AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62451

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62451.t1 MTR_4g113860 85.449 323 41 2 1 319 1 321 0.0 566
MS.gene62451.t1 MTR_4g113970 59.302 258 79 6 1 240 1 250 6.87e-107 312
MS.gene62451.t1 MTR_4g113940 49.673 306 117 6 1 305 1 270 2.06e-97 288
MS.gene62451.t1 MTR_3g050390 46.350 274 102 9 51 318 7 241 1.24e-72 224
MS.gene62451.t1 MTR_4g113890 41.776 304 103 5 1 304 1 230 1.74e-71 221
MS.gene62451.t1 MTR_8g066730 29.180 305 127 10 77 305 83 374 1.77e-28 113
MS.gene62451.t1 MTR_8g066730 30.698 215 88 5 77 240 83 287 3.63e-22 94.7
MS.gene62451.t1 MTR_3g466460 64.474 76 24 2 239 313 29 102 4.16e-19 82.4
MS.gene62451.t1 MTR_4g113980 61.429 70 23 3 238 305 23 90 6.10e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62451.t1 AT3G19360 38.199 322 133 10 49 308 59 376 1.20e-62 204
MS.gene62451.t1 AT3G19360 38.199 322 133 10 49 308 59 376 1.20e-62 204
MS.gene62451.t1 AT1G32360 26.621 293 146 6 82 305 90 382 1.02e-21 94.7
MS.gene62451.t1 AT2G35430 26.178 191 112 4 138 305 66 250 1.34e-13 70.1

Find 83 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGATCAATCGTGTTTA+TGG 0.098083 8.2:-14461193 MS.gene62451:CDS
TCCTTTGCCACAAGTCTTGC+AGG 0.252708 8.2:+14461259 None:intergenic
GACAGCAGCAGCTGAGAAAT+TGG 0.269527 8.2:-14463142 MS.gene62451:CDS
ATTGGTTCTTCAAAGTCATT+TGG 0.270173 8.2:-14462954 MS.gene62451:CDS
ATGAGGATCCTGCTAAGTTT+AGG 0.284721 8.2:-14463025 MS.gene62451:CDS
TCTATAAGCATTGGGGCTAT+TGG 0.301858 8.2:-14462972 MS.gene62451:CDS
TAAGACTGCCACCACGAAAT+TGG 0.308491 8.2:-14463193 MS.gene62451:CDS
TTGGTTCTTCAAAGTCATTT+GGG 0.308872 8.2:-14462953 MS.gene62451:CDS
GATGGAGGAAGAACCATCTT+TGG 0.330810 8.2:+14463323 None:intergenic
TGAGGATCCTGCTAAGTTTA+GGG 0.331108 8.2:-14463024 MS.gene62451:CDS
TCCACTGCACTTGGCAAGTT+GGG 0.333885 8.2:+14461139 None:intergenic
AATGGTGAGAAATGTTTCTT+TGG 0.334123 8.2:-14463068 MS.gene62451:CDS
TTGCGGCGGTGACATCTTAC+AGG 0.346131 8.2:+14463502 None:intergenic
AGCCAGCTAGAGGCACTTAT+TGG 0.353667 8.2:-14462920 MS.gene62451:CDS
ACTTCACGAAAAGCCTTAAC+AGG 0.358557 8.2:-14461316 MS.gene62451:CDS
TCAATCGTGTTTATGGTGAT+TGG 0.369324 8.2:-14461186 MS.gene62451:CDS
ATCAAGGGAGATGTCCCTTT+GGG 0.372752 8.2:-14462869 MS.gene62451:CDS
GCTAAGTTTAGGGATCATTC+TGG 0.384575 8.2:-14463014 MS.gene62451:CDS
TTCAAAGTCATTTGGGGCTG+TGG 0.389237 8.2:-14462946 MS.gene62451:CDS
ACGTGGTCTGCTCTGTTTGA+TGG 0.398666 8.2:+14463305 None:intergenic
ATCAACCCCATTCCTTCAAA+AGG 0.402198 8.2:-14463394 MS.gene62451:CDS
AGTGTTCTTCTATAAGCATT+GGG 0.403399 8.2:-14462980 MS.gene62451:CDS
AAAGAAACATTTCTCACCAT+TGG 0.440730 8.2:+14463070 None:intergenic
TTACAGGTTGGAATATTGTC+TGG 0.446583 8.2:+14463518 None:intergenic
TTAAGAAGATGCATTTACTT+TGG 0.454114 8.2:-14461225 MS.gene62451:CDS
CTCCACTGCACTTGGCAAGT+TGG 0.458746 8.2:+14461138 None:intergenic
ATCATTGGCAGAACCTGTTA+AGG 0.460853 8.2:+14461303 None:intergenic
