Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62657.t1 | XP_003630992.1 | 97.9 | 241 | 5 | 0 | 1 | 241 | 1 | 241 | 1.80E-137 | 498.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62657.t1 | G7LBI1 | 97.9 | 241 | 5 | 0 | 1 | 241 | 1 | 241 | 1.3e-137 | 498.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene62657.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62657.t1 | MTR_8g105930 | 97.925 | 241 | 5 | 0 | 1 | 241 | 1 | 241 | 4.36e-180 | 493 |
MS.gene62657.t1 | MTR_1g032880 | 41.837 | 196 | 66 | 2 | 46 | 241 | 16 | 163 | 9.27e-41 | 137 |
MS.gene62657.t1 | MTR_4g116300 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 6.13e-21 | 88.6 |
MS.gene62657.t1 | MTR_2g055210 | 30.345 | 145 | 78 | 4 | 15 | 158 | 104 | 226 | 1.76e-19 | 86.3 |
MS.gene62657.t1 | MTR_4g094680 | 32.738 | 168 | 95 | 5 | 15 | 181 | 24 | 174 | 3.26e-19 | 83.6 |
MS.gene62657.t1 | MTR_1g062160 | 35.374 | 147 | 71 | 6 | 15 | 158 | 9 | 134 | 6.30e-19 | 82.0 |
MS.gene62657.t1 | MTR_5g030130 | 35.616 | 146 | 71 | 5 | 15 | 158 | 37 | 161 | 2.61e-17 | 78.6 |
MS.gene62657.t1 | MTR_5g030130 | 34.932 | 146 | 72 | 5 | 15 | 158 | 37 | 161 | 5.95e-17 | 76.6 |
MS.gene62657.t1 | MTR_7g102790 | 33.974 | 156 | 77 | 6 | 15 | 165 | 9 | 143 | 6.19e-17 | 77.0 |
MS.gene62657.t1 | MTR_4g078170 | 34.932 | 146 | 72 | 5 | 15 | 158 | 17 | 141 | 7.82e-17 | 77.0 |
MS.gene62657.t1 | MTR_2g036170 | 33.793 | 145 | 68 | 4 | 15 | 158 | 39 | 156 | 8.57e-17 | 77.4 |
MS.gene62657.t1 | MTR_8g066820 | 33.951 | 162 | 82 | 6 | 1 | 158 | 19 | 159 | 1.84e-16 | 76.3 |
MS.gene62657.t1 | MTR_5g007230 | 32.877 | 146 | 75 | 5 | 15 | 158 | 23 | 147 | 1.06e-15 | 73.6 |
MS.gene62657.t1 | MTR_2g084510 | 31.613 | 155 | 89 | 5 | 15 | 165 | 5 | 146 | 1.01e-14 | 71.6 |
MS.gene62657.t1 | MTR_2g084525 | 30.323 | 155 | 91 | 5 | 15 | 165 | 6 | 147 | 5.38e-14 | 69.7 |
MS.gene62657.t1 | MTR_2g060540 | 29.932 | 147 | 86 | 5 | 15 | 157 | 12 | 145 | 3.52e-12 | 62.8 |
MS.gene62657.t1 | MTR_2g060500 | 29.932 | 147 | 86 | 5 | 15 | 157 | 12 | 145 | 4.31e-12 | 62.4 |
MS.gene62657.t1 | MTR_8g097310 | 31.250 | 112 | 54 | 3 | 50 | 158 | 4 | 95 | 2.51e-11 | 60.5 |
MS.gene62657.t1 | MTR_2g084495 | 34.737 | 95 | 58 | 3 | 15 | 105 | 6 | 100 | 2.85e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62657.t1 | AT2G01818 | 42.331 | 163 | 73 | 5 | 5 | 161 | 2 | 149 | 7.09e-36 | 127 |
MS.gene62657.t1 | AT3G60670 | 33.333 | 147 | 76 | 3 | 15 | 160 | 9 | 134 | 3.16e-22 | 92.0 |
MS.gene62657.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.03e-20 | 88.2 |
MS.gene62657.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.03e-20 | 88.2 |
MS.gene62657.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 5 | 128 | 1.04e-20 | 88.2 |
MS.gene62657.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 18 | 143 | 1.32e-18 | 82.4 |
MS.gene62657.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 15 | 140 | 1.41e-18 | 82.0 |
MS.gene62657.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 18 | 223 | 5.31e-18 | 80.1 |
MS.gene62657.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 11 | 216 | 6.56e-18 | 79.7 |
MS.gene62657.t1 | AT4G17900 | 32.515 | 163 | 86 | 5 | 1 | 159 | 20 | 162 | 9.61e-18 | 79.7 |
MS.gene62657.t1 | AT1G76590 | 38.060 | 134 | 61 | 4 | 27 | 159 | 33 | 145 | 1.89e-17 | 79.3 |
MS.gene62657.t1 | AT1G31040 | 30.675 | 163 | 90 | 3 | 15 | 176 | 21 | 161 | 6.34e-17 | 77.8 |
MS.gene62657.t1 | AT4G17900 | 33.333 | 147 | 76 | 4 | 15 | 159 | 22 | 148 | 6.72e-17 | 77.0 |
MS.gene62657.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 6.16e-16 | 73.6 |
MS.gene62657.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 6.16e-16 | 73.6 |
MS.gene62657.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 1.83e-15 | 72.8 |
MS.gene62657.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 1.83e-15 | 72.8 |
MS.gene62657.t1 | AT5G46710 | 31.902 | 163 | 84 | 5 | 1 | 161 | 21 | 158 | 2.14e-15 | 72.0 |
MS.gene62657.t1 | AT2G01818 | 39.175 | 97 | 44 | 2 | 65 | 161 | 4 | 85 | 3.12e-15 | 71.2 |
MS.gene62657.t1 | AT5G46710 | 31.677 | 161 | 83 | 5 | 1 | 159 | 21 | 156 | 6.64e-15 | 72.0 |
MS.gene62657.t1 | AT1G32700 | 31.447 | 159 | 86 | 5 | 2 | 158 | 1 | 138 | 8.27e-15 | 71.2 |
MS.gene62657.t1 | AT5G46710 | 31.447 | 159 | 82 | 5 | 3 | 159 | 7 | 140 | 2.06e-14 | 70.1 |
MS.gene62657.t1 | AT1G32700 | 35.294 | 119 | 55 | 4 | 41 | 158 | 2 | 99 | 6.83e-12 | 62.4 |
Find 44 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGATAAGTTGCTTTCTT+TGG | 0.204312 | 4.2:+1068150 | None:intergenic |
ATGATTCCGGTTCCGAATTA+AGG | 0.235495 | 4.2:+1067828 | None:intergenic |
CTTTGACTGCTCAAATATTC+AGG | 0.261064 | 4.2:-1068657 | MS.gene62657:intron |
CAATCTCTATTCCTTTCTTT+TGG | 0.279770 | 4.2:+1068881 | None:intergenic |
TGTAAATCTGAAACCTTCTA+TGG | 0.316103 | 4.2:+1068726 | None:intergenic |
GTCCAAATCATCACTCAAAA+AGG | 0.343718 | 4.2:-1067934 | MS.gene62657:CDS |
GATTTACAGATATTCCTATC+AGG | 0.363443 | 4.2:-1068711 | MS.gene62657:CDS |
TGATTTGGACCTTGGCTTTG+AGG | 0.368181 | 4.2:+1067947 | None:intergenic |
TTGAGTGATGATTTGGACCT+TGG | 0.380468 | 4.2:+1067939 | None:intergenic |
TATGACTGATAACCTTAATT+CGG | 0.380930 | 4.2:-1067840 | MS.gene62657:CDS |
AAGCTCATTCTATCCATAGA+AGG | 0.396408 | 4.2:-1068739 | MS.gene62657:CDS |
GCTTCAGAAATAGATGATTC+CGG | 0.410307 | 4.2:+1067815 | None:intergenic |
CAAAAGAAAGGAATAGAGAT+TGG | 0.426289 | 4.2:-1068880 | MS.gene62657:CDS |
