AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62638

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62638.t1 MTR_5g088010 86.331 139 14 2 1 134 1 139 1.09e-81 243
MS.gene62638.t1 MTR_5g088060 89.552 134 14 0 1 134 218 351 1.74e-81 250
MS.gene62638.t1 MTR_5g488160 89.552 134 14 0 1 134 218 351 1.74e-81 250
MS.gene62638.t1 MTR_5g027570 65.493 142 38 3 3 134 30 170 7.34e-57 180
MS.gene62638.t1 MTR_5g027550 58.394 137 41 3 1 132 29 154 1.82e-42 143
MS.gene62638.t1 MTR_8g063600 61.842 76 27 2 53 127 103 177 1.51e-23 95.5
MS.gene62638.t1 MTR_8g063870 60.000 75 29 1 56 130 93 166 2.53e-23 94.4
MS.gene62638.t1 MTR_3g462790 63.380 71 20 3 57 125 149 215 7.80e-23 94.0
MS.gene62638.t1 MTR_5g069710 63.380 71 20 3 57 125 134 200 1.44e-22 93.2
MS.gene62638.t1 MTR_5g081860 61.333 75 27 2 50 123 119 192 1.66e-22 92.4
MS.gene62638.t1 MTR_1g111830 65.672 67 20 1 57 123 126 189 2.82e-22 91.3
MS.gene62638.t1 MTR_7g067080 55.696 79 32 1 46 124 131 206 1.45e-21 90.5
MS.gene62638.t1 MTR_1g048660 56.410 78 31 1 51 128 8 82 2.36e-21 84.7
MS.gene62638.t1 MTR_4g111975 55.128 78 30 3 53 128 135 209 7.11e-21 88.6
MS.gene62638.t1 MTR_3g104370 44.792 96 50 1 57 149 93 188 1.23e-19 84.0
MS.gene62638.t1 MTR_1g023000 68.254 63 18 1 144 206 16 76 4.47e-19 82.4
MS.gene62638.t1 MTR_1g044660 68.254 63 18 1 144 206 16 76 4.61e-19 82.4
MS.gene62638.t1 MTR_6g052140 66.667 63 19 1 144 206 16 76 8.10e-19 81.6
MS.gene62638.t1 MTR_6g052220 66.667 63 19 1 144 206 16 76 8.10e-19 81.6
MS.gene62638.t1 MTR_2g100930 55.385 65 26 1 57 121 111 172 2.32e-18 82.0
MS.gene62638.t1 MTR_4g100630 40.678 118 53 5 15 121 47 158 6.50e-18 80.5
MS.gene62638.t1 MTR_5g075760 42.241 116 64 2 12 127 64 176 1.14e-17 78.2
MS.gene62638.t1 MTR_4g107230 71.111 45 13 0 57 101 86 130 4.44e-17 77.8
MS.gene62638.t1 MTR_8g101650 53.846 65 26 1 57 121 107 167 4.81e-17 77.8
MS.gene62638.t1 MTR_5g037080 71.111 45 13 0 57 101 104 148 6.31e-17 77.8
MS.gene62638.t1 MTR_4g015130 58.333 60 22 1 65 124 3 59 1.06e-16 72.4
MS.gene62638.t1 MTR_3g070110 55.556 72 28 2 56 123 96 167 3.28e-16 74.3
MS.gene62638.t1 MTR_6g092540 53.846 65 27 1 57 121 99 160 3.63e-16 75.5
MS.gene62638.t1 MTR_2g090305 42.045 88 41 2 57 144 30 107 1.65e-15 72.0
MS.gene62638.t1 MTR_5g075790 40.952 105 52 2 32 127 81 184 1.91e-15 72.4
MS.gene62638.t1 MTR_0036s0260 40.909 88 42 2 57 144 30 107 2.24e-15 72.0
MS.gene62638.t1 MTR_1g033620 57.627 59 21 2 71 128 21 76 1.61e-14 70.1
MS.gene62638.t1 MTR_1g083180 38.889 126 56 7 23 130 13 135 4.68e-14 67.8
MS.gene62638.t1 MTR_1g111450 61.404 57 20 1 149 203 17 73 5.45e-13 65.9
MS.gene62638.t1 MTR_6g043490 53.191 47 22 0 57 103 109 155 7.98e-12 62.8
MS.gene62638.t1 MTR_8g072990 40.000 65 39 0 39 103 84 148 2.44e-11 61.2
