AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63415


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63415.t1 MTR_0001s0490 92.878 337 7 1 1 320 1 337 0.0 639
MS.gene63415.t1 MTR_4g125490 37.097 372 150 12 17 314 1 362 4.86e-59 195
MS.gene63415.t1 MTR_2g041430 39.665 358 144 13 25 319 7 355 1.21e-56 187
MS.gene63415.t1 MTR_2g041430 39.554 359 145 13 25 320 7 356 2.67e-56 186
MS.gene63415.t1 MTR_2g041430 39.496 357 144 13 25 318 7 354 5.72e-56 185
MS.gene63415.t1 MTR_5g027030 47.208 197 82 6 25 201 16 210 1.46e-46 160
MS.gene63415.t1 MTR_8g020560 64.706 119 23 3 16 115 1 119 2.25e-44 155
MS.gene63415.t1 MTR_1g017490 55.172 116 30 2 25 118 11 126 2.13e-35 134
MS.gene63415.t1 MTR_1g017490 55.172 116 30 2 25 118 144 259 2.42e-35 135
MS.gene63415.t1 MTR_7g104050 53.906 128 37 4 9 118 66 189 1.01e-34 130
MS.gene63415.t1 MTR_7g104050 56.757 111 30 3 26 118 79 189 1.02e-34 130
MS.gene63415.t1 MTR_3g092330 52.212 113 53 1 12 124 101 212 8.10e-32 124
MS.gene63415.t1 MTR_8g035910 45.926 135 66 3 14 144 38 169 1.29e-26 108
MS.gene63415.t1 MTR_8g035910 39.362 94 50 2 46 132 270 363 6.82e-14 72.4
MS.gene63415.t1 MTR_8g035640 64.103 39 14 0 71 109 51 89 3.79e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63415.t1 AT3G13960 60.550 109 25 2 25 115 16 124 1.42e-41 149
MS.gene63415.t1 AT4G37740 50.725 138 44 3 25 138 164 301 6.98e-38 141
MS.gene63415.t1 AT2G06200 44.118 170 61 4 25 165 6 170 4.03e-36 130
MS.gene63415.t1 AT2G06200 44.118 170 61 4 25 165 45 209 4.60e-36 131
MS.gene63415.t1 AT2G36400 51.261 119 37 2 26 123 77 195 2.14e-34 130
MS.gene63415.t1 AT3G52910 51.786 112 32 3 26 115 83 194 2.05e-31 121
MS.gene63415.t1 AT5G53660 43.919 148 70 3 11 157 49 184 6.59e-31 119
MS.gene63415.t1 AT4G24150 41.538 130 54 1 9 116 95 224 4.91e-25 104
MS.gene63415.t1 AT4G24150 41.538 130 54 1 9 116 133 262 9.89e-25 104
MS.gene63415.t1 AT2G06200 51.000 100 42 2 68 165 4 98 9.61e-24 95.9
MS.gene63415.t1 AT4G24150 35.484 155 53 2 9 116 133 287 6.18e-22 96.3
MS.gene63415.t1 AT2G45480 45.098 102 38 1 29 112 28 129 8.51e-20 88.2
MS.gene63415.t1 AT2G45480 45.098 102 38 1 29 112 26 127 4.62e-19 87.8
MS.gene63415.t1 AT2G45480 39.216 102 54 4 30 131 269 362 6.06e-14 72.4
MS.gene63415.t1 AT2G45480 45.098 102 38 1 29 112 28 129 4.90e-19 87.4
MS.gene63415.t1 AT2G45480 39.216 102 54 4 30 131 271 364 6.33e-14 72.4

Find 90 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGATCTTTAAATATA+TGG 0.195661 4.4:+60371235 MS.gene63415:CDS
CTTAGGCCATTCGCTGAAAA+AGG 0.223874 4.4:-60374086 None:intergenic
GTGAGTTACTGTTCCTTCTA+TGG 0.233204 4.4:+60372076 MS.gene63415:intron
CGCTCACAGTACTTGGAGTC+TGG 0.273319 4.4:-60372175 None:intergenic
CAATACCTGTATTCTTTACT+TGG 0.293844 4.4:-60372421 None:intergenic
ATCTTTAAATATATGGTTGC+TGG 0.294888 4.4:+60371242 MS.gene63415:CDS
AGCTTCTTTGCAGAAGCTTC+AGG 0.320264 4.4:+60373863 MS.gene63415:CDS
TCAGTCCTTCTACATCTTCC+TGG 0.350789 4.4:-60372118 None:intergenic
GCCTGTGGAATCACAAACTA+TGG 0.360463 4.4:+60372231 MS.gene63415:CDS
TTTCCAGCTGCGACTCCATT+TGG 0.360664 4.4:-60373904 None:intergenic
GTTCAAAATACTACAGGTTC+TGG 0.363646 4.4:+60372352 MS.gene63415:CDS
AAGAAGGTGGACCCGGAGCC+AGG 0.384375 4.4:+60372100 MS.gene63415:CDS
CAGAGAGTCGTGGTCTGGTT+TGG 0.386239 4.4:+60374111 MS.gene63415:CDS
CAGGCTTTCTTGAACGGTTG+CGG 0.396165 4.4:-60372213 None:intergenic
GAGTGAAAACTGGAGTGAAT+AGG 0.404684 4.4:-60371293 None:intergenic
CTTCTACATCTTCCTGGCTC+CGG 0.415767 4.4:-60372112 None:intergenic
AGGACAAGATCAGGTGGAAC+AGG 0.419490 4.4:-60371269 None:intergenic
CATTTGTTGTGGGAATGTTC+TGG 0.420078 4.4:-60372318 None:intergenic
CATCTTGATACCATTCCCTA+TGG 0.426022 4.4:+60372394 MS.gene63415:CDS
