Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62794.t1 | XP_024634520.1 | 77.1 | 754 | 25 | 1 | 1 | 606 | 1 | 754 | 0.00E+00 | 1104.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62794.t1 | Q9SZL8 | 27.6 | 586 | 253 | 9 | 27 | 448 | 59 | 637 | 2.0e-64 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62794.t1 | A0A2Z6P1T9 | 59.7 | 735 | 146 | 3 | 20 | 605 | 2 | 735 | 2.2e-237 | 831.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62794.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62794.t1 | MTR_6g048540 | 65.812 | 117 | 40 | 0 | 420 | 536 | 106 | 222 | 4.36e-47 | 166 |
| MS.gene62794.t1 | MTR_6g048540 | 59.055 | 127 | 49 | 2 | 14 | 137 | 5 | 131 | 1.86e-42 | 153 |
| MS.gene62794.t1 | MTR_0853s0010 | 52.083 | 144 | 68 | 1 | 28 | 171 | 16 | 158 | 1.58e-43 | 153 |
| MS.gene62794.t1 | MTR_0734s0010 | 45.641 | 195 | 97 | 5 | 412 | 604 | 1 | 188 | 2.49e-43 | 154 |
| MS.gene62794.t1 | MTR_1g019850 | 55.634 | 142 | 55 | 1 | 32 | 173 | 65 | 198 | 1.00e-40 | 148 |
| MS.gene62794.t1 | MTR_3g020080 | 53.271 | 107 | 29 | 2 | 237 | 339 | 3 | 92 | 1.43e-25 | 102 |
| MS.gene62794.t1 | MTR_4g035820 | 23.981 | 417 | 253 | 15 | 30 | 405 | 68 | 461 | 1.13e-20 | 96.7 |
| MS.gene62794.t1 | MTR_8g466860 | 82.051 | 39 | 7 | 0 | 251 | 289 | 80 | 118 | 1.87e-14 | 70.5 |
| MS.gene62794.t1 | MTR_6g022070 | 31.298 | 131 | 89 | 1 | 222 | 351 | 37 | 167 | 3.84e-13 | 71.2 |
| MS.gene62794.t1 | MTR_3g006370 | 35.897 | 117 | 59 | 5 | 36 | 144 | 49 | 157 | 1.60e-12 | 67.8 |
| MS.gene62794.t1 | MTR_2g024230 | 55.769 | 52 | 23 | 0 | 37 | 88 | 90 | 141 | 4.59e-12 | 65.1 |
| MS.gene62794.t1 | MTR_8g465780 | 26.667 | 150 | 98 | 3 | 258 | 404 | 1 | 141 | 2.51e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62794.t1 | AT4G38180 | 39.738 | 229 | 138 | 0 | 220 | 448 | 409 | 637 | 9.90e-58 | 207 |
| MS.gene62794.t1 | AT4G38180 | 33.173 | 208 | 116 | 7 | 27 | 218 | 59 | 259 | 3.59e-23 | 105 |
| MS.gene62794.t1 | AT2G27110 | 33.846 | 325 | 201 | 5 | 177 | 498 | 171 | 484 | 2.43e-52 | 191 |
| MS.gene62794.t1 | AT2G27110 | 33.846 | 325 | 201 | 5 | 177 | 498 | 316 | 629 | 7.00e-52 | 191 |
| MS.gene62794.t1 | AT2G27110 | 33.846 | 325 | 201 | 5 | 177 | 498 | 316 | 629 | 7.00e-52 | 191 |
| MS.gene62794.t1 | AT4G38170 | 34.335 | 233 | 153 | 0 | 212 | 444 | 166 | 398 | 2.80e-46 | 171 |
| MS.gene62794.t1 | AT4G15090 | 30.117 | 342 | 219 | 5 | 222 | 560 | 387 | 711 | 3.40e-42 | 163 |
| MS.gene62794.t1 | AT4G15090 | 30.117 | 342 | 219 | 5 | 222 | 560 | 387 | 711 | 3.40e-42 | 163 |
| MS.gene62794.t1 | AT4G15090 | 30.117 | 342 | 219 | 5 | 222 | 560 | 387 | 711 | 3.40e-42 | 163 |
| MS.gene62794.t1 | AT4G15090 | 30.117 | 342 | 219 | 5 | 222 | 560 | 387 | 711 | 3.40e-42 | 163 |
| MS.gene62794.t1 | AT4G15090 | 30.117 | 342 | 219 | 5 | 222 | 560 | 387 | 711 | 3.40e-42 | 163 |
| MS.gene62794.t1 | AT3G22170 | 34.529 | 223 | 145 | 1 | 222 | 444 | 396 | 617 | 4.99e-40 | 157 |
| MS.gene62794.t1 | AT3G22170 | 34.529 | 223 | 145 | 1 | 222 | 444 | 396 | 617 | 4.99e-40 | 157 |
| MS.gene62794.t1 | AT3G06250 | 30.650 | 323 | 206 | 6 | 176 | 498 | 450 | 754 | 3.94e-38 | 150 |
| MS.gene62794.t1 | AT3G06250 | 30.650 | 323 | 206 | 6 | 176 | 498 | 450 | 754 | 3.94e-38 | 150 |