CATCAAGGGAGATGTCCCTT+TGG 0.465946 8.2:-14462870 MS.gene62451:CDS
TGCCACAAGTCTTGCAGGGA+AGG 0.471441 8.2:+14461264 None:intergenic
ACAGCAGCAGCTGAGAAATT+GGG 0.480050 8.2:-14463141 MS.gene62451:CDS
CCCTGCAAGACTTGTGGCAA+AGG 0.480562 8.2:-14461260 MS.gene62451:CDS
GGTAGGTGCATATGCATCAT+TGG 0.482923 8.2:+14461288 None:intergenic
GATATGCCCTCCTCCAAAGA+TGG 0.484001 8.2:-14463336 MS.gene62451:CDS
CTAAGTTTAGGGATCATTCT+GGG 0.485241 8.2:-14463013 MS.gene62451:CDS
AAAGATTGCAACTTTGCTCA+TGG 0.488168 8.2:-14463227 MS.gene62451:CDS
GTTTCTACAAGTACCAAGTC+TGG 0.493005 8.2:+14463253 None:intergenic
AAGATTGCAACTTTGCTCAT+GGG 0.501520 8.2:-14463226 MS.gene62451:CDS
TTCCAATAAGTGCCTCTAGC+TGG 0.502818 8.2:+14462918 None:intergenic
AGTCAGTTCTCCACTGCACT+TGG 0.503719 8.2:+14461130 None:intergenic
TTCACAAGATGAAGCTATGC+AGG 0.506731 8.2:-14463100 MS.gene62451:CDS
CAATTTGCTCATGGAGAAGC+AGG 0.507401 8.2:-14462837 MS.gene62451:intron
ATCTCCCTTGATGCTGCCAA+TGG 0.509822 8.2:+14462880 None:intergenic
AGACTAAGACGTGTTTCCAT+TGG 0.510007 8.2:-14462896 MS.gene62451:CDS
GAATGATCCCTAAACTTAGC+AGG 0.515278 8.2:+14463017 None:intergenic
GAGTGTTCTTCTATAAGCAT+TGG 0.515583 8.2:-14462981 MS.gene62451:CDS
GTTTCCATTGGCAGCATCAA+GGG 0.516368 8.2:-14462884 MS.gene62451:CDS
AGACTTGGTACTTGTAGAAA+CGG 0.521320 8.2:-14463251 MS.gene62451:CDS
GAGGACTGTCAATTTGCTCA+TGG 0.526443 8.2:-14462846 MS.gene62451:CDS
AAGACTTGTGGCAAAGGAAG+AGG 0.529531 8.2:-14461254 MS.gene62451:CDS
TGTTTCCATTGGCAGCATCA+AGG 0.535568 8.2:-14462885 MS.gene62451:CDS
TGTGGCAAAGGAAGAGGAGC+AGG 0.535571 8.2:-14461248 MS.gene62451:CDS
ACTAGCTCCTGCCAATTTCG+TGG 0.541649 8.2:+14463182 None:intergenic
TGGTTCTTCAAAGTCATTTG+GGG 0.545756 8.2:-14462952 MS.gene62451:CDS
CCTTTGCCACAAGTCTTGCA+GGG 0.547135 8.2:+14461260 None:intergenic
AGATTGCAACTTTGCTCATG+GGG 0.548831 8.2:-14463225 MS.gene62451:CDS
TCCCAACTTGCCAAGTGCAG+TGG 0.549943 8.2:-14461140 MS.gene62451:CDS
AGGAGGGCATATCAAAGCAT+TGG 0.555491 8.2:+14463346 None:intergenic
ACTGCCACCACGAAATTGGC+AGG 0.556769 8.2:-14463189 MS.gene62451:CDS
GGAAGAACCATCTTTGGAGG+AGG 0.559899 8.2:+14463329 None:intergenic
AATTGACAGTCCTCCCCAAA+GGG 0.560613 8.2:+14462855 None:intergenic
TCAACCCCATTCCTTCAAAA+GGG 0.563397 8.2:-14463393 MS.gene62451:CDS
GGAGGAAGAACCATCTTTGG+AGG 0.566069 8.2:+14463326 None:intergenic
CACCTTCCCTGCAAGACTTG+TGG 0.570439 8.2:-14461266 MS.gene62451:CDS
GTCTGTAATAAGTCCAGACT+TGG 0.573982 8.2:-14463266 MS.gene62451:CDS
CACAAGTCTTGCAGGGAAGG+TGG 0.574444 8.2:+14461267 None:intergenic
AGTCTTGCAGGGAAGGTGGT+AGG 0.597135 8.2:+14461271 None:intergenic
GGCGGTGACATCTTACAGGT+TGG 0.597501 8.2:+14463506 None:intergenic
CTAGTTAGTTCTCGCAGCGA+CGG 0.603497 8.2:-14463164 MS.gene62451:CDS
GGCAAGTTGGGAAGAACAAG+AGG 0.612688 8.2:+14461151 None:intergenic
GCTGTGGACAAGCCAGCTAG+AGG 0.623188 8.2:-14462930 MS.gene62451:CDS
AAATTGACAGTCCTCCCCAA+AGG 0.626382 8.2:+14462854 None:intergenic
CTGTTTGATGTAGTGAATTG+CGG 0.628943 8.2:+14463485 None:intergenic
