Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62612.t1 | XP_003619723.2 | 90.1 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 7.30E-158 | 566.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62612.t1 | Q6IP65 | 56.9 | 260 | 112 | 0 | 43 | 302 | 28 | 287 | 2.7e-76 | 287.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62612.t1 | G7KNV7 | 90.1 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 5.3e-158 | 566.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene62612.t1 | TR | Rcd1-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62612.t1 | MTR_6g065170 | 90.093 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 0.0 | 599 |
MS.gene62612.t1 | MTR_8g106940 | 90.093 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 0.0 | 598 |
MS.gene62612.t1 | MTR_3g018640 | 60.133 | 301 | 120 | 0 | 1 | 301 | 1 | 301 | 1.66e-122 | 353 |
MS.gene62612.t1 | MTR_3g053170 | 63.441 | 279 | 102 | 0 | 38 | 316 | 26 | 304 | 3.93e-119 | 345 |
MS.gene62612.t1 | MTR_5g093460 | 58.252 | 309 | 128 | 1 | 1 | 309 | 130 | 437 | 1.38e-116 | 343 |
MS.gene62612.t1 | MTR_5g093460 | 72.519 | 131 | 35 | 1 | 34 | 164 | 1 | 130 | 3.58e-54 | 183 |
MS.gene62612.t1 | MTR_1g056470 | 57.977 | 257 | 104 | 1 | 1 | 257 | 1 | 253 | 1.70e-101 | 299 |
MS.gene62612.t1 | MTR_1g043540 | 59.167 | 120 | 48 | 1 | 139 | 258 | 6 | 124 | 4.68e-41 | 140 |
MS.gene62612.t1 | MTR_1g043500 | 50.820 | 61 | 29 | 1 | 199 | 258 | 6 | 66 | 3.45e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62612.t1 | AT3G20800 | 59.355 | 310 | 118 | 2 | 6 | 310 | 5 | 311 | 1.90e-120 | 349 |
MS.gene62612.t1 | AT5G12980 | 56.929 | 267 | 115 | 0 | 32 | 298 | 29 | 295 | 3.20e-103 | 305 |
MS.gene62612.t1 | AT2G32550 | 32.900 | 231 | 143 | 6 | 67 | 287 | 42 | 270 | 9.79e-28 | 109 |
MS.gene62612.t1 | AT2G32550 | 32.900 | 231 | 143 | 6 | 67 | 287 | 81 | 309 | 1.39e-27 | 110 |
MS.gene62612.t1 | AT2G32550 | 32.500 | 200 | 128 | 4 | 104 | 298 | 29 | 226 | 9.33e-25 | 100 |
Find 55 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCACAGTTTGAGTATTTA+AGG | 0.083275 | 4.2:-497988 | MS.gene62612:CDS |
CAGAACTTGCATCTTTATTA+TGG | 0.166706 | 4.2:-499067 | MS.gene62612:CDS |
TCTTTATTATGGAATTCTTT+TGG | 0.317731 | 4.2:-499056 | MS.gene62612:CDS |
CATAATAAAGATGCAAGTTC+TGG | 0.318259 | 4.2:+499068 | None:intergenic |
AAGGTAACCCATGACTTCTT+TGG | 0.326447 | 4.2:+497249 | None:intergenic |
GAATTATCTCGCTTAAAATA+AGG | 0.331775 | 4.2:+497230 | None:intergenic |
AGGAGAAAACAATGATATTA+TGG | 0.339445 | 4.2:-495828 | MS.gene62612:CDS |
TTTACCCACTTCCATGTTGT+TGG | 0.346974 | 4.2:+495902 | None:intergenic |
GTTCCATGCAAGCCATCGTT+TGG | 0.360758 | 4.2:+500684 | None:intergenic |
CAACGTTCTTGCACTACTTC+AGG | 0.372329 | 4.2:-498566 | MS.gene62612:intron |
TTACCCACTTCCATGTTGTT+GGG | 0.381391 | 4.2:+495903 | None:intergenic |
CACCTGCTACTAAAGGTTCC+TGG | 0.391093 | 4.2:+495852 | None:intergenic |
TGTTTAAGCAACATGGAGAT+TGG | 0.396201 | 4.2:-497202 | MS.gene62612:CDS |
TTTGCAAGTCTTGGAGTCAT+TGG | 0.412772 | 4.2:-497965 | MS.gene62612:CDS |
TTCCATGCAAGCCATCGTTT+GGG | 0.414939 | 4.2:+500685 | None:intergenic |
TGCCCAAACGATGGCTTGCA+TGG | 0.424700 | 4.2:-500687 | MS.gene62612:CDS |
TATTTAAGGTTTGCAAGTCT+TGG | 0.428903 | 4.2:-497974 | MS.gene62612:CDS |
TTTATTGGATGATGGTGGTT+TGG | 0.429087 | 4.2:-496956 | MS.gene62612:CDS |
GAAGTGGGTAAAGCACTTGC+AGG | 0.446999 | 4.2:-495891 | MS.gene62612:CDS |
TTCTTCATTGTGAGCGAATG+AGG | 0.447112 | 4.2:+500761 | None:intergenic |
TCTCCTCCACCTGCTACTAA+AGG | 0.452997 | 4.2:+495845 | None:intergenic |
CTCGTTTGTCTGATGATCGC+TGG | 0.465281 | 4.2:-496813 | MS.gene62612:intron |
GCAAGCCATCGTTTGGGCAG+TGG | 0.471268 | 4.2:+500691 | None:intergenic |
TTCATGTAATACCTTCACTA+AGG | 0.484633 | 4.2:+497940 | None:intergenic |