| MS.gene62794.t1 | AT3G06250 | 30.650 | 323 | 206 | 6 | 176 | 498 | 450 | 754 | 3.94e-38 | 150 |
| MS.gene62794.t1 | AT5G18960 | 32.491 | 277 | 181 | 3 | 222 | 498 | 508 | 778 | 2.22e-37 | 149 |
| MS.gene62794.t1 | AT5G18960 | 32.491 | 277 | 181 | 3 | 222 | 498 | 508 | 778 | 2.22e-37 | 149 |
| MS.gene62794.t1 | AT1G76320 | 27.632 | 380 | 251 | 8 | 192 | 562 | 299 | 663 | 3.91e-37 | 147 |
| MS.gene62794.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.39e-11 | 66.2 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 335 | 566 | 3.99e-37 | 147 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 335 | 566 | 3.99e-37 | 147 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 278 | 509 | 4.78e-37 | 147 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 335 | 566 | 5.05e-37 | 147 |
| MS.gene62794.t1 | AT1G76320 | 27.632 | 380 | 251 | 8 | 192 | 562 | 299 | 663 | 5.16e-37 | 147 |
| MS.gene62794.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 4.81e-11 | 66.2 |
| MS.gene62794.t1 | AT1G76320 | 27.632 | 380 | 251 | 8 | 192 | 562 | 299 | 663 | 5.40e-37 | 147 |
| MS.gene62794.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.07e-11 | 66.2 |
| MS.gene62794.t1 | AT1G76320 | 27.632 | 380 | 251 | 8 | 192 | 562 | 299 | 663 | 5.40e-37 | 147 |
| MS.gene62794.t1 | AT1G76320 | 26.984 | 189 | 118 | 5 | 41 | 222 | 1 | 176 | 5.07e-11 | 66.2 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 349 | 580 | 5.81e-37 | 147 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 335 | 566 | 5.99e-37 | 147 |
| MS.gene62794.t1 | AT4G19990 | 35.193 | 233 | 149 | 2 | 222 | 453 | 335 | 566 | 5.99e-37 | 147 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 2.68e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 2.76e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 2.76e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 294 | 512 | 3.10e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 3.10e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 3.10e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 335 | 553 | 3.10e-36 | 145 |
| MS.gene62794.t1 | AT2G32250 | 30.909 | 220 | 151 | 1 | 226 | 445 | 294 | 512 | 3.18e-36 | 145 |
| MS.gene62794.t1 | AT1G52520 | 31.780 | 236 | 151 | 4 | 220 | 446 | 405 | 639 | 2.07e-33 | 136 |
| MS.gene62794.t1 | AT1G10240 | 27.152 | 302 | 184 | 6 | 222 | 508 | 390 | 670 | 3.13e-27 | 117 |
| MS.gene62794.t1 | AT1G10240 | 27.801 | 241 | 133 | 8 | 34 | 258 | 45 | 260 | 3.95e-15 | 79.3 |
| MS.gene62794.t1 | AT1G10240 | 27.152 | 302 | 184 | 6 | 222 | 508 | 390 | 670 | 3.13e-27 | 117 |
| MS.gene62794.t1 | AT1G10240 | 27.801 | 241 | 133 | 8 | 34 | 258 | 45 | 260 | 3.95e-15 | 79.3 |
| MS.gene62794.t1 | AT1G80010 | 29.185 | 233 | 153 | 5 | 223 | 446 | 433 | 662 | 4.96e-26 | 114 |
| MS.gene62794.t1 | AT5G28530 | 27.170 | 265 | 165 | 6 | 233 | 481 | 352 | 604 | 3.79e-19 | 92.0 |
| MS.gene62794.t1 | AT5G28530 | 27.170 | 265 | 165 | 6 | 233 | 481 | 415 | 667 | 9.34e-19 | 90.9 |
| MS.gene62794.t1 | AT5G28530 | 27.170 | 265 | 165 | 6 | 233 | 481 | 415 | 667 | 9.34e-19 | 90.9 |
| MS.gene62794.t1 | AT5G28530 | 27.509 | 269 | 163 | 7 | 233 | 481 | 352 | 608 | 1.23e-18 | 90.1 |
| MS.gene62794.t1 | AT5G28530 | 27.509 | 269 | 163 | 7 | 233 | 481 | 415 | 671 | 3.37e-18 | 89.0 |
| MS.gene62794.t1 | AT2G43280 | 31.159 | 138 | 79 | 5 | 19 | 148 | 4 | 133 | 9.02e-12 | 65.1 |
| MS.gene62794.t1 | AT3G07500 | 31.544 | 149 | 80 | 7 | 1 | 141 | 1 | 135 | 2.49e-11 | 64.3 |
Find 76 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTCGTTGATGTAAATT+TGG | 0.172325 | 8.1:+20902314 | MS.gene62794:CDS |
| CTTCCTCCGACAAGCAATTT+TGG | 0.188112 | 8.1:-20902728 | None:intergenic |
| TTTACAATTCATTTGCAAAA+AGG | 0.228560 | 8.1:+20900856 | MS.gene62794:CDS |
| TGCATCCTTCTTAATATCTT+TGG | 0.239826 | 8.1:-20902534 | None:intergenic |
| GGGACTTGGCTTTCTCTAAT+AGG | 0.243998 | 8.1:+20901249 | MS.gene62794:CDS |
| AGCAAAGGTATTAGTTGATT+TGG | 0.254141 | 8.1:+20902569 | MS.gene62794:CDS |
| GAGGTACATTAGAAGGAAAT+TGG | 0.278387 | 8.1:+20901060 | MS.gene62794:CDS |
| GGAGTTTCTCCTTTGGAATC+TGG | 0.287253 | 8.1:+20902693 | MS.gene62794:CDS |
| GGATTTCTAATAGTCAATTC+TGG | 0.312090 | 8.1:-20902759 | None:intergenic |
| ATCTTGAGCATTGTAGTTGC+TGG | 0.330448 | 8.1:-20902289 | None:intergenic |
| GGTAAATTTCAAGATGAGAT+TGG | 0.337382 | 8.1:+20902201 | MS.gene62794:CDS |
| CATACAAAGACAGCTCTCTT+TGG | 0.340587 | 8.1:-20900912 | None:intergenic |
| GGACTTGGCTTTCTCTAATA+GGG | 0.341505 | 8.1:+20901250 | MS.gene62794:CDS |
| TATATAAAATTAGAGAATCT+TGG | 0.344745 | 8.1:+20901917 | MS.gene62794:CDS |
| TTTAATTCCTCACCAACATT+AGG | 0.347135 | 8.1:-20900780 | None:intergenic |
| ATTAAATAGTGAACCTTGTA+AGG | 0.348615 | 8.1:+20900797 | MS.gene62794:CDS |
| CAGTGATGGAGTTTCTCCTT+TGG | 0.356600 | 8.1:+20902686 | MS.gene62794:CDS |
| TCCAACGCTGCAAAATAAAA+TGG | 0.360936 | 8.1:-20902443 | None:intergenic |
| GTTAAAAGAGGTACATTAGA+AGG | 0.366674 | 8.1:+20901053 | MS.gene62794:CDS |
| TCTTCAAAACTTTCTATACT+TGG | 0.373106 | 8.1:-20901835 | None:intergenic |
| TAGTTTGATTTGTGTCATCT+TGG | 0.378031 | 8.1:-20900983 | None:intergenic |
| CTTTCTCTAATAGGGATTGT+TGG | 0.385066 | 8.1:+20901258 | MS.gene62794:CDS |
| AAACAGCTTCTATTATAAAC+TGG | 0.392497 | 8.1:-20901943 | None:intergenic |
| CAATTATTGCAAACAGAAAC+AGG | 0.397066 | 8.1:+20901340 | MS.gene62794:CDS |
| GAAACTTGATAGACATAGTT+AGG | 0.397106 | 8.1:-20902267 | None:intergenic |
| AATGTTCAGTGAAGGGGACT+TGG | 0.418030 | 8.1:+20901235 | MS.gene62794:CDS |
| GTAAATTTCAAGATGAGATT+GGG | 0.418089 | 8.1:+20902202 | MS.gene62794:CDS |
| GTCCGTACTCAATCATTAAT+CGG | 0.426232 | 8.1:-20901867 | None:intergenic |
| AAGTGTTCTACTTCTCGAAC+TGG | 0.426697 | 8.1:+20901011 | MS.gene62794:CDS |
| CCACGCAATGCACAAACAAA+AGG | 0.435072 | 8.1:+20902780 | MS.gene62794:CDS |
| GCCACACTTGTTGTTAAAAG+AGG | 0.437725 | 8.1:+20901041 | MS.gene62794:CDS |
| GACAACAATGAATGGCTTCA+AGG | 0.439948 | 8.1:+20901892 | MS.gene62794:CDS |
| AATTCATTATATCTGATTTG+AGG | 0.445916 | 8.1:+20902616 | MS.gene62794:CDS |
| CGCTGCAAAATAAAATGGTC+AGG | 0.446582 | 8.1:-20902438 | None:intergenic |
| GGAATTCAAATCTGTGGAAA+AGG | 0.451124 | 8.1:+20900824 | MS.gene62794:CDS |
| ATTTGTGTTGAAATTTGAAA+AGG | 0.454017 | 8.1:+20902053 | MS.gene62794:CDS |
| TTGAATTCCATCCCCTTACA+AGG | 0.484462 | 8.1:-20900810 | None:intergenic |