GAAGAACCATCTTTGGAGGA+GGG 0.630074 8.2:+14463330 None:intergenic
CACGAGTCTTGTAGAAAACG+TGG 0.640632 8.2:+14463288 None:intergenic
AGGGAGATGTCCCTTTGGGG+AGG 0.652421 8.2:-14462865 MS.gene62451:CDS
CTATGCAGGATGTATTCCAA+TGG 0.653635 8.2:-14463086 MS.gene62451:CDS
GTGTTCTTCTATAAGCATTG+GGG 0.654358 8.2:-14462979 MS.gene62451:CDS
TGGTCTGCTCTGTTTGATGG+AGG 0.659565 8.2:+14463308 None:intergenic
TCAAGGGAGATGTCCCTTTG+GGG 0.666746 8.2:-14462868 MS.gene62451:CDS
AGCTCCTGCCAATTTCGTGG+TGG 0.669372 8.2:+14463185 None:intergenic
GCAGCAGCTGAGAAATTGGG+AGG 0.680326 8.2:-14463138 MS.gene62451:CDS
TTTGATGTAGTGAATTGCGG+CGG 0.699237 8.2:+14463488 None:intergenic
AATATTGTCTGGAAGAACCA+TGG 0.708668 8.2:+14463529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCAATATATATTAAAAAA+AGG + chr8.2:14463175-14463194 None:intergenic 10.0%
!! AAAAGATGAATATAACATAA+TGG + chr8.2:14462938-14462957 None:intergenic 15.0%
!! CAAAATCAATAATCAAAATA+GGG + chr8.2:14461883-14461902 None:intergenic 15.0%
!!! ATCCATTTACAAATTTTTTA+TGG + chr8.2:14462433-14462452 None:intergenic 15.0%
!!! TTAATCATCTCAATTTTATA+AGG - chr8.2:14462651-14462670 MS.gene62451:intron 15.0%
!! AATAATCAAAATAGGGAAAA+GGG + chr8.2:14461876-14461895 None:intergenic 20.0%
!! AGCCATAAAAAATTTGTAAA+TGG - chr8.2:14462428-14462447 MS.gene62451:intron 20.0%
!! ATATGATGTTCAAATTATAG+TGG - chr8.2:14461997-14462016 MS.gene62451:intron 20.0%
!! CCAAAATCAATAATCAAAAT+AGG + chr8.2:14461884-14461903 None:intergenic 20.0%
!!! CCTATTTTGATTATTGATTT+TGG - chr8.2:14461881-14461900 MS.gene62451:intron 20.0%
!!! GTGTTTATATGTTGTATTTT+TGG - chr8.2:14462486-14462505 MS.gene62451:intron 20.0%
!!! TATTTTTATGTATTGGATCA+CGG + chr8.2:14462894-14462913 None:intergenic 20.0%
!!! TCACATGTATTTTTATGTAT+TGG + chr8.2:14462901-14462920 None:intergenic 20.0%
!!! TTTTAACAATTTAAACTGTC+TGG - chr8.2:14463248-14463267 MS.gene62451:CDS 20.0%
! AAAACTGTGTTGTCAAATAT+CGG - chr8.2:14462107-14462126 MS.gene62451:intron 25.0%
! AAAGATAAAGTAATCACTAG+TGG + chr8.2:14462273-14462292 None:intergenic 25.0%
! AAGGCATGATTACTATTAAA+TGG - chr8.2:14462670-14462689 MS.gene62451:intron 25.0%
! CAATAATCAAAATAGGGAAA+AGG + chr8.2:14461877-14461896 None:intergenic 25.0%
! CATATTTGACTGCAATATTA+AGG + chr8.2:14463084-14463103 None:intergenic 25.0%
! CTTAATATTGCAGTCAAATA+TGG - chr8.2:14463082-14463101 MS.gene62451:CDS 25.0%
! TCAAATAGAAATTCCTAATG+TGG + chr8.2:14462599-14462618 None:intergenic 25.0%
! TCCAATGAAAAATGAAAACT+TGG - chr8.2:14461224-14461243 MS.gene62451:CDS 25.0%
! TGAGTTAGACATCAAATTAT+AGG + chr8.2:14463001-14463020 None:intergenic 25.0%
! TTAAGAAGATGCATTTACTT+TGG - chr8.2:14463434-14463453 MS.gene62451:CDS 25.0%
!! TACATATCAGTGTTGTTAAA+TGG - chr8.2:14462366-14462385 MS.gene62451:intron 25.0%
!! TATATGTCGATGGATATTTT+GGG - chr8.2:14462861-14462880 MS.gene62451:CDS 25.0%
!!! TAAGTGTTATTTTCTTCATG+AGG - chr8.2:14461617-14461636 MS.gene62451:intron 25.0%