GTCCACCTTCTTCCCATAGA+AGG 0.426837 4.4:-60372089 None:intergenic
ATTCCCACAACAAATGCATT+TGG 0.432493 4.4:+60372325 MS.gene63415:CDS
TTCTACATCTTCCTGGCTCC+GGG 0.435042 4.4:-60372111 None:intergenic
AATGGTATCAAGATGATAAT+CGG 0.435391 4.4:-60372386 None:intergenic
CATGTGGCGCTCACAGTACT+TGG 0.436354 4.4:-60372182 None:intergenic
TTATCTAGTGAATATGGATC+TGG 0.444100 4.4:+60374028 MS.gene63415:CDS
CTGTTCCTTCTATGGGAAGA+AGG 0.447215 4.4:+60372084 MS.gene63415:CDS
GGTAGTGTTCAAAATACTAC+AGG 0.456240 4.4:+60372346 MS.gene63415:CDS
CTACCAAATGCATTTGTTGT+GGG 0.462866 4.4:-60372328 None:intergenic
GCTGGTGGCAGCAGCAGAGC+TGG 0.465144 4.4:+60372289 MS.gene63415:CDS
GCCATAGTTTGTGATTCCAC+AGG 0.467528 4.4:-60372232 None:intergenic
GACCACGACTCTCTGCTCTT+AGG 0.469607 4.4:-60374103 None:intergenic
TGTGGAGAATGCTGTTTGGT+TGG 0.482035 4.4:-60374146 None:intergenic
TTCTTTACTTGGAATCCCAT+AGG 0.487767 4.4:-60372410 None:intergenic
CGGAGCCAGGAAGATGTAGA+AGG 0.488332 4.4:+60372113 MS.gene63415:CDS
ATTCCACAGGCTTTCTTGAA+CGG 0.489637 4.4:-60372219 None:intergenic
TCTCCAAATGGAGTCGCAGC+TGG 0.490440 4.4:+60373901 MS.gene63415:CDS
TAATTGAACAGGTATCTTCA+AGG 0.495908 4.4:+60373815 MS.gene63415:intron
TGAGTTACTGTTCCTTCTAT+GGG 0.497953 4.4:+60372077 MS.gene63415:CDS
TGAATAGGAAGGACAAGATC+AGG 0.504204 4.4:-60371278 None:intergenic
AGACAACAAGGGTCTCCAAA+TGG 0.506033 4.4:+60373889 MS.gene63415:CDS
AAGAGCAGAGAGTCGTGGTC+TGG 0.507183 4.4:+60374106 MS.gene63415:CDS
CTATGGGAAGAAGGTGGACC+CGG 0.514809 4.4:+60372093 MS.gene63415:CDS
GAGTTGTGGAGAATGCTGTT+TGG 0.516076 4.4:-60374150 None:intergenic
CGGAGGTGTAGGGATGATGA+TGG 0.523373 4.4:+60371157 MS.gene63415:CDS
AGTAGTAACAACGGAGGTGT+AGG 0.523982 4.4:+60371146 MS.gene63415:CDS
GGATTCCAAGTAAAGAATAC+AGG 0.527798 4.4:+60372416 MS.gene63415:CDS
TCTTTACTTGGAATCCCATA+GGG 0.529110 4.4:-60372409 None:intergenic
TGGAGAAGCTGTGAAGGAAG+AGG 0.531350 4.4:+60374048 MS.gene63415:CDS
ACTACCAAATGCATTTGTTG+TGG 0.537213 4.4:-60372329 None:intergenic
GGAAGATGTAGAAGGACTGA+TGG 0.539614 4.4:+60372121 MS.gene63415:CDS
CTTCACAGTGTCTCAGTGGC+AGG 0.545162 4.4:+60371199 MS.gene63415:CDS
GGGATAATCACTTTGCAACA+TGG 0.547856 4.4:-60373993 None:intergenic
ACTTGGAATCCCATAGGGAA+TGG 0.549125 4.4:-60372404 None:intergenic
AGCTTCAGGAGGAGACAACA+AGG 0.549332 4.4:+60373877 MS.gene63415:CDS
GTCAGACGATGACATAGGAA+TGG 0.557702 4.4:-60374185 None:intergenic
GCTCACAGTACTTGGAGTCT+GGG 0.561352 4.4:-60372174 None:intergenic
ATCTTGATACCATTCCCTAT+GGG 0.573222 4.4:+60372395 MS.gene63415:CDS
TCTTCAAGGTCTTAAATCTG+AGG 0.573656 4.4:+60373829 MS.gene63415:CDS
TGGATCTGGAGAAGCTGTGA+AGG 0.577779 4.4:+60374042 MS.gene63415:CDS
GGAGAAGCTGTGAAGGAAGA+GGG 0.582664 4.4:+60374049 MS.gene63415:CDS
GTAGTAACAACGGAGGTGTA+GGG 0.587459 4.4:+60371147 MS.gene63415:CDS
TTCTTTGCAGAAGCTTCAGG+AGG 0.588543 4.4:+60373866 MS.gene63415:CDS
GAGAAGTCAGACGATGACAT+AGG 0.589480 4.4:-60374190 None:intergenic
GGATATTGAAAGTTGAGTTG+TGG 0.598447 4.4:-60374164 None:intergenic
GTGACATCGCTAACTGTCGC+TGG 0.600432 4.4:+60372271 MS.gene63415:CDS
CTTCAAGGTCTTAAATCTGA+GGG 0.600678 4.4:+60373830 MS.gene63415:CDS
AAAAGTATGAATAGCTCTGG+TGG 0.606971 4.4:+60371119 None:intergenic
CACCCTTCACAGTGTCTCAG+TGG 0.621198 4.4:+60371195 MS.gene63415:CDS
GGTTGCGGCCACGATGCATG+TGG 0.624950 4.4:-60372198 None:intergenic
GAAAACTGGAGTGAATAGGA+AGG 0.630125 4.4:-60371289 None:intergenic
AGTATGAATAGCTCTGGTGG+TGG 0.634205 4.4:+60371122 None:intergenic
CAACCGTTCAAGAAAGCCTG+TGG 0.634486 4.4:+60372216 MS.gene63415:CDS
GCAACTCTAGTTGACATCAA+AGG 0.643622 4.4:-60373935 None:intergenic
TGCCACTGAGACACTGTGAA+GGG 0.647925 4.4:-60371197 None:intergenic
GTGTGGCGACTGAGAGCTTG+TGG 0.650050 4.4:-60374215 None:intergenic