| TTAGCTGCTGCTCCTAATGT+TGG | 0.490364 | 8.1:+20900768 | MS.gene62794:CDS |
| AAAGAGAGGATTATGAAAGT+AGG | 0.500092 | 8.1:+20902103 | MS.gene62794:CDS |
| ATTTGATTTCTTCATTGCAA+TGG | 0.501662 | 8.1:-20902655 | None:intergenic |
| CAAAATTGTAGATTCAAAAG+TGG | 0.511466 | 8.1:+20902831 | MS.gene62794:CDS |
| GTCTTTGTATGTTGTAATGA+AGG | 0.517879 | 8.1:+20900924 | MS.gene62794:CDS |
| TGATTTGAGGCGCACTCGTA+TGG | 0.520232 | 8.1:+20902629 | MS.gene62794:CDS |
| TAGTGAACCTTGTAAGGGGA+TGG | 0.531310 | 8.1:+20900803 | MS.gene62794:CDS |
| CACGCAATGCACAAACAAAA+GGG | 0.538817 | 8.1:+20902781 | MS.gene62794:CDS |
| AAGGAAGAAGGTATACCGAC+AGG | 0.538923 | 8.1:+20901200 | MS.gene62794:CDS |
| TGTCAACCAAAATTGCTTGT+CGG | 0.544243 | 8.1:+20902722 | MS.gene62794:CDS |
| CGGTGTCATAAAAGCATGAA+TGG | 0.550442 | 8.1:+20901149 | MS.gene62794:CDS |
| ACAAAAGGGAGAAAGAAGAA+TGG | 0.552574 | 8.1:+20902795 | MS.gene62794:CDS |
| TCAAATTTAGCTATCAGTGA+TGG | 0.553213 | 8.1:+20902672 | MS.gene62794:CDS |
| CGAAGAAAGAATTTAGACGT+TGG | 0.559738 | 8.1:+20901299 | MS.gene62794:CDS |
| TTAAATAGTGAACCTTGTAA+GGG | 0.571595 | 8.1:+20900798 | MS.gene62794:CDS |
| GCACGCCAAAGATATTAAGA+AGG | 0.572798 | 8.1:+20902529 | MS.gene62794:CDS |
| ACAACAATGAATGGCTTCAA+GGG | 0.573168 | 8.1:+20901893 | MS.gene62794:CDS |
| ACGGACTGGACAACAATGAA+TGG | 0.575271 | 8.1:+20901884 | MS.gene62794:CDS |
| TGCTACAATGTTCAGTGAAG+GGG | 0.575975 | 8.1:+20901229 | MS.gene62794:CDS |
| TTGCTACAATGTTCAGTGAA+GGG | 0.579493 | 8.1:+20901228 | MS.gene62794:CDS |
| GTCTACAGGGTCAAAACTTG+AGG | 0.581238 | 8.1:+20902143 | MS.gene62794:CDS |
| GGGGATGGAATTCAAATCTG+TGG | 0.582477 | 8.1:+20900818 | MS.gene62794:CDS |
| TGTGTTGAAATTTGAAAAGG+CGG | 0.586171 | 8.1:+20902056 | MS.gene62794:CDS |
| AGCCGATTAATGATTGAGTA+CGG | 0.595364 | 8.1:+20901865 | MS.gene62794:CDS |
| GAAACACAGATTGCAAAATG+TGG | 0.599828 | 8.1:+20902336 | MS.gene62794:CDS |
| ATTGTAGCAACCTTTCCTGT+CGG | 0.600908 | 8.1:-20901215 | None:intergenic |
| TGCTGCTCCTAATGTTGGTG+AGG | 0.601546 | 8.1:+20900773 | MS.gene62794:CDS |
| GTTGCTACAATGTTCAGTGA+AGG | 0.603702 | 8.1:+20901227 | MS.gene62794:CDS |
| GCATGCTCAACAAGAAGCAA+AGG | 0.605686 | 8.1:+20902554 | MS.gene62794:CDS |
| TTCCACATTTGTTGACTGTG+TGG | 0.606600 | 8.1:-20900727 | None:intergenic |
| ATTAATGATTGAGTACGGAC+TGG | 0.607432 | 8.1:+20901870 | MS.gene62794:CDS |
| GTGCATTGGTCAATTATGGA+TGG | 0.620199 | 8.1:+20900687 | None:intergenic |
| AGAAGGTATACCGACAGGAA+AGG | 0.621900 | 8.1:+20901205 | MS.gene62794:CDS |
| AGCCACACAGTCAACAAATG+TGG | 0.622019 | 8.1:+20900725 | MS.gene62794:CDS |
| TAAATAGTGAACCTTGTAAG+GGG | 0.625905 | 8.1:+20900799 | MS.gene62794:CDS |
| CAACCAAAATTGCTTGTCGG+AGG | 0.633822 | 8.1:+20902725 | MS.gene62794:CDS |
| GAATGATCATAACCATCCCA+TGG | 0.640152 | 8.1:+20901100 | MS.gene62794:CDS |
| CTAAAAGTGTGTCTTATATG+CGG | 0.670716 | 8.1:+20901129 | MS.gene62794:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.709074 | 8.1:+20902891 | MS.gene62794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAATTAGAGAATCT+TGG | + | chr8.1:20901917-20901936 | MS.gene62794:CDS | 15.0% |
| !!! | CATTATCAATCAATTTTATT+TGG | + | chr8.1:20901547-20901566 | MS.gene62794:intron | 15.0% |
