Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63226.t1 | XP_013445767.1 | 87.1 | 272 | 26 | 2 | 1 | 268 | 1 | 267 | 1.30E-115 | 426 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63226.t1 | Q9M9S3 | 71.1 | 187 | 54 | 0 | 82 | 268 | 77 | 263 | 8.2e-79 | 295.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63226.t1 | A0A072TSF9 | 87.1 | 272 | 26 | 2 | 1 | 268 | 1 | 267 | 9.2e-116 | 426.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene63226.t1 | TF | Whirly |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63226.t1 | MTR_8g468570 | 91.176 | 272 | 15 | 3 | 1 | 268 | 1 | 267 | 6.93e-148 | 414 |
MS.gene63226.t1 | MTR_5g038560 | 57.848 | 223 | 87 | 3 | 49 | 268 | 43 | 261 | 1.13e-83 | 251 |
MS.gene63226.t1 | MTR_7g116270 | 37.129 | 202 | 117 | 4 | 71 | 268 | 31 | 226 | 6.63e-47 | 156 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63226.t1 | AT1G14410 | 62.613 | 222 | 78 | 1 | 47 | 268 | 47 | 263 | 9.42e-103 | 300 |
MS.gene63226.t1 | AT2G02740 | 61.991 | 221 | 77 | 3 | 49 | 268 | 54 | 268 | 1.35e-96 | 285 |
MS.gene63226.t1 | AT1G71260 | 43.293 | 164 | 93 | 0 | 85 | 248 | 53 | 216 | 5.83e-50 | 164 |
Find 76 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCGGAATACTCCGGATTTA+TGG | 0.234925 | 8.4:-41915167 | None:intergenic |
AGCAGCCTTCCCTTTGTAAA+TGG | 0.248567 | 8.4:-41911666 | None:intergenic |
GGTGTAGTGGGAGGAGGAGG+GGG | 0.250693 | 8.4:-41911364 | None:intergenic |
GGGTGTAGTGGGAGGAGGAG+GGG | 0.309825 | 8.4:-41911365 | None:intergenic |
TATATCATGCCATACCTTCT+AGG | 0.331839 | 8.4:+41915124 | MS.gene63226:CDS |
CAGGGGCATACAAGATATCT+AGG | 0.351989 | 8.4:+41912602 | MS.gene63226:CDS |
ACCACCGGAATTCGCGCCTT+TGG | 0.357831 | 8.4:+41911706 | MS.gene63226:CDS |
GTGTAGTGGGAGGAGGAGGG+GGG | 0.362307 | 8.4:-41911363 | None:intergenic |
ACATCCAAAGGCGCGAATTC+CGG | 0.385464 | 8.4:-41911710 | None:intergenic |
TGTATCAAAAGCAGAGTTAT+CGG | 0.391553 | 8.4:+41914465 | MS.gene63226:CDS |
GGGGTGTAGTGGGAGGAGGA+GGG | 0.394887 | 8.4:-41911366 | None:intergenic |
CAAAGGTGTGCCAACCTAGA+AGG | 0.402042 | 8.4:-41915138 | None:intergenic |
AACAATGCTAATCCAAGATA+TGG | 0.413675 | 8.4:+41915196 | MS.gene63226:CDS |
CTTCAGTTTGCGCCCTCTGT+TGG | 0.417534 | 8.4:+41912640 | MS.gene63226:CDS |
GAAGTACCTGAAGGATTGTT+GGG | 0.420760 | 8.4:-41911388 | None:intergenic |
CATGTTATCTGTGGATGAAA+TGG | 0.422705 | 8.4:+41913274 | MS.gene63226:CDS |
TCGTAGTCTCCACCATATCT+TGG | 0.423400 | 8.4:-41915208 | None:intergenic |
GGCGCGAATTCCGGTGGTCT+AGG | 0.461203 | 8.4:-41911701 | None:intergenic |
AGTTGGAGCTTTGCCACCTA+GGG | 0.463185 | 8.4:+41911628 | MS.gene63226:intron |
AGAAGTACCTGAAGGATTGT+TGG | 0.466680 | 8.4:-41911389 | None:intergenic |
TAGTTGGAGCTTTGCCACCT+AGG | 0.466878 | 8.4:+41911627 | MS.gene63226:intron |
TTGGTCCGCGTCAATATGAT+TGG | 0.481663 | 8.4:+41912659 | MS.gene63226:CDS |
AGACTACGAATGGAACAGAT+AGG | 0.494279 | 8.4:+41915222 | MS.gene63226:CDS |
ATATGATTGGAATAGAAAAC+AGG | 0.497404 | 8.4:+41912672 | MS.gene63226:CDS |
AAACCAGAACCATCCGGAAA+AGG | 0.498684 | 8.4:-41913916 | None:intergenic |
GTGAAGGGTTTGAATTTGAA+AGG | 0.505474 | 8.4:-41911295 | None:intergenic |
TTGGTCATTCCATTTACAAA+GGG | 0.507287 | 8.4:+41911657 | MS.gene63226:CDS |
AACTACCTTCCGCCTTTGAA+AGG | 0.515428 | 8.4:-41913347 | None:intergenic |
GTGTGATTAGCCTTGGTGCA+AGG | 0.517803 | 8.4:+41913300 | MS.gene63226:CDS |
CTTTGCAAACTCCATAAATC+CGG | 0.519983 | 8.4:+41915156 | MS.gene63226:CDS |
GTGTGCCAACCTAGAAGGTA+TGG | 0.520392 | 8.4:-41915133 | None:intergenic |
TGTTGTTTGTGAAAAGTTTG+AGG | 0.524480 | 8.4:-41911246 | None:intergenic |
GACTACGAATGGAACAGATA+GGG | 0.525583 | 8.4:+41915223 | MS.gene63226:CDS |
ATGTTATCTGTGGATGAAAT+GGG | 0.526542 | 8.4:+41913275 | MS.gene63226:CDS |