GGAGGTGTAGGGATGATGAT+GGG 0.651275 4.4:+60371158 MS.gene63415:CDS
TTCCTTCTATGGGAAGAAGG+TGG 0.660445 4.4:+60372087 MS.gene63415:CDS
GGCCTAAGAGCAGAGAGTCG+TGG 0.662812 4.4:+60374101 MS.gene63415:CDS
ACAAGCTCTCAGTCGCCACA+CGG 0.663120 4.4:+60374217 MS.gene63415:CDS
CTGCCACTGAGACACTGTGA+AGG 0.667964 4.4:-60371198 None:intergenic
AGTCGCAGCTGGAAAACACA+TGG 0.677391 4.4:+60373912 MS.gene63415:CDS
ACATCGCTAACTGTCGCTGG+TGG 0.682168 4.4:+60372274 MS.gene63415:CDS
ATAGGAAGGACAAGATCAGG+TGG 0.684427 4.4:-60371275 None:intergenic
CAAGGTCTTAAATCTGAGGG+TGG 0.691896 4.4:+60373833 MS.gene63415:CDS
GCTTCAGGAGGAGACAACAA+GGG 0.694886 4.4:+60373878 MS.gene63415:CDS
TATCAAGATGATAATCGGCA+CGG 0.696821 4.4:-60372381 None:intergenic
GGTGGTGGCAGTAGTAACAA+CGG 0.699810 4.4:+60371137 MS.gene63415:CDS
TGTGAGCGCCACATGCATCG+TGG 0.717232 4.4:+60372190 MS.gene63415:CDS
GACAGTTAGCGATGTCACAG+TGG 0.746561 4.4:-60372266 None:intergenic
GGTGGCAGTAGTAACAACGG+AGG 0.768714 4.4:+60371140 MS.gene63415:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATAAATAAAAAAATT+AGG - chr4.4:60371591-60371610 None:intergenic 0.0%
!!! TTATATTAAAACAACTTTTT+TGG + chr4.4:60373045-60373064 MS.gene63415:intron 10.0%
!! ATAATACTATGTTTATAACA+TGG + chr4.4:60372630-60372649 MS.gene63415:intron 15.0%
!! TAATATAAACTTCATATTCT+AGG - chr4.4:60373033-60373052 None:intergenic 15.0%
!!! TTCTTTTCAATATTGAAAAA+GGG + chr4.4:60372766-60372785 MS.gene63415:intron 15.0%
!!! TTTCTTTTCAATATTGAAAA+AGG + chr4.4:60372765-60372784 MS.gene63415:intron 15.0%
!! ACTAGATAAAAATGAATGTT+GGG - chr4.4:60374017-60374036 None:intergenic 20.0%
!! ATCTTTAGTAATAACTTGAT+TGG - chr4.4:60371524-60371543 None:intergenic 20.0%
!! GAAACTAAATGAAAAAACAA+AGG - chr4.4:60373552-60373571 None:intergenic 20.0%
!! GTGAAATGATATACATAATA+AGG - chr4.4:60372451-60372470 None:intergenic 20.0%
!! TTCCTTTCAATCAATTTAAT+GGG + chr4.4:60373569-60373588 MS.gene63415:intron 20.0%
!! TTGAAAAGAAAATTGTAAGA+AGG - chr4.4:60372756-60372775 None:intergenic 20.0%
!! TTTCCTTTCAATCAATTTAA+TGG + chr4.4:60373568-60373587 MS.gene63415:intron 20.0%
!!! AGCTTTGATCTTTAAATATA+TGG + chr4.4:60371235-60371254 MS.gene63415:CDS 20.0%
!!! ATTTTTTGTTCCATTCTTTT+CGG - chr4.4:60372510-60372529 None:intergenic 20.0%
!!! TCATTTTTATCTAGTGAATA+TGG + chr4.4:60374022-60374041 MS.gene63415:CDS 20.0%
! AAGATACCTGTTCAATTAAA+CGG - chr4.4:60373813-60373832 None:intergenic 25.0%
! AATGGTATCAAGATGATAAT+CGG - chr4.4:60372389-60372408 None:intergenic 25.0%
! ATCTTTAAATATATGGTTGC+TGG + chr4.4:60371242-60371261 MS.gene63415:CDS 25.0%
! CACTAGATAAAAATGAATGT+TGG - chr4.4:60374018-60374037 None:intergenic 25.0%
! CTAGATAAAAATGAATGTTG+GGG - chr4.4:60374016-60374035 None:intergenic 25.0%
! CTTGTATGATTAAATATGAC+TGG + chr4.4:60373716-60373735 MS.gene63415:intron 25.0%
! TCTAGGAATAAATAAATGCA+TGG - chr4.4:60373016-60373035 None:intergenic 25.0%
! TTAGTTAGTTAGTTACTTAC+AGG - chr4.4:60371357-60371376 None:intergenic 25.0%
! TTCATTAATTTCCGACAAAA+GGG + chr4.4:60373219-60373238 MS.gene63415:intron 25.0%
! TTGAATGTAACTACTTGTAT+TGG + chr4.4:60371700-60371719 MS.gene63415:intron 25.0%
! TTGTTCTCTATATTTGTGTT+GGG + chr4.4:60372849-60372868 MS.gene63415:intron 25.0%
!! AAAGATAGTTAGTTGATTCT+TGG + chr4.4:60371538-60371557 MS.gene63415:intron 25.0%
!! ACTTGTTGATTGCTTTAAAT+TGG + chr4.4:60372471-60372490 MS.gene63415:intron 25.0%
!! ATACTTTTAACCGAAAAGAA+TGG + chr4.4:60372497-60372516 MS.gene63415:intron 25.0%
!! TGAATGTTTCTTATTGATTG+CGG + chr4.4:60371985-60372004 MS.gene63415:intron 25.0%
!! TGCAAATTTTATTCTTTTCG+TGG + chr4.4:60373280-60373299 MS.gene63415:intron 25.0%
!!! CATTTTAGCATGTTAATATG+TGG + chr4.4:60373091-60373110 MS.gene63415:intron 25.0%