| !! | ATTTGTGTTGAAATTTGAAA+AGG | + | chr8.1:20902053-20902072 | MS.gene62794:CDS | 20.0% |
| !! | TTTACAATTCATTTGCAAAA+AGG | + | chr8.1:20900856-20900875 | MS.gene62794:CDS | 20.0% |
| !!! | AATTCATTATATCTGATTTG+AGG | + | chr8.1:20902616-20902635 | MS.gene62794:CDS | 20.0% |
| !!! | ATGTCAATTATATGAGTTTT+TGG | + | chr8.1:20902359-20902378 | MS.gene62794:CDS | 20.0% |
| !!! | ATTTATTCGAGAAACATTTT+TGG | + | chr8.1:20902180-20902199 | MS.gene62794:CDS | 20.0% |
| !!! | TGTCAATTATATGAGTTTTT+GGG | + | chr8.1:20902360-20902379 | MS.gene62794:CDS | 20.0% |
| ! | AAAAAGAAGATTAGCAAAGA+TGG | + | chr8.1:20902243-20902262 | MS.gene62794:CDS | 25.0% |
| ! | AAACAGCTTCTATTATAAAC+TGG | - | chr8.1:20901946-20901965 | None:intergenic | 25.0% |
| ! | AATTCATTTGCAAAAAGGAT+GGG | + | chr8.1:20900861-20900880 | MS.gene62794:CDS | 25.0% |
| ! | ATATTACATCTCCAAATTGT+TGG | - | chr8.1:20901460-20901479 | None:intergenic | 25.0% |
| ! | ATTAAATAGTGAACCTTGTA+AGG | + | chr8.1:20900797-20900816 | MS.gene62794:CDS | 25.0% |
| ! | CAAAATTGTAGATTCAAAAG+TGG | + | chr8.1:20902831-20902850 | MS.gene62794:CDS | 25.0% |
| ! | GTAAATTTCAAGATGAGATT+GGG | + | chr8.1:20902202-20902221 | MS.gene62794:CDS | 25.0% |
| ! | TCTTCAAAACTTTCTATACT+TGG | - | chr8.1:20901838-20901857 | None:intergenic | 25.0% |
| ! | TGATTATTCAATCCAACAAA+CGG | - | chr8.1:20901529-20901548 | None:intergenic | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+GGG | + | chr8.1:20900798-20900817 | MS.gene62794:CDS | 25.0% |
| !! | ATTTGATTTCTTCATTGCAA+TGG | - | chr8.1:20902658-20902677 | None:intergenic | 25.0% |
| !! | GTCAATTATATGAGTTTTTG+GGG | + | chr8.1:20902361-20902380 | MS.gene62794:CDS | 25.0% |
| !!! | AAGTCTTGTTGAACATTTTA+AGG | + | chr8.1:20901181-20901200 | MS.gene62794:CDS | 25.0% |
| !!! | ATACTTGTTAGTCTTATATG+TGG | - | chr8.1:20901492-20901511 | None:intergenic | 25.0% |
| !!! | GTTGTTTGAAACTTTTCTTA+AGG | + | chr8.1:20901612-20901631 | MS.gene62794:intron | 25.0% |
| !!! | TCGGATGATAAACTTTTTTT+GGG | + | chr8.1:20901409-20901428 | MS.gene62794:intron | 25.0% |
| AAAAAACGCATATTGTCTAC+AGG | + | chr8.1:20902129-20902148 | MS.gene62794:CDS | 30.0% | |
| AAAAACGCATATTGTCTACA+GGG | + | chr8.1:20902130-20902149 | MS.gene62794:CDS | 30.0% | |
| AAAGAGAGGATTATGAAAGT+AGG | + | chr8.1:20902103-20902122 | MS.gene62794:CDS | 30.0% | |
| ATTATTCAATCCAACAAACG+GGG | - | chr8.1:20901527-20901546 | None:intergenic | 30.0% | |
| CAATTATTGCAAACAGAAAC+AGG | + | chr8.1:20901340-20901359 | MS.gene62794:CDS | 30.0% | |
| CAATTCATTTGCAAAAAGGA+TGG | + | chr8.1:20900860-20900879 | MS.gene62794:CDS | 30.0% | |
| CTTAGAAGTAGAAAAAAGAG+AGG | + | chr8.1:20902089-20902108 | MS.gene62794:CDS | 30.0% | |
| GAAACTTGATAGACATAGTT+AGG | - | chr8.1:20902270-20902289 | None:intergenic | 30.0% | |
| GATTATTCAATCCAACAAAC+GGG | - | chr8.1:20901528-20901547 | None:intergenic | 30.0% | |
| GGATTTCTAATAGTCAATTC+TGG | - | chr8.1:20902762-20902781 | None:intergenic | 30.0% | |
| GGTAAATTTCAAGATGAGAT+TGG | + | chr8.1:20902201-20902220 | MS.gene62794:CDS | 30.0% | |
| GTCTTTGTATGTTGTAATGA+AGG | + | chr8.1:20900924-20900943 | MS.gene62794:CDS | 30.0% | |
