AlfalfaGEDB | MS.gene62794

M. sativa cultivar XinJiangDaYe / MS.gene62794

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62794.t1	XP_024634520.1	77.1	754	25	1	1	606	1	754	0.00E+00	1104.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62794.t1	Q9SZL8	27.6	586	253	9	27	448	59	637	2.0e-64	248.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62794.t1	A0A2Z6P1T9	59.7	735	146	3	20	605	2	735	2.2e-237	831.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62794.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62794.t1	MTR_6g048540	65.812	117	40	0	420	536	106	222	4.36e-47	166
MS.gene62794.t1	MTR_6g048540	59.055	127	49	2	14	137	5	131	1.86e-42	153
MS.gene62794.t1	MTR_0853s0010	52.083	144	68	1	28	171	16	158	1.58e-43	153
MS.gene62794.t1	MTR_0734s0010	45.641	195	97	5	412	604	1	188	2.49e-43	154
MS.gene62794.t1	MTR_1g019850	55.634	142	55	1	32	173	65	198	1.00e-40	148
MS.gene62794.t1	MTR_3g020080	53.271	107	29	2	237	339	3	92	1.43e-25	102
MS.gene62794.t1	MTR_4g035820	23.981	417	253	15	30	405	68	461	1.13e-20	96.7
MS.gene62794.t1	MTR_8g466860	82.051	39	7	0	251	289	80	118	1.87e-14	70.5
MS.gene62794.t1	MTR_6g022070	31.298	131	89	1	222	351	37	167	3.84e-13	71.2
MS.gene62794.t1	MTR_3g006370	35.897	117	59	5	36	144	49	157	1.60e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62794.t1	AT4G38180	39.738	229	138	0	220	448	409	637	9.90e-58	207
MS.gene62794.t1	AT4G38180	33.173	208	116	7	27	218	59	259	3.59e-23	105
MS.gene62794.t1	AT2G27110	33.846	325	201	5	177	498	171	484	2.43e-52	191
MS.gene62794.t1	AT2G27110	33.846	325	201	5	177	498	316	629	7.00e-52	191
MS.gene62794.t1	AT2G27110	33.846	325	201	5	177	498	316	629	7.00e-52	191
MS.gene62794.t1	AT4G38170	34.335	233	153	0	212	444	166	398	2.80e-46	171
MS.gene62794.t1	AT4G15090	30.117	342	219	5	222	560	387	711	3.40e-42	163
MS.gene62794.t1	AT4G15090	30.117	342	219	5	222	560	387	711	3.40e-42	163
MS.gene62794.t1	AT4G15090	30.117	342	219	5	222	560	387	711	3.40e-42	163
MS.gene62794.t1	AT4G15090	30.117	342	219	5	222	560	387	711	3.40e-42	163

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Find 76 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTTCTATTATAAAC+TGG	0.392497	8.1:-20901943	None:intergenic
AAAGAGAGGATTATGAAAGT+AGG	0.500092	8.1:+20902103	MS.gene62794:CDS
AAGGAAGAAGGTATACCGAC+AGG	0.538923	8.1:+20901200	MS.gene62794:CDS
AAGTGTTCTACTTCTCGAAC+TGG	0.426697	8.1:+20901011	MS.gene62794:CDS
AATGTTCAGTGAAGGGGACT+TGG	0.418030	8.1:+20901235	MS.gene62794:CDS
AATTCATTATATCTGATTTG+AGG	0.445916	8.1:+20902616	MS.gene62794:CDS
ACAAAAGGGAGAAAGAAGAA+TGG	0.552574	8.1:+20902795	MS.gene62794:CDS
ACAACAATGAATGGCTTCAA+GGG	0.573168	8.1:+20901893	MS.gene62794:CDS
ACGGACTGGACAACAATGAA+TGG	0.575271	8.1:+20901884	MS.gene62794:CDS
AGAAAAGCATGTCATGAGTG+TGG	0.709074	8.1:+20902891	MS.gene62794:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACGCATATTGTCTAC+AGG	+	chr8.1:20902129-20902148	MS.gene62794:CDS	30.0%
AAAAACGCATATTGTCTACA+GGG	+	chr8.1:20902130-20902149	MS.gene62794:CDS	30.0%
AAAGAGAGGATTATGAAAGT+AGG	+	chr8.1:20902103-20902122	MS.gene62794:CDS	30.0%
ATTATTCAATCCAACAAACG+GGG	-	chr8.1:20901527-20901546	None:intergenic	30.0%
CAATTATTGCAAACAGAAAC+AGG	+	chr8.1:20901340-20901359	MS.gene62794:CDS	30.0%
CAATTCATTTGCAAAAAGGA+TGG	+	chr8.1:20900860-20900879	MS.gene62794:CDS	30.0%
CTTAGAAGTAGAAAAAAGAG+AGG	+	chr8.1:20902089-20902108	MS.gene62794:CDS	30.0%
GAAACTTGATAGACATAGTT+AGG	-	chr8.1:20902270-20902289	None:intergenic	30.0%
GATTATTCAATCCAACAAAC+GGG	-	chr8.1:20901528-20901547	None:intergenic	30.0%
GGATTTCTAATAGTCAATTC+TGG	-	chr8.1:20902762-20902781	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	20900702	20902965	20900702	ID=MS.gene62794
chr8.1	mRNA	20900702	20902965	20900702	ID=MS.gene62794.t1;Parent=MS.gene62794
chr8.1	exon	20900702	20901361	20900702	ID=MS.gene62794.t1.exon1;Parent=MS.gene62794.t1
chr8.1	CDS	20900702	20901361	20900702	ID=cds.MS.gene62794.t1;Parent=MS.gene62794.t1
chr8.1	exon	20901805	20902965	20901805	ID=MS.gene62794.t1.exon2;Parent=MS.gene62794.t1
chr8.1	CDS	20901805	20902965	20901805	ID=cds.MS.gene62794.t1;Parent=MS.gene62794.t1

Gene Sequence

>MS.gene62794

ATGGATGGTAATGTTTTTGAAGAAGCCACACAGTCAACAAATGTGGAAATATCTGAAGAAGATATTTTAGCTGCTGCTCCTAATGTTGGTGAGGAATTAAATAGTGAACCTTGTAAGGGGATGGAATTCAAATCTGTGGAAAAGGTTAAAGAATTTTACAATTCATTTGCAAAAAGGATGGGTTTTGGAGTACGTGTTCGCTCAACTAAACCAAAGAGAGCTGTCTTTGTATGTTGTAATGAAGGTCATCATATAGTGAAAAGTTCAATAAACAAAGAAATCCAAGATGACACAAATCAAACTAAAAGAAAGTGTTCTACTTCTCGAACTGGTTGTCTAGCCACACTTGTTGTTAAAAGAGGTACATTAGAAGGAAATTGGATTATATGTTCATTTAAGAATGATCATAACCATCCCATGGTTAGCCCTAAAAGTGTGTCTTATATGCGGTGTCATAAAAGCATGAATGGTGCTGCAAAAAGTCTTGTTGAACATTTTAAGGAAGAAGGTATACCGACAGGAAAGGTTGCTACAATGTTCAGTGAAGGGGACTTGGCTTTCTCTAATAGGGATTGTTGGAATCATGTCAGAAGTCTTCGAAGAAAGAATTTAGACGTTGGAGATGCTCAAGCTGTTTTCAATTATTGCAAACAGAAACAGGTAGAAAACTCAAACTTTTTCTATGAAATCCAATGTGATGAAGATTCTCGGATGATAAACTTTTTTTGGGTTGATGCTAGATCAAGATTAGCTTACCAACAATTTGGAGATGTAATATCTTTTGACACCACATATAAGACTAACAAGTATGTATGCCATTTGCCCCGTTTGTTGGATTGAATAATCATTATCAATCAATTTTATTTGGTTGTGCTTTACTACAAGACGAGTCAGAACGCTCATTTATATGGTTGTTTGAAACTTTTCTTAAGGCAATGGATGGTAAAAAGCCCAAATCTGTCATAACTGACCAGGATTTGGCTATGAAAGCTGCTTTAGGCAAAGTATTTCCAGAAACTAGACATCGCCTCTGCTTATGGCATATTAGGAAAAAATTTGCTGAAAAGTTAGCTCATGTTTATCATAAAAATTCCACTTTCAAGCGAGAATTGAAAAAATGCATTCATGTTTCACCAAGTATAGAAAGTTTTGAAGAAGACTGGAGCCGATTAATGATTGAGTACGGACTGGACAACAATGAATGGCTTCAAGGGTTATATAAAATTAGAGAATCTTGGATACCAGTTTATAATAGAAGCTGTTTTTTTGCTGGGATGAATACAAGTCAAAGAAGTGAGAGTATCAATGCGTTTTTTGATTCTTTTGTGAATGCAACTACAACATTGCAAGAATTTGTGTTGAAATTTGAAAAGGCGGTTGATAGCCGCTTAGAAGTAGAAAAAAGAGAGGATTATGAAAGTAGGCATAAAAAACGCATATTGTCTACAGGGTCAAAACTTGAGGAGCACGCTGCGTCTATTTATTCGAGAAACATTTTTGGTAAATTTCAAGATGAGATTGGGAAGATCTACAAATTTGCAAAAAAGAAGATTAGCAAAGATGGACCTAACTATGTCTATCAAGTTTCCAGCAACTACAATGCTCAAGATATGTTTCTCGTTGATGTAAATTTGGAAACACAGATTGCAAAATGTGGATGTCAATTATATGAGTTTTTGGGGATATTGTGCAGGCATATACTCGTAATTTTTCAAGCAAAAGGTATCACTCAAATTCCTGACCATTTTATTTTGCAGCGTTGGACTAAAAATGCTAACAAAAGCATTGAAGTTTGTGATACGACGAGTAATTTTGAAGGTCAAAATAGCACGCCAAAGATATTAAGAAGGATGCATGCTCAACAAGAAGCAAAGGTATTAGTTGATTTGGCTGAAGAGTCTGATGAGATATACAAATTCATTATATCTGATTTGAGGCGCACTCGTATGGCAGCCATTGCAATGAAGAAATCAAATTTAGCTATCAGTGATGGAGTTTCTCCTTTGGAATCTGGCCAAAATGTCAACCAAAATTGCTTGTCGGAGGAAGAAAGTGAACCAGAATTGACTATTAGAAATCCACGCAATGCACAAACAAAAGGGAGAAAGAAGAATGGACAGAAAAACACTCAAAATTGTAGATTCAAAAGTGGAATTGAACTGTCACATGCTCAACAAGTAGCAGTCAAAAGAAAAGCATGTCATGAGTGTGGTGAATCTGATCACAACAGCAGAACTTGCAAGAAAAGAAATCAAAATGATTAA

Protein sequence

>MS.gene62794.t1

MDGNVFEEATQSTNVEISEEDILAAAPNVGEELNSEPCKGMEFKSVEKVKEFYNSFAKRMGFGVRVRSTKPKRAVFVCCNEGHHIVKSSINKEIQDDTNQTKRKCSTSRTGCLATLVVKRGTLEGNWIICSFKNDHNHPMVSPKSVSYMRCHKSMNGAAKSLVEHFKEEGIPTGKVATMFSEGDLAFSNRDCWNHVRSLRRKNLDVGDAQAVFNYCKQKQRELKKCIHVSPSIESFEEDWSRLMIEYGLDNNEWLQGLYKIRESWIPVYNRSCFFAGMNTSQRSESINAFFDSFVNATTTLQEFVLKFEKAVDSRLEVEKREDYESRHKKRILSTGSKLEEHAASIYSRNIFGKFQDEIGKIYKFAKKKISKDGPNYVYQVSSNYNAQDMFLVDVNLETQIAKCGCQLYEFLGILCRHILVIFQAKGITQIPDHFILQRWTKNANKSIEVCDTTSNFEGQNSTPKILRRMHAQQEAKVLVDLAEESDEIYKFIISDLRRTRMAAIAMKKSNLAISDGVSPLESGQNVNQNCLSEEESEPELTIRNPRNAQTKGRKKNGQKNTQNCRFKSGIELSHAQQVAVKRKACHECGESDHNSRTCKKRNQND