AAAACTCAACTGCACAATAA+TGG - chr4.4:60372600-60372619 None:intergenic 30.0%
AAATCCAAATTGACAGATAG+TGG - chr4.4:60371810-60371829 None:intergenic 30.0%
AAATTTGCAGCTAGATTTGA+AGG - chr4.4:60373269-60373288 None:intergenic 30.0%
AACTAAATCTTGCTAGTGTT+TGG + chr4.4:60371910-60371929 MS.gene63415:intron 30.0%
AATCCAAATTGACAGATAGT+GGG - chr4.4:60371809-60371828 None:intergenic 30.0%
AATTTAATGGGACCTTGATT+CGG + chr4.4:60373581-60373600 MS.gene63415:intron 30.0%
AGATACCTGTTCAATTAAAC+GGG - chr4.4:60373812-60373831 None:intergenic 30.0%
ATATGTGTGCAGACAATAAA+GGG - chr4.4:60371621-60371640 None:intergenic 30.0%
ATCTATGTCTCTCTCAAAAA+TGG - chr4.4:60371839-60371858 None:intergenic 30.0%
ATCTGCAGCGATATAATTAT+GGG - chr4.4:60374305-60374324 None:intergenic 30.0%
CAAACGAAAAATCATGAAGA+TGG - chr4.4:60373651-60373670 None:intergenic 30.0%
CAACAATTTACACAAAGATG+TGG - chr4.4:60372693-60372712 None:intergenic 30.0%
CAATACCTGTATTCTTTACT+TGG - chr4.4:60372424-60372443 None:intergenic 30.0%
CATAGACAAAATAACAGTTG+AGG - chr4.4:60372814-60372833 None:intergenic 30.0%
CATCAAATATGCAGCTATTA+GGG - chr4.4:60371470-60371489 None:intergenic 30.0%
CTTCATTAATTTCCGACAAA+AGG + chr4.4:60373218-60373237 MS.gene63415:intron 30.0%
CTTGTTCTCTATATTTGTGT+TGG + chr4.4:60372848-60372867 MS.gene63415:intron 30.0%
GAAAGAATGACAAGAGTTAT+TGG + chr4.4:60372712-60372731 MS.gene63415:intron 30.0%
GACGTCAGACAAATTTATTT+GGG + chr4.4:60373446-60373465 MS.gene63415:intron 30.0%
GCAACAAATTATAAGCGAAA+AGG + chr4.4:60373741-60373760 MS.gene63415:intron 30.0%
GTAAATTTACAAGCACAGTT+AGG - chr4.4:60372055-60372074 None:intergenic 30.0%
GTCCCATTAAATTGATTGAA+AGG - chr4.4:60373574-60373593 None:intergenic 30.0%
TAATTGAACAGGTATCTTCA+AGG + chr4.4:60373815-60373834 MS.gene63415:intron 30.0%
TATCTGCAGCGATATAATTA+TGG - chr4.4:60374306-60374325 None:intergenic 30.0%
TCAAAATGTCATTCGAAAAG+TGG - chr4.4:60372941-60372960 None:intergenic 30.0%
TCATCAAATATGCAGCTATT+AGG - chr4.4:60371471-60371490 None:intergenic 30.0%
TGACGTCAGACAAATTTATT+TGG + chr4.4:60373445-60373464 MS.gene63415:intron 30.0%
TTAGTTAGTTACTTACAGGT+AGG - chr4.4:60371353-60371372 None:intergenic 30.0%
TTATCTAGTGAATATGGATC+TGG + chr4.4:60374028-60374047 MS.gene63415:CDS 30.0%
TTGGCTGCATTATTCAATTA+TGG + chr4.4:60371929-60371948 MS.gene63415:intron 30.0%
TTGTAAGCAGTAAAAGCTAT+AGG - chr4.4:60371964-60371983 None:intergenic 30.0%
! AGTTATTGGTTACTTTGCTT+TGG + chr4.4:60372726-60372745 MS.gene63415:intron 30.0%
! CGGTGAGATATATTTAAGTT+CGG + chr4.4:60374237-60374256 MS.gene63415:intron 30.0%
! CTTTTGTCGGAAATTAATGA+AGG - chr4.4:60373220-60373239 None:intergenic 30.0%
! GTTATTGGTTACTTTGCTTT+GGG + chr4.4:60372727-60372746 MS.gene63415:intron 30.0%
!! ACATTTTGACAAAATTGCGA+GGG + chr4.4:60372952-60372971 MS.gene63415:intron 30.0%
!! TGATTTTGATGCAGAAAAAG+AGG - chr4.4:60373960-60373979 None:intergenic 30.0%
!! TTTTGAGAGAGACATAGATT+TGG + chr4.4:60371840-60371859 MS.gene63415:intron 30.0%
!!! CTTTTTTATACTACATGACG+TGG + chr4.4:60373767-60373786 MS.gene63415:intron 30.0%
AGAAGAAAGAGAGTGAAAAC+TGG - chr4.4:60371306-60371325 None:intergenic 35.0%
AGTATAATGAGCTGAAGAGA+AGG - chr4.4:60371887-60371906 None:intergenic 35.0%
AGTTACTTACAGGTAGGAAT+AGG - chr4.4:60371347-60371366 None:intergenic 35.0%
ATAACTTGATTGGATCTCTC+AGG - chr4.4:60371514-60371533 None:intergenic 35.0%
ATCTTGATACCATTCCCTAT+GGG + chr4.4:60372395-60372414 MS.gene63415:CDS 35.0%
ATGCCTTTAATCCAAAGTGT+CGG + chr4.4:60371743-60371762 MS.gene63415:intron 35.0%
ATGTCATTCGAAAAGTGGTT+TGG - chr4.4:60372936-60372955 None:intergenic 35.0%
ATTCCCACAACAAATGCATT+TGG + chr4.4:60372325-60372344 MS.gene63415:CDS 35.0%