TCTTCGTCTGTAGCTCCTCT+TGG | 0.485469 | 4.2:-500734 | MS.gene62612:CDS |
ATTATGGAGTCGTCAACATC+AGG | 0.492978 | 4.2:-495812 | MS.gene62612:CDS |
ACAAGGATGTTGTTCTTGAA+TGG | 0.500026 | 4.2:-498315 | MS.gene62612:intron |
TCCATTGTGTTTAAGCAACA+TGG | 0.505517 | 4.2:-497209 | MS.gene62612:CDS |
AACCAGGAACCTTTAGTAGC+AGG | 0.521492 | 4.2:-495854 | MS.gene62612:CDS |
CGCTCTTCGTGTGCTCTCCA+AGG | 0.522456 | 4.2:-500621 | MS.gene62612:intron |
GTGCTAGAGTAAGAGTCGGT+GGG | 0.552042 | 4.2:+498605 | None:intergenic |
GGTTAACACCAAAGAAGTCA+TGG | 0.557731 | 4.2:-497257 | MS.gene62612:CDS |
AGAGTTTGCTAATGTAATGC+CGG | 0.558847 | 4.2:+496671 | None:intergenic |
AAGACCCAACAACATGGAAG+TGG | 0.564589 | 4.2:-495907 | MS.gene62612:CDS |
AACCTTAAATACTCAAACTG+TGG | 0.565441 | 4.2:+497986 | None:intergenic |
GGAGAATGTGAGAAAGAACC+AGG | 0.585783 | 4.2:-495870 | MS.gene62612:CDS |
AGTCATTGGCGCCTTAGTGA+AGG | 0.595063 | 4.2:-497951 | MS.gene62612:intron |
GAACCTTTAGTAGCAGGTGG+AGG | 0.599018 | 4.2:-495848 | MS.gene62612:CDS |
TGTGCTAGAGTAAGAGTCGG+TGG | 0.604538 | 4.2:+498604 | None:intergenic |
TCCATGTTGCTTAAACACAA+TGG | 0.617408 | 4.2:+497208 | None:intergenic |
CAGGAACCTTTAGTAGCAGG+TGG | 0.622718 | 4.2:-495851 | MS.gene62612:CDS |
TGCTAGAGTAAGAGTCGGTG+GGG | 0.624824 | 4.2:+498606 | None:intergenic |
ATGGTGTCTCTAAACACACT+AGG | 0.625901 | 4.2:+496645 | None:intergenic |
GTTAACACCAAAGAAGTCAT+GGG | 0.626974 | 4.2:-497256 | MS.gene62612:CDS |
TTCAGGAAGACCCAACAACA+TGG | 0.633339 | 4.2:-495913 | MS.gene62612:intron |
TGGCATCTCACTCTGAAACA+AGG | 0.635503 | 4.2:-498332 | MS.gene62612:CDS |
TCAGACAAACGAGCATAGCA+AGG | 0.637885 | 4.2:+496823 | None:intergenic |
AACTTTATAAGACGAGGTGT+AGG | 0.638935 | 4.2:+496853 | None:intergenic |
AAGAACCACTGCCCAAACGA+TGG | 0.643808 | 4.2:-500696 | MS.gene62612:CDS |
AGGAAGGGATACAAATACAA+AGG | 0.647299 | 4.2:+498028 | None:intergenic |
AGACCCAACAACATGGAAGT+GGG | 0.650091 | 4.2:-495906 | MS.gene62612:CDS |
ATTATAAACTTTATAAGACG+AGG | 0.663846 | 4.2:+496847 | None:intergenic |
GATTGTGCTAGAGTAAGAGT+CGG | 0.683303 | 4.2:+498601 | None:intergenic |
GATTGCTGAGTTCAATAACA+AGG | 0.688379 | 4.2:+500660 | None:intergenic |
GATTGAGTAGAAGCACCAAG+AGG | 0.698261 | 4.2:+500719 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | - | chr4.2:500255-500274 | MS.gene62612:intron | 0.0% |
!! | TATATATATATATATATATA+GGG | - | chr4.2:500254-500273 | MS.gene62612:intron | 0.0% |
!!! | AATTTTAAAATAATATAATT+TGG | + | chr4.2:498849-498868 | None:intergenic | 0.0% |
!!! | ATTTTAAAATAATATAATTT+GGG | + | chr4.2:498848-498867 | None:intergenic | 0.0% |
!! | AAAAAAAAATAAAGTATAAG+TGG | + | chr4.2:496535-496554 | None:intergenic | 10.0% |
!! | AAAACATATAAACATAATTT+GGG | + | chr4.2:497670-497689 | None:intergenic | 10.0% |
!! | ATATAGTTAATAATAACATT+GGG | + | chr4.2:500239-500258 | None:intergenic | 10.0% |
!! | ATCTTTAGATTAAAATTAAA+TGG | - | chr4.2:500343-500362 | MS.gene62612:intron | 10.0% |
!! | TAAATACAAAATATAATCAT+GGG | - | chr4.2:498411-498430 | MS.gene62612:intron | 10.0% |
!! | TATATAGTTAATAATAACAT+TGG | + | chr4.2:500240-500259 | None:intergenic | 10.0% |
!! | TGAATGAAATTATATATTAT+TGG | - | chr4.2:497582-497601 | MS.gene62612:intron | 10.0% |
!! | TTAAATACAAAATATAATCA+TGG | - | chr4.2:498410-498429 | MS.gene62612:intron | 10.0% |
!!! | AAAAAATTTTAAAGATACAT+CGG | + | chr4.2:496381-496400 | None:intergenic | 10.0% |
!!! | ATTTTATATTATAATTTGGT+TGG | - | chr4.2:497406-497425 | MS.gene62612:intron | 10.0% |
!!! | CTTTATTTTTTTTTAAAACT+CGG | - | chr4.2:496541-496560 | MS.gene62612:intron | 10.0% |
!!! | TATAATGCATAAAATTTTAT+TGG | - | chr4.2:499610-499629 | MS.gene62612:intron | 10.0% |
!!! | TCTTTTTATAAAAATATCTA+AGG | + | chr4.2:496828-496847 | None:intergenic | 10.0% |
!!! | TGACATTTTATATTATAATT+TGG | - | chr4.2:497402-497421 | MS.gene62612:intron | 10.0% |