!!! TCCAAGTTTTCATTTTTCAT+TGG + chr8.2:14461228-14461247 None:intergenic 25.0%
!!! TGACTGAAATTTTAGTAGTT+TGG - chr8.2:14462717-14462736 MS.gene62451:intron 25.0%
AAAGAAACATTTCTCACCAT+TGG + chr8.2:14461592-14461611 None:intergenic 30.0%
AACAAGATCAATCGTGTTTA+TGG - chr8.2:14463466-14463485 MS.gene62451:CDS 30.0%
AATGGTGAGAAATGTTTCTT+TGG - chr8.2:14461591-14461610 MS.gene62451:intron 30.0%
ACAACTGCTATGTTTATCTA+AGG - chr8.2:14462341-14462360 MS.gene62451:intron 30.0%
AGTGTTCTTCTATAAGCATT+GGG - chr8.2:14461679-14461698 MS.gene62451:intron 30.0%
ATCATATAATTCTGCTGTAC+TGG - chr8.2:14461908-14461927 MS.gene62451:intron 30.0%
CAATATTAAGGATTGTGACA+TGG + chr8.2:14463072-14463091 None:intergenic 30.0%
CTTGTCGGATAAAAAAAAGT+AGG - chr8.2:14462824-14462843 MS.gene62451:intron 30.0%
CTTTATAGCTGATAACAGAA+AGG + chr8.2:14462762-14462781 None:intergenic 30.0%
TGTTATCAGCTATAAAGCAT+GGG - chr8.2:14462765-14462784 MS.gene62451:intron 30.0%
! ATTGGTTCTTCAAAGTCATT+TGG - chr8.2:14461705-14461724 MS.gene62451:intron 30.0%
! GCGTATGATATTTTCATGTT+TGG - chr8.2:14462045-14462064 MS.gene62451:intron 30.0%
! GTATATGTCGATGGATATTT+TGG - chr8.2:14462860-14462879 MS.gene62451:CDS 30.0%
! TTGGTTCTTCAAAGTCATTT+GGG - chr8.2:14461706-14461725 MS.gene62451:intron 30.0%
!! CTAACTCATCAATAGTTTTG+AGG - chr8.2:14463013-14463032 MS.gene62451:CDS 30.0%
!! TCATTTTTCATTGGAAATCG+AGG + chr8.2:14461219-14461238 None:intergenic 30.0%
AAAGATTGCAACTTTGCTCA+TGG - chr8.2:14461432-14461451 MS.gene62451:intron 35.0%
AAGATTGCAACTTTGCTCAT+GGG - chr8.2:14461433-14461452 MS.gene62451:intron 35.0%
ACCAAAAGGAAAAACAGGTT+TGG + chr8.2:14462961-14462980 None:intergenic 35.0%
ATGAGTCAGAATACGATACA+TGG + chr8.2:14463277-14463296 None:intergenic 35.0%
CAGAAACCAAAAGGAAAAAC+AGG + chr8.2:14462966-14462985 None:intergenic 35.0%
CTAAGTTTAGGGATCATTCT+GGG - chr8.2:14461646-14461665 MS.gene62451:intron 35.0%
CTGTTATCAGCTATAAAGCA+TGG - chr8.2:14462764-14462783 MS.gene62451:intron 35.0%
CTGTTTGATGTAGTGAATTG+CGG + chr8.2:14461177-14461196 None:intergenic 35.0%
GAGTGTTCTTCTATAAGCAT+TGG - chr8.2:14461678-14461697 MS.gene62451:intron 35.0%
GGATCGTTAAATATACTGGA+AGG + chr8.2:14462512-14462531 None:intergenic 35.0%
GTATATTTAACGATCCTCCA+TGG - chr8.2:14462516-14462535 MS.gene62451:intron 35.0%
TAAACCAGTGTTAACGATGA+CGG + chr8.2:14462239-14462258 None:intergenic 35.0%
TCAATCGTGTTTATGGTGAT+TGG - chr8.2:14463473-14463492 MS.gene62451:CDS 35.0%
TCTTTGTGTTCAAATTTCCG+TGG - chr8.2:14462288-14462307 MS.gene62451:intron 35.0%
TGGAGGATCGTTAAATATAC+TGG + chr8.2:14462516-14462535 None:intergenic 35.0%
TGGTTCTTCAAAGTCATTTG+GGG - chr8.2:14461707-14461726 MS.gene62451:intron 35.0%
! AGAAATTCTTGCCCTTTTGA+AGG + chr8.2:14461280-14461299 None:intergenic 35.0%
! AGACTTGGTACTTGTAGAAA+CGG - chr8.2:14461408-14461427 MS.gene62451:intron 35.0%
! ATATCAATGTGTTGCTACCA+CGG + chr8.2:14462308-14462327 None:intergenic 35.0%
! ATTTTCGTGTCAACCACATT+AGG - chr8.2:14462583-14462602 MS.gene62451:intron 35.0%