CATATGTGTGCAGACAATAA+AGG - chr4.4:60371622-60371641 None:intergenic 35.0%
CTTAAATATATCTCACCGTG+TGG - chr4.4:60374235-60374254 None:intergenic 35.0%
CTTCAAGGTCTTAAATCTGA+GGG + chr4.4:60373830-60373849 MS.gene63415:CDS 35.0%
GGATTCCAAGTAAAGAATAC+AGG + chr4.4:60372416-60372435 MS.gene63415:CDS 35.0%
GGTAGTGTTCAAAATACTAC+AGG + chr4.4:60372346-60372365 MS.gene63415:CDS 35.0%
GTTACTTACAGGTAGGAATA+GGG - chr4.4:60371346-60371365 None:intergenic 35.0%
GTTCAAAATACTACAGGTTC+TGG + chr4.4:60372352-60372371 MS.gene63415:CDS 35.0%
TATCAAGATGATAATCGGCA+CGG - chr4.4:60372384-60372403 None:intergenic 35.0%
TCAAAGAGAGCAACATGATA+TGG - chr4.4:60373309-60373328 None:intergenic 35.0%
TCTTCAAGGTCTTAAATCTG+AGG + chr4.4:60373829-60373848 MS.gene63415:CDS 35.0%
TCTTTACTTGGAATCCCATA+GGG - chr4.4:60372412-60372431 None:intergenic 35.0%
TGAGTTACTGTTCCTTCTAT+GGG + chr4.4:60372077-60372096 MS.gene63415:CDS 35.0%
TGTCATTCGAAAAGTGGTTT+GGG - chr4.4:60372935-60372954 None:intergenic 35.0%
TTCAAAGCTTGAACTTCTGA+TGG + chr4.4:60373517-60373536 MS.gene63415:intron 35.0%
TTCTTTACTTGGAATCCCAT+AGG - chr4.4:60372413-60372432 None:intergenic 35.0%
TTTCCCACTATCTGTCAATT+TGG + chr4.4:60371803-60371822 MS.gene63415:intron 35.0%
! ACTACCAAATGCATTTGTTG+TGG - chr4.4:60372332-60372351 None:intergenic 35.0%
! GGATATTGAAAGTTGAGTTG+TGG - chr4.4:60374167-60374186 None:intergenic 35.0%
! TTCGTTTGTAGTATCGAACA+TGG + chr4.4:60373663-60373682 MS.gene63415:intron 35.0%
!! CTACCAAATGCATTTGTTGT+GGG - chr4.4:60372331-60372350 None:intergenic 35.0%
!! GACATTTTGACAAAATTGCG+AGG + chr4.4:60372951-60372970 MS.gene63415:intron 35.0%
!! TCTTGGCTTGTTACTTAGAA+GGG + chr4.4:60371555-60371574 MS.gene63415:intron 35.0%
!! TTCTTGGCTTGTTACTTAGA+AGG + chr4.4:60371554-60371573 MS.gene63415:intron 35.0%
AAAATTGCGAGGGAGAAAGA+CGG + chr4.4:60372962-60372981 MS.gene63415:intron 40.0%
ATGATGAACTTGCCGAATCA+AGG - chr4.4:60373596-60373615 None:intergenic 40.0%
ATTCCACAGGCTTTCTTGAA+CGG - chr4.4:60372222-60372241 None:intergenic 40.0%
ATTGGATCTCTCAGGAACAA+AGG - chr4.4:60371506-60371525 None:intergenic 40.0%
CATCTTGATACCATTCCCTA+TGG + chr4.4:60372394-60372413 MS.gene63415:CDS 40.0%
CTAATGCTTGTGAATCTCTG+TGG - chr4.4:60372668-60372687 None:intergenic 40.0%
GAAAACTGGAGTGAATAGGA+AGG - chr4.4:60371292-60371311 None:intergenic 40.0%
GAAGGACTGATGGAAAAAAG+TGG + chr4.4:60372131-60372150 MS.gene63415:CDS 40.0%
GAGTGAAAACTGGAGTGAAT+AGG - chr4.4:60371296-60371315 None:intergenic 40.0%
GATTCGGCAAGTTCATCATA+TGG + chr4.4:60373597-60373616 MS.gene63415:intron 40.0%
GCAACTCTAGTTGACATCAA+AGG - chr4.4:60373938-60373957 None:intergenic 40.0%
GGGATAATCACTTTGCAACA+TGG - chr4.4:60373996-60374015 None:intergenic 40.0%
GTGAGTTACTGTTCCTTCTA+TGG + chr4.4:60372076-60372095 MS.gene63415:intron 40.0%
TGAATAGGAAGGACAAGATC+AGG - chr4.4:60371281-60371300 None:intergenic 40.0%
TTAGGCCATTCGCTGAAAAA+GGG - chr4.4:60374088-60374107 None:intergenic 40.0%
TTGGATCTCTCAGGAACAAA+GGG - chr4.4:60371505-60371524 None:intergenic 40.0%
! AAAGTGGTTTGGGTGATTCA+TGG - chr4.4:60372925-60372944 None:intergenic 40.0%
! CTAGAGTGTGTCTGAAATGT+TGG + chr4.4:60372009-60372028 MS.gene63415:intron 40.0%
! CTTTGGATTAAAGGCATGTC+CGG - chr4.4:60371740-60371759 None:intergenic 40.0%
!! AAAAAAGTGGAGGTGCTCAA+AGG + chr4.4:60372144-60372163 MS.gene63415:CDS 40.0%
!! CATTTGTTGTGGGAATGTTC+TGG - chr4.4:60372321-60372340 None:intergenic 40.0%
!! TACTTGTATTGGTGTCGTGT+CGG + chr4.4:60371711-60371730 MS.gene63415:intron 40.0%
!! TCATGGAGATCTACTGATTC+CGG - chr4.4:60372908-60372927 None:intergenic 40.0%
!! TGACAGATAGTGGGAAATGA+TGG - chr4.4:60371800-60371819 None:intergenic 40.0%
ACTTACAGGTAGGAATAGGG+TGG - chr4.4:60371343-60371362 None:intergenic 45.0%