!!! | TTTTAAATTTGAGTATATTA+TGG | - | chr4.2:498366-498385 | MS.gene62612:intron | 10.0% |
!!! | TTTTGATATATAAAACAATA+TGG | + | chr4.2:500166-500185 | None:intergenic | 10.0% |
!! | AAATACAAAATATAATCATG+GGG | - | chr4.2:498412-498431 | MS.gene62612:intron | 15.0% |
!! | AAATTTGTACCAATAAATTA+TGG | - | chr4.2:498747-498766 | MS.gene62612:intron | 15.0% |
!! | AATTTGTACCAATAAATTAT+GGG | - | chr4.2:498748-498767 | MS.gene62612:intron | 15.0% |
!! | ATACTTTACTTAATTATACT+TGG | - | chr4.2:496769-496788 | MS.gene62612:intron | 15.0% |
!! | GAAAACATATAAACATAATT+TGG | + | chr4.2:497671-497690 | None:intergenic | 15.0% |
!! | TAATTTGGGAAAAAATTATA+TGG | + | chr4.2:497656-497675 | None:intergenic | 15.0% |
!! | TTATGAATCAAATTTGTATA+TGG | + | chr4.2:500003-500022 | None:intergenic | 15.0% |
!! | TTTATACTAAATTAATGCTA+AGG | - | chr4.2:500521-500540 | MS.gene62612:intron | 15.0% |
!!! | AATTAACATGATTGATTTTT+AGG | + | chr4.2:498116-498135 | None:intergenic | 15.0% |
!!! | AGAAAAAAAATCTAAAATCA+TGG | + | chr4.2:499245-499264 | None:intergenic | 15.0% |
!!! | ATCTTAATTTTATCAGAAAT+TGG | + | chr4.2:496270-496289 | None:intergenic | 15.0% |
!!! | ATTGATTTTTAGGTATATTT+GGG | + | chr4.2:498106-498125 | None:intergenic | 15.0% |
!!! | CATTATTTGATATTATTTTC+AGG | - | chr4.2:500651-500670 | MS.gene62612:CDS | 15.0% |
!!! | GTGTTTTAAAAATGATTTAT+TGG | - | chr4.2:497883-497902 | MS.gene62612:intron | 15.0% |
!!! | TAATATGAAAGAAGTTTTAT+TGG | + | chr4.2:499882-499901 | None:intergenic | 15.0% |
!!! | TTATTTTTTAAAGAGCATTT+TGG | - | chr4.2:499435-499454 | MS.gene62612:intron | 15.0% |
!!! | TTTTACAATTTAAAAAAACG+AGG | - | chr4.2:497725-497744 | MS.gene62612:intron | 15.0% |
!! | AAAAATAAAGTATAAGTGGA+TGG | + | chr4.2:496531-496550 | None:intergenic | 20.0% |
!! | AAACAAGTAATTAACATATC+AGG | + | chr4.2:497270-497289 | None:intergenic | 20.0% |
!! | AAATAATATAATTTGGGCTT+TGG | + | chr4.2:498842-498861 | None:intergenic | 20.0% |
!! | AATACAAAATATAATCATGG+GGG | - | chr4.2:498413-498432 | MS.gene62612:intron | 20.0% |
!! | ACGAAATTGATTAAGAAAAA+TGG | + | chr4.2:499958-499977 | None:intergenic | 20.0% |
!! | ATAATGCATCTTATAACTTT+AGG | - | chr4.2:500546-500565 | MS.gene62612:intron | 20.0% |
!! | ATACAATGTTAATACTTGTA+TGG | - | chr4.2:500479-500498 | MS.gene62612:intron | 20.0% |
!! | ATAGAAAAGTTTATCATTTG+TGG | + | chr4.2:498153-498172 | None:intergenic | 20.0% |
!! | ATTATAAACTTTATAAGACG+AGG | + | chr4.2:499737-499756 | None:intergenic | 20.0% |
!! | CAAAAGGAAATTATTACAAA+TGG | + | chr4.2:499285-499304 | None:intergenic | 20.0% |
!! | GAAAATGTAAGTGTAAATAA+TGG | + | chr4.2:498515-498534 | None:intergenic | 20.0% |
!! | TAAATTTGAGTATATTATGG+AGG | - | chr4.2:498369-498388 | MS.gene62612:intron | 20.0% |
!! | TAATGTGACTTCAAAAAATT+AGG | - | chr4.2:497242-497261 | MS.gene62612:CDS | 20.0% |
!!! | ATATCAACTTTTTATAAGAC+TGG | + | chr4.2:499134-499153 | None:intergenic | 20.0% |
!!! | ATTATATATTATTGGCTAGT+TGG | - | chr4.2:497590-497609 | MS.gene62612:intron | 20.0% |
!!! | CATAAAATTTTATTGGATGA+TGG | - | chr4.2:499617-499636 | MS.gene62612:intron | 20.0% |
!!! | GATTGATTTTTAGGTATATT+TGG | + | chr4.2:498107-498126 | None:intergenic | 20.0% |
!!! | GTTTTAACTTTTAAGCATTT+AGG | - | chr4.2:497861-497880 | MS.gene62612:intron | 20.0% |
!!! | TAAAAGTGATTAGTGTTTTT+TGG | + | chr4.2:499010-499029 | None:intergenic | 20.0% |
!!! | TAATATCTTGTTATGTGTTA+TGG | - | chr4.2:496920-496939 | MS.gene62612:CDS | 20.0% |
!!! | TAATGTTTTTTTTCTTCTTC+AGG | - | chr4.2:497925-497944 | MS.gene62612:intron | 20.0% |
!!! | TCTTTATTATGGAATTCTTT+TGG | - | chr4.2:497525-497544 | MS.gene62612:intron | 20.0% |
!!! | TCTTTTAATGAGAAAAATCT+AGG | + | chr4.2:498459-498478 | None:intergenic | 20.0% |
!!! | TTCTATCTTTTATATTTCAG+AGG | - | chr4.2:497478-497497 | MS.gene62612:intron | 20.0% |