! GTGTTCTTCTATAAGCATTG+GGG - chr8.2:14461680-14461699 MS.gene62451:intron 35.0%
! TTACAGGTTGGAATATTGTC+TGG + chr8.2:14461144-14461163 None:intergenic 35.0%
!! TAGGTATCGAAATTGCTTGT+CGG - chr8.2:14462809-14462828 MS.gene62451:intron 35.0%
!! TCCAAACCTGTTTTTCCTTT+TGG - chr8.2:14462957-14462976 MS.gene62451:CDS 35.0%
AAAAGTAGGATGCTGCACTT+TGG - chr8.2:14462838-14462857 MS.gene62451:CDS 40.0%
AAACACACCATTGTGACCTA+TGG + chr8.2:14462472-14462491 None:intergenic 40.0%
AAACGTCTATGCAACAATCG+TGG - chr8.2:14463142-14463161 MS.gene62451:CDS 40.0%
ACTGTGTTGTCAAATATCGG+CGG - chr8.2:14462110-14462129 MS.gene62451:intron 40.0%
ACTTCACGAAAAGCCTTAAC+AGG - chr8.2:14463343-14463362 MS.gene62451:CDS 40.0%
AGACTAAGACGTGTTTCCAT+TGG - chr8.2:14461763-14461782 MS.gene62451:intron 40.0%
AGATTGCAACTTTGCTCATG+GGG - chr8.2:14461434-14461453 MS.gene62451:intron 40.0%
ATCAACCCCATTCCTTCAAA+AGG - chr8.2:14461265-14461284 MS.gene62451:CDS 40.0%
ATCATTGGCAGAACCTGTTA+AGG + chr8.2:14463359-14463378 None:intergenic 40.0%
ATGAGGATCCTGCTAAGTTT+AGG - chr8.2:14461634-14461653 MS.gene62451:intron 40.0%
CATAGCCATCCTTCACAAAT+TGG + chr8.2:14462167-14462186 None:intergenic 40.0%
CTATGCAGGATGTATTCCAA+TGG - chr8.2:14461573-14461592 MS.gene62451:intron 40.0%
GAATGATCCCTAAACTTAGC+AGG + chr8.2:14461645-14461664 None:intergenic 40.0%
GCTAAGTTTAGGGATCATTC+TGG - chr8.2:14461645-14461664 MS.gene62451:intron 40.0%
GTCTGTAATAAGTCCAGACT+TGG - chr8.2:14461393-14461412 MS.gene62451:intron 40.0%
GTTTCTACAAGTACCAAGTC+TGG + chr8.2:14461409-14461428 None:intergenic 40.0%
TCAACCCCATTCCTTCAAAA+GGG - chr8.2:14461266-14461285 MS.gene62451:CDS 40.0%
TGAGGATCCTGCTAAGTTTA+GGG - chr8.2:14461635-14461654 MS.gene62451:intron 40.0%
TGCACTTTGGTATATGTCGA+TGG - chr8.2:14462851-14462870 MS.gene62451:CDS 40.0%
TTCACAAGATGAAGCTATGC+AGG - chr8.2:14461559-14461578 MS.gene62451:intron 40.0%
TTTGATGTAGTGAATTGCGG+CGG + chr8.2:14461174-14461193 None:intergenic 40.0%
! CGGTCAAATGGCAGATTTTT+AGG - chr8.2:14462130-14462149 MS.gene62451:intron 40.0%
! GTTAAGGCTTTTCGTGAAGT+TGG + chr8.2:14463343-14463362 None:intergenic 40.0%
!! TCTATAAGCATTGGGGCTAT+TGG - chr8.2:14461687-14461706 MS.gene62451:intron 40.0%
!! TCTTGCCCTTTTGAAGGAAT+GGG + chr8.2:14461274-14461293 None:intergenic 40.0%
!! TTCTTGCCCTTTTGAAGGAA+TGG + chr8.2:14461275-14461294 None:intergenic 40.0%
!!! TCCTTTTGGTTTCTGCTGAT+GGG - chr8.2:14462971-14462990 MS.gene62451:CDS 40.0%
!!! TTCCTTTTGGTTTCTGCTGA+TGG - chr8.2:14462970-14462989 MS.gene62451:CDS 40.0%
AAATTGACAGTCCTCCCCAA+AGG + chr8.2:14461808-14461827 None:intergenic 45.0%
AAGACTTGTGGCAAAGGAAG+AGG - chr8.2:14463405-14463424 MS.gene62451:CDS 45.0%
AATTGACAGTCCTCCCCAAA+GGG + chr8.2:14461807-14461826 None:intergenic 45.0%
ACAGCAGCAGCTGAGAAATT+GGG - chr8.2:14461518-14461537 MS.gene62451:intron 45.0%
ACCCATCAGCAGAAACCAAA+AGG + chr8.2:14462975-14462994 None:intergenic 45.0%
