 8.2:-14408659 MS.gene62444:CDS
TGTAGCAATTGGAAGGAGAC+AGG 0.535109 8.2:-14408458 MS.gene62444:CDS
ACTAGCTTCTGCGAATTTGG+TGG 0.541605 8.2:+14408755 None:intergenic
ATTGAAACTAATAATTTGGA+AGG 0.547647 8.2:-14408533 MS.gene62444:CDS
GAACAACAATGACTTCAAAA+GGG 0.550138 8.2:-14408957 MS.gene62444:CDS
AAAGAGACAGTTCTTTCCAT+AGG 0.554060 8.2:+14408427 None:intergenic
TGAGGAAGGGTCATCCTTGG+AGG 0.556539 8.2:+14408899 None:intergenic
CATTGATATGCCCTCCTCCA+AGG 0.556864 8.2:-14408913 MS.gene62444:CDS
GGCGGTGACATCTTAGAGGT+TGG 0.560713 8.2:+14408995 None:intergenic
TTGGTCCGTGTAACGATGAT+CGG 0.560743 8.2:-14408733 MS.gene62444:CDS
AACAATGACTTCAAAAGGGA+AGG 0.561307 8.2:-14408953 MS.gene62444:CDS
TGGTCTGATCTGTTTGATTG+AGG 0.566957 8.2:+14408881 None:intergenic
AAGAACTGTCTCTTTGCTCA+TGG 0.580294 8.2:-14408419 MS.gene62444:CDS
AATGGGGAGGAATGTCCATA+TGG 0.583975 8.2:-14408641 MS.gene62444:CDS
TCAGCTTCAATGGCTCCACC+AGG 0.589035 8.2:+14407033 None:intergenic
GAATGTGAACAAGCAAGCAA+GGG 0.597583 8.2:-14408504 MS.gene62444:CDS
AGCTGCAGTTGCCATAGCAA+AGG 0.598992 8.2:-14406986 MS.gene62444:CDS
ACTGTGCAGGATCTTCATGA+AGG 0.599205 8.2:+14408603 None:intergenic
TAAACTGTGTAGCAATTGGA+AGG 0.615830 8.2:-14408465 MS.gene62444:CDS
TGATCTGTTTGATTGAGGAA+GGG 0.618914 8.2:+14408886 None:intergenic
GAAGGGTCATCCTTGGAGGA+GGG 0.622595 8.2:+14408903 None:intergenic
AATATCATATGGAAAAGCCA+TGG 0.637338 8.2:+14409018 None:intergenic
CAACTAAGAAGCGTATACTT+GGG 0.638379 8.2:-14406951 MS.gene62444:CDS
TTGTTCAATGAAGTGAATTG+CGG 0.641834 8.2:+14408974 None:intergenic
AATGTGAACAAGCAAGCAAG+GGG 0.656040 8.2:-14408503 MS.gene62444:CDS
TTCAATGAAGTGAATTGCGG+CGG 0.657596 8.2:+14408977 None:intergenic
CAAGCATTATTGCAATGGGG+AGG 0.662472 8.2:-14408654 MS.gene62444:CDS
TGCAGCCGATCATCGTTACA+CGG 0.666217 8.2:+14408728 None:intergenic
TCAGAGTTACAAGTTCCTGG+TGG 0.718686 8.2:-14407048 MS.gene62444:intron
GTGCAAGCATTATTGCAATG+GGG 0.746686 8.2:-14408657 MS.gene62444:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAAAAATCATACAA+AGG - chr8.2:14407228-14407247 MS.gene62444:intron 15.0%
!! TATACTTTGATTATTTGTTT+CGG - chr8.2:14407538-14407557 MS.gene62444:intron 15.0%
!!! CAAGAGTTTTTTTAAATATA+AGG + chr8.2:14408713-14408732 None:intergenic 15.0%
!! AACCATTGAAACTAATAATT+TGG - chr8.2:14407379-14407398 MS.gene62444:intron 20.0%
!! ATTGAAACTAATAATTTGGA+AGG - chr8.2:14407383-14407402 MS.gene62444:intron 20.0%