TTGCCACCTAGGGTTTATGT+TGG | 0.531185 | 8.4:+41911638 | MS.gene63226:CDS |
AAGAAGAAACCAGAACCATC+CGG | 0.532608 | 8.4:-41913922 | None:intergenic |
GTTGTTTGTGAAAAGTTTGA+GGG | 0.535078 | 8.4:-41911245 | None:intergenic |
CGGATTTATGGAGTTTGCAA+AGG | 0.535912 | 8.4:-41915155 | None:intergenic |
CACTATCACTCCTAGACCAC+CGG | 0.536143 | 8.4:+41911691 | MS.gene63226:CDS |
GTTGGTCATTCCATTTACAA+AGG | 0.542041 | 8.4:+41911656 | MS.gene63226:CDS |
TGTGATTAGCCTTGGTGCAA+GGG | 0.548806 | 8.4:+41913301 | MS.gene63226:CDS |
AGACGTCGGAGTGGCGGCAT+CGG | 0.552194 | 8.4:-41911321 | None:intergenic |
TTCGCCGCTGCGGAATACTC+CGG | 0.560202 | 8.4:-41915175 | None:intergenic |
TCATTCCATTTACAAAGGGA+AGG | 0.568592 | 8.4:+41911661 | MS.gene63226:CDS |
TGATGAAGGCAAAGTCAGAA+AGG | 0.570422 | 8.4:+41913879 | MS.gene63226:CDS |
ACTACGAATGGAACAGATAG+GGG | 0.572940 | 8.4:+41915224 | MS.gene63226:CDS |
TCATGCCATACCTTCTAGGT+TGG | 0.573049 | 8.4:+41915128 | MS.gene63226:CDS |
GGTTGAAGACGTCGGAGTGG+CGG | 0.579199 | 8.4:-41911327 | None:intergenic |
ATTAGCATTGTTCGCCGCTG+CGG | 0.595298 | 8.4:-41915185 | None:intergenic |
TCAAGACAAAACTGCGAACG+TGG | 0.600551 | 8.4:+41914423 | MS.gene63226:CDS |
GTGGCGGCATCGGATAGTGA+AGG | 0.602715 | 8.4:-41911311 | None:intergenic |
AATGCTAATCCAAGATATGG+TGG | 0.607036 | 8.4:+41915199 | MS.gene63226:CDS |
ATGGGAAGTGTGATTAGCCT+TGG | 0.609938 | 8.4:+41913293 | MS.gene63226:CDS |
ATGATCCTTTCAAAGGCGGA+AGG | 0.610678 | 8.4:+41913342 | MS.gene63226:CDS |
ATATTGACGCGGACCAACAG+AGG | 0.614731 | 8.4:-41912653 | None:intergenic |
TTTCATGATCCTTTCAAAGG+CGG | 0.614878 | 8.4:+41913338 | MS.gene63226:CDS |
GAAGATGTTGATGAGAGTGA+TGG | 0.614882 | 8.4:-41911205 | None:intergenic |
GAATGACCAACATAAACCCT+AGG | 0.616287 | 8.4:-41911644 | None:intergenic |
AGGGGCATACAAGATATCTA+GGG | 0.628813 | 8.4:+41912603 | MS.gene63226:CDS |
ACGCTTATACTTACATCCAA+AGG | 0.634632 | 8.4:-41911722 | None:intergenic |
AAGTACCTGAAGGATTGTTG+GGG | 0.636095 | 8.4:-41911387 | None:intergenic |
TCCAAAGGCGCGAATTCCGG+TGG | 0.638065 | 8.4:-41911707 | None:intergenic |
CTATTCCAATCATATTGACG+CGG | 0.644850 | 8.4:-41912664 | None:intergenic |
GCAGCTGTTCATGTTATCTG+TGG | 0.648047 | 8.4:+41913265 | MS.gene63226:intron |
TATTGACGCGGACCAACAGA+GGG | 0.649243 | 8.4:-41912652 | None:intergenic |
AAGGGTTGAAGACGTCGGAG+TGG | 0.654367 | 8.4:-41911330 | None:intergenic |
TGGCGGCATCGGATAGTGAA+GGG | 0.656291 | 8.4:-41911310 | None:intergenic |
GATATGGTGGAGACTACGAA+TGG | 0.656703 | 8.4:+41915212 | MS.gene63226:CDS |
GATGTTGATGAGAGTGATGG+TGG | 0.660347 | 8.4:-41911202 | None:intergenic |
AGGGGAAGGGTTGAAGACGT+CGG | 0.662787 | 8.4:-41911335 | None:intergenic |
GCATACAAGATATCTAGGGA+TGG | 0.666950 | 8.4:+41912607 | MS.gene63226:CDS |
CACAAGACTCCCTTGCACCA+AGG | 0.667591 | 8.4:-41913310 | None:intergenic |
AGTACCTGAAGGATTGTTGG+GGG | 0.683200 | 8.4:-41911386 | None:intergenic |
TGACCAACATAAACCCTAGG+TGG | 0.694993 | 8.4:-41911641 | None:intergenic |
GTACCTGAAGGATTGTTGGG+GGG | 0.710902 | 8.4:-41911385 | None:intergenic |
AAATCCGGAGTATTCCGCAG+CGG | 0.752636 | 8.4:+41915171 | MS.gene63226:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTGTGTAATTAATTAATT+AGG | - | chr8.4:41914209-41914228 | None:intergenic | 10.0% |
!!! | AAAATGAAACTTTTTTAAAA+TGG | - | chr8.4:41911474-41911493 | None:intergenic | 10.0% |
!!! | AAATGAAACTTTTTTAAAAT+GGG | - | chr8.4:41911473-41911492 | None:intergenic | 10.0% |
!! | AAATGAAATATATCTAGATT+CGG | - | chr8.4:41913747-41913766 | None:intergenic | 15.0% |
!! | TATTAAATGAATCTAAAAAG+TGG | - | chr8.4:41912064-41912083 | None:intergenic | 15.0% |
!! | TGATACAAAAATTGAAAATA+AGG | - | chr8.4:41913977-41913996 | None:intergenic | 15.0% |