ACTTGGAATCCCATAGGGAA+TGG - chr4.4:60372407-60372426 None:intergenic 45.0%
AGACAACAAGGGTCTCCAAA+TGG + chr4.4:60373889-60373908 MS.gene63415:CDS 45.0%
AGCTTCTTTGCAGAAGCTTC+AGG + chr4.4:60373863-60373882 MS.gene63415:CDS 45.0%
ATAGGAAGGACAAGATCAGG+TGG - chr4.4:60371278-60371297 None:intergenic 45.0%
CAAGGTCTTAAATCTGAGGG+TGG + chr4.4:60373833-60373852 MS.gene63415:CDS 45.0%
CTGTTCCTTCTATGGGAAGA+AGG + chr4.4:60372084-60372103 MS.gene63415:CDS 45.0%
CTTAGGCCATTCGCTGAAAA+AGG - chr4.4:60374089-60374108 None:intergenic 45.0%
GAGAAGTCAGACGATGACAT+AGG - chr4.4:60374193-60374212 None:intergenic 45.0%
GAGGGCTAGGTATTAGATAC+CGG + chr4.4:60372886-60372905 MS.gene63415:intron 45.0%
GAGTTGTGGAGAATGCTGTT+TGG - chr4.4:60374153-60374172 None:intergenic 45.0%
GCCTGTGGAATCACAAACTA+TGG + chr4.4:60372231-60372250 MS.gene63415:CDS 45.0%
GGAAGATGTAGAAGGACTGA+TGG + chr4.4:60372121-60372140 MS.gene63415:CDS 45.0%
GGACTGATGGAAAAAAGTGG+AGG + chr4.4:60372134-60372153 MS.gene63415:CDS 45.0%
GTCAGACGATGACATAGGAA+TGG - chr4.4:60374188-60374207 None:intergenic 45.0%
TCAGTCCTTCTACATCTTCC+TGG - chr4.4:60372121-60372140 None:intergenic 45.0%
TGGATCTCTCAGGAACAAAG+GGG - chr4.4:60371504-60371523 None:intergenic 45.0%
TTATCCCCATGTGACAGCTA+TGG - chr4.4:60373133-60373152 None:intergenic 45.0%
TTCCTTCTATGGGAAGAAGG+TGG + chr4.4:60372087-60372106 MS.gene63415:CDS 45.0%
TTCTTTGCAGAAGCTTCAGG+AGG + chr4.4:60373866-60373885 MS.gene63415:CDS 45.0%
! AGCGTCAAACACCCTTTTGT+CGG - chr4.4:60373233-60373252 None:intergenic 45.0%
! AGTAGTAACAACGGAGGTGT+AGG + chr4.4:60371146-60371165 MS.gene63415:CDS 45.0%
! GCCATAGTTTGTGATTCCAC+AGG - chr4.4:60372235-60372254 None:intergenic 45.0%
! GTAGTAACAACGGAGGTGTA+GGG + chr4.4:60371147-60371166 MS.gene63415:CDS 45.0%
! TGTGGAGAATGCTGTTTGGT+TGG - chr4.4:60374149-60374168 None:intergenic 45.0%
!! AATGTTTTGCGCCGACACTT+TGG - chr4.4:60371757-60371776 None:intergenic 45.0%
!!! TTCGACCCTTTTTCAGCGAA+TGG + chr4.4:60374080-60374099 MS.gene63415:CDS 45.0%
AGCTTCAGGAGGAGACAACA+AGG + chr4.4:60373877-60373896 MS.gene63415:CDS 50.0%
AGGACAAGATCAGGTGGAAC+AGG - chr4.4:60371272-60371291 None:intergenic 50.0%
AGTCGCAGCTGGAAAACACA+TGG + chr4.4:60373912-60373931 MS.gene63415:CDS 50.0%
ATGGGGATAACGAGCAAGGT+AGG + chr4.4:60373143-60373162 MS.gene63415:intron 50.0%
CAACCGTTCAAGAAAGCCTG+TGG + chr4.4:60372216-60372235 MS.gene63415:CDS 50.0%
CAGGCTTTCTTGAACGGTTG+CGG - chr4.4:60372216-60372235 None:intergenic 50.0%
CGTCGCCCGTTTAATTGAAC+AGG + chr4.4:60373804-60373823 MS.gene63415:intron 50.0%
CTTCTACATCTTCCTGGCTC+CGG - chr4.4:60372115-60372134 None:intergenic 50.0%
GACAGTTAGCGATGTCACAG+TGG - chr4.4:60372269-60372288 None:intergenic 50.0%
GCTCACAGTACTTGGAGTCT+GGG - chr4.4:60372177-60372196 None:intergenic 50.0%
GCTTCAGGAGGAGACAACAA+GGG + chr4.4:60373878-60373897 MS.gene63415:CDS 50.0%
GGAGAAGCTGTGAAGGAAGA+GGG + chr4.4:60374049-60374068 MS.gene63415:CDS 50.0%
GGATCTCTCAGGAACAAAGG+GGG - chr4.4:60371503-60371522 None:intergenic 50.0%
GTCCACCTTCTTCCCATAGA+AGG - chr4.4:60372092-60372111 None:intergenic 50.0%
TCACATGGGGATAACGAGCA+AGG + chr4.4:60373139-60373158 MS.gene63415:intron 50.0%
TCGCTGAAAAAGGGTCGAAG+AGG - chr4.4:60374079-60374098 None:intergenic 50.0%
TGAAAAAGGGTCGAAGAGGC+TGG - chr4.4:60374075-60374094 None:intergenic 50.0%
TGCCACTGAGACACTGTGAA+GGG - chr4.4:60371200-60371219 None:intergenic 50.0%
TGGAGAAGCTGTGAAGGAAG+AGG + chr4.4:60374048-60374067 MS.gene63415:CDS 50.0%
TGGATCTGGAGAAGCTGTGA+AGG + chr4.4:60374042-60374061 MS.gene63415:CDS 50.0%
TGGGTGATACTCTGACACGA+GGG + chr4.4:60372868-60372887 MS.gene63415:intron 50.0%
TTCTACATCTTCCTGGCTCC+GGG - chr4.4:60372114-60372133 None:intergenic 50.0%