!!! | TTGATTTTTAGGTATATTTG+GGG | + | chr4.2:498105-498124 | None:intergenic | 20.0% |
! | AAAATGCATATTCAAGATGA+TGG | + | chr4.2:499808-499827 | None:intergenic | 25.0% |
! | AACTTCTTTCATATTAAAGC+AGG | - | chr4.2:499886-499905 | MS.gene62612:intron | 25.0% |
! | AATCACATACTCAACAAAAA+TGG | + | chr4.2:499509-499528 | None:intergenic | 25.0% |
! | ACTTCTTTCATATTAAAGCA+GGG | - | chr4.2:499887-499906 | MS.gene62612:intron | 25.0% |
! | AGAGAAACAATAGTGATAAA+AGG | - | chr4.2:497128-497147 | MS.gene62612:intron | 25.0% |
! | AGGAGAAAACAATGATATTA+TGG | - | chr4.2:500753-500772 | MS.gene62612:CDS | 25.0% |
! | ATTGGGAGACTTATAAAATT+AGG | + | chr4.2:500222-500241 | None:intergenic | 25.0% |
! | CAACATTTCCCATAATTTAT+TGG | + | chr4.2:498759-498778 | None:intergenic | 25.0% |
! | GAATTATCTCGCTTAAAATA+AGG | + | chr4.2:499354-499373 | None:intergenic | 25.0% |
! | TAAGATTATTATCTGACACA+TGG | - | chr4.2:496284-496303 | MS.gene62612:intron | 25.0% |
! | TTATGTAAATGACACATTCA+AGG | + | chr4.2:498728-498747 | None:intergenic | 25.0% |
! | TTGAATCTTGTGTTTAGTAT+AGG | - | chr4.2:498063-498082 | MS.gene62612:intron | 25.0% |
! | TTTAAGAGTTAGATTACCTA+TGG | + | chr4.2:496435-496454 | None:intergenic | 25.0% |
!! | AATTTCCTTTTGTTGATACT+TGG | - | chr4.2:499293-499312 | MS.gene62612:intron | 25.0% |
!! | ATAACTTGTGTGATATAGAT+AGG | - | chr4.2:500019-500038 | MS.gene62612:intron | 25.0% |
!! | TATTATTGCAGTACTTTTAC+AGG | - | chr4.2:497548-497567 | MS.gene62612:intron | 25.0% |
!! | TTTGTATATGGTAATGTGAA+AGG | + | chr4.2:499991-500010 | None:intergenic | 25.0% |
!!! | AAAATTTTATTGGATGATGG+TGG | - | chr4.2:499620-499639 | MS.gene62612:intron | 25.0% |
!!! | AACTTTAGGATAATAACTAG+AGG | - | chr4.2:500560-500579 | MS.gene62612:intron | 25.0% |
!!! | GAGTTACAATATAACTTGTT+AGG | - | chr4.2:499165-499184 | MS.gene62612:intron | 25.0% |
!!! | TGATTTTTAGGTATATTTGG+GGG | + | chr4.2:498104-498123 | None:intergenic | 25.0% |
!!! | TTGTCTTTTGTTTTAAGGAA+GGG | + | chr4.2:498571-498590 | None:intergenic | 25.0% |
AAAGTATAAGAACACCCATT+TGG | + | chr4.2:496756-496775 | None:intergenic | 30.0% | |
AACCTTAAATACTCAAACTG+TGG | + | chr4.2:498598-498617 | None:intergenic | 30.0% | |
AAGTATAAGAACACCCATTT+GGG | + | chr4.2:496755-496774 | None:intergenic | 30.0% | |
ACGTGTATCAATTCAAGTAT+AGG | + | chr4.2:496498-496517 | None:intergenic | 30.0% | |
AGAGAATAGACTGACAAAAT+TGG | - | chr4.2:497163-497182 | MS.gene62612:intron | 30.0% | |
ATAAGTTGCACACATTGTTA+AGG | + | chr4.2:499832-499851 | None:intergenic | 30.0% | |
ATGAGTAACTTATGTGAGAA+TGG | - | chr4.2:500305-500324 | MS.gene62612:intron | 30.0% | |
CAGAACTTGCATCTTTATTA+TGG | - | chr4.2:497514-497533 | MS.gene62612:intron | 30.0% | |
CATAATAAAGATGCAAGTTC+TGG | + | chr4.2:497516-497535 | None:intergenic | 30.0% | |
CGTGTATCAATTCAAGTATA+GGG | + | chr4.2:496497-496516 | None:intergenic | 30.0% | |
GAAAGAGAGATTACATGAAA+TGG | - | chr4.2:497057-497076 | MS.gene62612:intron | 30.0% | |
GAATACCAAGTATCAACAAA+AGG | + | chr4.2:499301-499320 | None:intergenic | 30.0% | |
TAAGTTGCACACATTGTTAA+GGG | + | chr4.2:499831-499850 | None:intergenic | 30.0% | |
TAATCGAAGATAGATTCGTA+AGG | + | chr4.2:495987-496006 | None:intergenic | 30.0% | |
TATATAGCATATGATTGACC+TGG | + | chr4.2:500439-500458 | None:intergenic | 30.0% | |
TGACAAACATACGTTAAAAC+TGG | + | chr4.2:496882-496901 | None:intergenic | 30.0% | |
TGTTAGCCATTCTAAATAGT+GGG | - | chr4.2:496128-496147 | MS.gene62612:intron | 30.0% | |
TTACCTATGGATTTAGTGAA+AGG | + | chr4.2:496422-496441 | None:intergenic | 30.0% | |
TTCATGTAATACCTTCACTA+AGG | + | chr4.2:498644-498663 | None:intergenic | 30.0% | |
TTCTATCCCACTATTTAGAA+TGG | + | chr4.2:496137-496156 | None:intergenic | 30.0% | |
TTGTTAGCCATTCTAAATAG+TGG | - | chr4.2:496127-496146 | MS.gene62612:intron | 30.0% | |
! | AATTAGGCGAAAACACTTTT+TGG | + | chr4.2:500206-500225 | None:intergenic | 30.0% |
! | TATGTTTTCACTATAGTGTG+TGG | - | chr4.2:498229-498248 | MS.gene62612:intron | 30.0% |
! | TATTTAAGGTTTGCAAGTCT+TGG | - | chr4.2:498607-498626 | MS.gene62612:CDS | 30.0% |
! | TCAGCAACAACAATATCTTT+TGG | - | chr4.2:500073-500092 | MS.gene62612:intron | 30.0% |
!! | ACATAAGAGAAAAGTGTTAG+AGG | + | chr4.2:498214-498233 | None:intergenic | 30.0% |
!! | GAGTTTGATACTTAAGTTGA+TGG | - | chr4.2:497096-497115 | MS.gene62612:intron | 30.0% |
!! | TGAGAATCGACTATTTCTAA+AGG | + | chr4.2:500615-500634 | None:intergenic | 30.0% |
!! | TGTGTTATTCTTAGTTTTCG+TGG | + | chr4.2:498800-498819 | None:intergenic | 30.0% |
!!! | CTTGTCTTTTGTTTTAAGGA+AGG | + | chr4.2:498572-498591 | None:intergenic | 30.0% |
!!! | GTGACTTGTCTTTTGTTTTA+AGG | + | chr4.2:498576-498595 | None:intergenic | 30.0% |
!!! | TTGTAGTTTTATCATGCTCT+TGG | - | chr4.2:499074-499093 | MS.gene62612:CDS | 30.0% |
AAAAACGAGGCATGATTATG+AGG | - | chr4.2:497738-497757 | MS.gene62612:intron | 35.0% | |
AAAACGAGGCATGATTATGA+GGG | - | chr4.2:497739-497758 | MS.gene62612:intron | 35.0% | |
AACCAATCTAAGTTGTTGGA+TGG | - | chr4.2:497205-497224 | MS.gene62612:CDS | 35.0% | |
AACTTTATAAGACGAGGTGT+AGG | + | chr4.2:499731-499750 | None:intergenic | 35.0% | |
AATCTCACTCAATTCTTTCC+AGG | - | chr4.2:500404-500423 | MS.gene62612:intron | 35.0% | |
ACAAGGATGTTGTTCTTGAA+TGG | - | chr4.2:498266-498285 | MS.gene62612:intron | 35.0% | |
ACTTTCAAGAGGACACAAAT+AGG | + | chr4.2:496353-496372 | None:intergenic | 35.0% | |
AGGAAGGGATACAAATACAA+AGG | + | chr4.2:498556-498575 | None:intergenic | 35.0% | |
AGTATAAGAACACCCATTTG+GGG | + | chr4.2:496754-496773 | None:intergenic | 35.0% | |
AGTCAACCAATCTAAGTTGT+TGG | - | chr4.2:497201-497220 | MS.gene62612:CDS | 35.0% | |
ATGCCTTTCACTAAATCCAT+AGG | - | chr4.2:496416-496435 | MS.gene62612:intron | 35.0% | |
CACCACAGTTTGAGTATTTA+AGG | - | chr4.2:498593-498612 | MS.gene62612:CDS | 35.0% | |
CTACAAGTCAACCAATTATC+TGG | + | chr4.2:499060-499079 | None:intergenic | 35.0% | |
CTAGTTAAGAGCCAGATAAT+TGG | - | chr4.2:499046-499065 | MS.gene62612:CDS | 35.0% | |
CTTTCAAGAGGACACAAATA+GGG | + | chr4.2:496352-496371 | None:intergenic | 35.0% | |
GATTGCTGAGTTCAATAACA+AGG | + | chr4.2:495924-495943 | None:intergenic | 35.0% | |
GTTAACACCAAAGAAGTCAT+GGG | - | chr4.2:499325-499344 | MS.gene62612:intron | 35.0% | |
TATGATTGACCTGGAAAGAA+AGG | + | chr4.2:500430-500449 | None:intergenic | 35.0% | |
TCCATTGTGTTTAAGCAACA+TGG | - | chr4.2:499372-499391 | MS.gene62612:intron | 35.0% | |
TGTTGATACTTGGTATTCAC+AGG | - | chr4.2:499303-499322 | MS.gene62612:intron | 35.0% | |
TGTTTAAGCAACATGGAGAT+TGG | - | chr4.2:499379-499398 | MS.gene62612:intron | 35.0% | |
TTCCATCCAACAACTTAGAT+TGG | + | chr4.2:497210-497229 | None:intergenic | 35.0% | |
! | AGAGGAGCACATTTAGTTTA+GGG | + | chr4.2:496470-496489 | None:intergenic | 35.0% |
! | ATCGTGGTTTTTGTGGAATT+AGG | - | chr4.2:498907-498926 | MS.gene62612:intron | 35.0% |
! | CTCTGAGAGGTATAAAAATG+AGG | - | chr4.2:497031-497050 | MS.gene62612:intron | 35.0% |
! | TCCATGTTGCTTAAACACAA+TGG | + | chr4.2:499376-499395 | None:intergenic | 35.0% |
! | TTTTCGTGGAATCATTTTCG+TGG | + | chr4.2:498786-498805 | None:intergenic | 35.0% |
!! | AGAGTTTGCTAATGTAATGC+CGG | + | chr4.2:499913-499932 | None:intergenic | 35.0% |
!! | CACATTCTCACGTTTTAATC+TGG | + | chr4.2:500370-500389 | None:intergenic | 35.0% |
!! | TTTATTGGATGATGGTGGTT+TGG | - | chr4.2:499625-499644 | MS.gene62612:intron | 35.0% |
AAACATTACTTAGCGCGTTC+AGG | + | chr4.2:497913-497932 | None:intergenic | 40.0% | |
AACATTACTTAGCGCGTTCA+GGG | + | chr4.2:497912-497931 | None:intergenic | 40.0% | |
AAGGTAACCCATGACTTCTT+TGG | + | chr4.2:499335-499354 | None:intergenic | 40.0% | |