CTTACATATCGAATAAAGAT+AGG | 0.448689 | 4.2:-1068243 | MS.gene62657:CDS |
TGATAACCTTAATTCGGAAC+CGG | 0.455008 | 4.2:-1067834 | MS.gene62657:CDS |
CATAGTAAAGTCAATAGCTT+CGG | 0.480348 | 4.2:+1067859 | None:intergenic |
GACTTATAGATCGGAGGCCG+AGG | 0.481284 | 4.2:+1068205 | None:intergenic |
ATGGCGGAAAACATCCTGAT+AGG | 0.486299 | 4.2:+1068697 | None:intergenic |
GCTCTTATGAATAGTAGCTC+TGG | 0.499499 | 4.2:-1068851 | MS.gene62657:CDS |
TTATCAGCTAGATTTAAGTC+AGG | 0.519647 | 4.2:-1068136 | MS.gene62657:CDS |
AGGATCAATCACCAAAAGAA+AGG | 0.527569 | 4.2:-1068892 | MS.gene62657:CDS |
CCGATCTATAAGTCTAAAGT+TGG | 0.532512 | 4.2:-1068196 | MS.gene62657:CDS |
TGAAGCTGAGCCATGTGGGC+GGG | 0.537407 | 4.2:-1067798 | MS.gene62657:CDS |
AGTGCTTCTGCAGCTCAGAA+TGG | 0.561001 | 4.2:+1068678 | None:intergenic |
TGATGATACATCTACCACTT+TGG | 0.561847 | 4.2:+1067891 | None:intergenic |
CCAACTTTAGACTTATAGAT+CGG | 0.562220 | 4.2:+1068196 | None:intergenic |
GGCAGTACATGTGAAGAATG+TGG | 0.570625 | 4.2:-1068112 | MS.gene62657:CDS |
TAAGAAACGAAAACAAAGAC+AGG | 0.585409 | 4.2:+1067725 | None:intergenic |
GCAGTACATGTGAAGAATGT+GGG | 0.588854 | 4.2:-1068111 | MS.gene62657:CDS |
CTGAAGCTGAGCCATGTGGG+CGG | 0.592373 | 4.2:-1067799 | MS.gene62657:CDS |
TCAGCTAGATTTAAGTCAGG+AGG | 0.597898 | 4.2:-1068133 | MS.gene62657:CDS |
CTGGTGCTCAATTATATGCA+AGG | 0.606595 | 4.2:-1068062 | MS.gene62657:intron |
GTTGACTCTTTCAACCAAAG+TGG | 0.608258 | 4.2:-1067905 | MS.gene62657:CDS |
GGATTGTGCATCTCAAACCT+CGG | 0.608993 | 4.2:-1068222 | MS.gene62657:CDS |
TACAAGATGAGCATAGTCGC+TGG | 0.613510 | 4.2:-1068081 | MS.gene62657:CDS |
ATAGGGGAGCCTCAAAGCCA+AGG | 0.624380 | 4.2:-1067956 | MS.gene62657:CDS |
TTTCTGAAGCTGAGCCATGT+GGG | 0.625236 | 4.2:-1067802 | MS.gene62657:CDS |
ACAACTTCAACCCGCCCACA+TGG | 0.636500 | 4.2:+1067788 | None:intergenic |
AAAGACAGGCCTCTGAGGAG+TGG | 0.638363 | 4.2:+1067739 | None:intergenic |
GCTTCTGCAGCTCAGAATGG+CGG | 0.645960 | 4.2:+1068681 | None:intergenic |
ATTGTGCTGTTAGATTCTGT+AGG | 0.654870 | 4.2:-1068772 | MS.gene62657:CDS |
ATTTCTGAAGCTGAGCCATG+TGG | 0.657682 | 4.2:-1067803 | MS.gene62657:CDS |
ACTTTAGACTTATAGATCGG+AGG | 0.659735 | 4.2:+1068199 | None:intergenic |
AAAACAAAGACAGGCCTCTG+AGG | 0.661748 | 4.2:+1067734 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAAATATGAATCAAA+TGG | + | chr4.2:1067915-1067934 | None:intergenic | 10.0% |
!!! | TTTATTTTTGTTTTAAATGT+TGG | - | chr4.2:1067927-1067946 | MS.gene62657:CDS | 10.0% |
!! | AATAAACACAATTTATTTCA+TGG | + | chr4.2:1068685-1068704 | None:intergenic | 15.0% |
!! | TTATTCAATGTAATTTCAAT+AGG | + | chr4.2:1068619-1068638 | None:intergenic | 15.0% |
!! | AGTTTATGATCAATAACAAT+TGG | + | chr4.2:1068757-1068776 | None:intergenic | 20.0% |