TTGGGTGATACTCTGACACG+AGG + chr4.4:60372867-60372886 MS.gene63415:intron 50.0%
TTTCCAGCTGCGACTCCATT+TGG - chr4.4:60373907-60373926 None:intergenic 50.0%
! GCGCCGACACTTTGGATTAA+AGG - chr4.4:60371749-60371768 None:intergenic 50.0%
! GGAGGTGTAGGGATGATGAT+GGG + chr4.4:60371158-60371177 MS.gene63415:CDS 50.0%
! GGTGGTGGCAGTAGTAACAA+CGG + chr4.4:60371137-60371156 MS.gene63415:CDS 50.0%
AAGAGCAGAGAGTCGTGGTC+TGG + chr4.4:60374106-60374125 MS.gene63415:CDS 55.0%
ACAAGCTCTCAGTCGCCACA+CGG + chr4.4:60374217-60374236 MS.gene63415:CDS 55.0%
ACATCGCTAACTGTCGCTGG+TGG + chr4.4:60372274-60372293 MS.gene63415:CDS 55.0%
AGCCTGCCATAGCTGTCACA+TGG + chr4.4:60373124-60373143 MS.gene63415:intron 55.0%
AGCTATGGCAGGCTGACAGA+AGG - chr4.4:60373118-60373137 None:intergenic 55.0%
CACCCTTCACAGTGTCTCAG+TGG + chr4.4:60371195-60371214 MS.gene63415:CDS 55.0%
CAGAGAGTCGTGGTCTGGTT+TGG + chr4.4:60374111-60374130 MS.gene63415:CDS 55.0%
CATGTGGCGCTCACAGTACT+TGG - chr4.4:60372185-60372204 None:intergenic 55.0%
CCTGCCATAGCTGTCACATG+GGG + chr4.4:60373126-60373145 MS.gene63415:intron 55.0%
CGCTCACAGTACTTGGAGTC+TGG - chr4.4:60372178-60372197 None:intergenic 55.0%
CGGAGCCAGGAAGATGTAGA+AGG + chr4.4:60372113-60372132 MS.gene63415:CDS 55.0%
CGGGCGACGAATAACGATGT+TGG - chr4.4:60373793-60373812 None:intergenic 55.0%
CTATGGGAAGAAGGTGGACC+CGG + chr4.4:60372093-60372112 MS.gene63415:CDS 55.0%
CTGCCACTGAGACACTGTGA+AGG - chr4.4:60371201-60371220 None:intergenic 55.0%
CTTCACAGTGTCTCAGTGGC+AGG + chr4.4:60371199-60371218 MS.gene63415:CDS 55.0%
GACCACGACTCTCTGCTCTT+AGG - chr4.4:60374106-60374125 None:intergenic 55.0%
GATACTCTGACACGAGGGCT+AGG + chr4.4:60372873-60372892 MS.gene63415:intron 55.0%
GCCTGCCATAGCTGTCACAT+GGG + chr4.4:60373125-60373144 MS.gene63415:intron 55.0%
GGTGGCAGTAGTAACAACGG+AGG + chr4.4:60371140-60371159 MS.gene63415:CDS 55.0%
GTGACATCGCTAACTGTCGC+TGG + chr4.4:60372271-60372290 MS.gene63415:CDS 55.0%
TCTCCAAATGGAGTCGCAGC+TGG + chr4.4:60373901-60373920 MS.gene63415:CDS 55.0%
! CGGAGGTGTAGGGATGATGA+TGG + chr4.4:60371157-60371176 MS.gene63415:CDS 55.0%
!! ATTGGTGTCGTGTCGGACAC+CGG + chr4.4:60371718-60371737 MS.gene63415:intron 55.0%
CCCCATGTGACAGCTATGGC+AGG - chr4.4:60373129-60373148 None:intergenic 60.0%
GGCCTAAGAGCAGAGAGTCG+TGG + chr4.4:60374101-60374120 MS.gene63415:CDS 60.0%
GTGTGGCGACTGAGAGCTTG+TGG - chr4.4:60374218-60374237 None:intergenic 60.0%
TGTGAGCGCCACATGCATCG+TGG + chr4.4:60372190-60372209 MS.gene63415:CDS 60.0%
AAGAAGGTGGACCCGGAGCC+AGG + chr4.4:60372100-60372119 MS.gene63415:CDS 65.0%
GGTTGCGGCCACGATGCATG+TGG - chr4.4:60372201-60372220 None:intergenic 65.0%
GCTGGTGGCAGCAGCAGAGC+TGG + chr4.4:60372289-60372308 MS.gene63415:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 60371125 60374330 60371125 ID=MS.gene63415
chr4.4 mRNA 60371125 60374330 60371125 ID=MS.gene63415.t1;Parent=MS.gene63415
chr4.4 exon 60371125 60371305 60371125 ID=MS.gene63415.t1.exon1;Parent=MS.gene63415.t1
chr4.4 CDS 60371125 60371305 60371125 ID=cds.MS.gene63415.t1;Parent=MS.gene63415.t1
chr4.4 exon 60372077 60372437 60372077 ID=MS.gene63415.t1.exon2;Parent=MS.gene63415.t1
chr4.4 CDS 60372077 60372437 60372077 ID=cds.MS.gene63415.t1;Parent=MS.gene63415.t1
chr4.4 exon 60373826 60374238 60373826 ID=MS.gene63415.t1.exon3;Parent=MS.gene63415.t1
chr4.4 CDS 60373826 60374238 60373826 ID=cds.MS.gene63415.t1;Parent=MS.gene63415.t1
chr4.4 exon 60374323 60374330 60374323 ID=MS.gene63415.t1.exon4;Parent=MS.gene63415.t1
chr4.4 CDS 60374323 60374330 60374323 ID=cds.MS.gene63415.t1;Parent=MS.gene63415.t1
Gene Sequence

>MS.gene63415