MS.gene62638.t1 MTR_6g043480 32.941 85 54 1 57 138 109 193 3.60e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62638.t1 AT5G04760 63.158 76 25 1 48 123 92 164 4.11e-24 95.1
MS.gene62638.t1 AT5G58900 59.770 87 28 4 41 125 128 209 1.26e-23 95.5
MS.gene62638.t1 AT5G08520 62.500 72 23 2 53 123 115 183 3.45e-23 94.7
MS.gene62638.t1 AT5G01200 64.286 70 21 2 57 125 148 214 1.50e-22 92.4
MS.gene62638.t1 AT2G38090 57.317 82 30 3 50 129 135 213 7.88e-22 90.9
MS.gene62638.t1 AT3G11280 58.667 75 24 2 57 127 129 200 2.39e-21 89.0
MS.gene62638.t1 AT3G11280 58.667 75 24 2 57 127 129 200 2.39e-21 89.0
MS.gene62638.t1 AT1G49010 57.333 75 27 3 53 125 131 202 5.95e-21 89.0
MS.gene62638.t1 AT5G05790 57.500 80 26 3 53 127 128 204 7.35e-21 88.2
MS.gene62638.t1 AT5G05790 57.500 80 26 3 53 127 128 204 7.35e-21 88.2
MS.gene62638.t1 AT5G23650 54.430 79 32 2 53 130 117 192 3.15e-20 87.0
MS.gene62638.t1 AT5G61620 55.844 77 30 2 49 124 101 174 3.00e-19 84.3
MS.gene62638.t1 AT3G10580 55.882 68 25 1 57 124 97 159 8.41e-19 82.0
MS.gene62638.t1 AT3G10580 55.882 68 25 1 57 124 97 159 1.05e-18 82.4
MS.gene62638.t1 AT4G09450 57.353 68 26 1 57 124 93 157 3.79e-18 79.3
MS.gene62638.t1 AT5G47390 56.061 66 24 2 57 121 98 159 1.52e-17 80.1
MS.gene62638.t1 AT2G31610 65.079 63 20 1 144 206 16 76 2.00e-17 78.2
MS.gene62638.t1 AT5G35530 65.079 63 20 1 144 206 16 76 2.31e-17 78.2
MS.gene62638.t1 AT1G70000 67.347 49 16 0 53 101 96 144 2.93e-17 78.2
MS.gene62638.t1 AT1G70000 67.347 49 16 0 53 101 96 144 2.93e-17 78.2
MS.gene62638.t1 AT3G53870 65.079 63 20 1 144 206 16 76 3.09e-17 77.8
MS.gene62638.t1 AT5G56840 55.385 65 27 1 57 121 93 155 6.96e-17 76.6
MS.gene62638.t1 AT1G19000 45.745 94 43 3 13 101 58 148 1.18e-16 76.6
MS.gene62638.t1 AT1G19000 45.745 94 43 3 13 101 58 148 1.18e-16 76.6
MS.gene62638.t1 AT3G16350 66.667 45 15 0 57 101 139 183 2.36e-16 76.6
MS.gene62638.t1 AT1G74840 67.347 49 16 0 53 101 94 142 2.93e-16 75.1
MS.gene62638.t1 AT1G74840 67.347 49 16 0 53 101 94 142 3.42e-16 75.1
MS.gene62638.t1 AT3G10590 52.941 68 28 2 57 124 113 176 4.34e-14 68.6

Find 37 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATATCTTTCACATTT+TGG 0.113024 4.2:-825717 None:intergenic
CAATGTGTCATTCTTGTTTA+AGG 0.128626 4.2:-825776 None:intergenic
TTATTCTGGTGTTGAGTTTA+TGG 0.197121 4.2:+827123 MS.gene62638:CDS
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 4.2:-825307 None:intergenic
CTTGGGGCATGACTTTCTTC+TGG 0.281577 4.2:-825290 None:intergenic
TTTCTTCACTGAATTGAATC+TGG 0.283210 4.2:+827066 MS.gene62638:CDS
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 4.2:-825308 None:intergenic
CTTGCCGAGGATGGTTATTC+TGG 0.318525 4.2:+827109 MS.gene62638:CDS
CCACCAAAATGTGAAAGATA+TGG 0.357161 4.2:+825714 MS.gene62638:CDS
ACCACCCGACTCAATGATAT+TGG 0.374047 4.2:-825183 None:intergenic
TCATGATTTCAGTGTGCATT+CGG 0.380331 4.2:-827150 None:intergenic
CACTGAATTGAATCTGGAGT+TGG 0.402758 4.2:+827072 MS.gene62638:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 4.2:+825642 MS.gene62638:CDS
CATGATTTCAGTGTGCATTC+GGG 0.428609 4.2:-827149 None:intergenic
GAACAACAACAGGAGAAAAC+TGG 0.441684 4.2:+825158 MS.gene62638:CDS
TGTGAAAGATATGGAAAAGA+AGG 0.454324 4.2:+825723 MS.gene62638:CDS
GCATAGCATGGAACAACAAC+AGG 0.469925 4.2:+825148 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 4.2:+825297 MS.gene62638:CDS
TTGTGATGTATAGGTGTGAT+GGG 0.507575 4.2:+827427 MS.gene62638:intron
GTACACACTACATTCATTTG+TGG 0.509680 4.2:-827486 None:intergenic
ACTCGCACGCAAGTTGCTCT+TGG 0.512509 4.2:+827181 MS.gene62638:CDS
GGCACCAATATCATTGAGTC+GGG 0.516068 4.2:+825179 MS.gene62638:CDS
TTTGTGATGTATAGGTGTGA+TGG 0.522040 4.2:+827426 MS.gene62638:intron
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 4.2:+825303 MS.gene62638:CDS
ACAAGAGAGCTTGCCGAGGA+TGG 0.527128 4.2:+827100 MS.gene62638:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 4.2:+825296 MS.gene62638:CDS
GCACACTGAAATCATGATCA+AGG 0.534775 4.2:+827156 MS.gene62638:CDS
GTATAGGTGTGATGGGAAGA+AGG 0.542465 4.2:+827434 MS.gene62638:intron
GCATGGCTAGCAACTTGAGT+TGG 0.543969 4.2:-825676 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 4.2:-825306 None:intergenic
ATTAGAGTTTAGAATTGCAA+CGG 0.560593 4.2:-825207 None:intergenic
AACACCAGAATAACCATCCT+CGG 0.562935 4.2:-827113 None:intergenic
TGGCACCAATATCATTGAGT+CGG 0.577067 4.2:+825178 MS.gene62638:CDS
ACCAATATCATTGAGTCGGG+TGG 0.607339 4.2:+825182 MS.gene62638:CDS
CTTAAACAAGAATGACACAT+TGG 0.607666 4.2:+825777 MS.gene62638:CDS
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 4.2:+825291 MS.gene62638:CDS
AAGGAAAGGGCATTGGACAG+AGG 0.658250 4.2:+825310 MS.gene62638:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATTAATAACAACA+AGG - chr4.2:826600-826619 None:intergenic 10.0%
!! CTCAAAATAAATAAAAAAAT+TGG - chr4.2:827359-827378 None:intergenic 10.0%
!!! ATTTATTTTTGTTTCATTTT+GGG + chr4.2:827271-827290 MS.gene62638:intron 10.0%
!!! ATTTATTTTTTGACTTATTA+AGG + chr4.2:826477-826496 MS.gene62638:intron 10.0%
!!! TATTTATTTTTGTTTCATTT+TGG + chr4.2:827270-827289 MS.gene62638:intron 10.0%
!!! TATTTTTATTAATTGATTGA+AGG + chr4.2:826265-826284 MS.gene62638:intron 10.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr4.2:825642-825661 MS.gene62638:CDS 15.0%
!! ACAAAATTGAAAAATAACTA+CGG - chr4.2:826130-826149 None:intergenic 15.0%
!!! TGATTTTTGTAACTTTTATT+TGG + chr4.2:825884-825903 MS.gene62638:intron 15.0%
!!! TGTATTTTATTTGGTATTTT+TGG + chr4.2:825920-825939 MS.gene62638:intron 15.0%
!! AAACAAACAAGGTAAAATTA+AGG - chr4.2:826405-826424 None:intergenic 20.0%
!! AATATTACACAAAATAACCA+CGG - chr4.2:826249-826268 None:intergenic 20.0%
!! ACATTTAGTAAAAACAAACA+AGG - chr4.2:826416-826435 None:intergenic 20.0%