ATCAAGGGAGATGTCCCTTT+GGG - chr8.2:14461790-14461809 MS.gene62451:intron 45.0%
CATCCTTCACAAATTGGCCA+TGG + chr8.2:14462161-14462180 None:intergenic 45.0%
CATGGCCAATTTGTGAAGGA+TGG - chr8.2:14462159-14462178 MS.gene62451:intron 45.0%
GATGGAGGAAGAACCATCTT+TGG + chr8.2:14461339-14461358 None:intergenic 45.0%
GGTAGGTGCATATGCATCAT+TGG + chr8.2:14463374-14463393 None:intergenic 45.0%
GTCAAATATCGGCGGTCAAA+TGG - chr8.2:14462118-14462137 MS.gene62451:intron 45.0%
GTTTCCATTGGCAGCATCAA+GGG - chr8.2:14461775-14461794 MS.gene62451:intron 45.0%
TAAGACTGCCACCACGAAAT+TGG - chr8.2:14461466-14461485 MS.gene62451:intron 45.0%
TAAGCCACCATAAAACGCCA+TGG + chr8.2:14462190-14462209 None:intergenic 45.0%
TCTGCCACACTATTCTGTCT+TGG + chr8.2:14462397-14462416 None:intergenic 45.0%
TGTTTCCATTGGCAGCATCA+AGG - chr8.2:14461774-14461793 MS.gene62451:intron 45.0%
TTCCAATAAGTGCCTCTAGC+TGG + chr8.2:14461744-14461763 None:intergenic 45.0%
! AGGAGGGCATATCAAAGCAT+TGG + chr8.2:14461316-14461335 None:intergenic 45.0%
! CAATTTGCTCATGGAGAAGC+AGG - chr8.2:14461822-14461841 MS.gene62451:intron 45.0%
! CACGAGTCTTGTAGAAAACG+TGG + chr8.2:14461374-14461393 None:intergenic 45.0%
! GAAGAACCATCTTTGGAGGA+GGG + chr8.2:14461332-14461351 None:intergenic 45.0%
! GAGGACTGTCAATTTGCTCA+TGG - chr8.2:14461813-14461832 MS.gene62451:intron 45.0%
! TATGCCATGGCGTTTTATGG+TGG - chr8.2:14462183-14462202 MS.gene62451:intron 45.0%
! TTCAAAGTCATTTGGGGCTG+TGG - chr8.2:14461713-14461732 MS.gene62451:intron 45.0%
!! CTTGCCCTTTTGAAGGAATG+GGG + chr8.2:14461273-14461292 None:intergenic 45.0%
!!! CAGATTTTTAGGAAGCGCCA+TGG - chr8.2:14462141-14462160 MS.gene62451:intron 45.0%
ACCTACTTGCGTAACCACCA+CGG + chr8.2:14462794-14462813 None:intergenic 50.0%
ACGTGGTCTGCTCTGTTTGA+TGG + chr8.2:14461357-14461376 None:intergenic 50.0%
ACTAGCTCCTGCCAATTTCG+TGG + chr8.2:14461480-14461499 None:intergenic 50.0%
AGCGCCAAGACAGAATAGTG+TGG - chr8.2:14462390-14462409 MS.gene62451:intron 50.0%
AGCGTCACCATAGGTCACAA+TGG - chr8.2:14462462-14462481 MS.gene62451:intron 50.0%
AGTGACAGTGTTGTCCATGG+AGG + chr8.2:14462533-14462552 None:intergenic 50.0%
ATCTCCCTTGATGCTGCCAA+TGG + chr8.2:14461782-14461801 None:intergenic 50.0%
CACAGTGACAGTGTTGTCCA+TGG + chr8.2:14462536-14462555 None:intergenic 50.0%
CATCAAGGGAGATGTCCCTT+TGG - chr8.2:14461789-14461808 MS.gene62451:intron 50.0%
CCATCCGTCATCGTTAACAC+TGG - chr8.2:14462232-14462251 MS.gene62451:intron 50.0%
CCTTTGCCACAAGTCTTGCA+GGG + chr8.2:14463402-14463421 None:intergenic 50.0%
CTATAAAGCATGGGTACCCG+TGG - chr8.2:14462774-14462793 MS.gene62451:intron 50.0%
GACAGCAGCAGCTGAGAAAT+TGG - chr8.2:14461517-14461536 MS.gene62451:intron 50.0%
GATATGCCCTCCTCCAAAGA+TGG - chr8.2:14461323-14461342 MS.gene62451:CDS 50.0%
GGAGGAAGAACCATCTTTGG+AGG + chr8.2:14461336-14461355 None:intergenic 50.0%
TCAAGGGAGATGTCCCTTTG+GGG - chr8.2:14461791-14461810 MS.gene62451:intron 50.0%
TCCACTGCACTTGGCAAGTT+GGG + chr8.2:14463523-14463542 None:intergenic 50.0%