!!! GTTTTGTACTAAATAAAGTT+TGG - chr8.2:14408169-14408188 MS.gene62444:intron 20.0%
!!! TTCCAAATTATTAGTTTCAA+TGG + chr8.2:14407384-14407403 None:intergenic 20.0%
! AAAAATCTGGCATATAAACA+TGG + chr8.2:14408001-14408020 None:intergenic 25.0%
! AAGTTATCATAAGCAAAATG+CGG + chr8.2:14408040-14408059 None:intergenic 25.0%
! AATATACACTTATCTCCATA+TGG + chr8.2:14407293-14407312 None:intergenic 25.0%
! AATGATCCATTAGAATAAAG+AGG + chr8.2:14408344-14408363 None:intergenic 25.0%
! AATGGATCATTACTATTGTA+TGG - chr8.2:14408353-14408372 MS.gene62444:intron 25.0%
! ATCAAATTTCTGCCATAAAT+GGG - chr8.2:14407896-14407915 MS.gene62444:intron 25.0%
! ATGATCCATTAGAATAAAGA+GGG + chr8.2:14408343-14408362 None:intergenic 25.0%
! ATTTGTACTAAGTTCAGATT+TGG - chr8.2:14407077-14407096 MS.gene62444:intron 25.0%
! TATAAAAATTCCTGACAATG+CGG + chr8.2:14408278-14408297 None:intergenic 25.0%
! TATCAAATTTCTGCCATAAA+TGG - chr8.2:14407895-14407914 MS.gene62444:intron 25.0%
! TCTTAACAAATGTAAAACTG+TGG + chr8.2:14408403-14408422 None:intergenic 25.0%
! TGATCATTAATCATACATGA+AGG + chr8.2:14407861-14407880 None:intergenic 25.0%
! TGTACTAAATAAAGTTTGGT+GGG - chr8.2:14408173-14408192 MS.gene62444:intron 25.0%
! TTGTACTAAATAAAGTTTGG+TGG - chr8.2:14408172-14408191 MS.gene62444:intron 25.0%
!! ACTTTAAGAAGAAACAAAGT+TGG + chr8.2:14408498-14408517 None:intergenic 25.0%
!! TGACATGAACAATAATTTTG+AGG - chr8.2:14408550-14408569 MS.gene62444:CDS 25.0%
!!! TACTAGAATTTGTTGTAGTT+TGG - chr8.2:14408423-14408442 MS.gene62444:CDS 25.0%
AATAATTGCAACTTTGCTCA+TGG - chr8.2:14407116-14407135 MS.gene62444:intron 30.0%
ATGTCAGACATCAAATTTGT+AGG + chr8.2:14408536-14408555 None:intergenic 30.0%
GAACAACAATGACTTCAAAA+GGG - chr8.2:14406959-14406978 MS.gene62444:CDS 30.0%
GATGAACATAATACAATAGC+TGG + chr8.2:14408471-14408490 None:intergenic 30.0%
TGAACAACAATGACTTCAAA+AGG - chr8.2:14406958-14406977 MS.gene62444:CDS 30.0%
TGATCCATTAGAATAAAGAG+GGG + chr8.2:14408342-14408361 None:intergenic 30.0%
TGCAAATTACAGTGTTTGAA+TGG - chr8.2:14407657-14407676 MS.gene62444:intron 30.0%
TGTGTATGATGTTTCATGTT+TGG - chr8.2:14407709-14407728 MS.gene62444:intron 30.0%
TTAAAACAACTGCAACTGTT+TGG - chr8.2:14408797-14408816 MS.gene62444:CDS 30.0%
TTAGAGGTTGGAATATCATA+TGG + chr8.2:14406912-14406931 None:intergenic 30.0%
TTGTTCAATGAAGTGAATTG+CGG + chr8.2:14406945-14406964 None:intergenic 30.0%
! AGGTACATTTTTGCAAGATA+AGG + chr8.2:14407774-14407793 None:intergenic 30.0%
! ATGATTCCATCCTTGTTTAT+AGG - chr8.2:14407815-14407834 MS.gene62444:intron 30.0%
! ATGGCAGAAATTTGATAACA+AGG + chr8.2:14407892-14407911 None:intergenic 30.0%
! ATGTAAGTGCTGTTAAATAG+CGG + chr8.2:14408221-14408240 None:intergenic 30.0%
! ATTTTCCATTCAGAACCTTA+GGG + chr8.2:14407797-14407816 None:intergenic 30.0%
! ATTTTTGCAAGATAAGGCAA+TGG + chr8.2:14407768-14407787 None:intergenic 30.0%
! GTACTAAATAAAGTTTGGTG+GGG - chr8.2:14408174-14408193 MS.gene62444:intron 30.0%
! TTCGTGTTTTGTAGAAAATG+TGG + chr8.2:14407058-14407077 None:intergenic 30.0%
! TTTTTGCAAGATAAGGCAAT+GGG + chr8.2:14407767-14407786 None:intergenic 30.0%
AAAGAGACAGTTCTTTCCAT+AGG + chr8.2:14407492-14407511 None:intergenic 35.0%
AAATCAGAGTTACAAGTTCC+TGG - chr8.2:14408865-14408884 MS.gene62444:CDS 35.0%
AACAATGACTTCAAAAGGGA+AGG - chr8.2:14406963-14406982 MS.gene62444:CDS 35.0%
AGCCAGATCAATCGAATTTA+CGG - chr8.2:14408997-14409016 MS.gene62444:CDS 35.0%
AGGAGTCAGAACAATATACA+TGG + chr8.2:14408826-14408845 None:intergenic 35.0%
ATAGTCTATACCATGATACC+CGG - chr8.2:14407950-14407969 MS.gene62444:intron 35.0%
CATATTTGACCCCAATATTG+AGG + chr8.2:14408621-14408640 None:intergenic 35.0%
CTCAATATTGGGGTCAAATA+TGG - chr8.2:14408619-14408638 MS.gene62444:CDS 35.0%
GATCCATTAGAATAAAGAGG+GGG + chr8.2:14408341-14408360 None:intergenic 35.0%
TAAACTGTGTAGCAATTGGA+AGG - chr8.2:14407451-14407470 MS.gene62444:intron 35.0%
TAACCCCCTCTTTATTCTAA+TGG - chr8.2:14408335-14408354 MS.gene62444:intron 35.0%
TATTCATTCCTAAACTGTGC+AGG + chr8.2:14407329-14407348 None:intergenic 35.0%
TCAATCGAATTTACGGTGAT+TGG - chr8.2:14409004-14409023 MS.gene62444:CDS 35.0%
TCTATAGCACTATTGCAGAA+CGG + chr8.2:14408130-14408149 None:intergenic 35.0%
TGATCTGTTTGATTGAGGAA+GGG + chr8.2:14407033-14407052 None:intergenic 35.0%
TGTGCAAGCATTATTGCAAT+GGG - chr8.2:14407258-14407277 MS.gene62444:intron 35.0%
! AAAATGCGGATTAAGGTATC+TGG + chr8.2:14408026-14408045 None:intergenic 35.0%
! ATGTTGTTAATTGCTGTTCG+CGG - chr8.2:14408082-14408101 MS.gene62444:intron 35.0%
! CAACTAAGAAGCGTATACTT+GGG - chr8.2:14408965-14408984 MS.gene62444:CDS 35.0%
! CATAAGCAAAATGCGGATTA+AGG + chr8.2:14408033-14408052 None:intergenic 35.0%
! CATTTTCCATTCAGAACCTT+AGG + chr8.2:14407798-14407817 None:intergenic 35.0%
! TGTAAGTGCTGTTAAATAGC+GGG + chr8.2:14408220-14408239 None:intergenic 35.0%
!! AGATTTGGTGCTTGTAGAAA+CGG - chr8.2:14407092-14407111 MS.gene62444:intron 35.0%