AGATAGATTCGTAAGGACCT+TGG | + | chr4.2:495980-495999 | None:intergenic | 40.0% | |
ATGGTGTCTCTAAACACACT+AGG | + | chr4.2:499939-499958 | None:intergenic | 40.0% | |
ATTATGGAGTCGTCAACATC+AGG | - | chr4.2:500769-500788 | MS.gene62612:CDS | 40.0% | |
CATCGGTAGAAACTTTCAAG+AGG | + | chr4.2:496364-496383 | None:intergenic | 40.0% | |
CATGCAGTACTAAAATTCGC+AGG | + | chr4.2:500133-500152 | None:intergenic | 40.0% | |
CTTTCATATTAAAGCAGGGC+CGG | - | chr4.2:499891-499910 | MS.gene62612:intron | 40.0% | |
GATTGTGCTAGAGTAAGAGT+CGG | + | chr4.2:497983-498002 | None:intergenic | 40.0% | |
GGTTAACACCAAAGAAGTCA+TGG | - | chr4.2:499324-499343 | MS.gene62612:intron | 40.0% | |
TTACCCACTTCCATGTTGTT+GGG | + | chr4.2:500681-500700 | None:intergenic | 40.0% | |
TTATCTGACACATGGATCAC+AGG | - | chr4.2:496292-496311 | MS.gene62612:intron | 40.0% | |
TTCTTCATTGTGAGCGAATG+AGG | + | chr4.2:495823-495842 | None:intergenic | 40.0% | |
TTTACCCACTTCCATGTTGT+TGG | + | chr4.2:500682-500701 | None:intergenic | 40.0% | |
TTTGCAAGTCTTGGAGTCAT+TGG | - | chr4.2:498616-498635 | MS.gene62612:CDS | 40.0% | |
! | ATTACCTCTGGTGCCAATTT+CGG | + | chr4.2:496673-496692 | None:intergenic | 40.0% |
! | CTTTGCTATGGCTTAGAACA+GGG | + | chr4.2:496631-496650 | None:intergenic | 40.0% |
! | GAGAGGAGCACATTTAGTTT+AGG | + | chr4.2:496471-496490 | None:intergenic | 40.0% |
! | TTTTAGTACTGCATGGTGGT+TGG | - | chr4.2:500138-500157 | MS.gene62612:intron | 40.0% |
! | TTTTGCAGTACGTCGTGTTT+TGG | - | chr4.2:499676-499695 | MS.gene62612:intron | 40.0% |
! | TTTTGTGGAATTAGGCTTCG+TGG | - | chr4.2:498915-498934 | MS.gene62612:intron | 40.0% |
!! | CGAATTTTAGTACTGCATGG+TGG | - | chr4.2:500134-500153 | MS.gene62612:intron | 40.0% |
!! | CTGCGAATTTTAGTACTGCA+TGG | - | chr4.2:500131-500150 | MS.gene62612:intron | 40.0% |
AAAACTCGGTATCCGATCCA+AGG | - | chr4.2:496555-496574 | MS.gene62612:intron | 45.0% | |
AACCAGGAACCTTTAGTAGC+AGG | - | chr4.2:500727-500746 | MS.gene62612:CDS | 45.0% | |
AAGACCCAACAACATGGAAG+TGG | - | chr4.2:500674-500693 | MS.gene62612:CDS | 45.0% | |
AAGATCCCAAACCAACCACT+AGG | - | chr4.2:496724-496743 | MS.gene62612:intron | 45.0% | |
AATTAGGCTTCGTGGCATCT+AGG | - | chr4.2:498955-498974 | MS.gene62612:intron | 45.0% | |
AGACCCAACAACATGGAAGT+GGG | - | chr4.2:500675-500694 | MS.gene62612:CDS | 45.0% | |
AGCCATAGCAAAGCTCTGTA+TGG | - | chr4.2:496638-496657 | MS.gene62612:CDS | 45.0% | |
ATTCAAGTATAGGGCGAGAG+AGG | + | chr4.2:496488-496507 | None:intergenic | 45.0% | |
CAACGTTCTTGCACTACTTC+AGG | - | chr4.2:498015-498034 | MS.gene62612:CDS | 45.0% | |
CACGATGAGACACAATGCAA+CGG | + | chr4.2:498893-498912 | None:intergenic | 45.0% | |
CTTTGGCAGCAATCATGGTA+GGG | + | chr4.2:498825-498844 | None:intergenic | 45.0% | |
GATTTGCCAACGTCACAACA+TGG | + | chr4.2:496170-496189 | None:intergenic | 45.0% | |
GGAGAATGTGAGAAAGAACC+AGG | - | chr4.2:500711-500730 | MS.gene62612:CDS | 45.0% | |
GTCCATACAGAGCTTTGCTA+TGG | + | chr4.2:496643-496662 | None:intergenic | 45.0% | |
TCACACTTCATGACTCTGAG+AGG | - | chr4.2:497018-497037 | MS.gene62612:intron | 45.0% | |
TCAGACAAACGAGCATAGCA+AGG | + | chr4.2:499761-499780 | None:intergenic | 45.0% | |
TGTGATCCATGTTGTGACGT+TGG | - | chr4.2:496161-496180 | MS.gene62612:intron | 45.0% | |
TGTTGTGACGTTGGCAAATC+AGG | - | chr4.2:496170-496189 | MS.gene62612:intron | 45.0% | |
TTCAGGAAGACCCAACAACA+TGG | - | chr4.2:500668-500687 | MS.gene62612:CDS | 45.0% | |
TTCCATGCAAGCCATCGTTT+GGG | + | chr4.2:495899-495918 | None:intergenic | 45.0% | |
TTTGTCTGATGATCGCTGGT+TGG | - | chr4.2:499772-499791 | MS.gene62612:intron | 45.0% | |
! | GCTTTGCTATGGCTTAGAAC+AGG | + | chr4.2:496632-496651 | None:intergenic | 45.0% |
! | GTGTCTCATCGTGGTTTTTG+TGG | - | chr4.2:498900-498919 | MS.gene62612:intron | 45.0% |