!!! | AAAGTTTCATTTTTTGTTTT+TGG | + | chr8.4:41911481-41911500 | MS.gene63226:intron | 15.0% |
!!! | AATGAAACTTTTTTAAAATG+GGG | - | chr8.4:41911472-41911491 | None:intergenic | 15.0% |
!!! | TTTATTATGGCATTTTTTAA+AGG | + | chr8.4:41914397-41914416 | MS.gene63226:intron | 15.0% |
!! | AAATACTATGTGATGAAATT+TGG | + | chr8.4:41912846-41912865 | MS.gene63226:intron | 20.0% |
!! | AATACTATGTGATGAAATTT+GGG | + | chr8.4:41912847-41912866 | MS.gene63226:intron | 20.0% |
!! | ACTATGTATAATGAAATTGT+TGG | + | chr8.4:41911528-41911547 | MS.gene63226:intron | 20.0% |
!! | TACTAAAAGTTGTCAAATAA+TGG | + | chr8.4:41914864-41914883 | MS.gene63226:intron | 20.0% |
!! | TATCGAAATACAAAAAATAG+TGG | - | chr8.4:41913092-41913111 | None:intergenic | 20.0% |
!! | TTATGTTTATTCATTCACTA+TGG | + | chr8.4:41914991-41915010 | MS.gene63226:intron | 20.0% |
!! | TTGAAAGATGATATAGATTA+TGG | - | chr8.4:41914295-41914314 | None:intergenic | 20.0% |
!!! | AGAATTGAATGTTTTTAATG+TGG | + | chr8.4:41912556-41912575 | MS.gene63226:intron | 20.0% |
!!! | GTATTTTAATTCGAATCAAA+TGG | - | chr8.4:41912832-41912851 | None:intergenic | 20.0% |
!!! | GTTTGTAGTTTGTAATTTAT+GGG | + | chr8.4:41912703-41912722 | MS.gene63226:intron | 20.0% |
!!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr8.4:41912139-41912158 | None:intergenic | 20.0% |
!!! | TCATTTTATGTTTGTTGTAT+GGG | + | chr8.4:41913761-41913780 | MS.gene63226:intron | 20.0% |
!!! | TGACGTATGATTATTTATTT+TGG | + | chr8.4:41912482-41912501 | MS.gene63226:intron | 20.0% |
!!! | TGTTTGTAGTTTGTAATTTA+TGG | + | chr8.4:41912702-41912721 | MS.gene63226:intron | 20.0% |
!!! | TTCATTTTATGTTTGTTGTA+TGG | + | chr8.4:41913760-41913779 | MS.gene63226:intron | 20.0% |
!!! | TTTTGTAAATTTTGTAGTCA+GGG | + | chr8.4:41912584-41912603 | MS.gene63226:intron | 20.0% |
!!! | TTTTTGTAAATTTTGTAGTC+AGG | + | chr8.4:41912583-41912602 | MS.gene63226:intron | 20.0% |
! | AAAAATGCCATAATAAAGTC+AGG | - | chr8.4:41914394-41914413 | None:intergenic | 25.0% |
! | AATCCCATTACAAAACAATT+AGG | - | chr8.4:41913386-41913405 | None:intergenic | 25.0% |
! | AGCAGATATTGCATAAAAAT+AGG | - | chr8.4:41914322-41914341 | None:intergenic | 25.0% |
! | AGTGAATGAATAAACATAAC+AGG | - | chr8.4:41914990-41915009 | None:intergenic | 25.0% |
! | ATATGATTGGAATAGAAAAC+AGG | + | chr8.4:41912672-41912691 | MS.gene63226:CDS | 25.0% |
! | CAAAACCAGAAATATTAATC+AGG | - | chr8.4:41915097-41915116 | None:intergenic | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | - | chr8.4:41912114-41912133 | None:intergenic | 25.0% |
! | TGATTATGATGTTCTTTGTA+TGG | + | chr8.4:41913172-41913191 | MS.gene63226:intron | 25.0% |
! | TGTATTTATGATGACAACTT+GGG | - | chr8.4:41914250-41914269 | None:intergenic | 25.0% |
! | TTGTACTAAATCGTGTATAA+TGG | - | chr8.4:41911942-41911961 | None:intergenic | 25.0% |
! | TTGTATTTATGATGACAACT+TGG | - | chr8.4:41914251-41914270 | None:intergenic | 25.0% |
!! | AATTTGCTTATAATAGTGAC+CGG | + | chr8.4:41912149-41912168 | MS.gene63226:intron | 25.0% |
!! | AATTTGCTTATAATAGTGAC+CGG | - | chr8.4:41912168-41912149 | None:intergenic | 25.0% |
!! | ACTGCATAAAAAGACATTTT+CGG | - | chr8.4:41913860-41913879 | None:intergenic | 25.0% |
!! | GACAACTTTTAGTACTAAAT+AGG | - | chr8.4:41914858-41914877 | None:intergenic | 25.0% |
!! | TTTGTAAATTTTGTAGTCAG+GGG | + | chr8.4:41912585-41912604 | MS.gene63226:intron | 25.0% |
!!! | AAGCATGTTTTTAGAGAAAA+TGG | - | chr8.4:41911431-41911450 | None:intergenic | 25.0% |
!!! | ACTTCCTAATTGTTTTGTAA+TGG | + | chr8.4:41913379-41913398 | MS.gene63226:intron | 25.0% |
!!! | AGCATGTTTTTAGAGAAAAT+GGG | - | chr8.4:41911430-41911449 | None:intergenic | 25.0% |
!!! | CTTCCTAATTGTTTTGTAAT+GGG | + | chr8.4:41913380-41913399 | MS.gene63226:intron | 25.0% |