AAGAACTGTCTCTTTGCTCA+TGG - chr8.2:14407497-14407516 MS.gene62444:intron 40.0%
AATGTGAACAAGCAAGCAAG+GGG - chr8.2:14407413-14407432 MS.gene62444:intron 40.0%
ACCTGCTATGCCTATAAACA+AGG + chr8.2:14407828-14407847 None:intergenic 40.0%
ATGAAGATCCTGCACAGTTT+AGG - chr8.2:14407318-14407337 MS.gene62444:intron 40.0%
ATGCCGTGATCCTCAATATT+GGG - chr8.2:14408608-14408627 MS.gene62444:CDS 40.0%
CACCGTAAATTCGATTGATC+TGG + chr8.2:14409002-14409021 None:intergenic 40.0%
CCAAGTATACGCTTCTTAGT+TGG + chr8.2:14408967-14408986 None:intergenic 40.0%
CGACTAAACTGTGTAGCAAT+TGG - chr8.2:14407447-14407466 MS.gene62444:intron 40.0%
CTAATAATTTGGAAGGCAGC+AGG - chr8.2:14407390-14407409 MS.gene62444:intron 40.0%
CTGATCTGTTTGATTGAGGA+AGG + chr8.2:14407034-14407053 None:intergenic 40.0%
CTGTGCAAGCATTATTGCAA+TGG - chr8.2:14407257-14407276 MS.gene62444:intron 40.0%
GAATGTGAACAAGCAAGCAA+GGG - chr8.2:14407412-14407431 MS.gene62444:intron 40.0%
GAGACAGGATATTGTTCCTA+TGG - chr8.2:14407473-14407492 MS.gene62444:intron 40.0%
GCTATGCCTATAAACAAGGA+TGG + chr8.2:14407824-14407843 None:intergenic 40.0%
GTGCAAGCATTATTGCAATG+GGG - chr8.2:14407259-14407278 MS.gene62444:intron 40.0%
TGCAAAAATGTACCTCCCTA+AGG - chr8.2:14407779-14407798 MS.gene62444:intron 40.0%
TGGTCTGATCTGTTTGATTG+AGG + chr8.2:14407038-14407057 None:intergenic 40.0%
TGTTCTGACTCCTGAAGTAT+CGG - chr8.2:14408833-14408852 MS.gene62444:CDS 40.0%
TTCAATGAAGTGAATTGCGG+CGG + chr8.2:14406942-14406961 None:intergenic 40.0%
! AAGGTATCTGGCGAAAAATC+TGG + chr8.2:14408014-14408033 None:intergenic 40.0%
! CCAACTAAGAAGCGTATACT+TGG - chr8.2:14408964-14408983 MS.gene62444:CDS 40.0%
! GAAGCACTCTCTTGATTTCA+AGG + chr8.2:14407354-14407373 None:intergenic 40.0%
! TCCTTGTTTATAGGCATAGC+AGG - chr8.2:14407824-14407843 MS.gene62444:intron 40.0%
AACTGCAGCATCAGCTTCAA+TGG + chr8.2:14408896-14408915 None:intergenic 45.0%
AAGGCAATGGGACAACAAGT+AGG + chr8.2:14407755-14407774 None:intergenic 45.0%
AATGGGGAGGAATGTCCATA+TGG - chr8.2:14407275-14407294 MS.gene62444:intron 45.0%
ACTGTGCAGGATCTTCATGA+AGG + chr8.2:14407316-14407335 None:intergenic 45.0%
ATTCCTGACAATGCGGTTGA+TGG + chr8.2:14408271-14408290 None:intergenic 45.0%
CAAGCATTATTGCAATGGGG+AGG - chr8.2:14407262-14407281 MS.gene62444:intron 45.0%
CAATATTGAGGATCACGGCA+TGG + chr8.2:14408609-14408628 None:intergenic 45.0%