!! ATCACTATACTAAAAAGTAA+AGG - chr4.2:827014-827033 None:intergenic 20.0%
!! CATTTGTTTAGTTATGAATA+TGG + chr4.2:825502-825521 MS.gene62638:intron 20.0%
!! CTAAATATCTATAATCCATT+TGG + chr4.2:826898-826917 MS.gene62638:intron 20.0%
!! GTATTATGATTTACTTATGT+TGG + chr4.2:826821-826840 MS.gene62638:intron 20.0%
!! TAAAAATAACTCTCAAACAT+AGG - chr4.2:825374-825393 None:intergenic 20.0%
!! TAAAGAAAATGAGTTGTTAT+AGG + chr4.2:826507-826526 MS.gene62638:intron 20.0%
!! TAAATCATAATACCCAATAT+AGG - chr4.2:826814-826833 None:intergenic 20.0%
!! TCACTATACTAAAAAGTAAA+GGG - chr4.2:827013-827032 None:intergenic 20.0%
!!! AACTATTTTGTGTTGTATTT+TGG + chr4.2:827400-827419 MS.gene62638:intron 20.0%
!!! ACTATTTTGTGTTGTATTTT+GGG + chr4.2:827401-827420 MS.gene62638:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr4.2:825589-825608 MS.gene62638:intron 20.0%
!!! ATGTTTTTCTTTCCTATATT+GGG + chr4.2:826799-826818 MS.gene62638:intron 20.0%
!!! GAAGTGTTATATGATTTATA+TGG + chr4.2:826674-826693 MS.gene62638:intron 20.0%
!!! GTTCACTAATGTATTTTATT+TGG + chr4.2:825911-825930 MS.gene62638:intron 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr4.2:825588-825607 MS.gene62638:intron 20.0%
!!! TTGTTTTTACTAAATGTGAA+TGG + chr4.2:826419-826438 MS.gene62638:intron 20.0%
!!! TTTTTGACTTATTAAGGAAA+TGG + chr4.2:826483-826502 MS.gene62638:intron 20.0%
! ACAGATAGATATCTATTCAA+TGG - chr4.2:826198-826217 None:intergenic 25.0%
! AGAATCTTTACTAAAAGTGA+TGG + chr4.2:826084-826103 MS.gene62638:intron 25.0%
! ATATCTACAATGAGTACAAT+AGG - chr4.2:826628-826647 None:intergenic 25.0%
! CACATTCATTCTCTATATAT+AGG + chr4.2:825575-825594 MS.gene62638:intron 25.0%
!! ATTAGAGTTTAGAATTGCAA+CGG - chr4.2:825210-825229 None:intergenic 25.0%
!! CATGTTTTTCTTTCCTATAT+TGG + chr4.2:826798-826817 MS.gene62638:intron 25.0%
!! TATAATCCATTTGGTCATTT+TGG + chr4.2:826907-826926 MS.gene62638:intron 25.0%
!! TTTCCATATCTTTCACATTT+TGG - chr4.2:825720-825739 None:intergenic 25.0%
!!! CTTTGAATTTTAACTATCGT+TGG + chr4.2:827221-827240 MS.gene62638:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr4.2:825590-825609 MS.gene62638:intron 25.0%
!!! TTGGTGGTTAAAGTATTTTT+GGG - chr4.2:825701-825720 None:intergenic 25.0%
!!! TTTGGTGGTTAAAGTATTTT+TGG - chr4.2:825702-825721 None:intergenic 25.0%
AAGTTTCCAAAATGACCAAA+TGG - chr4.2:826916-826935 None:intergenic 30.0%
ACTTCTTCTGTTAATGATGT+TGG - chr4.2:826659-826678 None:intergenic 30.0%
ATTGCATCAACTAACTAAGT+AGG - chr4.2:826013-826032 None:intergenic 30.0%
CAAACGTCAAATTCTCAAAT+TGG - chr4.2:826712-826731 None:intergenic 30.0%
CAATGTAGAGTTGAAATTGT+TGG - chr4.2:825821-825840 None:intergenic 30.0%
CTTAAACAAGAATGACACAT+TGG + chr4.2:825777-825796 MS.gene62638:CDS 30.0%
GAATAGATATCTATCTGTGT+TGG + chr4.2:826200-826219 MS.gene62638:intron 30.0%
TGTGAAAGATATGGAAAAGA+AGG + chr4.2:825723-825742 MS.gene62638:CDS 30.0%