!! | AGAGCGTTTTCTCGAAGATC+AGG | + | chr4.2:495946-495965 | None:intergenic | 45.0% |
!! | GATTGAGTAGAAGCACCAAG+AGG | + | chr4.2:495865-495884 | None:intergenic | 45.0% |
!! | GTTGACCTAGTGGTTGGTTT+GGG | + | chr4.2:496732-496751 | None:intergenic | 45.0% |
!! | TAGTGGTTGGTTTGGGATCT+TGG | + | chr4.2:496725-496744 | None:intergenic | 45.0% |
!! | TGGCATCTCACTCTGAAACA+AGG | - | chr4.2:498249-498268 | MS.gene62612:intron | 45.0% |
AAGAACCACTGCCCAAACGA+TGG | - | chr4.2:495885-495904 | MS.gene62612:CDS | 50.0% | |
AATTAGGCTTCGTGGCATCG+TGG | - | chr4.2:498923-498942 | MS.gene62612:intron | 50.0% | |
ACCACTAGGTCAACCCCAAA+TGG | - | chr4.2:496738-496757 | MS.gene62612:intron | 50.0% | |
AGTCATTGGCGCCTTAGTGA+AGG | - | chr4.2:498630-498649 | MS.gene62612:CDS | 50.0% | |
ATCGAACCTGAGACCTTGAG+AGG | - | chr4.2:496691-496710 | MS.gene62612:intron | 50.0% | |
ATGGACTTGCCCACCGAAAT+TGG | - | chr4.2:496657-496676 | MS.gene62612:CDS | 50.0% | |
CACCTGCTACTAAAGGTTCC+TGG | + | chr4.2:500732-500751 | None:intergenic | 50.0% | |
CAGGAACCTTTAGTAGCAGG+TGG | - | chr4.2:500730-500749 | MS.gene62612:CDS | 50.0% | |
CCACTAGGTCAACCCCAAAT+GGG | - | chr4.2:496739-496758 | MS.gene62612:intron | 50.0% | |
CGTTGCATTGTGTCTCATCG+TGG | - | chr4.2:498891-498910 | MS.gene62612:intron | 50.0% | |
CTCGTTTGTCTGATGATCGC+TGG | - | chr4.2:499768-499787 | MS.gene62612:intron | 50.0% | |
CTTTCCAGGCCTTTCTTTCC+AGG | - | chr4.2:500418-500437 | MS.gene62612:intron | 50.0% | |
GAACCTTTAGTAGCAGGTGG+AGG | - | chr4.2:500733-500752 | MS.gene62612:CDS | 50.0% | |
GCTTTGGCAGCAATCATGGT+AGG | + | chr4.2:498826-498845 | None:intergenic | 50.0% | |
GTCTCAGGTTCGATTACCTC+TGG | + | chr4.2:496685-496704 | None:intergenic | 50.0% | |
GTGCTAGAGTAAGAGTCGGT+GGG | + | chr4.2:497979-497998 | None:intergenic | 50.0% | |
GTTCCATGCAAGCCATCGTT+TGG | + | chr4.2:495900-495919 | None:intergenic | 50.0% | |
TCTCCTCCACCTGCTACTAA+AGG | + | chr4.2:500739-500758 | None:intergenic | 50.0% | |
TCTTCGTCTGTAGCTCCTCT+TGG | - | chr4.2:495847-495866 | MS.gene62612:CDS | 50.0% | |
TGCTAGAGTAAGAGTCGGTG+GGG | + | chr4.2:497978-497997 | None:intergenic | 50.0% | |
TGTGCTAGAGTAAGAGTCGG+TGG | + | chr4.2:497980-497999 | None:intergenic | 50.0% | |
TTGACCTGGAAAGAAAGGCC+TGG | + | chr4.2:500425-500444 | None:intergenic | 50.0% | |
! | GAAGTGGGTAAAGCACTTGC+AGG | - | chr4.2:500690-500709 | MS.gene62612:CDS | 50.0% |
! | GGTTGACCTAGTGGTTGGTT+TGG | + | chr4.2:496733-496752 | None:intergenic | 50.0% |
! | TCGTGGCATCGTGGTTTTTG+TGG | - | chr4.2:498932-498951 | MS.gene62612:intron | 50.0% |
! | TTGGGCTTTGGCAGCAATCA+TGG | + | chr4.2:498830-498849 | None:intergenic | 50.0% |
! | TTTGGGGTTGACCTAGTGGT+TGG | + | chr4.2:496738-496757 | None:intergenic | 50.0% |
AATCCCACTGCTCACTTGCG+GGG | - | chr4.2:496589-496608 | MS.gene62612:intron | 55.0% | |
CAATCCCACTGCTCACTTGC+GGG | - | chr4.2:496588-496607 | MS.gene62612:intron | 55.0% | |
CCAATCCCACTGCTCACTTG+CGG | - | chr4.2:496587-496606 | MS.gene62612:intron | 55.0% | |
CTTGGAGTGTGCTCCTCTCA+AGG | + | chr4.2:496707-496726 | None:intergenic | 55.0% | |
TGGTCAGTCGGTCCTTGGAT+CGG | + | chr4.2:496570-496589 | None:intergenic | 55.0% | |
TGTGCTCCTCTCAAGGTCTC+AGG | + | chr4.2:496700-496719 | None:intergenic | 55.0% | |
! | ACCTCTGGTGCCAATTTCGG+TGG | + | chr4.2:496670-496689 | None:intergenic | 55.0% |
! | CCCATTTGGGGTTGACCTAG+TGG | + | chr4.2:496742-496761 | None:intergenic | 55.0% |
! | CCTCTGGTGCCAATTTCGGT+GGG | + | chr4.2:496669-496688 | None:intergenic | 55.0% |
! | TGCCCAAACGATGGCTTGCA+TGG | - | chr4.2:495894-495913 | MS.gene62612:CDS | 55.0% |
!! | GAGCAGTGGGATTGGTCAGT+CGG | + | chr4.2:496582-496601 | None:intergenic | 55.0% |
ATCCCACTGCTCACTTGCGG+GGG | - | chr4.2:496590-496609 | MS.gene62612:intron | 60.0% | |