CATGCCGTGATCCTCAATAT+TGG - chr8.2:14408607-14408626 MS.gene62444:CDS 45.0%
CCAAATTCGCAGAAGCTAGT+TGG - chr8.2:14407164-14407183 MS.gene62444:intron 45.0%
CTCATGGAGCTGAAGAGATA+AGG - chr8.2:14407132-14407151 MS.gene62444:intron 45.0%
CTCTTTGCTCATGGTGAAGA+AGG - chr8.2:14407506-14407525 MS.gene62444:intron 45.0%
GACCCCAATATTGAGGATCA+CGG + chr8.2:14408614-14408633 None:intergenic 45.0%
GGAATGTGAACAAGCAAGCA+AGG - chr8.2:14407411-14407430 MS.gene62444:intron 45.0%
GGCATATAAACATGGAGCTG+CGG + chr8.2:14407993-14408012 None:intergenic 45.0%
GTATACGCTTCTTAGTTGGC+TGG + chr8.2:14408963-14408982 None:intergenic 45.0%
TCAGAGTTACAAGTTCCTGG+TGG - chr8.2:14408868-14408887 MS.gene62444:CDS 45.0%
TGCAAGACAACCGATACTTC+AGG + chr8.2:14408846-14408865 None:intergenic 45.0%
TGCCGTGATCCTCAATATTG+GGG - chr8.2:14408609-14408628 MS.gene62444:CDS 45.0%
TGTAGCAATTGGAAGGAGAC+AGG - chr8.2:14407458-14407477 MS.gene62444:intron 45.0%
TTCCATTCAGAACCTTAGGG+AGG + chr8.2:14407794-14407813 None:intergenic 45.0%
TTCCTGACAATGCGGTTGAT+GGG + chr8.2:14408270-14408289 None:intergenic 45.0%
TTGGTCCGTGTAACGATGAT+CGG - chr8.2:14407183-14407202 MS.gene62444:intron 45.0%
! ACTAGCTTCTGCGAATTTGG+TGG + chr8.2:14407164-14407183 None:intergenic 45.0%
! AGGAGGGCATATCAATGGAT+TGG + chr8.2:14407000-14407019 None:intergenic 45.0%
! CCAACTAGCTTCTGCGAATT+TGG + chr8.2:14407167-14407186 None:intergenic 45.0%
! TTGCTGTTCGCGGAAAAATG+TGG - chr8.2:14408092-14408111 MS.gene62444:intron 45.0%
!! TACCTCCCTAAGGTTCTGAA+TGG - chr8.2:14407789-14407808 MS.gene62444:intron 45.0%
!! TTTCTGCCATAAATGGGCTG+TGG - chr8.2:14407902-14407921 MS.gene62444:intron 45.0%
AAACATGGAGCTGCGGCATA+TGG + chr8.2:14407986-14408005 None:intergenic 50.0%
AACTGCAGCTTCGGCTTCAA+TGG + chr8.2:14408920-14408939 None:intergenic 50.0%
AGCTGCAGTTGCCATAGCAA+AGG - chr8.2:14408930-14408949 MS.gene62444:CDS 50.0%
ATCGGCTGCAGCTGGAAAAT+CGG - chr8.2:14407201-14407220 MS.gene62444:intron 50.0%
CATTGATATGCCCTCCTCCA+AGG - chr8.2:14407003-14407022 MS.gene62444:CDS 50.0%
CTGGTGCTCTTCCTTTGCTA+TGG + chr8.2:14408944-14408963 None:intergenic 50.0%
GATTGAGGAAGGGTCATCCT+TGG + chr8.2:14407023-14407042 None:intergenic 50.0%
GCAATGGGACAACAAGTAGG+AGG + chr8.2:14407752-14407771 None:intergenic 50.0%
TGCAGCCGATCATCGTTACA+CGG + chr8.2:14407191-14407210 None:intergenic 50.0%
TGCTATGGCAACTGCAGCTT+CGG + chr8.2:14408929-14408948 None:intergenic 50.0%