TCCTTTGCCACAAGTCTTGC+AGG + chr8.2:14463403-14463422 None:intergenic 50.0%
TGGTCTGCTCTGTTTGATGG+AGG + chr8.2:14461354-14461373 None:intergenic 50.0%
TGTGAAGGATGGCTATGCCA+TGG - chr8.2:14462170-14462189 MS.gene62451:intron 50.0%
! CTAGTTAGTTCTCGCAGCGA+CGG - chr8.2:14461495-14461514 MS.gene62451:intron 50.0%
! GGAAGAACCATCTTTGGAGG+AGG + chr8.2:14461333-14461352 None:intergenic 50.0%
! GGCAAGTTGGGAAGAACAAG+AGG + chr8.2:14463511-14463530 None:intergenic 50.0%
! GGCTATGCCATGGCGTTTTA+TGG - chr8.2:14462180-14462199 MS.gene62451:intron 50.0%
!! AGCCAGCTAGAGGCACTTAT+TGG - chr8.2:14461739-14461758 MS.gene62451:intron 50.0%
!! CCAGTGTTAACGATGACGGA+TGG + chr8.2:14462235-14462254 None:intergenic 50.0%
!! GTGTTAACGATGACGGATGG+TGG + chr8.2:14462232-14462251 None:intergenic 50.0%
ACTGCCACCACGAAATTGGC+AGG - chr8.2:14461470-14461489 MS.gene62451:intron 55.0%
AGCTCCTGCCAATTTCGTGG+TGG + chr8.2:14461477-14461496 None:intergenic 55.0%
AGTCTTGCAGGGAAGGTGGT+AGG + chr8.2:14463391-14463410 None:intergenic 55.0%
CACAAGTCTTGCAGGGAAGG+TGG + chr8.2:14463395-14463414 None:intergenic 55.0%
CACCTTCCCTGCAAGACTTG+TGG - chr8.2:14463393-14463412 MS.gene62451:CDS 55.0%
CCCTGCAAGACTTGTGGCAA+AGG - chr8.2:14463399-14463418 MS.gene62451:CDS 55.0%
CCTACTTGCGTAACCACCAC+GGG + chr8.2:14462793-14462812 None:intergenic 55.0%
CTCCACTGCACTTGGCAAGT+TGG + chr8.2:14463524-14463543 None:intergenic 55.0%
GCAGCAGCTGAGAAATTGGG+AGG - chr8.2:14461521-14461540 MS.gene62451:intron 55.0%
GCGCCATGGCCAATTTGTGA+AGG - chr8.2:14462155-14462174 MS.gene62451:intron 55.0%
GGCGGTGACATCTTACAGGT+TGG + chr8.2:14461156-14461175 None:intergenic 55.0%
TAAAGCATGGGTACCCGTGG+TGG - chr8.2:14462777-14462796 MS.gene62451:intron 55.0%
TCCCAACTTGCCAAGTGCAG+TGG - chr8.2:14463519-14463538 MS.gene62451:CDS 55.0%
TGCAGCTGCAGTTGCAGTGT+CGG - chr8.2:14463109-14463128 MS.gene62451:CDS 55.0%
TGCCACAAGTCTTGCAGGGA+AGG + chr8.2:14463398-14463417 None:intergenic 55.0%
TGTGGCAAAGGAAGAGGAGC+AGG - chr8.2:14463411-14463430 MS.gene62451:CDS 55.0%
TTGCGGCGGTGACATCTTAC+AGG + chr8.2:14461160-14461179 None:intergenic 55.0%
! TGTGACCTATGGTGACGCTG+TGG + chr8.2:14462461-14462480 None:intergenic 55.0%
CCCGTGGTGGTTACGCAAGT+AGG - chr8.2:14462790-14462809 MS.gene62451:intron 60.0%
GCTGTGGACAAGCCAGCTAG+AGG - chr8.2:14461729-14461748 MS.gene62451:intron 60.0%
GTCTGCCACAGCGTCACCAT+AGG - chr8.2:14462453-14462472 MS.gene62451:intron 60.0%
! AGGGAGATGTCCCTTTGGGG+AGG - chr8.2:14461794-14461813 MS.gene62451:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 14461132 14463549 14461132 ID=MS.gene62451
chr8.2 mRNA 14461132 14463549 14461132 ID=MS.gene62451.t1;Parent=MS.gene62451
chr8.2 exon 14462838 14463549 14462838 ID=MS.gene62451.t1.exon1;Parent=MS.gene62451.t1
chr8.2 CDS 14462838 14463549 14462838 ID=cds.MS.gene62451.t1;Parent=MS.gene62451.t1
chr8.2 exon 14461132 14461379 14461132 ID=MS.gene62451.t1.exon2;Parent=MS.gene62451.t1
