Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63385.t1 | XP_024632081.1 | 82.2 | 174 | 27 | 1 | 3 | 172 | 117 | 290 | 2.20E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63385.t1 | Q8GWF1 | 58.3 | 72 | 29 | 1 | 8 | 78 | 100 | 171 | 1.8e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63385.t1 | G7IR23 | 82.2 | 174 | 27 | 1 | 3 | 172 | 15 | 188 | 1.6e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63385.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63385.t1 | MTR_2g075610 | 82.184 | 174 | 27 | 1 | 3 | 172 | 15 | 188 | 1.56e-101 | 291 |
| MS.gene63385.t1 | MTR_2g075750 | 81.609 | 174 | 23 | 2 | 3 | 172 | 14 | 182 | 5.63e-100 | 286 |
| MS.gene63385.t1 | MTR_2g075700 | 54.335 | 173 | 68 | 5 | 7 | 171 | 134 | 303 | 8.03e-56 | 179 |
| MS.gene63385.t1 | MTR_2g075690 | 48.315 | 178 | 75 | 5 | 3 | 167 | 127 | 300 | 2.21e-44 | 149 |
| MS.gene63385.t1 | MTR_2g075680 | 49.701 | 167 | 70 | 5 | 3 | 158 | 134 | 297 | 2.50e-44 | 149 |
| MS.gene63385.t1 | MTR_7g073430 | 52.846 | 123 | 55 | 3 | 7 | 127 | 112 | 233 | 2.51e-35 | 125 |
| MS.gene63385.t1 | MTR_7g073380 | 56.122 | 98 | 42 | 1 | 7 | 104 | 113 | 209 | 1.78e-34 | 123 |
| MS.gene63385.t1 | MTR_8g032510 | 47.183 | 142 | 69 | 5 | 7 | 145 | 108 | 246 | 2.04e-34 | 123 |
| MS.gene63385.t1 | MTR_0002s1250 | 45.217 | 115 | 60 | 3 | 7 | 119 | 101 | 214 | 2.83e-29 | 109 |
| MS.gene63385.t1 | MTR_8g005750 | 50.000 | 104 | 47 | 2 | 7 | 109 | 93 | 192 | 2.72e-28 | 107 |
| MS.gene63385.t1 | MTR_3g093830 | 50.000 | 68 | 34 | 0 | 13 | 80 | 123 | 190 | 4.39e-19 | 83.2 |
| MS.gene63385.t1 | MTR_8g099350 | 53.333 | 60 | 28 | 0 | 17 | 76 | 132 | 191 | 3.31e-18 | 81.3 |
| MS.gene63385.t1 | MTR_5g067700 | 39.286 | 112 | 58 | 3 | 3 | 110 | 93 | 198 | 4.88e-18 | 79.0 |
| MS.gene63385.t1 | MTR_7g117200 | 49.180 | 61 | 31 | 0 | 16 | 76 | 117 | 177 | 1.65e-16 | 76.3 |
| MS.gene63385.t1 | MTR_3g090860 | 37.500 | 96 | 60 | 0 | 16 | 111 | 132 | 227 | 1.87e-16 | 76.3 |
| MS.gene63385.t1 | MTR_5g067680 | 50.000 | 64 | 32 | 0 | 17 | 80 | 202 | 265 | 9.39e-16 | 74.3 |
| MS.gene63385.t1 | MTR_8g027860 | 46.875 | 64 | 34 | 0 | 16 | 79 | 135 | 198 | 3.88e-15 | 72.4 |
| MS.gene63385.t1 | MTR_4g094588 | 45.455 | 77 | 37 | 2 | 16 | 90 | 177 | 250 | 8.49e-15 | 71.6 |
| MS.gene63385.t1 | MTR_5g043880 | 34.483 | 116 | 73 | 1 | 16 | 131 | 123 | 235 | 1.49e-14 | 70.1 |
| MS.gene63385.t1 | MTR_7g079010 | 49.180 | 61 | 28 | 1 | 15 | 75 | 139 | 196 | 2.18e-14 | 68.9 |
| MS.gene63385.t1 | MTR_8g092140 | 48.333 | 60 | 28 | 1 | 15 | 74 | 158 | 214 | 2.34e-14 | 69.3 |
| MS.gene63385.t1 | MTR_4g082580 | 40.230 | 87 | 49 | 1 | 15 | 101 | 276 | 359 | 2.71e-14 | 70.5 |
| MS.gene63385.t1 | MTR_5g091390 | 47.761 | 67 | 30 | 2 | 16 | 80 | 156 | 219 | 1.18e-13 | 68.2 |
| MS.gene63385.t1 | MTR_3g095080 | 46.667 | 60 | 29 | 1 | 15 | 74 | 166 | 222 | 1.57e-13 | 67.0 |
| MS.gene63385.t1 | MTR_7g109800 | 50.847 | 59 | 26 | 1 | 16 | 74 | 144 | 199 | 1.93e-13 | 67.4 |
| MS.gene63385.t1 | MTR_3g095080 | 46.667 | 60 | 29 | 1 | 15 | 74 | 142 | 198 | 2.19e-13 | 66.2 |
| MS.gene63385.t1 | MTR_7g100510 | 43.023 | 86 | 45 | 2 | 11 | 96 | 356 | 437 | 2.76e-13 | 67.4 |
| MS.gene63385.t1 | MTR_5g042920 | 39.216 | 102 | 50 | 4 | 15 | 108 | 318 | 415 | 3.80e-13 | 67.0 |
| MS.gene63385.t1 | MTR_7g028415 | 46.667 | 60 | 29 | 1 | 15 | 74 | 91 | 147 | 5.23e-13 | 64.3 |
| MS.gene63385.t1 | MTR_7g028710 | 46.667 | 60 | 29 | 1 | 15 | 74 | 91 | 147 | 5.23e-13 | 64.3 |
| MS.gene63385.t1 | MTR_1g086790 | 49.153 | 59 | 27 | 1 | 16 | 74 | 157 | 212 | 6.62e-13 | 66.2 |
| MS.gene63385.t1 | MTR_2g105060 | 42.029 | 69 | 38 | 1 | 7 | 75 | 84 | 150 | 1.11e-12 | 64.7 |
| MS.gene63385.t1 | MTR_2g105060 | 42.029 | 69 | 38 | 1 | 7 | 75 | 159 | 225 | 1.36e-12 | 65.1 |
| MS.gene63385.t1 | MTR_8g007270 | 45.902 | 61 | 30 | 1 | 15 | 75 | 152 | 209 | 1.89e-12 | 63.9 |
| MS.gene63385.t1 | MTR_4g122530 | 45.763 | 59 | 29 | 1 | 16 | 74 | 207 | 262 | 3.45e-12 | 64.3 |
| MS.gene63385.t1 | MTR_5g016610 | 43.056 | 72 | 39 | 1 | 18 | 89 | 200 | 269 | 6.60e-12 | 62.8 |
| MS.gene63385.t1 | MTR_7g011820 | 45.902 | 61 | 30 | 1 | 15 | 75 | 408 | 465 | 7.86e-12 | 63.5 |
| MS.gene63385.t1 | MTR_5g073620 | 43.750 | 64 | 36 | 0 | 17 | 80 | 672 | 735 | 7.90e-12 | 63.5 |
| MS.gene63385.t1 | MTR_3g095040 | 41.333 | 75 | 40 | 2 | 2 | 75 | 102 | 173 | 8.14e-12 | 61.6 |
| MS.gene63385.t1 | MTR_5g094430 | 44.262 | 61 | 31 | 1 | 15 | 75 | 362 | 419 | 1.86e-11 | 62.4 |
| MS.gene63385.t1 | MTR_2g033820 | 45.763 | 59 | 29 | 1 | 16 | 74 | 202 | 257 | 2.24e-11 | 62.0 |
| MS.gene63385.t1 | MTR_3g056100 | 44.262 | 61 | 31 | 1 | 15 | 75 | 400 | 457 | 2.35e-11 | 62.0 |
| MS.gene63385.t1 | MTR_3g056100 | 44.262 | 61 | 31 | 1 | 15 | 75 | 413 | 470 | 2.53e-11 | 62.0 |
| MS.gene63385.t1 | MTR_5g094430 | 44.262 | 61 | 31 | 1 | 15 | 75 | 250 | 307 | 3.26e-11 | 61.6 |
| MS.gene63385.t1 | MTR_5g094430 | 44.262 | 61 | 31 | 1 | 15 | 75 | 228 | 285 | 3.37e-11 | 61.6 |
| MS.gene63385.t1 | MTR_7g062220 | 50.000 | 60 | 27 | 1 | 15 | 74 | 122 | 178 | 3.59e-11 | 61.2 |
| MS.gene63385.t1 | MTR_1g013760 | 42.029 | 69 | 38 | 1 | 7 | 75 | 130 | 196 | 4.07e-11 | 60.8 |
| MS.gene63385.t1 | MTR_4g127040 | 39.726 | 73 | 42 | 1 | 18 | 90 | 246 | 316 | 4.67e-11 | 60.8 |
| MS.gene63385.t1 | MTR_3g056100 | 44.262 | 61 | 31 | 1 | 15 | 75 | 256 | 313 | 4.74e-11 | 61.2 |
| MS.gene63385.t1 | MTR_3g056100 | 44.262 | 61 | 31 | 1 | 15 | 75 | 269 | 326 | 4.98e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63385.t1 | AT5G22570 | 58.904 | 73 | 29 | 1 | 7 | 78 | 99 | 171 | 6.93e-24 | 95.9 |
| MS.gene63385.t1 | AT5G01900 | 54.545 | 66 | 30 | 0 | 12 | 77 | 105 | 170 | 2.66e-21 | 88.2 |
| MS.gene63385.t1 | AT1G66560 | 52.941 | 68 | 32 | 0 | 17 | 84 | 103 | 170 | 2.89e-21 | 87.8 |
| MS.gene63385.t1 | AT1G66600 | 55.556 | 63 | 28 | 0 | 16 | 78 | 102 | 164 | 8.36e-21 | 86.7 |
| MS.gene63385.t1 | AT1G66550 | 50.746 | 67 | 33 | 0 | 18 | 84 | 104 | 170 | 3.50e-20 | 85.1 |
| MS.gene63385.t1 | AT1G66550 | 50.746 | 67 | 33 | 0 | 18 | 84 | 109 | 175 | 4.59e-20 | 84.7 |
| MS.gene63385.t1 | AT3G56400 | 46.269 | 67 | 36 | 0 | 13 | 79 | 116 | 182 | 2.83e-19 | 83.6 |
| MS.gene63385.t1 | AT1G80590 | 52.459 | 61 | 29 | 0 | 18 | 78 | 86 | 146 | 4.37e-19 | 82.0 |
| MS.gene63385.t1 | AT5G24110 | 46.341 | 82 | 39 | 2 | 16 | 93 | 112 | 192 | 2.28e-17 | 78.2 |
| MS.gene63385.t1 | AT4G11070 | 33.333 | 129 | 75 | 4 | 17 | 135 | 109 | 236 | 4.25e-16 | 74.7 |
| MS.gene63385.t1 | AT4G11070 | 32.812 | 128 | 77 | 3 | 17 | 135 | 141 | 268 | 6.13e-16 | 74.7 |
| MS.gene63385.t1 | AT2G40750 | 46.667 | 60 | 32 | 0 | 17 | 76 | 152 | 211 | 2.99e-15 | 72.8 |
| MS.gene63385.t1 | AT2G46400 | 47.541 | 61 | 32 | 0 | 16 | 76 | 103 | 163 | 3.38e-15 | 72.4 |
| MS.gene63385.t1 | AT2G40740 | 45.000 | 60 | 33 | 0 | 17 | 76 | 173 | 232 | 4.77e-15 | 72.0 |
| MS.gene63385.t1 | AT4G23810 | 43.284 | 67 | 38 | 0 | 17 | 83 | 158 | 224 | 4.98e-15 | 72.0 |
| MS.gene63385.t1 | AT2G40740 | 45.000 | 60 | 33 | 0 | 17 | 76 | 182 | 241 | 5.82e-15 | 71.6 |
| MS.gene63385.t1 | AT1G64000 | 49.180 | 61 | 28 | 1 | 15 | 75 | 112 | 169 | 1.66e-14 | 68.9 |
| MS.gene63385.t1 | AT2G37260 | 43.617 | 94 | 39 | 4 | 16 | 109 | 348 | 427 | 6.05e-14 | 69.3 |
| MS.gene63385.t1 | AT2G37260 | 43.617 | 94 | 39 | 4 | 16 | 109 | 266 | 345 | 6.74e-14 | 68.9 |
| MS.gene63385.t1 | AT2G37260 | 43.617 | 94 | 39 | 4 | 16 | 109 | 268 | 347 | 6.80e-14 | 68.9 |