TTTCTTCACTGAATTGAATC+TGG + chr4.2:827066-827085 MS.gene62638:CDS 30.0%
! CAATGTGTCATTCTTGTTTA+AGG - chr4.2:825779-825798 None:intergenic 30.0%
! TTATTCTGGTGTTGAGTTTA+TGG + chr4.2:827123-827142 MS.gene62638:CDS 30.0%
!! ATTTGGTCATTTTGGAAACT+TGG + chr4.2:826915-826934 MS.gene62638:intron 30.0%
!! TTTGGGTTTTTGTGATGTAT+AGG + chr4.2:827418-827437 MS.gene62638:intron 30.0%
!!! TGAATTTTAACTATCGTTGG+TGG + chr4.2:827224-827243 MS.gene62638:intron 30.0%
!!! TGTTAGTCATTGACTTTTTC+CGG + chr4.2:826147-826166 MS.gene62638:intron 30.0%
AAAATCTCACTAACTCACTC+AGG + chr4.2:826373-826392 MS.gene62638:intron 35.0%
ATGTTCAATTGTCCTTCTCT+TGG - chr4.2:826958-826977 None:intergenic 35.0%
CATGGCTAAGAATATTGTTG+TGG + chr4.2:826044-826063 MS.gene62638:intron 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr4.2:825714-825733 MS.gene62638:CDS 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr4.2:825610-825629 MS.gene62638:CDS 35.0%
TACTTAATGCCTAGTGGTTT+GGG + chr4.2:826769-826788 MS.gene62638:intron 35.0%
TATCTCATAAAGCCAAGAGA+AGG + chr4.2:826943-826962 MS.gene62638:intron 35.0%
TCATGATTTCAGTGTGCATT+CGG - chr4.2:827153-827172 None:intergenic 35.0%
TGTTGAAATATACAAGTCCG+TGG + chr4.2:826229-826248 MS.gene62638:intron 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr4.2:825604-825623 MS.gene62638:CDS 35.0%
TTGTGATGTATAGGTGTGAT+GGG + chr4.2:827427-827446 MS.gene62638:intron 35.0%
TTTCAACTCTACATTGTTGC+TGG + chr4.2:825825-825844 MS.gene62638:intron 35.0%
TTTGTGATGTATAGGTGTGA+TGG + chr4.2:827426-827445 MS.gene62638:intron 35.0%
! ATGCAATACTTTTGCAAGCA+TGG + chr4.2:826026-826045 MS.gene62638:intron 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr4.2:825717-825736 None:intergenic 35.0%
!!! GGTTAAAGTATTTTTGGGCA+TGG - chr4.2:825696-825715 None:intergenic 35.0%
AACACCAGAATAACCATCCT+CGG - chr4.2:827116-827135 None:intergenic 40.0%
AAGATCAAGTGACCGATTGA+GGG - chr4.2:826324-826343 None:intergenic 40.0%
AGTGAGATTGAGAGAGAGTT+CGG - chr4.2:826347-826366 None:intergenic 40.0%
ATGAATACACCCAAACCACT+AGG - chr4.2:826781-826800 None:intergenic 40.0%
CATGATTTCAGTGTGCATTC+GGG - chr4.2:827152-827171 None:intergenic 40.0%
CTACTTAATGCCTAGTGGTT+TGG + chr4.2:826768-826787 MS.gene62638:intron 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr4.2:825158-825177 MS.gene62638:CDS 40.0%
GATACTGTGTACCACTAACA+CGG - chr4.2:826176-826195 None:intergenic 40.0%
GCACACTGAAATCATGATCA+AGG + chr4.2:827156-827175 MS.gene62638:CDS 40.0%
GGAAGATGTTATGCTAGAGA+AGG - chr4.2:826992-827011 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr4.2:825609-825628 MS.gene62638:CDS 40.0%
TGGCACCAATATCATTGAGT+CGG + chr4.2:825178-825197 MS.gene62638:CDS 40.0%
! CACTGAATTGAATCTGGAGT+TGG + chr4.2:827072-827091 MS.gene62638:CDS 40.0%