TGGAAACAAGCCGGGTATCA+TGG + chr8.2:14407963-14407982 None:intergenic 50.0%
TTCCCATCAACCGCATTGTC+AGG - chr8.2:14408265-14408284 MS.gene62444:intron 50.0%
! AGCTTCTGCGAATTTGGTGG+TGG + chr8.2:14407161-14407180 None:intergenic 50.0%
! CTTGGAGGAGGGCATATCAA+TGG + chr8.2:14407005-14407024 None:intergenic 50.0%
! GCATATGGTGGAAACAAGCC+GGG + chr8.2:14407971-14407990 None:intergenic 50.0%
! GGCATATGGTGGAAACAAGC+CGG + chr8.2:14407972-14407991 None:intergenic 50.0%
!! AGCAAGCAAGGGGCACTTAT+CGG - chr8.2:14407423-14407442 MS.gene62444:intron 50.0%
!! ATAAATGGGCTGTGGCATGG+CGG - chr8.2:14407910-14407929 MS.gene62444:intron 50.0%
!! ATGGCGGACTTTGTGCTAGT+CGG - chr8.2:14407926-14407945 MS.gene62444:intron 50.0%
AAGGTCTGCGACCATGACTG+TGG + chr8.2:14408694-14408713 None:intergenic 55.0%
GAAGGGTCATCCTTGGAGGA+GGG + chr8.2:14407016-14407035 None:intergenic 55.0%
GCCATGCCACAGCCCATTTA+TGG + chr8.2:14407911-14407930 None:intergenic 55.0%
GGCGGTGACATCTTAGAGGT+TGG + chr8.2:14406924-14406943 None:intergenic 55.0%
TAACGATGATCGGCTGCAGC+TGG - chr8.2:14407193-14407212 MS.gene62444:intron 55.0%
TCAGCTTCAATGGCTCCACC+AGG + chr8.2:14408886-14408905 None:intergenic 55.0%
TCGGCTGCAGCTGGAAAATC+GGG - chr8.2:14407202-14407221 MS.gene62444:intron 55.0%
TCTCAGCCACACCACAGTCA+TGG - chr8.2:14408680-14408699 MS.gene62444:CDS 55.0%
TGAGGAAGGGTCATCCTTGG+AGG + chr8.2:14407020-14407039 None:intergenic 55.0%
TTGCGGCGGTGACATCTTAG+AGG + chr8.2:14406928-14406947 None:intergenic 55.0%
!! GCCATAAATGGGCTGTGGCA+TGG - chr8.2:14407907-14407926 MS.gene62444:intron 55.0%
CATGGAGCTGCGGCATATGG+TGG + chr8.2:14407983-14408002 None:intergenic 60.0%
CTGCGACCATGACTGTGGTG+TGG + chr8.2:14408689-14408708 None:intergenic 60.0%
GGAAGGGTCATCCTTGGAGG+AGG + chr8.2:14407017-14407036 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 14406900 14409038 14406900 ID=MS.gene62444
chr8.2 mRNA 14406900 14409038 14406900 ID=MS.gene62444.t1;Parent=MS.gene62444
chr8.2 exon 14408411 14409038 14408411 ID=MS.gene62444.t1.exon1;Parent=MS.gene62444.t1
chr8.2 CDS 14408411 14409038 14408411 ID=cds.MS.gene62444.t1;Parent=MS.gene62444.t1
chr8.2 exon 14406900 14407066 14406900 ID=MS.gene62444.t1.exon2;Parent=MS.gene62444.t1
chr8.2 CDS 14406900 14407066 14406900 ID=cds.MS.gene62444.t1;Parent=MS.gene62444.t1
Gene Sequence

>MS.gene62444

ATGGCTTTTCCATATGATATTCCAACCTCTAAGATGTCACCGCCGCAATTCACTTCATTGAACAACAATGACTTCAAAAGGGAAGGAACTTCTCATTCCAATCCATTGATATGCCCTCCTCCAAGGATGACCCTTCCTCAATCAAACAGATCAGACCACATTTTCTACAAAACACGAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAACGGAAATAATTGCAACTTTGCTCATGGAGCTGAAGAGATAAGGCAACCACCACCAAATTCGCAGAAGCTAGTTGGTCCGTGTAACGATGATCGGCTGCAGCTGGAAAATCGGGCTGAATATCAAAAAATCATACAAAGGATGAAACTGTGCAAGCATTATTGCAATGGGGAGGAATGTCCATATGGAGATAAGTGTATATTCCTTCATGAAGATCCTGCACAGTTTAGGAATGAATATTCCTTGAAATCAAGAGAGTGCTTCGCAATAACCATTGAAACTAATAATTTGGAAGGCAGCAGGAATGTGAACAAGCAAGCAAGGGGCACTTATCGGACGACTAAACTGTGTAGCAATTGGAAGGAGACAGGATATTGTTCCTATGGAAAGAACTGTCTCTTTGCTCATGGTGAAGAAGGTAACAATAATATACTTTGATTATTTGTTTCGGTTTTAACATATAATTCTATTGCTTTATTTTGTTTAATTATATAAAATATGTTATTTTCTAGATGCTGTGTATAATGTCATTTTCTGTGATATGATGTGCAAATTACAGTGTTTGAATGGTTTGAATGTGTGTCATTTTGTTGTTGTGTTGTGTATGATGTTTCATGTTTGGTTTGACATAAACTTGCTCCTCCTACTTGTTGTCCCATTGCCTTATCTTGCAAAAATGTACCTCCCTAAGGTTCTGAATGGAAAATGATTCCATCCTTGTTTATAGGCATAGCAGGTTCTGAATGTACCTTCATGTATGATTAATGATCACATTATCTCCTTGTTATCAAATTTCTGCCATAAATGGGCTGTGGCATGGCGGACTTTGTGCTAGTCGGCATAGTCTATACCATGATACCCGGCTTGTTTCCACCATATGCCGCAGCTCCATGTTTATATGCCAGATTTTTCGCCAGATACCTTAATCCGCATTTTGCTTATGATAACTTTGCTCTAGCTGAGATTTACATTATGTTGTTAATTGCTGTTCGCGGAAAAATGTGGTTAGTTCGAATTCCGTTCTGCAATAGTGCTATAGACGCTATTTCACAATATTTTGTTTTGTACTAAATAAAGTTTGGTGGGGCAATAGTCATTTGTTCAAATCCCGCTATTTAACAGCACTTACATAATACTTGAATGAAATTCTGAATTTTCCCATCAACCGCATTGTCAGGAATTTTTATATTATAGAAATGTCTAAGTTTTCATAAATTAAAATAGCTAACCCCCTCTTTATTCTAATGGATCATTACTATTGTATGGTGTTGAAAGTTAAGAGAAAAAAATCCACAGTTTTACATTTGTTAAGATACTAGAATTTGTTGTAGTTTGGAGTAATTTGTGATTCTTAATAACCAGCTATTGTATTATGTTCATCTTTTCCAACTTTGTTTCTTCTTAAAGTTTTTGTTGATAATTGCCTACAAATTTGATGTCTGACATGAACAATAATTTTGAGGTACATTGCTCATTTGCAAAGTTTTAAATTGCGACCATGCCGTGATCCTCAATATTGGGGTCAAATATGGTTAATGCAGATGCATTTGTGTGTGAATGTATGATAACGTCTCAGCCACACCACAGTCATGGTCGCAGACCTTATATTTAAAAAAACTCTTGCTCGTTTGTGTGCGAGTGTATGATAACTTATATTTGCATATTGTAAGCGAAAATTACAACATGATTAAAACAACTGCAACTGTTTGGTTTCCATGTATATTGTTCTGACTCCTGAAGTATCGGTTGTCTTGCAAATCAGAGTTACAAGTTCCTGGTGGAGCCATTGAAGCTGATGCTGCAGTTGCCATTGAAGCCGAAGCTGCAGTTGCCATAGCAAAGGAAGAGCACCAGCCAACTAAGAAGCGTATACTTGGGCTGAAATTCAGCCAGATCAATCGAATTTACGGTGATTGGATTGATGATTGA
Protein sequence

>MS.gene62444.t1

MAFPYDIPTSKMSPPQFTSLNNNDFKREGTSHSNPLICPPPRMTLPQSNRSDHIFYKTRICTKFRFGACRNGNNCNFAHGAEEIRQPPPNSQKLVGPCNDDRLQLENRAEYQKIIQRMKLCKHYCNGEECPYGDKCIFLHEDPAQFRNEYSLKSRECFAITIETNNLEGSRNVNKQARGTYRTTKLCSNWKETGYCSYGKNCLFAHGEEELQVPGGAIEADAAVAIEAEAAVAIAKEEHQPTKKRILGLKFSQINRIYGDWIDD