| MS.gene63385.t1 | AT4G18170 | 50.000 | 60 | 27 | 1 | 16 | 75 | 171 | 227 | 1.89e-13 | 67.8 |
| MS.gene63385.t1 | AT5G41570 | 47.541 | 61 | 29 | 1 | 15 | 75 | 96 | 153 | 2.05e-13 | 65.5 |
| MS.gene63385.t1 | AT1G29860 | 50.000 | 60 | 27 | 1 | 16 | 75 | 135 | 191 | 2.27e-13 | 67.0 |
| MS.gene63385.t1 | AT1G69310 | 47.458 | 59 | 28 | 1 | 16 | 74 | 146 | 201 | 3.18e-13 | 66.6 |
| MS.gene63385.t1 | AT1G69310 | 47.458 | 59 | 28 | 1 | 16 | 74 | 146 | 201 | 3.18e-13 | 66.6 |
| MS.gene63385.t1 | AT1G69310 | 47.458 | 59 | 28 | 1 | 16 | 74 | 146 | 201 | 3.18e-13 | 66.6 |
| MS.gene63385.t1 | AT2G03340 | 41.558 | 77 | 42 | 1 | 15 | 91 | 413 | 486 | 3.23e-13 | 67.4 |
| MS.gene63385.t1 | AT4G31800 | 43.478 | 69 | 37 | 1 | 7 | 75 | 101 | 167 | 3.82e-13 | 65.9 |
| MS.gene63385.t1 | AT2G46130 | 43.939 | 66 | 34 | 1 | 10 | 75 | 23 | 85 | 5.43e-13 | 62.8 |
| MS.gene63385.t1 | AT4G31800 | 44.615 | 65 | 34 | 1 | 11 | 75 | 170 | 232 | 6.40e-13 | 66.2 |
| MS.gene63385.t1 | AT4G39410 | 45.000 | 60 | 30 | 1 | 15 | 74 | 221 | 277 | 8.63e-13 | 65.9 |
| MS.gene63385.t1 | AT5G46350 | 48.333 | 60 | 28 | 1 | 16 | 75 | 182 | 238 | 9.53e-13 | 65.9 |
| MS.gene63385.t1 | AT2G44745 | 45.902 | 61 | 30 | 1 | 15 | 75 | 143 | 200 | 1.17e-12 | 64.3 |
| MS.gene63385.t1 | AT1G13960 | 47.541 | 61 | 29 | 1 | 15 | 75 | 407 | 464 | 1.35e-12 | 65.9 |
| MS.gene63385.t1 | AT5G13080 | 47.541 | 61 | 29 | 1 | 15 | 75 | 65 | 122 | 1.46e-12 | 62.8 |
| MS.gene63385.t1 | AT5G49520 | 47.458 | 59 | 28 | 1 | 16 | 74 | 220 | 275 | 1.55e-12 | 65.5 |
| MS.gene63385.t1 | AT2G25000 | 44.615 | 65 | 34 | 1 | 11 | 75 | 97 | 159 | 2.56e-12 | 63.5 |
| MS.gene63385.t1 | AT2G25000 | 44.615 | 65 | 34 | 1 | 11 | 75 | 97 | 159 | 2.56e-12 | 63.5 |
| MS.gene63385.t1 | AT2G47260 | 43.662 | 71 | 37 | 1 | 16 | 86 | 173 | 240 | 3.03e-12 | 64.3 |
| MS.gene63385.t1 | AT2G25000 | 44.615 | 65 | 34 | 1 | 11 | 75 | 119 | 181 | 3.13e-12 | 63.5 |
| MS.gene63385.t1 | AT1G13960 | 47.541 | 61 | 29 | 1 | 15 | 75 | 254 | 311 | 3.89e-12 | 63.9 |
| MS.gene63385.t1 | AT2G25000 | 44.615 | 65 | 34 | 1 | 11 | 75 | 140 | 202 | 4.42e-12 | 63.5 |
| MS.gene63385.t1 | AT5G26170 | 40.984 | 61 | 33 | 1 | 15 | 75 | 111 | 168 | 6.50e-12 | 61.6 |
| MS.gene63385.t1 | AT2G04880 | 47.541 | 61 | 29 | 1 | 15 | 75 | 281 | 338 | 8.07e-12 | 63.5 |
| MS.gene63385.t1 | AT2G04880 | 47.541 | 61 | 29 | 1 | 15 | 75 | 305 | 362 | 9.48e-12 | 63.2 |
| MS.gene63385.t1 | AT5G45260 | 44.828 | 58 | 32 | 0 | 18 | 75 | 1209 | 1266 | 1.64e-11 | 62.8 |