! GTTTGCTACTTAATGCCTAG+TGG + chr4.2:826763-826782 MS.gene62638:intron 40.0%
! TTGATTGAAGGTTGATCTCC+CGG + chr4.2:826277-826296 MS.gene62638:intron 40.0%
!! GATGGTAGTAGTTCTGATGT+TGG + chr4.2:826102-826121 MS.gene62638:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + chr4.2:825617-825636 MS.gene62638:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr4.2:825297-825316 MS.gene62638:CDS 45.0%
ACCAATATCATTGAGTCGGG+TGG + chr4.2:825182-825201 MS.gene62638:CDS 45.0%
ACCACCCGACTCAATGATAT+TGG - chr4.2:825186-825205 None:intergenic 45.0%
ATCGATGCAGCTATTGAGTC+CGG - chr4.2:826299-826318 None:intergenic 45.0%
GAAGATCAAGTGACCGATTG+AGG - chr4.2:826325-826344 None:intergenic 45.0%
GGCACCAATATCATTGAGTC+GGG + chr4.2:825179-825198 MS.gene62638:CDS 45.0%
TGTACCACTAACACGGTAAC+CGG - chr4.2:826169-826188 None:intergenic 45.0%
! GTATAGGTGTGATGGGAAGA+AGG + chr4.2:827434-827453 MS.gene62638:intron 45.0%
! TTTTACAAGAGAGCTTGCCG+AGG + chr4.2:827096-827115 MS.gene62638:CDS 45.0%
! TTTTCCGGTTACCGTGTTAG+TGG + chr4.2:826162-826181 MS.gene62638:intron 45.0%
!!! ATATATGAATTTTTTTTATA+TGG + chr4.2:827308-827327 MS.gene62638:intron 5.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr4.2:825291-825310 MS.gene62638:CDS 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr4.2:825310-825329 None:intergenic 50.0%
CTTGCCGAGGATGGTTATTC+TGG + chr4.2:827109-827128 MS.gene62638:CDS 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr4.2:825293-825312 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr4.2:825296-825315 MS.gene62638:CDS 50.0%
GCATGGCTAGCAACTTGAGT+TGG - chr4.2:825679-825698 None:intergenic 50.0%
TCGATGCAGCTATTGAGTCC+GGG - chr4.2:826298-826317 None:intergenic 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr4.2:825311-825330 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr4.2:825309-825328 None:intergenic 50.0%
! CTGCATCGATCTCCCTCAAT+CGG + chr4.2:826309-826328 MS.gene62638:intron 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr4.2:825310-825329 MS.gene62638:CDS 50.0%
ACAAGAGAGCTTGCCGAGGA+TGG + chr4.2:827100-827119 MS.gene62638:CDS 55.0%
ACTCGCACGCAAGTTGCTCT+TGG + chr4.2:827181-827200 MS.gene62638:CDS 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr4.2:825303-825322 MS.gene62638:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 825155 827495 825155 ID=MS.gene62638
chr4.2 mRNA 825155 827495 825155 ID=MS.gene62638.t1;Parent=MS.gene62638
chr4.2 exon 825155 825342 825155 ID=MS.gene62638.t1.exon1;Parent=MS.gene62638.t1
chr4.2 CDS 825155 825342 825155 ID=cds.MS.gene62638.t1;Parent=MS.gene62638.t1
chr4.2 exon 825597 825798 825597 ID=MS.gene62638.t1.exon2;Parent=MS.gene62638.t1
chr4.2 CDS 825597 825798 825597 ID=cds.MS.gene62638.t1;Parent=MS.gene62638.t1
chr4.2 exon 827025 827202 827025 ID=MS.gene62638.t1.exon3;Parent=MS.gene62638.t1