| GTTTCTCGTTGATGTAAATT+TGG | + | chr8.1:20902314-20902333 | MS.gene62794:CDS | 30.0% | |
| TAAATAGTGAACCTTGTAAG+GGG | + | chr8.1:20900799-20900818 | MS.gene62794:CDS | 30.0% | |
| TCAAATTTAGCTATCAGTGA+TGG | + | chr8.1:20902672-20902691 | MS.gene62794:CDS | 30.0% | |
| TGCATCCTTCTTAATATCTT+TGG | - | chr8.1:20902537-20902556 | None:intergenic | 30.0% | |
| TGTGTTGAAATTTGAAAAGG+CGG | + | chr8.1:20902056-20902075 | MS.gene62794:CDS | 30.0% | |
| TTTAATTCCTCACCAACATT+AGG | - | chr8.1:20900783-20900802 | None:intergenic | 30.0% | |
| ! | CTAAAAGTGTGTCTTATATG+CGG | + | chr8.1:20901129-20901148 | MS.gene62794:CDS | 30.0% |
| ! | GCATATAAGACACACTTTTA+GGG | - | chr8.1:20901130-20901149 | None:intergenic | 30.0% |
| ! | GTTAAAAGAGGTACATTAGA+AGG | + | chr8.1:20901053-20901072 | MS.gene62794:CDS | 30.0% |
| ! | TGAAACTTTTCTTAAGGCAA+TGG | + | chr8.1:20901618-20901637 | MS.gene62794:intron | 30.0% |
| !! | AGATTAGCTTACCAACAATT+TGG | + | chr8.1:20901446-20901465 | MS.gene62794:intron | 30.0% |
| !! | AGCAAAGGTATTAGTTGATT+TGG | + | chr8.1:20902569-20902588 | MS.gene62794:CDS | 30.0% |
| !! | GTTGAACATTTTAAGGAAGA+AGG | + | chr8.1:20901188-20901207 | MS.gene62794:CDS | 30.0% |
| !! | TAGTTTGATTTGTGTCATCT+TGG | - | chr8.1:20900986-20901005 | None:intergenic | 30.0% |
| !!! | AATAGAAGCTGTTTTTTTGC+TGG | + | chr8.1:20901952-20901971 | MS.gene62794:CDS | 30.0% |
| !!! | AGCAATTTTGGTTGACATTT+TGG | - | chr8.1:20902719-20902738 | None:intergenic | 30.0% |
| !!! | ATAGAAGCTGTTTTTTTGCT+GGG | + | chr8.1:20901953-20901972 | MS.gene62794:CDS | 30.0% |
| !!! | CTCGGATGATAAACTTTTTT+TGG | + | chr8.1:20901408-20901427 | MS.gene62794:intron | 30.0% |
| !!! | CTCGTAATTTTTCAAGCAAA+AGG | + | chr8.1:20902402-20902421 | MS.gene62794:CDS | 30.0% |
| !!! | CTCTTTTTTCTACTTCTAAG+CGG | - | chr8.1:20902089-20902108 | None:intergenic | 30.0% |
| !!! | TAGAAAGTTTTGAAGAAGAC+TGG | + | chr8.1:20901842-20901861 | MS.gene62794:CDS | 30.0% |
| ACAAAAGGGAGAAAGAAGAA+TGG | + | chr8.1:20902795-20902814 | MS.gene62794:CDS | 35.0% | |
| ACAACAATGAATGGCTTCAA+GGG | + | chr8.1:20901893-20901912 | MS.gene62794:CDS | 35.0% | |
| AGCCGATTAATGATTGAGTA+CGG | + | chr8.1:20901865-20901884 | MS.gene62794:CDS | 35.0% | |
| AGTCAGAACGCTCATTTATA+TGG | + | chr8.1:20901590-20901609 | MS.gene62794:intron | 35.0% | |
| ATTAATGATTGAGTACGGAC+TGG | + | chr8.1:20901870-20901889 | MS.gene62794:CDS | 35.0% | |
| CGAAGAAAGAATTTAGACGT+TGG | + | chr8.1:20901299-20901318 | MS.gene62794:CDS | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | + | chr8.1:20901258-20901277 | MS.gene62794:CDS | 35.0% | |
| GAAACACAGATTGCAAAATG+TGG | + | chr8.1:20902336-20902355 | MS.gene62794:CDS | 35.0% | |
| GAGGTACATTAGAAGGAAAT+TGG | + | chr8.1:20901060-20901079 | MS.gene62794:CDS | 35.0% | |
| GGAATTCAAATCTGTGGAAA+AGG | + | chr8.1:20900824-20900843 | MS.gene62794:CDS | 35.0% | |
| GTCCGTACTCAATCATTAAT+CGG | - | chr8.1:20901870-20901889 | None:intergenic | 35.0% | |
| TCCAACGCTGCAAAATAAAA+TGG | - | chr8.1:20902446-20902465 | None:intergenic | 35.0% | |
| TCCAATGTGATGAAGATTCT+CGG | + | chr8.1:20901390-20901409 | MS.gene62794:intron | 35.0% | |
| TGGTCAGTTATGACAGATTT+GGG | - | chr8.1:20901655-20901674 | None:intergenic | 35.0% | |
