AlfalfaGEDB | MS.gene63381

M. sativa cultivar XinJiangDaYe / MS.gene63381

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63381.t1	XP_024632959.1	68.4	234	68	3	1	233	1	229	9.60E-75	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63381.t1	A0A396JGH2	68.4	234	68	3	1	233	1	229	6.9e-75	290.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene63381.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63381.t1	MTR_6g081160	65.000	60	17	1	20	75	1	60	4.74e-17	78.2
MS.gene63381.t1	MTR_6g081160	57.812	64	22	2	114	172	1	64	2.15e-14	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 40 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATACTATGGCTAGTT+TGG	0.292025	2.4:-21828905	MS.gene63381:CDS
AACTACCTTGTATTGAGAGA+GGG	0.509993	2.4:+21829205	None:intergenic
AAGCGATGAAGATGATGCTA+AGG	0.582770	2.4:-21828803	MS.gene63381:CDS
AAGTGATGAAGATGATGCTA+AGG	0.616457	2.4:-21829085	MS.gene63381:CDS
AATACAAGGAAATAATACTA+TGG	0.401260	2.4:-21828914	MS.gene63381:CDS
AATACAAGGTAGTTATAATA+GGG	0.431054	2.4:-21829196	MS.gene63381:CDS
AATTAATCATCGTTCACAAA+AGG	0.518691	2.4:-21829235	MS.gene63381:CDS
ACACATCAATGCAATGTTTG+TGG	0.441710	2.4:-21829039	MS.gene63381:CDS
ACACATCAGTGCAATGTTTG+TGG	0.475496	2.4:-21829321	MS.gene63381:CDS
ACTACCTTGTATTGAGAGAG+GGG	0.593179	2.4:+21829206	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCATCATGATTCACAAA+AGG	-	chr2.4:21829262-21829281	MS.gene63381:CDS	30.0%
ATGGATAAAGATCATAAGCA+TGG	-	chr2.4:21828765-21828784	MS.gene63381:CDS	30.0%
ATTTCCTTGTATTGAGAAAG+GGG	+	chr2.4:21829294-21829313	None:intergenic	30.0%
AACTACCTTGTATTGAGAGA+GGG	+	chr2.4:21829013-21829032	None:intergenic	35.0%
AAGTGATGAAGATGATGCTA+AGG	-	chr2.4:21829130-21829149	MS.gene63381:CDS	35.0%
ACACATCAATGCAATGTTTG+TGG	-	chr2.4:21829176-21829195	MS.gene63381:CDS	35.0%
AGTCTGAAAAGAGGATAAAG+AGG	-	chr2.4:21829090-21829109	MS.gene63381:CDS	35.0%
CATGATGAAGTTTCTGCTTA+AGG	+	chr2.4:21829253-21829272	None:intergenic	35.0%
CTATGAAGAGTCAGAAAAGA+GGG	-	chr2.4:21829364-21829383	MS.gene63381:CDS	35.0%
TAACTACCTTGTATTGAGAG+AGG	+	chr2.4:21829014-21829033	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	21828765	21829472	21828765	ID=MS.gene63381
chr2.4	mRNA	21828765	21829472	21828765	ID=MS.gene63381.t1;Parent=MS.gene63381
chr2.4	exon	21828765	21829472	21828765	ID=MS.gene63381.t1.exon1;Parent=MS.gene63381.t1
chr2.4	CDS	21828765	21829472	21828765	ID=cds.MS.gene63381.t1;Parent=MS.gene63381.t1

Gene Sequence

>MS.gene63381

ATGGATAAAGATCATAAGCATGGTTATGAGAAAACCTATGAAGATTCTGAAAAGACGATGAAAAGGTCTTCATGTTCACTATCTAGTGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTACACATCAGTGCAATGTTTGTGGGAAAATTTTTAGCAATGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAAATTAATCATCGTTCACAAAAGGTACAAACCCCTCTCTCAATACAAGGTAGTTATAATAGGGCTAGTTTTGATAAAGATAGTAAGCATGGTTTTGAGAACACCCGTGAAGAGTCTGAAAAGAGGATAAAGAGGTCTTTTAGTTCTCTATCAAGTGATGAAGATGATGCTAAGGATGAGCTTTCTATTCAAGAAACTACACATCAATGCAATGTTTGTGGAAAAACTTTTAGCAAAATAAAAGCATTGGGTGGTCACCGAAGATCTCACTTCCTTAAGCAGAAACTTCATCATGATTCACAAAAGGTTGATACCCCTTTCTCAATACAAGGAAATAATACTATGGCTAGTTTGGATAAAGATCATAAGCATGATCACGAGGATACCTATGAAGAGTCAGAAAAGAGGGTGAAAAGGTCAGCTTGTTCTCTATCAAGCGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTACACATCAGTGCTAG

Protein sequence

>MS.gene63381.t1

MDKDHKHGYEKTYEDSEKTMKRSSCSLSSDEDDAKDEVSVQESTHQCNVCGKIFSNGKALGGHRRSHFLKKKINHRSQKVQTPLSIQGSYNRASFDKDSKHGFENTREESEKRIKRSFSSLSSDEDDAKDELSIQETTHQCNVCGKTFSKIKALGGHRRSHFLKQKLHHDSQKVDTPFSIQGNNTMASLDKDHKHDHEDTYEESEKRVKRSACSLSSDEDDAKDEVSVQESTHQC