chr4.2 CDS 827025 827202 827025 ID=cds.MS.gene62638.t1;Parent=MS.gene62638.t1
chr4.2 exon 827440 827495 827440 ID=MS.gene62638.t1.exon4;Parent=MS.gene62638.t1
chr4.2 CDS 827440 827495 827440 ID=cds.MS.gene62638.t1;Parent=MS.gene62638.t1
Gene Sequence

>MS.gene62638

ATGGAACAACAACAGGAGAAAACTGGCACCAATATCATTGAGTCGGGTGGTGCCGTTGCAATTCTAAACTCTAATGATAATAACGTCACAACTCTAAACTCTGATGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTAAGTATGCAGTCTATGTTAATGTTAACCTATGTTTGAGAGTTATTTTTATTTTATTTTATTGAGTTAAATATGTGTTTAGTTCTTATTAAATTACAGATTTTAACGTCTATAAAATTATTCTGTTTTTTGACAATTGTTTTCATTTTATCTTTTATACATTTGTTTAGTTATGAATATGGATGCATTAGTATATTTTCTTCTCATATTATTTAGTTGAATTTGAATATTTCACATTCATTCTCTATATATAGGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAGTTGCTAGCCATGCCCAAAAATACTTTAACCACCAAAATGTGAAAGATATGGAAAAGAAGGAGAAAAAAAGAAAAAGTATTCACGACACAACCTTAAACAAGAATGACACATTGGTCACTAATGTATTTTAATCCAACAATTTCAACTCTACATTGTTGCTGGTATGAATCAGAACTTATTTATGTGAAATTTGATTATTGATTTTTGTAACTTTTATTTGGAACTGTTCACTAATGTATTTTATTTGGTATTTTTGGTTATGTTGATTTCTTTTTCTTCTCAATTAATTGCTTTGTTCGATGCTAGCTAAATGTATGTATCACACCTACTTAGTTAGTTGATGCAATACTTTTGCAAGCATGGCTAAGAATATTGTTGTGGCTAAGAATAAGTATGTAAGAATCTTTACTAAAAGTGATGGTAGTAGTTCTGATGTTGGTGCCGTAGTTATTTTTCAATTTTGTTAGTCATTGACTTTTTCCGGTTACCGTGTTAGTGGTACACAGTATCCATTGAATAGATATCTATCTGTGTTGGTTATTATGTTGAAATATACAAGTCCGTGGTTATTTTGTGTAATATTTTTATTAATTGATTGAAGGTTGATCTCCCGGACTCAATAGCTGCATCGATCTCCCTCAATCGGTCACTTGATCTTCCGAACTCTCTCTCAATCTCACTACTCTCAAAATCTCACTAACTCACTCAGGTATTAGCCTTAATTTTACCTTGTTTGTTTTTACTAAATGTGAATGGTTCGATTTATTTACTGTGATTTAGTGATGTAGTGAATTTATTTTTTGACTTATTAAGGAAATGGATAAAGAAAATGAGTTGTTATAGGTTTGACTTAGTTTTCTTCTTTTACTTTGACTTGTTTATACTATATGTATTTTCAAAGATAGTCATATCCTTGTTGTTATTAATTAATTATATTAACCTATTGTACTCATTGTAGATATTCAATGATCCAACATCATTAACAGAAGAAGTGTTATATGATTTATATGGTATGTTTCAATGCCAATTTGAGAATTTGACGTTTGTTGAGATATTAGAATTTTGAATGAACTTGTAGTTTGCTACTTAATGCCTAGTGGTTTGGGTGTATTCATGTTTTTCTTTCCTATATTGGGTATTATGATTTACTTATGTTGGACTTTGAAATGATTTTCATGAACTTATTTATGTAGTATTTGCGTTTGTGCACGTCTAAATATCTATAATCCATTTGGTCATTTTGGAAACTTGGTTGACTATCTCATAAAGCCAAGAGAAGGACAATTGAACATGTTAATTCACACCTTCTCTAGCATAACATCTTCCCTTTACTTTTTAGTATAGTGATGCTTATATCTTACATTTGCTCGTTAAGAGAGTTTTCTTCACTGAATTGAATCTGGAGTTGGTTTTTACAAGAGAGCTTGCCGAGGATGGTTATTCTGGTGTTGAGTTTATGGTTACCCGAATGCACACTGAAATCATGATCAAGGCTACTCGCACGCAAGTTGCTCTTGGTAAGTGATTTCATCAATCTTTGAATTTTAACTATCGTTGGTGGAATCTAATTTGTGATTATGATTTTATTTATTTTTGTTTCATTTTGGGTTTTTTCTTTTATGATATATGAATTTTTTTTATATGGATATACGATTTTGATTTGTGATATACCAATTTTTTTATTTATTTTGAGTTTGATCATATTATATATTATAACTATTTTGTGTTGTATTTTGGGTTTTTGTGATGTATAGGTGTGATGGGAAGAAGGATTAGTGAGCTGATCTCTGTCATACAAAACCACAAATGA
Protein sequence

>MS.gene62638.t1

MEQQQEKTGTNIIESGGAVAILNSNDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQVASHAQKYFNHQNVKDMEKKEKKRKSIHDTTLNKNDTLYSDAYILHLLVKRVFFTELNLELVFTRELAEDGYSGVEFMVTRMHTEIMIKATRTQVALGVMGRRISELISVIQNHK