| TGTCAACCAAAATTGCTTGT+CGG | + | chr8.1:20902722-20902741 | MS.gene62794:CDS | 35.0% | |
| TTGCTACAATGTTCAGTGAA+GGG | + | chr8.1:20901228-20901247 | MS.gene62794:CDS | 35.0% | |
| TTTCAATTCTCGCTTGAAAG+TGG | - | chr8.1:20901797-20901816 | None:intergenic | 35.0% | |
| ! | ACCTCTTTTAACAACAAGTG+TGG | - | chr8.1:20901045-20901064 | None:intergenic | 35.0% |
| ! | ACTTTTCTTAAGGCAATGGA+TGG | + | chr8.1:20901622-20901641 | MS.gene62794:intron | 35.0% |
| ! | CGCATATAAGACACACTTTT+AGG | - | chr8.1:20901131-20901150 | None:intergenic | 35.0% |
| ! | GATACGACGAGTAATTTTGA+AGG | + | chr8.1:20902498-20902517 | MS.gene62794:CDS | 35.0% |
| !! | TTTGCAAAAAGGATGGGTTT+TGG | + | chr8.1:20900867-20900886 | MS.gene62794:CDS | 35.0% |
| !!! | ACCATTTTATTTTGCAGCGT+TGG | + | chr8.1:20902442-20902461 | MS.gene62794:CDS | 35.0% |
| AAGTGTTCTACTTCTCGAAC+TGG | + | chr8.1:20901011-20901030 | MS.gene62794:CDS | 40.0% | |
| ATTGTAGCAACCTTTCCTGT+CGG | - | chr8.1:20901218-20901237 | None:intergenic | 40.0% | |
| CAAATCTGTCATAACTGACC+AGG | + | chr8.1:20901654-20901673 | MS.gene62794:intron | 40.0% | |
| CACGCAATGCACAAACAAAA+GGG | + | chr8.1:20902781-20902800 | MS.gene62794:CDS | 40.0% | |
| CATACAAAGACAGCTCTCTT+TGG | - | chr8.1:20900915-20900934 | None:intergenic | 40.0% | |
| CGCTGCAAAATAAAATGGTC+AGG | - | chr8.1:20902441-20902460 | None:intergenic | 40.0% | |
| CTGGTCAGTTATGACAGATT+TGG | - | chr8.1:20901656-20901675 | None:intergenic | 40.0% | |
| GAATGATCATAACCATCCCA+TGG | + | chr8.1:20901100-20901119 | MS.gene62794:CDS | 40.0% | |
| GACAACAATGAATGGCTTCA+AGG | + | chr8.1:20901892-20901911 | MS.gene62794:CDS | 40.0% | |
| GCACGCCAAAGATATTAAGA+AGG | + | chr8.1:20902529-20902548 | MS.gene62794:CDS | 40.0% | |
| GTTGCTACAATGTTCAGTGA+AGG | + | chr8.1:20901227-20901246 | MS.gene62794:CDS | 40.0% | |
| TCCGAGAATCTTCATCACAT+TGG | - | chr8.1:20901394-20901413 | None:intergenic | 40.0% | |
| TCCTAATATGCCATAAGCAG+AGG | - | chr8.1:20901732-20901751 | None:intergenic | 40.0% | |
| TGCTACAATGTTCAGTGAAG+GGG | + | chr8.1:20901229-20901248 | MS.gene62794:CDS | 40.0% | |
| TGTCATAACTGACCAGGATT+TGG | + | chr8.1:20901660-20901679 | MS.gene62794:intron | 40.0% | |
| TTGAATTCCATCCCCTTACA+AGG | - | chr8.1:20900813-20900832 | None:intergenic | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | + | chr8.1:20902891-20902910 | MS.gene62794:CDS | 40.0% |
| ! | ATCTTGAGCATTGTAGTTGC+TGG | - | chr8.1:20902292-20902311 | None:intergenic | 40.0% |
| ! | GGACTTGGCTTTCTCTAATA+GGG | + | chr8.1:20901250-20901269 | MS.gene62794:CDS | 40.0% |
| ! | TTCCACATTTGTTGACTGTG+TGG | - | chr8.1:20900730-20900749 | None:intergenic | 40.0% |
| ! | TTGGCTATGAAAGCTGCTTT+AGG | + | chr8.1:20901679-20901698 | MS.gene62794:intron | 40.0% |
| !! | ACATTTTGGCCAGATTCCAA+AGG | - | chr8.1:20902705-20902724 | None:intergenic | 40.0% |
| !! | AGTTTTTGGGGATATTGTGC+AGG | + | chr8.1:20902373-20902392 | MS.gene62794:CDS | 40.0% |
| !! | CGGTGTCATAAAAGCATGAA+TGG | + | chr8.1:20901149-20901168 | MS.gene62794:CDS | 40.0% |
| !! | GCCACACTTGTTGTTAAAAG+AGG | + | chr8.1:20901041-20901060 | MS.gene62794:CDS | 40.0% |