!!! | ATTGAATAAATTTTCCATGT+GGG | - | chr4.2:1068630-1068649 | MS.gene62657:intron | 20.0% |
!!! | TATTTTGAATATCTGAGATT+AGG | - | chr4.2:1068029-1068048 | MS.gene62657:intron | 20.0% |
!!! | TGTTTTGATTTGTTTTAATC+TGG | - | chr4.2:1068544-1068563 | MS.gene62657:intron | 20.0% |
! | AATTTATAATTCAACCCACA+TGG | + | chr4.2:1068647-1068666 | None:intergenic | 25.0% |
! | CAAAACTTTATAAGAATCCA+TGG | + | chr4.2:1067761-1067780 | None:intergenic | 25.0% |
! | CTTACATATCGAATAAAGAT+AGG | - | chr4.2:1068832-1068851 | MS.gene62657:CDS | 25.0% |
! | TATGACTGATAACCTTAATT+CGG | - | chr4.2:1069235-1069254 | MS.gene62657:intron | 25.0% |
!! | ACAAACATGCTCTTATTTAA+TGG | - | chr4.2:1069038-1069057 | MS.gene62657:intron | 25.0% |
!! | CATTGAATAAATTTTCCATG+TGG | - | chr4.2:1068629-1068648 | MS.gene62657:intron | 25.0% |
!!! | TGATTCTGAATTGATTTTGT+GGG | - | chr4.2:1068128-1068147 | MS.gene62657:CDS | 25.0% |
!!! | TTGATTTGTTTTAATCTGGT+TGG | - | chr4.2:1068548-1068567 | MS.gene62657:intron | 25.0% |
!!! | TTTCTTTGGATTTTGATTCA+GGG | + | chr4.2:1068914-1068933 | None:intergenic | 25.0% |
AACAAACAATGACAGTACAA+AGG | + | chr4.2:1068711-1068730 | None:intergenic | 30.0% | |
AACGAAATCAGAATCAGAAT+AGG | + | chr4.2:1067792-1067811 | None:intergenic | 30.0% | |
CAAAAGAAAGGAATAGAGAT+TGG | - | chr4.2:1068195-1068214 | MS.gene62657:CDS | 30.0% | |
CATAGTAAAGTCAATAGCTT+CGG | + | chr4.2:1069219-1069238 | None:intergenic | 30.0% | |
CCAACTTTAGACTTATAGAT+CGG | + | chr4.2:1068882-1068901 | None:intergenic | 30.0% | |
GAAATTTGCATGTGAAGATT+TGG | - | chr4.2:1067991-1068010 | MS.gene62657:intron | 30.0% | |
GATAGACTTTAATGATCTGA+TGG | - | chr4.2:1068572-1068591 | MS.gene62657:intron | 30.0% | |
GATTTACAGATATTCCTATC+AGG | - | chr4.2:1068364-1068383 | MS.gene62657:intron | 30.0% | |
TAAGAAACGAAAACAAAGAC+AGG | + | chr4.2:1069353-1069372 | None:intergenic | 30.0% | |
TAAGAATCCATGGAAAAAAC+AGG | + | chr4.2:1067751-1067770 | None:intergenic | 30.0% | |
TCAATAGGTTCAACCATTAA+TGG | + | chr4.2:1068604-1068623 | None:intergenic | 30.0% | |
TTATCAGCTAGATTTAAGTC+AGG | - | chr4.2:1068939-1068958 | MS.gene62657:intron | 30.0% | |
! | CAATCTCTATTCCTTTCTTT+TGG | + | chr4.2:1068197-1068216 | None:intergenic | 30.0% |
! | GAATATCTGAGATTAGGTTT+AGG | - | chr4.2:1068035-1068054 | MS.gene62657:intron | 30.0% |
! | TGTAAATCTGAAACCTTCTA+TGG | + | chr4.2:1068352-1068371 | None:intergenic | 30.0% |
!! | CTGATTCTGAATTGATTTTG+TGG | - | chr4.2:1068127-1068146 | MS.gene62657:CDS | 30.0% |
!!! | CTTTCTTTGGATTTTGATTC+AGG | + | chr4.2:1068915-1068934 | None:intergenic | 30.0% |
!!! | TCAATTTCCTGTTTTTTCCA+TGG | - | chr4.2:1067741-1067760 | MS.gene62657:CDS | 30.0% |
!!! | TGAATAATGATGGATTTTGC+AGG | - | chr4.2:1068154-1068173 | MS.gene62657:CDS | 30.0% |
AAGCTCATTCTATCCATAGA+AGG | - | chr4.2:1068336-1068355 | MS.gene62657:intron | 35.0% | |
ACTTTAGACTTATAGATCGG+AGG | + | chr4.2:1068879-1068898 | None:intergenic | 35.0% | |
AGGATCAATCACCAAAAGAA+AGG | - | chr4.2:1068183-1068202 | MS.gene62657:CDS | 35.0% | |
CGTACAATTGTTCCATGATT+TGG | - | chr4.2:1068805-1068824 | MS.gene62657:CDS | 35.0% | |
CTTTGACTGCTCAAATATTC+AGG | - | chr4.2:1068418-1068437 | MS.gene62657:intron | 35.0% | |
GCTTCAGAAATAGATGATTC+CGG | + | chr4.2:1069263-1069282 | None:intergenic | 35.0% | |
GTCCAAATCATCACTCAAAA+AGG | - | chr4.2:1069141-1069160 | MS.gene62657:intron | 35.0% | |
TATGTAAGTCTGCCAAATCA+TGG | + | chr4.2:1068820-1068839 | None:intergenic | 35.0% | |
TGATAACCTTAATTCGGAAC+CGG | - | chr4.2:1069241-1069260 | MS.gene62657:intron | 35.0% | |
TGATGATACATCTACCACTT+TGG | + | chr4.2:1069187-1069206 | None:intergenic | 35.0% | |
! | AAGTCAATAGCTTCGGTTTT+CGG | + | chr4.2:1069212-1069231 | None:intergenic | 35.0% |
! | AGCTGATAAGTTGCTTTCTT+TGG | + | chr4.2:1068928-1068947 | None:intergenic | 35.0% |
! | ATCATGTGCTGTTGTTAGAT+AGG | - | chr4.2:1069101-1069120 | MS.gene62657:intron | 35.0% |
! | ATTGTGCTGTTAGATTCTGT+AGG | - | chr4.2:1068303-1068322 | MS.gene62657:intron | 35.0% |
! | CCGATCTATAAGTCTAAAGT+TGG | - | chr4.2:1068879-1068898 | MS.gene62657:CDS | 35.0% |
! | CTGATGGACATTACCATTAA+TGG | - | chr4.2:1068588-1068607 | MS.gene62657:intron | 35.0% |
! | TCATGTGCTGTTGTTAGATA+GGG | - | chr4.2:1069102-1069121 | MS.gene62657:intron | 35.0% |
!! | TTGTGGGTACTGAATAATGA+TGG | - | chr4.2:1068144-1068163 | MS.gene62657:CDS | 35.0% |
!!! | ATAATGATGGATTTTGCAGG+TGG | - | chr4.2:1068157-1068176 | MS.gene62657:CDS | 35.0% |
!!! | CTCCTTTTTGAGTGATGATT+TGG | + | chr4.2:1069146-1069165 | None:intergenic | 35.0% |
!!! | TAATGATGGATTTTGCAGGT+GGG | - | chr4.2:1068158-1068177 | MS.gene62657:CDS | 35.0% |
ATGATTCCGGTTCCGAATTA+AGG | + | chr4.2:1069250-1069269 | None:intergenic | 40.0% | |
CTGGTGCTCAATTATATGCA+AGG | - | chr4.2:1069013-1069032 | MS.gene62657:intron | 40.0% | |
GCAGTACATGTGAAGAATGT+GGG | - | chr4.2:1068964-1068983 | MS.gene62657:intron | 40.0% | |
GCTCTTATGAATAGTAGCTC+TGG | - | chr4.2:1068224-1068243 | MS.gene62657:CDS | 40.0% | |
TCAGCTAGATTTAAGTCAGG+AGG | - | chr4.2:1068942-1068961 | MS.gene62657:intron | 40.0% | |
! | CATGTGCTGTTGTTAGATAG+GGG | - | chr4.2:1069103-1069122 | MS.gene62657:intron | 40.0% |
! | GTTGACTCTTTCAACCAAAG+TGG | - | chr4.2:1069170-1069189 | MS.gene62657:intron | 40.0% |
! | TTGAGTGATGATTTGGACCT+TGG | + | chr4.2:1069139-1069158 | None:intergenic | 40.0% |
!!! | AATGATGGATTTTGCAGGTG+GGG | - | chr4.2:1068159-1068178 | MS.gene62657:CDS | 40.0% |