!!! | GGTTTTGATGTTATAAATCA+TGG | + | chr8.4:41913802-41913821 | MS.gene63226:intron | 25.0% |
!!! | TACAAAATGTTGTCATTTTG+CGG | + | chr8.4:41911873-41911892 | MS.gene63226:intron | 25.0% |
!!! | TACAAAGTATTGTCAATTTG+CGG | + | chr8.4:41912381-41912400 | MS.gene63226:intron | 25.0% |
!!! | TTTTTTCATGATCCTTTCAA+AGG | + | chr8.4:41913335-41913354 | MS.gene63226:CDS | 25.0% |
!!! | TTTTTTCCAGTGTTGTTAAA+TGG | + | chr8.4:41912925-41912944 | MS.gene63226:intron | 25.0% |
AAACAATGTCAAACTCTATC+AGG | - | chr8.4:41913143-41913162 | None:intergenic | 30.0% | |
AACAATGCTAATCCAAGATA+TGG | + | chr8.4:41915196-41915215 | MS.gene63226:CDS | 30.0% | |
AAGACACTAGGAATATGTAA+AGG | + | chr8.4:41911554-41911573 | MS.gene63226:intron | 30.0% | |
ACATTGCAATTAGAAATCAG+AGG | - | chr8.4:41914520-41914539 | None:intergenic | 30.0% | |
ACTATTAAGCGTGTTAATCT+TGG | + | chr8.4:41912880-41912899 | MS.gene63226:intron | 30.0% | |
AGACACTAGGAATATGTAAA+GGG | + | chr8.4:41911555-41911574 | MS.gene63226:intron | 30.0% | |
AGCACATATTTAATAAACCG+TGG | + | chr8.4:41911911-41911930 | MS.gene63226:intron | 30.0% | |
AGCACATATTTGATAAACCA+CGG | + | chr8.4:41911823-41911842 | MS.gene63226:intron | 30.0% | |
AGCAGTAAAAATCTAAGCAA+TGG | - | chr8.4:41913430-41913449 | None:intergenic | 30.0% | |
ATGTTATCTGTGGATGAAAT+GGG | + | chr8.4:41913275-41913294 | MS.gene63226:CDS | 30.0% | |
ATTAAATCCATCGCGTATAA+TGG | - | chr8.4:41911854-41911873 | None:intergenic | 30.0% | |
ATTGACTAAATCGCGTATAA+TGG | - | chr8.4:41912294-41912313 | None:intergenic | 30.0% | |
GGTTGTATTTGTTTGTGTAA+TGG | + | chr8.4:41911576-41911595 | MS.gene63226:intron | 30.0% | |
GTACTGAAATATATAGACAC+TGG | + | chr8.4:41914153-41914172 | MS.gene63226:intron | 30.0% | |
GTTGTTTGTGAAAAGTTTGA+GGG | - | chr8.4:41911248-41911267 | None:intergenic | 30.0% | |
TACAGCCTGATTAATATTTC+TGG | + | chr8.4:41915089-41915108 | MS.gene63226:intron | 30.0% | |
TATTTCGATATTGACAACAC+TGG | + | chr8.4:41913102-41913121 | MS.gene63226:intron | 30.0% | |
TATTTGTGTGTGTGTTTAGT+TGG | + | chr8.4:41911611-41911630 | MS.gene63226:intron | 30.0% | |
TCGGTAGTTTCAATTTGAAA+AGG | + | chr8.4:41913660-41913679 | MS.gene63226:intron | 30.0% | |
TCTGTATGAACTGACATATA+TGG | - | chr8.4:41913549-41913568 | None:intergenic | 30.0% | |
TGATTCAGTTCTGTACAAAA+AGG | + | chr8.4:41914131-41914150 | MS.gene63226:intron | 30.0% | |
TGGCATAAACAGTTTAATTG+TGG | - | chr8.4:41912812-41912831 | None:intergenic | 30.0% | |
TGTATCAAAAGCAGAGTTAT+CGG | + | chr8.4:41914465-41914484 | MS.gene63226:CDS | 30.0% | |
TTGGTCATTCCATTTACAAA+GGG | + | chr8.4:41911657-41911676 | MS.gene63226:CDS | 30.0% | |
TTGTACAGAACTGAATCAAT+CGG | - | chr8.4:41914129-41914148 | None:intergenic | 30.0% | |
! | TCGTAGTTGTTTAAAATGTG+AGG | + | chr8.4:41913220-41913239 | MS.gene63226:intron | 30.0% |
! | TGTTGTTTGTGAAAAGTTTG+AGG | - | chr8.4:41911249-41911268 | None:intergenic | 30.0% |
! | TTTTATTGAACGTCCATATG+TGG | + | chr8.4:41913691-41913710 | MS.gene63226:intron | 30.0% |
!! | ATAACTCTGCTTTTGATACA+GGG | - | chr8.4:41914465-41914484 | None:intergenic | 30.0% |
!! | CCTTATCTTTTTCTTTGAGA+GGG | + | chr8.4:41913460-41913479 | MS.gene63226:intron | 30.0% |
!! | CTTATCTTTTTCTTTGAGAG+GGG | + | chr8.4:41913461-41913480 | MS.gene63226:intron | 30.0% |
!! | TAGAGAAAATGGGTTAAAGA+GGG | - | chr8.4:41911420-41911439 | None:intergenic | 30.0% |
!! | TATTTTGGATTTGATTGTGC+TGG | + | chr8.4:41912497-41912516 | MS.gene63226:intron | 30.0% |
!! | TTAGAGAAAATGGGTTAAAG+AGG | - | chr8.4:41911421-41911440 | None:intergenic | 30.0% |
!! | TTTTCTGAAAACTTACGTCA+TGG | + | chr8.4:41912779-41912798 | MS.gene63226:intron | 30.0% |
!!! | TTTTATGTTTGTTGTATGGG+TGG | + | chr8.4:41913764-41913783 | MS.gene63226:intron | 30.0% |
AAAAAGACATGTACCTAGTG+TGG | - | chr8.4:41914703-41914722 | None:intergenic | 35.0% | |
AACACATAGTTAGCCACATA+TGG | - | chr8.4:41913707-41913726 | None:intergenic | 35.0% | |
AAGTTCGTATATGATCTGAC+AGG | + | chr8.4:41912750-41912769 | MS.gene63226:intron | 35.0% | |
AATGCTAATCCAAGATATGG+TGG | + | chr8.4:41915199-41915218 | MS.gene63226:CDS | 35.0% | |
ACAACATTGAATAGCTCAAC+AGG | + | chr8.4:41914949-41914968 | MS.gene63226:intron | 35.0% | |
ACGCTTATACTTACATCCAA+AGG | - | chr8.4:41911725-41911744 | None:intergenic | 35.0% | |
ACTGTTCAATCAAGATCACA+CGG | + | chr8.4:41913623-41913642 | MS.gene63226:intron | 35.0% | |
ATGTCAGTTCATACAGATCT+GGG | + | chr8.4:41913552-41913571 | MS.gene63226:intron | 35.0% | |
CAATGGAATTTCCTTGACAA+TGG | - | chr8.4:41914675-41914694 | None:intergenic | 35.0% | |
CATGTTATCTGTGGATGAAA+TGG | + | chr8.4:41913274-41913293 | MS.gene63226:CDS | 35.0% | |
CCCTCTCAAAGAAAAAGATA+AGG | - | chr8.4:41913463-41913482 | None:intergenic | 35.0% | |
CTATTCAATGTTGTCGATCA+CGG | - | chr8.4:41914943-41914962 | None:intergenic | 35.0% | |
CTATTCCAATCATATTGACG+CGG | - | chr8.4:41912667-41912686 | None:intergenic | 35.0% | |
CTGAAGAAAGAACATTACTG+AGG | - | chr8.4:41913951-41913970 | None:intergenic | 35.0% | |
GTGAAGGGTTTGAATTTGAA+AGG | - | chr8.4:41911298-41911317 | None:intergenic | 35.0% | |
GTGATGCTCTTATAGTTCAA+TGG | + | chr8.4:41914555-41914574 | MS.gene63226:intron | 35.0% | |
GTTGGTCATTCCATTTACAA+AGG | + | chr8.4:41911656-41911675 | MS.gene63226:CDS | 35.0% | |
TACGCGATTTAGTCAATTTG+CGG | + | chr8.4:41912297-41912316 | MS.gene63226:intron | 35.0% | |
TAGTAGCTTAACCATTGTCA+AGG | + | chr8.4:41914661-41914680 | MS.gene63226:intron | 35.0% | |
TATATCATGCCATACCTTCT+AGG | + | chr8.4:41915124-41915143 | MS.gene63226:CDS | 35.0% | |
TATGTCAGTTCATACAGATC+TGG | + | chr8.4:41913551-41913570 | MS.gene63226:intron | 35.0% | |
TCATTCCATTTACAAAGGGA+AGG | + | chr8.4:41911661-41911680 | MS.gene63226:CDS | 35.0% | |
TGCAATTAGAAATCAGAGGT+AGG | - | chr8.4:41914516-41914535 | None:intergenic | 35.0% | |
TGTTCAAAATTCACTACGCA+AGG | - | chr8.4:41913067-41913086 | None:intergenic | 35.0% | |
TTGATTGAACAGTCCAAATG+TGG | - | chr8.4:41913616-41913635 | None:intergenic | 35.0% | |
TTGTAATTTATGGGTGACGA+TGG | + | chr8.4:41912712-41912731 | MS.gene63226:intron | 35.0% | |
TTGTACCAAATCGCGTATAA+TGG | - | chr8.4:41912366-41912385 | None:intergenic | 35.0% | |
TTGTTCCATTATACGCGATT+TGG | + | chr8.4:41912286-41912305 | MS.gene63226:intron | 35.0% | |
TTTAGTCAATTTGCGGATAG+TGG | + | chr8.4:41912304-41912323 | MS.gene63226:intron | 35.0% | |
TTTCATGATCCTTTCAAAGG+CGG | + | chr8.4:41913338-41913357 | MS.gene63226:CDS | 35.0% | |
! | AATTGTTGGTGAAAGACACT+AGG | + | chr8.4:41911542-41911561 | MS.gene63226:intron | 35.0% |
! | GCCTTATCTTTTTCTTTGAG+AGG | + | chr8.4:41913459-41913478 | MS.gene63226:intron | 35.0% |
! | GTCTTTTTATGCAGTGATGA+AGG | + | chr8.4:41913865-41913884 | MS.gene63226:intron | 35.0% |
! | TGTTCTTTGTATGGTTCTGT+TGG | + | chr8.4:41913181-41913200 | MS.gene63226:intron | 35.0% |
! | TTTCCAGTGTTGTTAAATGG+CGG | + | chr8.4:41912928-41912947 | MS.gene63226:intron | 35.0% |
! | TTTGAAGATTGAGCCTTTTC+CGG | + | chr8.4:41913903-41913922 | MS.gene63226:CDS | 35.0% |
!! | ACTATAAGAGCATCACATCA+TGG | - | chr8.4:41914551-41914570 | None:intergenic | 35.0% |
!! | CAAACTCTATCAGGTTTTGT+TGG | - | chr8.4:41913134-41913153 | None:intergenic | 35.0% |
!! | GATAACTCTGCTTTTGATAC+AGG | - | chr8.4:41914466-41914485 | None:intergenic | 35.0% |
!! | GTTTGTGTAATGGACTAACT+TGG | + | chr8.4:41911586-41911605 | MS.gene63226:intron | 35.0% |
!! | TCCTTTCCATATTCAAGTTG+CGG | + | chr8.4:41914012-41914031 | MS.gene63226:intron | 35.0% |
AAGAAGAAACCAGAACCATC+CGG | - | chr8.4:41913925-41913944 | None:intergenic | 40.0% | |
AAGTACCTGAAGGATTGTTG+GGG | - | chr8.4:41911390-41911409 | None:intergenic | 40.0% | |
ATAGTGCCGCAACTTGAATA+TGG | - | chr8.4:41914021-41914040 | None:intergenic | 40.0% | |
ATATAGCGATCATAGCGTAG+CGG | + | chr8.4:41914800-41914819 | MS.gene63226:intron | 40.0% | |
ATCTTAGCAAATACTCCCTC+CGG | - | chr8.4:41912171-41912190 | None:intergenic | 40.0% | |
CTCGAGTCCTGACTTTATTA+TGG | + | chr8.4:41914384-41914403 | MS.gene63226:intron | 40.0% | |
CTGCATTCAAGTAAACCAGA+TGG | - | chr8.4:41913249-41913268 | None:intergenic | 40.0% | |
GAATGACCAACATAAACCCT+AGG | - | chr8.4:41911647-41911666 | None:intergenic | 40.0% | |
GATTGTTCCATTATACGCGA+TGG | + | chr8.4:41911844-41911863 | MS.gene63226:intron | 40.0% | |
GCATACAAGATATCTAGGGA+TGG | + | chr8.4:41912607-41912626 | MS.gene63226:CDS | 40.0% | |
TAAAATGTGAGGTCACCATC+TGG | + | chr8.4:41913231-41913250 | MS.gene63226:intron | 40.0% | |
TAATAAAGTCAGGACTCGAG+AGG | - | chr8.4:41914384-41914403 | None:intergenic | 40.0% | |
TGATGAAGGCAAAGTCAGAA+AGG | + | chr8.4:41913879-41913898 | MS.gene63226:CDS | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr8.4:41912153-41912172 | MS.gene63226:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | - | chr8.4:41912172-41912153 | None:intergenic | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr8.4:41912152-41912171 | MS.gene63226:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | - | chr8.4:41912171-41912152 | None:intergenic | 40.0% | |
TTGTCAAACTGCAGCTATAG+TGG | + | chr8.4:41912234-41912253 | MS.gene63226:intron | 40.0% | |
TTGTCAATTTGCGGCTATAG+TGG | + | chr8.4:41912390-41912409 | MS.gene63226:intron | 40.0% | |
! | AGGGGCATACAAGATATCTA+GGG | + | chr8.4:41912603-41912622 | MS.gene63226:CDS | 40.0% |
! | CGCGTATAATGGAACAATCA+TGG | - | chr8.4:41911843-41911862 | None:intergenic | 40.0% |
! | GAAGATGTTGATGAGAGTGA+TGG | - | chr8.4:41911208-41911227 | None:intergenic | 40.0% |
! | GAAGTACCTGAAGGATTGTT+GGG | - | chr8.4:41911391-41911410 | None:intergenic | 40.0% |
! | GGTTCTACGCTCAATTTTCA+AGG | + | chr8.4:41914486-41914505 | MS.gene63226:CDS | 40.0% |
! | TCACGGATTGCGAAAAATAG+TGG | - | chr8.4:41914926-41914945 | None:intergenic | 40.0% |
!! | AGAAGTACCTGAAGGATTGT+TGG | - | chr8.4:41911392-41911411 | None:intergenic | 40.0% |
!! | GGGAAAAAAGAAGTACCTGA+AGG | - | chr8.4:41911400-41911419 | None:intergenic | 40.0% |
!! | TACAAAGTGCTGTCGATTTG+CGG | + | chr8.4:41911957-41911976 | MS.gene63226:intron | 40.0% |
!! | TTTTTCTTTGAGAGGGGACA+TGG | + | chr8.4:41913467-41913486 | MS.gene63226:intron | 40.0% |
!!! | CACGGTCTAGATTTTTAGCT+CGG | + | chr8.4:41913641-41913660 | MS.gene63226:intron | 40.0% |
!!! | TTGTCATTTTGCGGCTATAG+TGG | + | chr8.4:41911882-41911901 | MS.gene63226:intron | 40.0% |
AAACCAGAACCATCCGGAAA+AGG | - | chr8.4:41913919-41913938 | None:intergenic | 45.0% | |
AACTACCTTCCGCCTTTGAA+AGG | - | chr8.4:41913350-41913369 | None:intergenic | 45.0% | |
AGCAGCCTTCCCTTTGTAAA+TGG | - | chr8.4:41911669-41911688 | None:intergenic | 45.0% | |
AGTACCTGAAGGATTGTTGG+GGG | - | chr8.4:41911389-41911408 | None:intergenic | 45.0% | |
ATGATCCTTTCAAAGGCGGA+AGG | + | chr8.4:41913342-41913361 | MS.gene63226:CDS | 45.0% | |
GAACAAACTAGTACTCCCTC+CGG | + | chr8.4:41912018-41912037 | MS.gene63226:intron | 45.0% | |
GCAGCTGTTCATGTTATCTG+TGG | + | chr8.4:41913265-41913284 | MS.gene63226:intron | 45.0% | |
GCCGCAACTTGAATATGGAA+AGG | - | chr8.4:41914016-41914035 | None:intergenic | 45.0% | |
GCTGACTGCATGTAATCATG+GGG | - | chr8.4:41913594-41913613 | None:intergenic | 45.0% | |
GGCTGACTGCATGTAATCAT+GGG | - | chr8.4:41913595-41913614 | None:intergenic | 45.0% | |
TACATGCAGTCAGCCACATT+TGG | + | chr8.4:41913600-41913619 | MS.gene63226:intron | 45.0% | |
TACCTAGTGTGGTCAGACAA+TGG | - | chr8.4:41914692-41914711 | None:intergenic | 45.0% | |
TATAGCGATCATAGCGTAGC+GGG | + | chr8.4:41914801-41914820 | MS.gene63226:intron | 45.0% | |
TCAAGACAAAACTGCGAACG+TGG | + | chr8.4:41914423-41914442 | MS.gene63226:CDS | 45.0% | |
TCATGCCATACCTTCTAGGT+TGG | + | chr8.4:41915128-41915147 | MS.gene63226:CDS | 45.0% | |
TCGTAGTCTCCACCATATCT+TGG | - | chr8.4:41915211-41915230 | None:intergenic | 45.0% | |
TGACCAACATAAACCCTAGG+TGG | - | chr8.4:41911644-41911663 | None:intergenic | 45.0% | |
TGGCTGACTGCATGTAATCA+TGG | - | chr8.4:41913596-41913615 | None:intergenic | 45.0% | |
TTCCATTGTCTGACCACACT+AGG | + | chr8.4:41914687-41914706 | MS.gene63226:intron | 45.0% | |
TTCTGTTGGAGCTACAAGGT+TGG | + | chr8.4:41913195-41913214 | MS.gene63226:intron | 45.0% | |
TTGCCACCTAGGGTTTATGT+TGG | + | chr8.4:41911638-41911657 | MS.gene63226:CDS | 45.0% | |
TTGGTCCGCGTCAATATGAT+TGG | + | chr8.4:41912659-41912678 | MS.gene63226:CDS | 45.0% | |
! | AAGATTGAGCCTTTTCCGGA+TGG | + | chr8.4:41913907-41913926 | MS.gene63226:CDS | 45.0% |
! | ATGGTTCTGTTGGAGCTACA+AGG | + | chr8.4:41913191-41913210 | MS.gene63226:intron | 45.0% |
! | CAGGGGCATACAAGATATCT+AGG | + | chr8.4:41912602-41912621 | MS.gene63226:CDS | 45.0% |
! | CGTGTATAATGGAACGACCA+CGG | - | chr8.4:41911931-41911950 | None:intergenic | 45.0% |
! | GATATGGTGGAGACTACGAA+TGG | + | chr8.4:41915212-41915231 | MS.gene63226:CDS | 45.0% |
! | GATGTTGATGAGAGTGATGG+TGG | - | chr8.4:41911205-41911224 | None:intergenic | 45.0% |
!! | ATGGGAAGTGTGATTAGCCT+TGG | + | chr8.4:41913293-41913312 | MS.gene63226:CDS | 45.0% |
!! | TGTGATTAGCCTTGGTGCAA+GGG | + | chr8.4:41913301-41913320 | MS.gene63226:CDS | 45.0% |
AGTTGGAGCTTTGCCACCTA+GGG | + | chr8.4:41911628-41911647 | MS.gene63226:intron | 50.0% | |
ATATTGACGCGGACCAACAG+AGG | - | chr8.4:41912656-41912675 | None:intergenic | 50.0% | |
ATTAGCATTGTTCGCCGCTG+CGG | - | chr8.4:41915188-41915207 | None:intergenic | 50.0% | |
CACTATCACTCCTAGACCAC+CGG | + | chr8.4:41911691-41911710 | MS.gene63226:CDS | 50.0% | |
GCAAGGCAGCAATGCTATAG+CGG | - | chr8.4:41913050-41913069 | None:intergenic | 50.0% | |
GTACCTGAAGGATTGTTGGG+GGG | - | chr8.4:41911388-41911407 | None:intergenic | 50.0% | |
GTGTGCCAACCTAGAAGGTA+TGG | - | chr8.4:41915136-41915155 | None:intergenic | 50.0% | |
TAGTTGGAGCTTTGCCACCT+AGG | + | chr8.4:41911627-41911646 | MS.gene63226:intron | 50.0% | |
TATTGACGCGGACCAACAGA+GGG | - | chr8.4:41912655-41912674 | None:intergenic | 50.0% | |
! | AAATCCGGAGTATTCCGCAG+CGG | + | chr8.4:41915171-41915190 | MS.gene63226:CDS | 50.0% |
! | ACATCCAAAGGCGCGAATTC+CGG | - | chr8.4:41911713-41911732 | None:intergenic | 50.0% |
! | CAAAGGTGTGCCAACCTAGA+AGG | - | chr8.4:41915141-41915160 | None:intergenic | 50.0% |
! | CGCGTATAATGGAACAACCG+TGG | - | chr8.4:41912355-41912374 | None:intergenic | 50.0% |
!! | CTGTCGATTTGCGGCTATAG+TGG | + | chr8.4:41911966-41911985 | MS.gene63226:intron | 50.0% |
!! | GTGTGATTAGCCTTGGTGCA+AGG | + | chr8.4:41913300-41913319 | MS.gene63226:CDS | 50.0% |
AAGGGTTGAAGACGTCGGAG+TGG | - | chr8.4:41911333-41911352 | None:intergenic | 55.0% | |
ACACCCCCCAACAATCCTTC+AGG | + | chr8.4:41911382-41911401 | MS.gene63226:CDS | 55.0% | |
AGGGGAAGGGTTGAAGACGT+CGG | - | chr8.4:41911338-41911357 | None:intergenic | 55.0% | |
CACAAGACTCCCTTGCACCA+AGG | - | chr8.4:41913313-41913332 | None:intergenic | 55.0% | |
CTTCAGTTTGCGCCCTCTGT+TGG | + | chr8.4:41912640-41912659 | MS.gene63226:CDS | 55.0% | |
GCGCCGCCATTTAACAACAC+TGG | - | chr8.4:41912934-41912953 | None:intergenic | 55.0% | |
! | AGGATTGTTGGGGGGTGTAG+TGG | - | chr8.4:41911380-41911399 | None:intergenic | 55.0% |
! | GAGCCTTTTCCGGATGGTTC+TGG | + | chr8.4:41913913-41913932 | MS.gene63226:CDS | 55.0% |
! | GGATTGTTGGGGGGTGTAGT+GGG | - | chr8.4:41911379-41911398 | None:intergenic | 55.0% |
! | TGGCGGCATCGGATAGTGAA+GGG | - | chr8.4:41911313-41911332 | None:intergenic | 55.0% |
ACCACCGGAATTCGCGCCTT+TGG | + | chr8.4:41911706-41911725 | MS.gene63226:CDS | 60.0% | |
GGGTGGCTACATGCGAGAAC+AGG | + | chr8.4:41913781-41913800 | MS.gene63226:intron | 60.0% | |
GGTTGAAGACGTCGGAGTGG+CGG | - | chr8.4:41911330-41911349 | None:intergenic | 60.0% | |
TTCGCCGCTGCGGAATACTC+CGG | - | chr8.4:41915178-41915197 | None:intergenic | 60.0% | |
! | GTGGCGGCATCGGATAGTGA+AGG | - | chr8.4:41911314-41911333 | None:intergenic | 60.0% |
! | TCCAAAGGCGCGAATTCCGG+TGG | - | chr8.4:41911710-41911729 | None:intergenic | 60.0% |
! | TTGTTGGGGGGTGTAGTGGG+AGG | - | chr8.4:41911376-41911395 | None:intergenic | 60.0% |
AGACGTCGGAGTGGCGGCAT+CGG | - | chr8.4:41911324-41911343 | None:intergenic | 65.0% | |
AGGAGGAGGGGGGTTTGGAG+GGG | - | chr8.4:41911356-41911375 | None:intergenic | 65.0% | |
GAGGAGGAGGGGGGTTTGGA+GGG | - | chr8.4:41911357-41911376 | None:intergenic | 65.0% | |
GAGGGGGGTTTGGAGGGGAA+GGG | - | chr8.4:41911351-41911370 | None:intergenic | 65.0% | |
GGCGCGAATTCCGGTGGTCT+AGG | - | chr8.4:41911704-41911723 | None:intergenic | 65.0% | |
! | GGGGTGTAGTGGGAGGAGGA+GGG | - | chr8.4:41911369-41911388 | None:intergenic | 65.0% |
! | GGGTGTAGTGGGAGGAGGAG+GGG | - | chr8.4:41911368-41911387 | None:intergenic | 65.0% |
! | GGTGTAGTGGGAGGAGGAGG+GGG | - | chr8.4:41911367-41911386 | None:intergenic | 65.0% |
! | GTGTAGTGGGAGGAGGAGGG+GGG | - | chr8.4:41911366-41911385 | None:intergenic | 65.0% |
! | TTGGGGGGTGTAGTGGGAGG+AGG | - | chr8.4:41911373-41911392 | None:intergenic | 65.0% |
GGAGGAGGAGGGGGGTTTGG+AGG | - | chr8.4:41911358-41911377 | None:intergenic | 70.0% | |
GGAGGGGGGTTTGGAGGGGA+AGG | - | chr8.4:41911352-41911371 | None:intergenic | 70.0% | |
GTGGGAGGAGGAGGGGGGTT+TGG | - | chr8.4:41911361-41911380 | None:intergenic | 70.0% | |
! | GGGGGTGTAGTGGGAGGAGG+AGG | - | chr8.4:41911370-41911389 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 41911169 | 41915243 | 41911169 | ID=MS.gene63226 |
chr8.4 | mRNA | 41911169 | 41915243 | 41911169 | ID=MS.gene63226.t1;Parent=MS.gene63226 |
chr8.4 | exon | 41911169 | 41911403 | 41911169 | ID=MS.gene63226.t1.exon1;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41911169 | 41911403 | 41911169 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41911630 | 41911730 | 41911630 | ID=MS.gene63226.t1.exon2;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41911630 | 41911730 | 41911630 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41912601 | 41912693 | 41912601 | ID=MS.gene63226.t1.exon3;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41912601 | 41912693 | 41912601 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41913269 | 41913363 | 41913269 | ID=MS.gene63226.t1.exon4;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41913269 | 41913363 | 41913269 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41913879 | 41913952 | 41913879 | ID=MS.gene63226.t1.exon5;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41913879 | 41913952 | 41913879 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41914419 | 41914507 | 41914419 | ID=MS.gene63226.t1.exon6;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41914419 | 41914507 | 41914419 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
chr8.4 | exon | 41915124 | 41915243 | 41915124 | ID=MS.gene63226.t1.exon7;Parent=MS.gene63226.t1 |
chr8.4 | CDS | 41915124 | 41915243 | 41915124 | ID=cds.MS.gene63226.t1;Parent=MS.gene63226.t1 |
Gene Sequence |
Protein sequence |