| !!! | ACACTTTTAGGGCTAACCAT+GGG | - | chr8.1:20901119-20901138 | None:intergenic | 40.0% |
| AATCCAACAAACGGGGCAAA+TGG | - | chr8.1:20901520-20901539 | None:intergenic | 45.0% | |
| AATGTTCAGTGAAGGGGACT+TGG | + | chr8.1:20901235-20901254 | MS.gene62794:CDS | 45.0% | |
| AGCCACACAGTCAACAAATG+TGG | + | chr8.1:20900725-20900744 | MS.gene62794:CDS | 45.0% | |
| CAACCAAAATTGCTTGTCGG+AGG | + | chr8.1:20902725-20902744 | MS.gene62794:CDS | 45.0% | |
| CAGCTTTCATAGCCAAATCC+TGG | - | chr8.1:20901675-20901694 | None:intergenic | 45.0% | |
| CCACGCAATGCACAAACAAA+AGG | + | chr8.1:20902780-20902799 | MS.gene62794:CDS | 45.0% | |
| GCATGCTCAACAAGAAGCAA+AGG | + | chr8.1:20902554-20902573 | MS.gene62794:CDS | 45.0% | |
| GCCTCTGCTTATGGCATATT+AGG | + | chr8.1:20901728-20901747 | MS.gene62794:intron | 45.0% | |
| GGGGATGGAATTCAAATCTG+TGG | + | chr8.1:20900818-20900837 | MS.gene62794:CDS | 45.0% | |
| GTCTACAGGGTCAAAACTTG+AGG | + | chr8.1:20902143-20902162 | MS.gene62794:CDS | 45.0% | |
| TAGTGAACCTTGTAAGGGGA+TGG | + | chr8.1:20900803-20900822 | MS.gene62794:CDS | 45.0% | |
| TTAGCTGCTGCTCCTAATGT+TGG | + | chr8.1:20900768-20900787 | MS.gene62794:CDS | 45.0% | |
| ! | AAGGAAGAAGGTATACCGAC+AGG | + | chr8.1:20901200-20901219 | MS.gene62794:CDS | 45.0% |
| ! | AGAAGGTATACCGACAGGAA+AGG | + | chr8.1:20901205-20901224 | MS.gene62794:CDS | 45.0% |
| ! | CAGTGATGGAGTTTCTCCTT+TGG | + | chr8.1:20902686-20902705 | MS.gene62794:CDS | 45.0% |
| ! | CTTCCTCCGACAAGCAATTT+TGG | - | chr8.1:20902731-20902750 | None:intergenic | 45.0% |
| ! | GGGACTTGGCTTTCTCTAAT+AGG | + | chr8.1:20901249-20901268 | MS.gene62794:CDS | 45.0% |
| !! | ACGGACTGGACAACAATGAA+TGG | + | chr8.1:20901884-20901903 | MS.gene62794:CDS | 45.0% |
| !! | CCTTTTGTTTGTGCATTGCG+TGG | - | chr8.1:20902783-20902802 | None:intergenic | 45.0% |
| !! | GGAGTTTCTCCTTTGGAATC+TGG | + | chr8.1:20902693-20902712 | MS.gene62794:CDS | 45.0% |
| !!! | CACACTTTTAGGGCTAACCA+TGG | - | chr8.1:20901120-20901139 | None:intergenic | 45.0% |
| !!! | TTTTAGGGCTAACCATGGGA+TGG | - | chr8.1:20901115-20901134 | None:intergenic | 45.0% |
| CTAGACATCGCCTCTGCTTA+TGG | + | chr8.1:20901719-20901738 | MS.gene62794:intron | 50.0% | |
| TGCTGCTCCTAATGTTGGTG+AGG | + | chr8.1:20900773-20900792 | MS.gene62794:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | + | chr8.1:20901514-20901533 | MS.gene62794:intron | 50.0% |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | - | chr8.1:20901715-20901734 | None:intergenic | 50.0% |
| ! | TGATTTGAGGCGCACTCGTA+TGG | + | chr8.1:20902629-20902648 | MS.gene62794:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20900702 | 20902965 | 20900702 | ID=MS.gene62794 |
| chr8.1 | mRNA | 20900702 | 20902965 | 20900702 | ID=MS.gene62794.t1;Parent=MS.gene62794 |
| chr8.1 | exon | 20900702 | 20901361 | 20900702 | ID=MS.gene62794.t1.exon1;Parent=MS.gene62794.t1 |
| chr8.1 | CDS | 20900702 | 20901361 | 20900702 | ID=cds.MS.gene62794.t1;Parent=MS.gene62794.t1 |
| chr8.1 | exon | 20901805 | 20902965 | 20901805 | ID=MS.gene62794.t1.exon2;Parent=MS.gene62794.t1 |
| chr8.1 | CDS | 20901805 | 20902965 | 20901805 | ID=cds.MS.gene62794.t1;Parent=MS.gene62794.t1 |
| Gene Sequence |
| Protein sequence |