AAAACAAAGACAGGCCTCTG+AGG | + | chr4.2:1069344-1069363 | None:intergenic | 45.0% | |
GGATTGTGCATCTCAAACCT+CGG | - | chr4.2:1068853-1068872 | MS.gene62657:CDS | 45.0% | |
GGCAGTACATGTGAAGAATG+TGG | - | chr4.2:1068963-1068982 | MS.gene62657:intron | 45.0% | |
TACAAGATGAGCATAGTCGC+TGG | - | chr4.2:1068994-1069013 | MS.gene62657:intron | 45.0% | |
! | ATGGCGGAAAACATCCTGAT+AGG | + | chr4.2:1068381-1068400 | None:intergenic | 45.0% |
! | TCTGAGGAGTGGTTTTTCTC+GGG | + | chr4.2:1069328-1069347 | None:intergenic | 45.0% |
!! | ATTTCTGAAGCTGAGCCATG+TGG | - | chr4.2:1069272-1069291 | MS.gene62657:intron | 45.0% |
!! | CTCTGAGGAGTGGTTTTTCT+CGG | + | chr4.2:1069329-1069348 | None:intergenic | 45.0% |
!! | TGATTTGGACCTTGGCTTTG+AGG | + | chr4.2:1069131-1069150 | None:intergenic | 45.0% |
!! | TTTCTGAAGCTGAGCCATGT+GGG | - | chr4.2:1069273-1069292 | MS.gene62657:intron | 45.0% |
AGTGCTTCTGCAGCTCAGAA+TGG | + | chr4.2:1068400-1068419 | None:intergenic | 50.0% | |
CGAGAAAAACCACTCCTCAG+AGG | - | chr4.2:1069327-1069346 | MS.gene62657:intron | 50.0% | |
! | ATGGATTTTGCAGGTGGGGA+AGG | - | chr4.2:1068163-1068182 | MS.gene62657:CDS | 50.0% |
ACAACTTCAACCCGCCCACA+TGG | + | chr4.2:1069290-1069309 | None:intergenic | 55.0% | |
ATAGGGGAGCCTCAAAGCCA+AGG | - | chr4.2:1069119-1069138 | MS.gene62657:intron | 55.0% | |
GACTTATAGATCGGAGGCCG+AGG | + | chr4.2:1068873-1068892 | None:intergenic | 55.0% | |
GCTTCTGCAGCTCAGAATGG+CGG | + | chr4.2:1068397-1068416 | None:intergenic | 55.0% | |
! | AAAGACAGGCCTCTGAGGAG+TGG | + | chr4.2:1069339-1069358 | None:intergenic | 55.0% |
CTGAAGCTGAGCCATGTGGG+CGG | - | chr4.2:1069276-1069295 | MS.gene62657:intron | 60.0% | |
TGAAGCTGAGCCATGTGGGC+GGG | - | chr4.2:1069277-1069296 | MS.gene62657:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 1067724 | 1069373 | 1067724 | ID=MS.gene62657 |
chr4.2 | mRNA | 1067724 | 1069373 | 1067724 | ID=MS.gene62657.t1;Parent=MS.gene62657 |
chr4.2 | exon | 1069371 | 1069373 | 1069371 | ID=MS.gene62657.t1.exon1;Parent=MS.gene62657.t1 |
chr4.2 | CDS | 1069371 | 1069373 | 1069371 | ID=cds.MS.gene62657.t1;Parent=MS.gene62657.t1 |
chr4.2 | exon | 1068658 | 1068921 | 1068658 | ID=MS.gene62657.t1.exon2;Parent=MS.gene62657.t1 |
chr4.2 | CDS | 1068658 | 1068921 | 1068658 | ID=cds.MS.gene62657.t1;Parent=MS.gene62657.t1 |
chr4.2 | exon | 1068063 | 1068266 | 1068063 | ID=MS.gene62657.t1.exon3;Parent=MS.gene62657.t1 |
chr4.2 | CDS | 1068063 | 1068266 | 1068063 | ID=cds.MS.gene62657.t1;Parent=MS.gene62657.t1 |
chr4.2 | exon | 1067724 | 1067978 | 1067724 | ID=MS.gene62657.t1.exon4;Parent=MS.gene62657.t1 |
chr4.2 | CDS | 1067724 | 1067978 | 1067724 | ID=cds.MS.gene62657.t1;Parent=MS.gene62657.t1 |
Gene Sequence |
Protein sequence |