AlfalfaGEDB | MS.gene63322

M. sativa cultivar XinJiangDaYe / MS.gene63322

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63322.t1	KEH34714.1	88	108	13	0	21	128	2	109	1.50E-45	192.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63322.t1	Q9FKK2	57.0	121	50	1	6	124	4	124	5.7e-30	131.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63322.t1	A0A072UY28	88.0	108	13	0	21	128	2	109	1.1e-45	192.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene63322.t1	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63322.t1	MTR_3g067910	87.963	108	13	21	128	2	109	4.31e-67	198
MS.gene63322.t1	MTR_5g045560	79.508	122	25	1	122	1	122	1.46e-63	194
MS.gene63322.t1	MTR_2g085280	71.875	128	36	1	128	1	128	7.28e-62	189
MS.gene63322.t1	MTR_2g085250	71.875	128	36	1	128	1	128	8.39e-62	189
MS.gene63322.t1	MTR_3g052870	73.171	123	33	1	123	1	123	1.02e-60	186
MS.gene63322.t1	MTR_1g105920	73.171	123	33	1	123	1	123	1.76e-60	186
MS.gene63322.t1	MTR_1g077360	72.131	122	34	1	122	1	122	1.28e-59	184
MS.gene63322.t1	MTR_8g043650	71.545	123	35	1	123	1	123	1.78e-59	183
MS.gene63322.t1	MTR_1g075600	73.171	123	33	1	123	1	123	8.46e-59	181
MS.gene63322.t1	MTR_5g055100	72.358	123	34	1	123	1	123	4.49e-58	179

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63322.t1	AT5G60440	57.025	121	50	1	6	124	4	124	2.07e-40	136
MS.gene63322.t1	AT4G36590	54.630	108	44	1	7	109	5	112	3.87e-30	108
MS.gene63322.t1	AT2G24840	46.610	118	57	2	9	124	63	176	5.57e-27	101
MS.gene63322.t1	AT1G65360	48.214	112	56	1	6	117	4	113	5.96e-27	100
MS.gene63322.t1	AT1G01530	50.000	104	50	1	6	109	4	105	1.64e-26	99.4
MS.gene63322.t1	AT2G34440	39.640	111	66	1	9	119	2	111	2.28e-22	87.0
MS.gene63322.t1	AT3G04100	35.043	117	71	2	6	117	11	127	6.41e-20	81.3
MS.gene63322.t1	AT3G66656	51.471	68	33	0	9	76	2	69	1.55e-18	77.0
MS.gene63322.t1	AT1G72350	50.685	73	34	1	9	81	43	113	2.12e-18	77.8
MS.gene63322.t1	AT2G45650	52.941	68	32	0	9	76	2	69	6.20e-17	74.3

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Find 17 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAAACACCTTCTCACC+AGG	0.598148	3.3:+60043418	None:intergenic
AATGAGCCTCATTTCGCAGA+TGG	0.559491	3.3:+60043214	None:intergenic
AGCAACATATGCACCACAAA+GGG	0.521852	3.3:+60043456	None:intergenic
AGCGAGCTTTGCACCCTTTG+TGG	0.386397	3.3:-60043469	MS.gene63322:CDS
ATGGCTCAAACTCATTACAA+CGG	0.727817	3.3:+60043233	None:intergenic
ATTGCAAGATGCCATTGTTT+TGG	0.345850	3.3:+60043341	None:intergenic
CAGGTCCCACCCCAAAACAA+TGG	0.630259	3.3:-60043352	MS.gene63322:CDS
CATAAATCGTTATATCTCTC+AGG	0.481105	3.3:-60043371	MS.gene63322:CDS
GAGCAACATATGCACCACAA+AGG	0.640810	3.3:+60043455	None:intergenic
GCATCGTTCATATGAGTCAA+TGG	0.541468	3.3:+60043274	None:intergenic

Showing 1 to 10 of 17 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATAAATCGTTATATCTCTC+AGG	-	chr3.3:60043437-60043456	MS.gene63322:CDS	30.0%
ATGGCTCAAACTCATTACAA+CGG	+	chr3.3:60043578-60043597	None:intergenic	35.0%
AATGAAAACACCTTCTCACC+AGG	+	chr3.3:60043393-60043412	None:intergenic	40.0%
AGCAACATATGCACCACAAA+GGG	+	chr3.3:60043355-60043374	None:intergenic	40.0%
GCATCGTTCATATGAGTCAA+TGG	+	chr3.3:60043537-60043556	None:intergenic	40.0%
GCTCTGATTATATTCTCACC+TGG	-	chr3.3:60043372-60043391	MS.gene63322:CDS	40.0%
TATATTCTCACCTGGTGAGA+AGG	-	chr3.3:60043380-60043399	MS.gene63322:CDS	40.0%
TGACCGTTTCTACATTTGTG+TGG	+	chr3.3:60043419-60043438	None:intergenic	40.0%
TGGCCACACAAATGTAGAAA+CGG	-	chr3.3:60043413-60043432	MS.gene63322:CDS	40.0%
GAGCAACATATGCACCACAA+AGG	+	chr3.3:60043356-60043375	None:intergenic	45.0%

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	60043222	60043608	60043222	ID=MS.gene63322
chr3.3	mRNA	60043222	60043608	60043222	ID=MS.gene63322.t1;Parent=MS.gene63322
chr3.3	exon	60043222	60043608	60043222	ID=MS.gene63322.t1.exon1;Parent=MS.gene63322.t1
chr3.3	CDS	60043222	60043608	60043222	ID=cds.MS.gene63322.t1;Parent=MS.gene63322.t1

Gene Sequence

>MS.gene63322

ATGTCGAGTCGAATGAAAACTCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGAAATGAAAGCAACCTGCAAGTGACTTTTTCGAAGCTCCATAGTGGGCTCTTCAAAATAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTGATTATATTCTCACCTGGTGAGAAGGTGTTTTCATTTGGCCACACAAATGTAGAAACGGTCATAAATCGTTATATCTCTCAGGTCCCACCCCAAAACAATGGCATCTTGCAATTCATCGAGGCATACCGTAACGCAAAAGTGAGCAAGCTCATTGCTCCATTGACTCATATGAACGATGCACTAGACATCGAGAAGAACCGTTGTAATGAGTTTGAGCCATCTGCGAAATGA

Protein sequence

>MS.gene63322.t1

MSSRMKTRGRQKIEMKKMRNESNLQVTFSKLHSGLFKIASELCTLCGAYVALIIFSPGEKVFSFGHTNVETVINRYISQVPPQNNGILQFIEAYRNAKVSKLIAPLTHMNDALDIEKNRCNEFEPSAK