chr8.2 CDS 14461132 14461379 14461132 ID=cds.MS.gene62451.t1;Parent=MS.gene62451.t1
Gene Sequence

>MS.gene62451

ATGGTTCTTCCAGACAATATTCCAACCTGTAAGATGTCACCGCCGCAATTCACTACATCAAACAGCGATATCATTGAAGTGAGACCTCGATTTCCAATGAAAAATGAAAACTTGGAACAACATTCAACATTGTATCAACCCCATTCCTTCAAAAGGGCAAGAATTTCTGATAACAATCGTTCCAATGCTTTGATATGCCCTCCTCCAAAGATGGTTCTTCCTCCATCAAACAGAGCAGACCACGTTTTCTACAAGACTCGTGTCTGTAATAAGTCCAGACTTGGTACTTGTAGAAACGGTAAAGATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGACTGCCACCACGAAATTGGCAGGAGCTAGTTAGTTCTCGCAGCGACGGACAGCAGCAGCTGAGAAATTGGGAGGAAGATCAAAAAATGATTCACAAGATGAAGCTATGCAGGATGTATTCCAATGGTGAGAAATGTTTCTTTGGTAGTAAGTGTTATTTTCTTCATGAGGATCCTGCTAAGTTTAGGGATCATTCTGGGAAGTCAAGAGAGTGTTCTTCTATAAGCATTGGGGCTATTGGTTCTTCAAAGTCATTTGGGGCTGTGGACAAGCCAGCTAGAGGCACTTATTGGAAGACTAAGACGTGTTTCCATTGGCAGCATCAAGGGAGATGTCCCTTTGGGGAGGACTGTCAATTTGCTCATGGAGAAGCAGGTAATAATAACTCATCTTTGTGTTGATTTCCCTTTTCCCTATTTTGATTATTGATTTTGGTTTTATCATATAATTCTGCTGTACTGGTTTTGTTTTGTATAGAGAATATGTTTGTTGATTTTTTTGATGATGTGCAGAAGATCATTTTATGTTATATGATGTTCAAATTATAGTGGTTGAATGTATGTTATTTTCATTGCTGCGTATGATATTTTCATGTTTGGTATGATATTTTGTTCACACAACAAATGCTAATTCAGTTTAAAACTGTGTTGTCAAATATCGGCGGTCAAATGGCAGATTTTTAGGAAGCGCCATGGCCAATTTGTGAAGGATGGCTATGCCATGGCGTTTTATGGTGGCTTAAAATTACACATTTGATTTTCCACCATCCGTCATCGTTAACACTGGTTTAAAATTAATTTACCACTAGTGATTACTTTATCTTTGTGTTCAAATTTCCGTGGTAGCAACACATTGATATGTGAGATTTTGTGACAACTGCTATGTTTATCTAAGGTTTACATATCAGTGTTGTTAAATGGCAGCGCCAAGACAGAATAGTGTGGCAGATTTTTGACGTCAGCCATAAAAAATTTGTAAATGGATGTCTGCCACAGCGTCACCATAGGTCACAATGGTGTGTTTATATGTTGTATTTTTGGCCTTCCAGTATATTTAACGATCCTCCATGGACAACACTGTCACTGTGTTGCATATAACTTGAATGAAGTTCTGTATTTTCGTGTCAACCACATTAGGAATTTCTATTTGATAGAAATGTCTAGATTTCATAAATTAAAATAGTTAATCATCTCAATTTTATAAGGCATGATTACTATTAAATGGTGTTAAAAGTTTGTGTTTGTTACTTGACTGAAATTTTAGTAGTTTGGAGTAGTCTGCAAAAAATTTCCTTTCTGTTATCAGCTATAAAGCATGGGTACCCGTGGTGGTTACGCAAGTAGGTATCGAAATTGCTTGTCGGATAAAAAAAAGTAGGATGCTGCACTTTGGTATATGTCGATGGATATTTTGGGTATGCATCCGTGATCCAATACATAAAAATACATGTGATTTTGAACAATAAACCATTATGTTATATTCATCTTTTCCAAACCTGTTTTTCCTTTTGGTTTCTGCTGATGGGTGTGCCTATAATTTGATGTCTAACTCATCAATAGTTTTGAGGTACATTGCTCATTTGCAATGTTTTAAACTGCGACCATGTCACAATCCTTAATATTGCAGTCAAATATGGTTAATGCAGCTGCAGTTGCAGTGTCGGAGACTTGAAAAAACGTCTATGCAACAATCGTGGTCACTGTCCTTTTTTTAATATATATTGCTTGTTTGCATGTGATTACTTGTATTCGCATATTGTGAACAAAAAGTACAAGATGATTTTAACAATTTAAACTGTCTGGTTTCCATGTATCGTATTCTGACTCATTGAAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCATTCCAACTTCACGAAAAGCCTTAACAGGTTCTGCCAATGATGCATATGCACCTACCACCTTCCCTGCAAGACTTGTGGCAAAGGAAGAGGAGCAGGTTAAGAAGATGCATTTACTTTGGTTGAAATTAAACAAGATCAATCGTGTTTATGGTGATTGGATTGATGATTCACCTCTTGTTCTTCCCAACTTGCCAAGTGCAGTGGAGAACTGA
Protein sequence

>MS.gene62451.t1

MVLPDNIPTCKMSPPQFTTSNSDIIEVRPRFPMKNENLEQHSTLYQPHSFKRARISDNNRSNALICPPPKMVLPPSNRADHVFYKTRVCNKSRLGTCRNGKDCNFAHGVEELRLPPRNWQELVSSRSDGQQQLRNWEEDQKMIHKMKLCRMYSNGEKCFFGSKCYFLHEDPAKFRDHSGKSRECSSISIGAIGSSKSFGAVDKPARGTYWKTKTCFHWQHQGRCPFGEDCQFAHGEAAAVAIANSTKAIIPTSRKALTGSANDAYAPTTFPARLVAKEEEQVKKMHLLWLKLNKINRVYGDWIDDSPLVLPNLPSAVEN