CCCACCGAAATTGGCACCAG+AGG | - | chr4.2:496666-496685 | MS.gene62612:CDS | 60.0% | |
CCGCAAGTGAGCAGTGGGAT+TGG | + | chr4.2:496590-496609 | None:intergenic | 60.0% | |
CGCTCTTCGTGTGCTCTCCA+AGG | - | chr4.2:495960-495979 | MS.gene62612:intron | 60.0% | |
GCAAGCCATCGTTTGGGCAG+TGG | + | chr4.2:495893-495912 | None:intergenic | 60.0% | |
!! | GGGATTGGTCAGTCGGTCCT+TGG | + | chr4.2:496575-496594 | None:intergenic | 60.0% |
TCCCACTGCTCACTTGCGGG+GGG | - | chr4.2:496591-496610 | MS.gene62612:intron | 65.0% | |
ACTGCTCACTTGCGGGGGGG+GGG | - | chr4.2:496595-496614 | MS.gene62612:intron | 70.0% | |
CACTGCTCACTTGCGGGGGG+GGG | - | chr4.2:496594-496613 | MS.gene62612:intron | 70.0% | |
CCACTGCTCACTTGCGGGGG+GGG | - | chr4.2:496593-496612 | MS.gene62612:intron | 70.0% | |
CCCACTGCTCACTTGCGGGG+GGG | - | chr4.2:496592-496611 | MS.gene62612:intron | 70.0% | |
CCCCCCCGCAAGTGAGCAGT+GGG | + | chr4.2:496595-496614 | None:intergenic | 70.0% | |
CCCCCCCCGCAAGTGAGCAG+TGG | + | chr4.2:496596-496615 | None:intergenic | 75.0% | |
CTGCTCACTTGCGGGGGGGG+GGG | - | chr4.2:496596-496615 | MS.gene62612:intron | 75.0% | |
TGCTCACTTGCGGGGGGGGG+GGG | - | chr4.2:496597-496616 | MS.gene62612:intron | 75.0% | |
! | CTCACTTGCGGGGGGGGGGG+GGG | - | chr4.2:496599-496618 | MS.gene62612:intron | 80.0% |
! | GCTCACTTGCGGGGGGGGGG+GGG | - | chr4.2:496598-496617 | MS.gene62612:intron | 80.0% |
! | TCACTTGCGGGGGGGGGGGG+GGG | - | chr4.2:496600-496619 | MS.gene62612:intron | 80.0% |
! | ACTTGCGGGGGGGGGGGGGG+GGG | - | chr4.2:496602-496621 | MS.gene62612:intron | 85.0% |
! | CACTTGCGGGGGGGGGGGGG+GGG | - | chr4.2:496601-496620 | MS.gene62612:intron | 85.0% |
! | CTTGCGGGGGGGGGGGGGGG+GGG | - | chr4.2:496603-496622 | MS.gene62612:intron | 90.0% |
! | TTGCGGGGGGGGGGGGGGGG+GGG | - | chr4.2:496604-496623 | MS.gene62612:intron | 90.0% |
! | TGCGGGGGGGGGGGGGGGGG+GGG | - | chr4.2:496605-496624 | MS.gene62612:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 495805 | 500798 | 495805 | ID=MS.gene62612 |
chr4.2 | mRNA | 495805 | 500798 | 495805 | ID=MS.gene62612.t1;Parent=MS.gene62612 |
chr4.2 | exon | 500622 | 500798 | 500622 | ID=MS.gene62612.t1.exon1;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 500622 | 500798 | 500622 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 499034 | 499105 | 499034 | ID=MS.gene62612.t1.exon2;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 499034 | 499105 | 499034 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 498567 | 498656 | 498567 | ID=MS.gene62612.t1.exon3;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 498567 | 498656 | 498567 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 498316 | 498358 | 498316 | ID=MS.gene62612.t1.exon4;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 498316 | 498358 | 498316 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 497952 | 498058 | 497952 | ID=MS.gene62612.t1.exon5;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 497952 | 498058 | 497952 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 497183 | 497278 | 497183 | ID=MS.gene62612.t1.exon6;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 497183 | 497278 | 497183 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 496814 | 497004 | 496814 | ID=MS.gene62612.t1.exon7;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 496814 | 497004 | 496814 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 496626 | 496695 | 496626 | ID=MS.gene62612.t1.exon8;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 496626 | 496695 | 496626 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
chr4.2 | exon | 495805 | 495930 | 495805 | ID=MS.gene62612.t1.exon9;Parent=MS.gene62612.t1 |
chr4.2 | CDS | 495805 | 495930 | 495805 | ID=cds.MS.gene62612.t1;Parent=MS.gene62612.t1 |
Gene Sequence |
Protein sequence |