| MS.gene63385.t1 | AT2G30590 | 50.000 | 58 | 27 | 1 | 18 | 75 | 314 | 369 | 6.22e-11 | 60.8 |
Find 34 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAGATATCACATTAT+TGG | 0.160744 | 2.4:+21757719 | MS.gene63385:CDS |
| TAGGGTATTGTTCTTTGATT+TGG | 0.255964 | 2.4:-21757788 | None:intergenic |
| GGTAATCTGATGTTATTAAT+TGG | 0.288389 | 2.4:-21757881 | None:intergenic |
| TAATATATGGTTCTGTATAA+TGG | 0.331566 | 2.4:-21757666 | None:intergenic |
| GGCTATGAATGGAGAAAGTA+TGG | 0.339396 | 2.4:+21757409 | MS.gene63385:CDS |
| ATTATGATGGCCATAATATA+TGG | 0.342578 | 2.4:-21757679 | None:intergenic |
| TTATACAGAACCATATATTA+TGG | 0.345556 | 2.4:+21757669 | MS.gene63385:CDS |
| TTCAATTTCATGATGGTTGT+GGG | 0.364141 | 2.4:+21757976 | MS.gene63385:CDS |
| CTTCAATTTCATGATGGTTG+TGG | 0.366368 | 2.4:+21757975 | MS.gene63385:CDS |
| GGTATTGTTCTTTGATTTGG+AGG | 0.380524 | 2.4:-21757785 | None:intergenic |
| GTGACCAATGTGGTGATCAT+AGG | 0.391548 | 2.4:-21757856 | None:intergenic |
| AACATAGAAGAAGTACTATT+AGG | 0.393005 | 2.4:-21757744 | None:intergenic |
| TAAGATCAAAAGCACTTACT+TGG | 0.396882 | 2.4:+21757356 | MS.gene63385:intron |
| AACAAATACTGTTGATCCTA+TGG | 0.399169 | 2.4:+21758010 | MS.gene63385:CDS |
| AAGATGAATTTGATTATTTG+AGG | 0.408137 | 2.4:+21757922 | MS.gene63385:CDS |
| GATGGTTGTGGGCGCAATCT+TGG | 0.419474 | 2.4:+21757987 | MS.gene63385:CDS |
| TAGGGATTAATCACTTCTAT+AGG | 0.427943 | 2.4:-21757837 | None:intergenic |
| GATATCTGAATTTAATAAAG+AGG | 0.448286 | 2.4:-21757709 | None:intergenic |
| CAATCTCTTCAATTTCATGA+TGG | 0.464117 | 2.4:+21757969 | MS.gene63385:CDS |
| GGAGGCTGTCATTGAAGCTA+AGG | 0.512687 | 2.4:-21757767 | None:intergenic |
| TGATTGAAGATGGCTATGAA+TGG | 0.519157 | 2.4:+21757398 | MS.gene63385:CDS |
| TAATCAATGCAAAATACCTC+AGG | 0.531627 | 2.4:+21757443 | MS.gene63385:CDS |
| TGACCAATGTGGTGATCATA+GGG | 0.567460 | 2.4:-21757855 | None:intergenic |
| AAGATCAAAAGCACTTACTT+GGG | 0.571753 | 2.4:+21757357 | MS.gene63385:intron |
| AAAAGCACTTACTTGGGAGA+AGG | 0.572656 | 2.4:+21757363 | MS.gene63385:CDS |
| TATATGGTTCTGTATAATGG+AGG | 0.587652 | 2.4:-21757663 | None:intergenic |
| CTTACCTAATTAAAATCCAT+AGG | 0.595764 | 2.4:-21758026 | None:intergenic |
| ATATGGTTCTGTATAATGGA+GGG | 0.605962 | 2.4:-21757662 | None:intergenic |
| ATGAAATTGAAGAGATTGTG+TGG | 0.612061 | 2.4:-21757964 | None:intergenic |
| CTTCATAATCACATGAGAGA+GGG | 0.620688 | 2.4:-21757902 | None:intergenic |
| ACATGTGCAGAGAATTCAAG+AGG | 0.632753 | 2.4:+21757638 | MS.gene63385:CDS |
| TCTTCATAATCACATGAGAG+AGG | 0.633424 | 2.4:-21757903 | None:intergenic |
| AATCCCTATGATCACCACAT+TGG | 0.633844 | 2.4:+21757852 | MS.gene63385:CDS |
| TTAATTGGCTGTGACCAATG+TGG | 0.819551 | 2.4:-21757866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAGAAATATGATATTTAT+TGG | + | chr2.4:21757315-21757334 | MS.gene63385:intron | 15.0% |
| !! | AAATTCAGATATCACATTAT+TGG | + | chr2.4:21757719-21757738 | MS.gene63385:CDS | 20.0% |
| !! | AAGATGAATTTGATTATTTG+AGG | + | chr2.4:21757922-21757941 | MS.gene63385:CDS | 20.0% |
| !! | CAATATATCATTCATATCAT+AGG | + | chr2.4:21757565-21757584 | MS.gene63385:intron | 20.0% |
| !! | GATATCTGAATTTAATAAAG+AGG | - | chr2.4:21757712-21757731 | None:intergenic | 20.0% |
| !! | TTATACAGAACCATATATTA+TGG | + | chr2.4:21757669-21757688 | MS.gene63385:CDS | 20.0% |
| !!! | TAATATATGGTTCTGTATAA+TGG | - | chr2.4:21757669-21757688 | None:intergenic | 20.0% |
| ! | ATTATGATGGCCATAATATA+TGG | - | chr2.4:21757682-21757701 | None:intergenic | 25.0% |
| ! | GGTAATCTGATGTTATTAAT+TGG | - | chr2.4:21757884-21757903 | None:intergenic | 25.0% |
| ! | TTGTGGATGATAAAAATGTA+GGG | - | chr2.4:21757809-21757828 | None:intergenic | 25.0% |
| ! | TTTGTGGATGATAAAAATGT+AGG | - | chr2.4:21757810-21757829 | None:intergenic | 25.0% |
| !! | ATTGATGATATATATACCTG+AGG | - | chr2.4:21757462-21757481 | None:intergenic | 25.0% |
| !! | ATTTTTATCATCCACAAAAC+TGG | + | chr2.4:21757812-21757831 | MS.gene63385:CDS | 25.0% |
| !!! | AACATAGAAGAAGTACTATT+AGG | - | chr2.4:21757747-21757766 | None:intergenic | 25.0% |
| AACAAATACTGTTGATCCTA+TGG | + | chr2.4:21758010-21758029 | MS.gene63385:CDS | 30.0% | |
| ATGAAATTGAAGAGATTGTG+TGG | - | chr2.4:21757967-21757986 | None:intergenic | 30.0% | |
| CAATCTCTTCAATTTCATGA+TGG | + | chr2.4:21757969-21757988 | MS.gene63385:CDS | 30.0% | |
| TAATCAATGCAAAATACCTC+AGG | + | chr2.4:21757443-21757462 | MS.gene63385:CDS | 30.0% | |
| TAGGGATTAATCACTTCTAT+AGG | - | chr2.4:21757840-21757859 | None:intergenic | 30.0% | |
| TTCAATTTCATGATGGTTGT+GGG | + | chr2.4:21757976-21757995 | MS.gene63385:CDS | 30.0% | |
| ! | AAGAGGTTTTGCAATTATGA+TGG | - | chr2.4:21757695-21757714 | None:intergenic | 30.0% |
| ! | ATATGGTTCTGTATAATGGA+GGG | - | chr2.4:21757665-21757684 | None:intergenic | 30.0% |
| ! | TATATGGTTCTGTATAATGG+AGG | - | chr2.4:21757666-21757685 | None:intergenic | 30.0% |
| !! | AAGATCAAAAGCACTTACTT+GGG | + | chr2.4:21757357-21757376 | MS.gene63385:intron | 30.0% |
| !! | TAAGATCAAAAGCACTTACT+TGG | + | chr2.4:21757356-21757375 | MS.gene63385:intron | 30.0% |
| !! | TAGGGTATTGTTCTTTGATT+TGG | - | chr2.4:21757791-21757810 | None:intergenic | 30.0% |
| !!! | AGCTCAATTTTGATTGAAGA+TGG | + | chr2.4:21757388-21757407 | MS.gene63385:CDS | 30.0% |
| CTTCAATTTCATGATGGTTG+TGG | + | chr2.4:21757975-21757994 | MS.gene63385:CDS | 35.0% | |
| CTTCATAATCACATGAGAGA+GGG | - | chr2.4:21757905-21757924 | None:intergenic | 35.0% | |
| TCTTCATAATCACATGAGAG+AGG | - | chr2.4:21757906-21757925 | None:intergenic | 35.0% | |
| TGATTGAAGATGGCTATGAA+TGG | + | chr2.4:21757398-21757417 | MS.gene63385:CDS | 35.0% | |
| !! | GGTATTGTTCTTTGATTTGG+AGG | - | chr2.4:21757788-21757807 | None:intergenic | 35.0% |
| AATCCCTATGATCACCACAT+TGG | + | chr2.4:21757852-21757871 | MS.gene63385:CDS | 40.0% | |
| ACATGTGCAGAGAATTCAAG+AGG | + | chr2.4:21757638-21757657 | MS.gene63385:CDS | 40.0% | |
| GGCTATGAATGGAGAAAGTA+TGG | + | chr2.4:21757409-21757428 | MS.gene63385:CDS | 40.0% | |
| TGACCAATGTGGTGATCATA+GGG | - | chr2.4:21757858-21757877 | None:intergenic | 40.0% | |
| TTAATTGGCTGTGACCAATG+TGG | - | chr2.4:21757869-21757888 | None:intergenic | 40.0% | |
| ! | TTCTATAGGCTCCAGTTTTG+TGG | - | chr2.4:21757826-21757845 | None:intergenic | 40.0% |
| !! | AAAAGCACTTACTTGGGAGA+AGG | + | chr2.4:21757363-21757382 | MS.gene63385:CDS | 40.0% |
| GTGACCAATGTGGTGATCAT+AGG | - | chr2.4:21757859-21757878 | None:intergenic | 45.0% | |
| GGAGGCTGTCATTGAAGCTA+AGG | - | chr2.4:21757770-21757789 | None:intergenic | 50.0% | |
| GATGGTTGTGGGCGCAATCT+TGG | + | chr2.4:21757987-21758006 | MS.gene63385:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 21757251 | 21758043 | 21757251 | ID=MS.gene63385 |
| chr2.4 | mRNA | 21757251 | 21758043 | 21757251 | ID=MS.gene63385.t1;Parent=MS.gene63385 |
| chr2.4 | exon | 21757251 | 21757255 | 21757251 | ID=MS.gene63385.t1.exon1;Parent=MS.gene63385.t1 |
| chr2.4 | CDS | 21757251 | 21757255 | 21757251 | ID=cds.MS.gene63385.t1;Parent=MS.gene63385.t1 |
| chr2.4 | exon | 21757360 | 21757464 | 21757360 | ID=MS.gene63385.t1.exon2;Parent=MS.gene63385.t1 |
| chr2.4 | CDS | 21757360 | 21757464 | 21757360 | ID=cds.MS.gene63385.t1;Parent=MS.gene63385.t1 |
| chr2.4 | exon | 21757587 | 21758043 | 21757587 | ID=MS.gene63385.t1.exon3;Parent=MS.gene63385.t1 |
| chr2.4 | CDS | 21757587 | 21758043 | 21757587 | ID=cds.MS.gene63385.t1;Parent=MS.gene63385.t1 |
| Gene Sequence |
| Protein sequence |