ATGAATAGCTCTGGTGGTGGCAGTAGTAACAACGGAGGTGTAGGGATGATGATGGGTTACAGTAAATCATCACCCTTCACAGTGTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTTAAATATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTTGTCCTTCCTATTCACTCCAGTTTTCACTCTCTTTCTTCTAATAACTTCTTTCACCACCCTATTCCTACCTGTAAGTAACTAACTAACTAACTTCTTTTTTTTCTTTTTTTGTTTAATTAATTGATTATTTCTTCAAAATGCTTTTAATTTGATGATTGTCTGTTACTAAAGTAGTTTCAACCCTAATAGCTGCATATTTGATGATATCATTTACCCCCTTTGTTCCTGAGAGATCCAATCAAGTTATTACTAAAGATAGTTAGTTGATTCTTGGCTTGTTACTTAGAAGGGTATCATTTTTCCTAATTTTTTTATTTATTTATAACTGTCTCCCTTTATTGTCTGCACACATATGAATACATACATGACACTGACACGTCGACACAGATAATAATTTAAGAAAATTGAAGTAATTGAATGTAACTACTTGTATTGGTGTCGTGTCGGACACCGGACATGCCTTTAATCCAAAGTGTCGGCGCAAAACATTCTAAATCAGTAATACATTTGCCATCATTTCCCACTATCTGTCAATTTGGATTTTCTTTTCCATTTTTGAGAGAGACATAGATTTGGAAGTACTTATTGCTTTGCTTTCCTTCTCTTCAGCTCATTATACTTGTAACTAAATCTTGCTAGTGTTTGGCTGCATTATTCAATTATGGAAATTTTTACCTATAGCTTTTACTGCTTACAAATGAATGTTTCTTATTGATTGCGGTCTAGAGTGTGTCTGAAATGTTGGTGATAAAGTAATTGTGTAAACCTAACTGTGCTTGTAAATTTACAGTGAGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGAAGATGTAGAAGGACTGATGGAAAAAAGTGGAGGTGCTCAAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCATCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCGTCATCCACTGTGACATCGCTAACTGTCGCTGGTGGCAGCAGCAGAGCTGGTAACTTCCAGAACATTCCCACAACAAATGCATTTGGTAGTGTTCAAAATACTACAGGTTCTGGAACTGACCGTGCCGATTATCATCTTGATACCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATTGAAATCCTTATTATGTATATCATTTCACACTTGTTGATTGCTTTAAATTGGAAAATACTTTTAACCGAAAAGAATGGAACAAAAAATTTATCATATTGTTTGTGCTCTTGAGAAGTAATATTTTTATCTGAATTTGCTGCTGTTATTATTATTTCCATTATTGTGCAGTTGAGTTTTTGTTGTGTACATAATACTATGTTTATAACATGGATTTCTAATTTTCCACAGAGATTCACAAGCATTAGAACCACATCTTTGTGTAAATTGTTGAAAGAATGACAAGAGTTATTGGTTACTTTGCTTTGGGTCACCTTCTTACAATTTTCTTTTCAATATTGAAAAAGGGAATTGTAGTTTTTTCACAATATCCTCAACTGTTATTTTGTCTATGTCTGCTTGCTAGTTCTTGTTCTCTATATTTGTGTTGGGTGATACTCTGACACGAGGGCTAGGTATTAGATACCGGAATCAGTAGATCTCCATGAATCACCCAAACCACTTTTCGAATGACATTTTGACAAAATTGCGAGGGAGAAAGACGGTGTTTTAATTGCTCTCTGATTTTCTTTTCCATGCATTTATTTATTCCTAGAATATGAAGTTTATATTAAAACAACTTTTTTGGCATAAACAATAAACAATGAGAAACATTTTAGCATGTTAATATGTGGTCCTTCTGTCAGCCTGCCATAGCTGTCACATGGGGATAACGAGCAAGGTAGGTACTCTGAATTGAATGTCTTCTAATTTTTACTTTCACTAGATGATGCATTTCCTTCATTAATTTCCGACAAAAGGGTGTTTGACGCTTTCTCTTCATACACCTTCAAATCTAGCTGCAAATTTTATTCTTTTCGTGGTAGCCATATCATGTTGCTCTCTTTGAAATTGTAAGTTGCAGACTATAAGACAAAAATATTTGTTGTTTTCTTGATTTTATTTATACGACATCACAGTTAAATATCAAATTGTTCATAGATATTTAGTTTTGATATTTAATTTTGACGTCAGACAAATTTATTTGGGAGACTGCTGTCACTGACACTGATTGTATTCAAAGATATGATTGCACTCTTCAAAGCTTGAACTTCTGATGGTTTTCAGAACCTTTGTTTTTTCATTTAGTTTCCTTTCAATCAATTTAATGGGACCTTGATTCGGCAAGTTCATCATATGGTGACATATTTCATTAAGTTTTGTTTCAACCATCTTCATGATTTTTCGTTTGTAGTATCGAACATGGCTAATAATGCATAATGTTCTATGATTGTTTCTTGTATGATTAAATATGACTGGAAGCAACAAATTATAAGCGAAAAGGTGTCTTTTTTATACTACATGACGTGGCCAACATCGTTATTCGTCGCCCGTTTAATTGAACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTGCAGAAGCTTCAGGAGGAGACAACAAGGGTCTCCAAATGGAGTCGCAGCTGGAAAACACATGGCCTTTGATGTCAACTAGAGTTGCCTCTTTTTCTGCATCAAAATCAAGCTGTAATAATTCCATGTTGCAAAGTGATTATCCCCAACATTCATTTTTATCTAGTGAATATGGATCTGGAGAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGACCCTTTTTCAGCGAATGGCCTAAGAGCAGAGAGTCGTGGTCTGGTTTGGAAGATGAGAGATCCAACCAAACAGCATTCTCCACAACTCAACTTTCAATATCCATTCCTATGTCATCGTCTGACTTCTCTGCCACAAGCTCTCAGTCGCCACACGGTGAGATATATTTAAGTTCGGTAAAGTTTCAGATTATATGCAATAAACATCTATTAACTGAATCCCATAATTATATCGCTGCAGATAACTAG

Protein sequence

>MS.gene63415.t1

MNSSGGGSSNNGGVGMMMGYSKSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIHSMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMAQSSSTVTSLTVAGGSSRAGNFQNIPTTNAFGSVQNTTGSGTDRADYHLDTIPYGIPSKEYRYLQGLKSEGGEHSFFAEASGGDNKGLQMESQLENTWPLMSTRVASFSASKSSCNNSMLQSDYPQHSFLSSEYGSGEAVKEEGQPLRPFFSEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSSQSPHDN