Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63091.t1 | XP_003628592.1 | 92.7 | 449 | 31 | 1 | 1 | 449 | 1 | 447 | 2.60E-246 | 860.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63091.t1 | Q338B9 | 69.6 | 381 | 111 | 4 | 62 | 442 | 129 | 504 | 3.3e-157 | 556.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63091.t1 | G7LEM3 | 92.7 | 449 | 31 | 1 | 1 | 449 | 1 | 447 | 1.9e-246 | 860.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63091.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63091.t1 | MTR_8g062330 | 92.650 | 449 | 31 | 1 | 1 | 449 | 1 | 447 | 0.0 | 863 |
| MS.gene63091.t1 | MTR_7g096040 | 75.430 | 407 | 92 | 6 | 44 | 449 | 143 | 542 | 0.0 | 643 |
| MS.gene63091.t1 | MTR_8g070660 | 35.135 | 111 | 65 | 3 | 339 | 442 | 88 | 198 | 4.53e-12 | 66.6 |
| MS.gene63091.t1 | MTR_8g070660 | 35.135 | 111 | 65 | 3 | 339 | 442 | 88 | 198 | 7.48e-12 | 67.0 |
| MS.gene63091.t1 | MTR_2g018270 | 39.785 | 93 | 53 | 2 | 347 | 437 | 85 | 176 | 7.91e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63091.t1 | AT3G54610 | 67.419 | 399 | 121 | 5 | 51 | 449 | 179 | 568 | 0.0 | 572 |
| MS.gene63091.t1 | AT2G34900 | 35.714 | 98 | 60 | 2 | 347 | 442 | 6 | 102 | 8.14e-13 | 68.9 |
| MS.gene63091.t1 | AT2G34900 | 35.135 | 111 | 64 | 4 | 339 | 442 | 103 | 212 | 1.04e-12 | 69.7 |
| MS.gene63091.t1 | AT1G76380 | 46.269 | 67 | 35 | 1 | 361 | 427 | 165 | 230 | 6.28e-11 | 65.1 |
| MS.gene63091.t1 | AT1G76380 | 46.269 | 67 | 35 | 1 | 361 | 427 | 166 | 231 | 7.24e-11 | 64.7 |
| MS.gene63091.t1 | AT1G76380 | 46.269 | 67 | 35 | 1 | 361 | 427 | 165 | 230 | 7.42e-11 | 64.7 |
Find 107 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGTCTATAATGGTTATA+AGG | 0.249320 | 8.1:+42875999 | MS.gene63091:CDS |
| TGTAGCACATTTGTAATATA+TGG | 0.254796 | 8.1:-42876845 | None:intergenic |
| TTATAACCATTATAGACTTA+TGG | 0.281569 | 8.1:-42875997 | None:intergenic |
| CGCGAATGGCCGTACATATC+AGG | 0.282683 | 8.1:-42876532 | None:intergenic |
| AACGTACTCCTTTGGCATAT+TGG | 0.307676 | 8.1:-42875951 | None:intergenic |
| AGTGATGATCAACAAGTAAA+AGG | 0.317455 | 8.1:+42876103 | MS.gene63091:CDS |
| CTCATTGTCTTTAGATCCAT+TGG | 0.327319 | 8.1:-42876721 | None:intergenic |
| CGAAGGCCGAAGGGCCAGTC+TGG | 0.327450 | 8.1:-42875592 | None:intergenic |
| ACGTACTCCTTTGGCATATT+GGG | 0.332227 | 8.1:-42875950 | None:intergenic |
| TGCATTCTCAAACATTCTTC+TGG | 0.343144 | 8.1:-42876800 | None:intergenic |
| AACAGTTCAGCCGCTACTTC+CGG | 0.350067 | 8.1:+42875716 | MS.gene63091:CDS |
| ATGTCATCAACCATTCTATT+AGG | 0.359040 | 8.1:-42876481 | None:intergenic |
| GTTGATGCACAGAGTGTTCC+TGG | 0.361168 | 8.1:+42876676 | MS.gene63091:CDS |
| TCCTTGAATGGCCAAGCATC+AGG | 0.365625 | 8.1:-42876649 | None:intergenic |
| GGTCATGCATTTCCTTTATG+AGG | 0.367710 | 8.1:-42876624 | None:intergenic |
| TGGCATATTGGGAAGTTGTC+TGG | 0.378798 | 8.1:-42875939 | None:intergenic |
| GTACGTTGTCCGACTTGTTA+TGG | 0.380549 | 8.1:+42875967 | MS.gene63091:CDS |
| CGGTTCTGTCCCCGACTTTG+TGG | 0.384446 | 8.1:+42875736 | MS.gene63091:CDS |
| GTTTATGCGTTCCCTCATAA+AGG | 0.384946 | 8.1:+42876612 | MS.gene63091:CDS |
| TATGCTGATAATAATGCTAT+TGG | 0.385429 | 8.1:+42876199 | MS.gene63091:CDS |
| TGTCCCCGACTTTGTGGTTA+AGG | 0.391230 | 8.1:+42875742 | MS.gene63091:CDS |
| ATAGTTGATAAATCAGTATA+AGG | 0.397900 | 8.1:-42876340 | None:intergenic |
| CTCAAGAAAGAGGAAGAATC+TGG | 0.399688 | 8.1:+42875836 | MS.gene63091:CDS |
| TAAGTCTATAATGGTTATAA+GGG | 0.403247 | 8.1:+42876000 | MS.gene63091:CDS |
| CCCTGATGCTTGGCCATTCA+AGG | 0.404768 | 8.1:+42876648 | MS.gene63091:CDS |
| TAGGAACCATAAGTCTATAA+TGG | 0.415215 | 8.1:+42875991 | MS.gene63091:CDS |
| GATCAACAAGTAAAAGGTTA+TGG | 0.418177 | 8.1:+42876109 | MS.gene63091:CDS |
| TCAACCATTCTATTAGGAAT+AGG | 0.419465 | 8.1:-42876475 | None:intergenic |
| AAATCAGTATAAGGAAGCTT+TGG | 0.423435 | 8.1:-42876331 | None:intergenic |
| TTTCTTGAGATTCTCTTCCC+TGG | 0.429530 | 8.1:-42875822 | None:intergenic |
| TAAGAGGTGGTTACAGTGCC+AGG | 0.431578 | 8.1:+42875804 | MS.gene63091:CDS |
| CAGATATGTGTTTGCGCTTG+TGG | 0.433930 | 8.1:-42875628 | None:intergenic |
| AGGGAGCATAATCGCGTTGT+TGG | 0.436622 | 8.1:+42876019 | MS.gene63091:CDS |
| CACAAAGTCGGGGACAGAAC+CGG | 0.441013 | 8.1:-42875735 | None:intergenic |
| GGCTGAACTGTTCACAGAAC+CGG | 0.441410 | 8.1:-42875705 | None:intergenic |
| TCGTCCTTAACCACAAAGTC+GGG | 0.441549 | 8.1:-42875746 | None:intergenic |
| TGTCACAATATTGTTTATGC+TGG | 0.443276 | 8.1:+42876415 | MS.gene63091:CDS |
| TCGATGGGAAGGTTATATAA+AGG | 0.445441 | 8.1:+42876270 | MS.gene63091:CDS |
| CAGTATGCACGTGATGTAGA+TGG | 0.451140 | 8.1:+42876157 | MS.gene63091:CDS |
| TCTTCGATGCACAACTTCAC+CGG | 0.454616 | 8.1:+42875686 | MS.gene63091:CDS |
| TCGCGGTTTAGAGCTTTAGA+TGG | 0.458541 | 8.1:+42876550 | MS.gene63091:CDS |
| CTGATATGTACGGCCATTCG+CGG | 0.465853 | 8.1:+42876533 | MS.gene63091:CDS |
| GCGAACCTCTGATTTGCATA+TGG | 0.467524 | 8.1:-42876058 | None:intergenic |
| GGAACACTCTGTGCATCAAC+AGG | 0.468144 | 8.1:-42876673 | None:intergenic |
| GGTTATATAAAGGATTATGA+TGG | 0.483037 | 8.1:+42876280 | MS.gene63091:CDS |
| TATTCCTATTCCTAATAGAA+TGG | 0.489250 | 8.1:+42876471 | MS.gene63091:CDS |
| AGTCGGACAACGTACTCCTT+TGG | 0.490846 | 8.1:-42875959 | None:intergenic |
| GCATCAACAGGTTCCTTGAA+TGG | 0.491570 | 8.1:-42876661 | None:intergenic |
| ATGCTATCAACGAAACCATA+TGG | 0.498728 | 8.1:-42875901 | None:intergenic |
| CATCCAGCCTCTTTCAAACC+AGG | 0.501793 | 8.1:-42876505 | None:intergenic |
| ATCCCTGGTTTGAAAGAGGC+TGG | 0.505140 | 8.1:+42876502 | MS.gene63091:CDS |
| TGACGGTGTTGATGACCATA+TGG | 0.509355 | 8.1:+42875886 | MS.gene63091:CDS |
| TTCAGTGAATATATTTGTTG+AGG | 0.512080 | 8.1:-42875771 | None:intergenic |
| GAGCATAATCGCGTTGTTGG+AGG | 0.514705 | 8.1:+42876022 | MS.gene63091:CDS |
| AAAGACAATGAGTGAGAGGC+TGG | 0.516667 | 8.1:+42876732 | MS.gene63091:CDS |
| TATGATCCGTCGGCAAAGAC+AGG | 0.524541 | 8.1:+42876360 | MS.gene63091:CDS |
| GTGACAATGCTCCTCCAGTC+CGG | 0.528618 | 8.1:+42876895 | MS.gene63091:CDS |
| GTTATATAAAGGATTATGAT+GGG | 0.531624 | 8.1:+42876281 | MS.gene63091:CDS |
| GAAGAAGTGGCGAAGGCCGA+AGG | 0.533161 | 8.1:-42875602 | None:intergenic |
| TTTCAGAAGAGATCAGAAGC+TGG | 0.533279 | 8.1:+42876445 | MS.gene63091:CDS |
| GGAATCCCAGACTGGCCCTT+CGG | 0.533805 | 8.1:+42875586 | MS.gene63091:CDS |
| GGAAGAGAATCTCAAGAAAG+AGG | 0.533991 | 8.1:+42875826 | MS.gene63091:CDS |
| GTCATGCATTTCCTTTATGA+GGG | 0.534322 | 8.1:-42876623 | None:intergenic |
| CTGGTTTGAAAGAGGCTGGA+TGG | 0.535917 | 8.1:+42876506 | MS.gene63091:CDS |
| TGCATGACCACCCTGATGCT+TGG | 0.542705 | 8.1:+42876638 | MS.gene63091:CDS |
| GAGTCGCGAGAAGGGTGGAA+TGG | 0.550392 | 8.1:-42875665 | None:intergenic |
| TTCGTCCTTAACCACAAAGT+CGG | 0.562725 | 8.1:-42875747 | None:intergenic |
| CTAAAGCTCTAAACCGCGAA+TGG | 0.563132 | 8.1:-42876546 | None:intergenic |
| GAAGGCCGAAGGGCCAGTCT+GGG | 0.566510 | 8.1:-42875591 | None:intergenic |
| TATGTGTTTGCGCTTGTGGA+TGG | 0.568768 | 8.1:-42875624 | None:intergenic |
| GCATCGAAGAGTCGCGAGAA+GGG | 0.569693 | 8.1:-42875673 | None:intergenic |
| CCTAAGATGGAATCCCAGAC+TGG | 0.573043 | 8.1:+42875578 | None:intergenic |
| TATATAAAGGATTATGATGG+GGG | 0.574524 | 8.1:+42876283 | MS.gene63091:CDS |
| TCACTTGGAGAGAGATCGAT+GGG | 0.581124 | 8.1:+42876255 | MS.gene63091:CDS |
| ATTTACAAAAGAGATTCACT+TGG | 0.581396 | 8.1:+42876240 | MS.gene63091:CDS |
| GGATGGACTCCTGATATGTA+CGG | 0.582260 | 8.1:+42876523 | MS.gene63091:CDS |
| TGACATCCCTGGTTTGAAAG+AGG | 0.585348 | 8.1:+42876498 | MS.gene63091:CDS |
| TTTGAATGTGTGTGCAATGA+CGG | 0.586373 | 8.1:+42875869 | MS.gene63091:CDS |
| AAGAGGTGGTTACAGTGCCA+GGG | 0.587476 | 8.1:+42875805 | MS.gene63091:CDS |
| ATTGGCTATTTCATCAAACA+AGG | 0.588299 | 8.1:+42876217 | MS.gene63091:CDS |
| TTCACTTGGAGAGAGATCGA+TGG | 0.592040 | 8.1:+42876254 | MS.gene63091:CDS |
| ATAGTGCCTGTCTTTGCCGA+CGG | 0.594963 | 8.1:-42876366 | None:intergenic |
| TGCATCGAAGAGTCGCGAGA+AGG | 0.596294 | 8.1:-42875674 | None:intergenic |
| TATGAGGGAACGCATAAACT+CGG | 0.601599 | 8.1:-42876608 | None:intergenic |
| AGAATGGTTGATGACATCCC+TGG | 0.603289 | 8.1:+42876487 | MS.gene63091:CDS |
| AATGAGTGAGAGGCTGGAGT+CGG | 0.604610 | 8.1:+42876738 | MS.gene63091:CDS |
| CCTTGAATGGCCAAGCATCA+GGG | 0.608425 | 8.1:-42876648 | None:intergenic |
| TTTATGATTTCATAATAACC+AGG | 0.609225 | 8.1:-42876694 | None:intergenic |
| TCGAAGAGTCGCGAGAAGGG+TGG | 0.613498 | 8.1:-42875670 | None:intergenic |
| GTGGATGGAAGAAGTGGCGA+AGG | 0.613879 | 8.1:-42875609 | None:intergenic |
| AAGAAGTGGCGAAGGCCGAA+GGG | 0.614868 | 8.1:-42875601 | None:intergenic |
| ATCTAAAGACAATGAGTGAG+AGG | 0.615052 | 8.1:+42876728 | MS.gene63091:CDS |
| GGGGACAGAACCGGAAGTAG+CGG | 0.615590 | 8.1:-42875726 | None:intergenic |
| TTGTCCGACTTGTTATGGAT+AGG | 0.616928 | 8.1:+42875972 | MS.gene63091:CDS |
| TTGGAGAGAGATCGATGGGA+AGG | 0.618097 | 8.1:+42876259 | MS.gene63091:CDS |
| GCGCTTGTGGATGGAAGAAG+TGG | 0.619030 | 8.1:-42875615 | None:intergenic |
| TCGCGAGAAGGGTGGAATGG+AGG | 0.623596 | 8.1:-42875662 | None:intergenic |
| CAGAAGAGATCAGAAGCTGG+AGG | 0.631156 | 8.1:+42876448 | MS.gene63091:CDS |
| ATCCAGCCTCTTTCAAACCA+GGG | 0.635327 | 8.1:-42876504 | None:intergenic |
| ATCGTCCATATGCAAATCAG+AGG | 0.635371 | 8.1:+42876053 | MS.gene63091:CDS |
| TTATATAAAGGATTATGATG+GGG | 0.635609 | 8.1:+42876282 | MS.gene63091:CDS |
| ATTTATCAACTATGATCCGT+CGG | 0.639900 | 8.1:+42876350 | MS.gene63091:CDS |
| GGTTCCTATCCATAACAAGT+CGG | 0.663748 | 8.1:-42875976 | None:intergenic |
| ACAACTTCCCAATATGCCAA+AGG | 0.664198 | 8.1:+42875943 | MS.gene63091:CDS |
| CAAGCGCAAACACATATCTG+AGG | 0.695714 | 8.1:+42875631 | MS.gene63091:CDS |
| CGTCCTTAACCACAAAGTCG+GGG | 0.697409 | 8.1:-42875745 | None:intergenic |
| TGAATGGCCAAGCATCAGGG+TGG | 0.741876 | 8.1:-42876645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTCTATAATGGTTATA+AGG | + | chr8.1:42875999-42876018 | MS.gene63091:CDS | 20.0% |
| !! | GTTATATAAAGGATTATGAT+GGG | + | chr8.1:42876281-42876300 | MS.gene63091:CDS | 20.0% |
| !! | TAAGTCTATAATGGTTATAA+GGG | + | chr8.1:42876000-42876019 | MS.gene63091:CDS | 20.0% |
| !! | TGAAATCATAAAAAATCCAA+TGG | + | chr8.1:42876705-42876724 | MS.gene63091:CDS | 20.0% |
| !! | TTATAACCATTATAGACTTA+TGG | - | chr8.1:42876000-42876019 | None:intergenic | 20.0% |
| !! | TTATATAAAGGATTATGATG+GGG | + | chr8.1:42876282-42876301 | MS.gene63091:CDS | 20.0% |
| !! | TTTATGATTTCATAATAACC+AGG | - | chr8.1:42876697-42876716 | None:intergenic | 20.0% |
| !!! | ATAGTTGATAAATCAGTATA+AGG | - | chr8.1:42876343-42876362 | None:intergenic | 20.0% |
| !!! | CATTTGTAATATATGGTTTT+TGG | - | chr8.1:42876841-42876860 | None:intergenic | 20.0% |
| ! | ATTTACAAAAGAGATTCACT+TGG | + | chr8.1:42876240-42876259 | MS.gene63091:CDS | 25.0% |
| ! | GGTTATATAAAGGATTATGA+TGG | + | chr8.1:42876280-42876299 | MS.gene63091:CDS | 25.0% |
| ! | TATATAAAGGATTATGATGG+GGG | + | chr8.1:42876283-42876302 | MS.gene63091:CDS | 25.0% |
| ! | TATGCTGATAATAATGCTAT+TGG | + | chr8.1:42876199-42876218 | MS.gene63091:CDS | 25.0% |
| ! | TATTCCTATTCCTAATAGAA+TGG | + | chr8.1:42876471-42876490 | MS.gene63091:CDS | 25.0% |
| ! | TGTAGCACATTTGTAATATA+TGG | - | chr8.1:42876848-42876867 | None:intergenic | 25.0% |
| !! | TAAACTCGGTTAAATGTTTT+AGG | - | chr8.1:42876597-42876616 | None:intergenic | 25.0% |
| !! | TTCAGTGAATATATTTGTTG+AGG | - | chr8.1:42875774-42875793 | None:intergenic | 25.0% |
| !!! | TATGGTTTTTGGAGAATTAT+AGG | - | chr8.1:42876830-42876849 | None:intergenic | 25.0% |
| AAATCAGTATAAGGAAGCTT+TGG | - | chr8.1:42876334-42876353 | None:intergenic | 30.0% | |
| ACTGAAAAATTGCAGATAAG+AGG | + | chr8.1:42875788-42875807 | MS.gene63091:CDS | 30.0% | |
| AGTGATGATCAACAAGTAAA+AGG | + | chr8.1:42876103-42876122 | MS.gene63091:CDS | 30.0% | |
| ATGTCATCAACCATTCTATT+AGG | - | chr8.1:42876484-42876503 | None:intergenic | 30.0% | |
| ATTTATCAACTATGATCCGT+CGG | + | chr8.1:42876350-42876369 | MS.gene63091:CDS | 30.0% | |
| GATCAACAAGTAAAAGGTTA+TGG | + | chr8.1:42876109-42876128 | MS.gene63091:CDS | 30.0% | |
| TAGGAACCATAAGTCTATAA+TGG | + | chr8.1:42875991-42876010 | MS.gene63091:CDS | 30.0% | |
| TCAACCATTCTATTAGGAAT+AGG | - | chr8.1:42876478-42876497 | None:intergenic | 30.0% | |
| TGTCACAATATTGTTTATGC+TGG | + | chr8.1:42876415-42876434 | MS.gene63091:CDS | 30.0% | |
| ! | ATTGGCTATTTCATCAAACA+AGG | + | chr8.1:42876217-42876236 | MS.gene63091:CDS | 30.0% |
| !!! | AATGTTTTAGGTTTGTAGCA+TGG | - | chr8.1:42876585-42876604 | None:intergenic | 30.0% |
| ATCTAAAGACAATGAGTGAG+AGG | + | chr8.1:42876728-42876747 | MS.gene63091:CDS | 35.0% | |
| ATGCTATCAACGAAACCATA+TGG | - | chr8.1:42875904-42875923 | None:intergenic | 35.0% | |
| CTCATTGTCTTTAGATCCAT+TGG | - | chr8.1:42876724-42876743 | None:intergenic | 35.0% | |
| GAAAAATTGCAGATAAGAGG+TGG | + | chr8.1:42875791-42875810 | MS.gene63091:CDS | 35.0% | |
| GTCATGCATTTCCTTTATGA+GGG | - | chr8.1:42876626-42876645 | None:intergenic | 35.0% | |
| TCGATGGGAAGGTTATATAA+AGG | + | chr8.1:42876270-42876289 | MS.gene63091:CDS | 35.0% | |
| TGCATTCTCAAACATTCTTC+TGG | - | chr8.1:42876803-42876822 | None:intergenic | 35.0% | |
| TTTGAATGTGTGTGCAATGA+CGG | + | chr8.1:42875869-42875888 | MS.gene63091:CDS | 35.0% | |
| AACGTACTCCTTTGGCATAT+TGG | - | chr8.1:42875954-42875973 | None:intergenic | 40.0% | |
| ACAACTTCCCAATATGCCAA+AGG | + | chr8.1:42875943-42875962 | MS.gene63091:CDS | 40.0% | |
| ACGTACTCCTTTGGCATATT+GGG | - | chr8.1:42875953-42875972 | None:intergenic | 40.0% | |
| ATCGTCCATATGCAAATCAG+AGG | + | chr8.1:42876053-42876072 | MS.gene63091:CDS | 40.0% | |
| CTCAAGAAAGAGGAAGAATC+TGG | + | chr8.1:42875836-42875855 | MS.gene63091:CDS | 40.0% | |
| GGAAGAGAATCTCAAGAAAG+AGG | + | chr8.1:42875826-42875845 | MS.gene63091:CDS | 40.0% | |
| GGTCATGCATTTCCTTTATG+AGG | - | chr8.1:42876627-42876646 | None:intergenic | 40.0% | |
| GGTTCCTATCCATAACAAGT+CGG | - | chr8.1:42875979-42875998 | None:intergenic | 40.0% | |
| GTTTATGCGTTCCCTCATAA+AGG | + | chr8.1:42876612-42876631 | MS.gene63091:CDS | 40.0% | |
| TATGAGGGAACGCATAAACT+CGG | - | chr8.1:42876611-42876630 | None:intergenic | 40.0% | |
| TTCGTCCTTAACCACAAAGT+CGG | - | chr8.1:42875750-42875769 | None:intergenic | 40.0% | |
| TTTCAGAAGAGATCAGAAGC+TGG | + | chr8.1:42876445-42876464 | MS.gene63091:CDS | 40.0% | |
| TTTCTTGAGATTCTCTTCCC+TGG | - | chr8.1:42875825-42875844 | None:intergenic | 40.0% | |
| !! | TTGTCCGACTTGTTATGGAT+AGG | + | chr8.1:42875972-42875991 | MS.gene63091:CDS | 40.0% |
| AAAGACAATGAGTGAGAGGC+TGG | + | chr8.1:42876732-42876751 | MS.gene63091:CDS | 45.0% | |
| ATCCAGCCTCTTTCAAACCA+GGG | - | chr8.1:42876507-42876526 | None:intergenic | 45.0% | |
| CAAGCGCAAACACATATCTG+AGG | + | chr8.1:42875631-42875650 | MS.gene63091:CDS | 45.0% | |
| CAGATATGTGTTTGCGCTTG+TGG | - | chr8.1:42875631-42875650 | None:intergenic | 45.0% | |
| CAGTATGCACGTGATGTAGA+TGG | + | chr8.1:42876157-42876176 | MS.gene63091:CDS | 45.0% | |
| GCATCAACAGGTTCCTTGAA+TGG | - | chr8.1:42876664-42876683 | None:intergenic | 45.0% | |
| TATGTGTTTGCGCTTGTGGA+TGG | - | chr8.1:42875627-42875646 | None:intergenic | 45.0% | |
| TCACTTGGAGAGAGATCGAT+GGG | + | chr8.1:42876255-42876274 | MS.gene63091:CDS | 45.0% | |
| TCGTCCTTAACCACAAAGTC+GGG | - | chr8.1:42875749-42875768 | None:intergenic | 45.0% | |
| TCTTCGATGCACAACTTCAC+CGG | + | chr8.1:42875686-42875705 | MS.gene63091:CDS | 45.0% | |
| TGGCATATTGGGAAGTTGTC+TGG | - | chr8.1:42875942-42875961 | None:intergenic | 45.0% | |
| TTCACTTGGAGAGAGATCGA+TGG | + | chr8.1:42876254-42876273 | MS.gene63091:CDS | 45.0% | |
| ! | GCGAACCTCTGATTTGCATA+TGG | - | chr8.1:42876061-42876080 | None:intergenic | 45.0% |
| ! | GGATGGACTCCTGATATGTA+CGG | + | chr8.1:42876523-42876542 | MS.gene63091:CDS | 45.0% |
| ! | TGACATCCCTGGTTTGAAAG+AGG | + | chr8.1:42876498-42876517 | MS.gene63091:CDS | 45.0% |
| ! | TTATGATGGGGGAACTCTCA+TGG | + | chr8.1:42876294-42876313 | MS.gene63091:CDS | 45.0% |
| !! | AGAATGGTTGATGACATCCC+TGG | + | chr8.1:42876487-42876506 | MS.gene63091:CDS | 45.0% |
| !! | CTAAAGCTCTAAACCGCGAA+TGG | - | chr8.1:42876549-42876568 | None:intergenic | 45.0% |
| !! | GTACGTTGTCCGACTTGTTA+TGG | + | chr8.1:42875967-42875986 | MS.gene63091:CDS | 45.0% |
| !! | TCGCGGTTTAGAGCTTTAGA+TGG | + | chr8.1:42876550-42876569 | MS.gene63091:CDS | 45.0% |
| !! | TGACGGTGTTGATGACCATA+TGG | + | chr8.1:42875886-42875905 | MS.gene63091:CDS | 45.0% |
| !!! | ACTGAATTTTGAAGCCGGAC+TGG | - | chr8.1:42876912-42876931 | None:intergenic | 45.0% |
| AACAGTTCAGCCGCTACTTC+CGG | + | chr8.1:42875716-42875735 | MS.gene63091:CDS | 50.0% | |
| AAGAGGTGGTTACAGTGCCA+GGG | + | chr8.1:42875805-42875824 | MS.gene63091:CDS | 50.0% | |
| AATGAGTGAGAGGCTGGAGT+CGG | + | chr8.1:42876738-42876757 | MS.gene63091:CDS | 50.0% | |
| AGTCGGACAACGTACTCCTT+TGG | - | chr8.1:42875962-42875981 | None:intergenic | 50.0% | |
| ATAGTGCCTGTCTTTGCCGA+CGG | - | chr8.1:42876369-42876388 | None:intergenic | 50.0% | |
| CAGAAGAGATCAGAAGCTGG+AGG | + | chr8.1:42876448-42876467 | MS.gene63091:CDS | 50.0% | |
| CATCCAGCCTCTTTCAAACC+AGG | - | chr8.1:42876508-42876527 | None:intergenic | 50.0% | |
| CCTTGAATGGCCAAGCATCA+GGG | - | chr8.1:42876651-42876670 | None:intergenic | 50.0% | |
| CGTCCTTAACCACAAAGTCG+GGG | - | chr8.1:42875748-42875767 | None:intergenic | 50.0% | |
| CTGATATGTACGGCCATTCG+CGG | + | chr8.1:42876533-42876552 | MS.gene63091:CDS | 50.0% | |
| GAGCATAATCGCGTTGTTGG+AGG | + | chr8.1:42876022-42876041 | MS.gene63091:CDS | 50.0% | |
| GGAACACTCTGTGCATCAAC+AGG | - | chr8.1:42876676-42876695 | None:intergenic | 50.0% | |
| GGCTGAACTGTTCACAGAAC+CGG | - | chr8.1:42875708-42875727 | None:intergenic | 50.0% | |
| TAAGAGGTGGTTACAGTGCC+AGG | + | chr8.1:42875804-42875823 | MS.gene63091:CDS | 50.0% | |
| TATGATCCGTCGGCAAAGAC+AGG | + | chr8.1:42876360-42876379 | MS.gene63091:CDS | 50.0% | |
| TCCTTGAATGGCCAAGCATC+AGG | - | chr8.1:42876652-42876671 | None:intergenic | 50.0% | |
| TGTCCCCGACTTTGTGGTTA+AGG | + | chr8.1:42875742-42875761 | MS.gene63091:CDS | 50.0% | |
| TTGGAGAGAGATCGATGGGA+AGG | + | chr8.1:42876259-42876278 | MS.gene63091:CDS | 50.0% | |
| ! | AGGGAGCATAATCGCGTTGT+TGG | + | chr8.1:42876019-42876038 | MS.gene63091:CDS | 50.0% |
| ! | ATCCCTGGTTTGAAAGAGGC+TGG | + | chr8.1:42876502-42876521 | MS.gene63091:CDS | 50.0% |
| ! | CTGGTTTGAAAGAGGCTGGA+TGG | + | chr8.1:42876506-42876525 | MS.gene63091:CDS | 50.0% |
| ! | GTTGATGCACAGAGTGTTCC+TGG | + | chr8.1:42876676-42876695 | MS.gene63091:CDS | 50.0% |
| !!! | GAATTTTGAAGCCGGACTGG+AGG | - | chr8.1:42876909-42876928 | None:intergenic | 50.0% |
| AAGAAGTGGCGAAGGCCGAA+GGG | - | chr8.1:42875604-42875623 | None:intergenic | 55.0% | |
| CACAAAGTCGGGGACAGAAC+CGG | - | chr8.1:42875738-42875757 | None:intergenic | 55.0% | |
| CCCTGATGCTTGGCCATTCA+AGG | + | chr8.1:42876648-42876667 | MS.gene63091:CDS | 55.0% | |
| CGCGAATGGCCGTACATATC+AGG | - | chr8.1:42876535-42876554 | None:intergenic | 55.0% | |
| GCATCGAAGAGTCGCGAGAA+GGG | - | chr8.1:42875676-42875695 | None:intergenic | 55.0% | |
| GCGCTTGTGGATGGAAGAAG+TGG | - | chr8.1:42875618-42875637 | None:intergenic | 55.0% | |
| GTGACAATGCTCCTCCAGTC+CGG | + | chr8.1:42876895-42876914 | MS.gene63091:CDS | 55.0% | |
| GTGGATGGAAGAAGTGGCGA+AGG | - | chr8.1:42875612-42875631 | None:intergenic | 55.0% | |
| TGAATGGCCAAGCATCAGGG+TGG | - | chr8.1:42876648-42876667 | None:intergenic | 55.0% | |
| TGCATCGAAGAGTCGCGAGA+AGG | - | chr8.1:42875677-42875696 | None:intergenic | 55.0% | |
| TGCATGACCACCCTGATGCT+TGG | + | chr8.1:42876638-42876657 | MS.gene63091:CDS | 55.0% | |
| CGGTTCTGTCCCCGACTTTG+TGG | + | chr8.1:42875736-42875755 | MS.gene63091:CDS | 60.0% | |
| GAAGAAGTGGCGAAGGCCGA+AGG | - | chr8.1:42875605-42875624 | None:intergenic | 60.0% | |
| GAGTCGCGAGAAGGGTGGAA+TGG | - | chr8.1:42875668-42875687 | None:intergenic | 60.0% | |
| GGGGACAGAACCGGAAGTAG+CGG | - | chr8.1:42875729-42875748 | None:intergenic | 60.0% | |
| TCGAAGAGTCGCGAGAAGGG+TGG | - | chr8.1:42875673-42875692 | None:intergenic | 60.0% | |
| TCGCGAGAAGGGTGGAATGG+AGG | - | chr8.1:42875665-42875684 | None:intergenic | 60.0% | |
| ! | GGAATCCCAGACTGGCCCTT+CGG | + | chr8.1:42875586-42875605 | MS.gene63091:CDS | 60.0% |
| GAAGGCCGAAGGGCCAGTCT+GGG | - | chr8.1:42875594-42875613 | None:intergenic | 65.0% | |
| CGAAGGCCGAAGGGCCAGTC+TGG | - | chr8.1:42875595-42875614 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 42875584 | 42876933 | 42875584 | ID=MS.gene63091 |
| chr8.1 | mRNA | 42875584 | 42876933 | 42875584 | ID=MS.gene63091.t1;Parent=MS.gene63091 |
| chr8.1 | exon | 42875584 | 42876933 | 42875584 | ID=MS.gene63091.t1.exon1;Parent=MS.gene63091.t1 |
| chr8.1 | CDS | 42875584 | 42876933 | 42875584 | ID=cds.MS.gene63091.t1;Parent=MS.gene63091.t1 |
| Gene Sequence |
| Protein sequence |
