AlfalfaGEDB | MS.gene62868

M. sativa cultivar XinJiangDaYe / MS.gene62868

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62868.t1	XP_003608762.1	100	144	0	0	1	144	1	144	2.70E-80	307.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62868.t1	Q9FWX2	86.8	144	19	0	1	144	1	144	5.6e-74	278.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62868.t1	G7JK47	100.0	144	0	0	1	144	1	144	2.0e-80	307.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62868.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62868.t1	MTR_4g101680	100.000	144	0	0	1	144	1	144	8.45e-107	308
MS.gene62868.t1	MTR_4g036030	86.806	144	19	0	1	144	1	144	4.37e-96	281
MS.gene62868.t1	MTR_5g012080	87.500	144	17	1	1	143	1	144	5.01e-95	278
MS.gene62868.t1	MTR_5g021710	82.143	140	25	0	5	144	6	145	6.17e-87	258
MS.gene62868.t1	MTR_8g076110	80.000	140	28	0	5	144	4	143	7.41e-84	248
MS.gene62868.t1	MTR_8g024480	80.435	138	27	0	1	138	9	146	3.63e-79	240
MS.gene62868.t1	MTR_1g096430	74.306	144	37	0	1	144	1	144	3.73e-79	237
MS.gene62868.t1	MTR_4g035590	75.000	140	30	1	7	141	8	147	2.20e-74	226
MS.gene62868.t1	MTR_2g062730	74.101	139	35	1	7	144	10	148	3.04e-73	223
MS.gene62868.t1	MTR_2g064090	59.124	137	55	1	7	143	6	141	6.34e-59	186

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62868.t1	AT1G12260	86.806	144	19	1	144	1	144	3.50e-95	278
MS.gene62868.t1	AT1G12260	86.806	144	19	1	144	1	144	9.03e-95	279
MS.gene62868.t1	AT1G62700	85.417	144	21	1	144	1	144	5.25e-93	275
MS.gene62868.t1	AT1G62700	85.417	144	21	1	144	1	144	5.25e-93	275
MS.gene62868.t1	AT2G18060	81.884	138	25	7	144	9	146	4.77e-85	253
MS.gene62868.t1	AT2G18060	81.884	138	25	7	144	9	146	4.77e-85	253
MS.gene62868.t1	AT4G36160	81.884	138	25	7	144	14	151	6.79e-85	253
MS.gene62868.t1	AT4G36160	81.884	138	25	7	144	10	147	7.11e-85	253
MS.gene62868.t1	AT4G36160	81.884	138	25	7	144	10	147	7.11e-85	253
MS.gene62868.t1	AT5G62380	80.142	141	28	1	141	1	141	1.24e-84	251

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Find 28 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGAAGTATCCAAC+AGG	0.484211	8.1:+21991702	MS.gene62868:CDS
AACTTGTTGATTACTACCTC+AGG	0.500136	8.1:+21991291	MS.gene62868:CDS
AATATACTCAAAACAATTTC+TGG	0.230974	8.1:+21991785	MS.gene62868:CDS
AATCAGATTTCTGTCCATTT+GGG	0.310097	8.1:-21991848	None:intergenic
ACGAATAGAGCAACAAAAGC+AGG	0.489114	8.1:+21991732	MS.gene62868:CDS
ACTCAAAACAATTTCTGGTT+GGG	0.418569	8.1:+21991790	MS.gene62868:CDS
ATCAGATTTCTGTCCATTTG+GGG	0.575645	8.1:-21991847	None:intergenic
ATCTCTATAAAATTGAACCA+TGG	0.552588	8.1:+21991363	MS.gene62868:CDS
ATTGAACCATGGGATCTTCA+AGG	0.495896	8.1:+21991374	MS.gene62868:CDS
CAAACAGAATTATGCAAAAT+AGG	0.259681	8.1:+21991642	MS.gene62868:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAGATTTCTGTCCATTT+GGG	-	chr8.1:21991851-21991870	None:intergenic	30.0%
CGTCTTGAAACTAATCAAAA+TGG	+	chr8.1:21991888-21991907	MS.gene62868:CDS	30.0%
ATCAGATTTCTGTCCATTTG+GGG	-	chr8.1:21991850-21991869	None:intergenic	35.0%
CAAATGGACAGAAATCTGAT+TGG	+	chr8.1:21991850-21991869	MS.gene62868:CDS	35.0%
CAATCAGATTTCTGTCCATT+TGG	-	chr8.1:21991852-21991871	None:intergenic	35.0%
GAAGTGATGAACAAAATGAC+TGG	+	chr8.1:21991664-21991683	MS.gene62868:CDS	35.0%
TCAACAAGTTCTTCATCAGT+TGG	-	chr8.1:21991281-21991300	None:intergenic	35.0%
ACGAATAGAGCAACAAAAGC+AGG	+	chr8.1:21991732-21991751	MS.gene62868:CDS	40.0%
ATTGAACCATGGGATCTTCA+AGG	+	chr8.1:21991374-21991393	MS.gene62868:CDS	40.0%
TATTGCTTTGTCTCTTCCTG+TGG	-	chr8.1:21991769-21991788	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	21991236	21991920	21991236	ID=MS.gene62868
chr8.1	mRNA	21991236	21991920	21991236	ID=MS.gene62868.t1;Parent=MS.gene62868
chr8.1	exon	21991236	21991395	21991236	ID=MS.gene62868.t1.exon1;Parent=MS.gene62868.t1
chr8.1	CDS	21991236	21991395	21991236	ID=cds.MS.gene62868.t1;Parent=MS.gene62868.t1
chr8.1	exon	21991649	21991920	21991649	ID=MS.gene62868.t1.exon2;Parent=MS.gene62868.t1
chr8.1	CDS	21991649	21991920	21991649	ID=cds.MS.gene62868.t1;Parent=MS.gene62868.t1

Gene Sequence

>MS.gene62868

ATGAATACATTTTCACATGTACCTCCAGGCTTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTCAGGAAGAAGGTATCGTCTAAAAAGATTGATCTCGATGTCATCAAAGACGTTGATCTCTATAAAATTGAACCATGGGATCTTCAAGGTATCGATTCGACTTCTATACTGCAAAGCCTTAACAATCAATCCATATTATCTCAGAATTTTTTTTATGAAAACAAAAAATTATACTAGGAGTACAAGGAGTACGGTATTAAACGTAACAATAAATTTTTTTTACTCTTAACTTATTAAAATTTGACAATACATTCGTATAATATGAACAAATATATATGTATCATAGAGTATTACTATTTATGATAACACAACATTTGCTATTGGTGATGTATTGCAAACAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCAACAGGAACTAGAACGAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGACAAAGCAATATACTCAAAACAATTTCTGGTTGGGATGAGAAAGACTCTAGTATTTTACAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTATCGTCTTGAAACTAATCAAAATGGAATTTCTCAG

Protein sequence

>MS.gene62868.t1

MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGISQ