Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63536.t1 | XP_024633556.1 | 94 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 3.80E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63536.t1 | Q9LTT3 | 50.0 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 1.2e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63536.t1 | I3SK14 | 94.0 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 4.6e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63536.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63536.t1 | MTR_3g009890 | 94.416 | 197 | 11 | 0 | 17 | 213 | 26 | 222 | 1.03e-134 | 380 |
| MS.gene63536.t1 | MTR_3g114920 | 45.000 | 220 | 113 | 3 | 1 | 215 | 1 | 217 | 1.79e-54 | 177 |
| MS.gene63536.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.16e-52 | 171 |
| MS.gene63536.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.27e-51 | 171 |
| MS.gene63536.t1 | MTR_7g005970 | 45.455 | 209 | 101 | 4 | 6 | 201 | 9 | 217 | 5.95e-50 | 169 |
| MS.gene63536.t1 | MTR_2g084375 | 83.871 | 62 | 10 | 0 | 159 | 220 | 201 | 262 | 1.60e-25 | 100 |
| MS.gene63536.t1 | MTR_2g084410 | 83.871 | 62 | 10 | 0 | 159 | 220 | 215 | 276 | 1.69e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63536.t1 | AT3G13350 | 50.000 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 3.01e-52 | 171 |
| MS.gene63536.t1 | AT1G55650 | 46.277 | 188 | 81 | 4 | 26 | 209 | 29 | 200 | 2.60e-51 | 169 |
| MS.gene63536.t1 | AT1G04880 | 44.103 | 195 | 101 | 3 | 16 | 202 | 14 | 208 | 9.09e-48 | 163 |
| MS.gene63536.t1 | AT1G76110 | 47.027 | 185 | 91 | 4 | 21 | 201 | 28 | 209 | 1.90e-45 | 154 |
Find 62 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTGATGCTAACCTCTTC+TGG | 0.176030 | 3.3:-5070489 | MS.gene63536:CDS |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3.3:-5067602 | MS.gene63536:CDS |
| GTTCAGTCTCACGCGGATTT+TGG | 0.242316 | 3.3:+5070557 | None:intergenic |
| TGTTTCAAGCAATGCATCTA+AGG | 0.259440 | 3.3:-5067780 | MS.gene63536:CDS |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3.3:-5069056 | MS.gene63536:CDS |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3.3:-5069354 | MS.gene63536:CDS |
| TGTGTAGGATTCCTACTATA+GGG | 0.338046 | 3.3:-5069665 | MS.gene63536:intron |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.354657 | 3.3:+5067902 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3.3:-5067601 | MS.gene63536:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3.3:-5069296 | MS.gene63536:CDS |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3.3:+5069090 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3.3:+5069043 | None:intergenic |
| TTGTGTAGGATTCCTACTAT+AGG | 0.432421 | 3.3:-5069666 | MS.gene63536:intron |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3.3:+5069264 | None:intergenic |
| TCGTGATGCTAACCTCTTCT+GGG | 0.445073 | 3.3:-5070488 | MS.gene63536:CDS |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3.3:+5069297 | None:intergenic |
| GAGTAGAGAGCGGTTGGAGG+AGG | 0.454942 | 3.3:+5070520 | None:intergenic |
| TCTAAGGGTTCTTCTATTGA+AGG | 0.459768 | 3.3:-5067764 | MS.gene63536:intron |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3.3:-5067860 | MS.gene63536:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3.3:-5067834 | MS.gene63536:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3.3:+5069075 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3.3:-5069601 | MS.gene63536:intron |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3.3:+5069205 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3.3:-5069121 | MS.gene63536:intron |
| CATTGCTTGAAACATGATAC+AGG | 0.516873 | 3.3:+5067789 | None:intergenic |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3.3:-5069055 | MS.gene63536:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3.3:+5067608 | None:intergenic |
| AGGTCAGAGTAGAGAGCGGT+TGG | 0.533695 | 3.3:+5070514 | None:intergenic |
| TCAGAGTAGAGAGCGGTTGG+AGG | 0.537076 | 3.3:+5070517 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3.3:-5067589 | MS.gene63536:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3.3:-5069089 | MS.gene63536:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3.3:-5067843 | MS.gene63536:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3.3:-5069214 | MS.gene63536:intron |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3.3:-5067899 | MS.gene63536:CDS |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3.3:-5067610 | MS.gene63536:CDS |
| GAAGAACCAAGTGTCTGTGC+TGG | 0.560864 | 3.3:+5067893 | None:intergenic |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3.3:+5069305 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.562980 | 3.3:+5069628 | None:intergenic |
| GTTTCAAGCAATGCATCTAA+GGG | 0.563003 | 3.3:-5067779 | MS.gene63536:CDS |
| GTGTAGGATTCCTACTATAG+GGG | 0.574437 | 3.3:-5069664 | MS.gene63536:intron |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3.3:-5069615 | MS.gene63536:CDS |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3.3:+5069204 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3.3:-5067815 | MS.gene63536:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3.3:-5067592 | MS.gene63536:CDS |
| GAGCGGTTGGAGGAGGACAA+AGG | 0.594063 | 3.3:+5070527 | None:intergenic |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3.3:+5069208 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3.3:-5069350 | MS.gene63536:CDS |
| AAGAGGTGATGCAGGTCTAG+TGG | 0.600590 | 3.3:+5069636 | None:intergenic |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3.3:-5067884 | MS.gene63536:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3.3:-5069347 | MS.gene63536:CDS |
| AGAGGTTAGCATCACGAACA+AGG | 0.617590 | 3.3:+5070494 | None:intergenic |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3.3:+5069209 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3.3:-5067833 | MS.gene63536:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3.3:+5067816 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3.3:-5069085 | MS.gene63536:CDS |
| TGTAGGATTCCTACTATAGG+GGG | 0.629514 | 3.3:-5069663 | MS.gene63536:intron |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3.3:-5067857 | MS.gene63536:CDS |
| AACAAGGTCAGAGTAGAGAG+CGG | 0.693390 | 3.3:+5070510 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3.3:+5069619 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3.3:-5067840 | MS.gene63536:CDS |
| TTTGTGAGTTCAGTCTCACG+CGG | 0.743764 | 3.3:+5070550 | None:intergenic |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3.3:-5069612 | MS.gene63536:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3.3:5067992-5068011 | MS.gene63536:intron | 10.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3.3:5068784-5068803 | None:intergenic | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3.3:5069753-5069772 | MS.gene63536:intron | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3.3:5068788-5068807 | MS.gene63536:intron | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3.3:5068154-5068173 | MS.gene63536:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3.3:5068006-5068025 | MS.gene63536:intron | 15.0% |
| !!! | TTTTTTTTTATCTCTTGTTA+CGG | - | chr3.3:5069657-5069676 | MS.gene63536:CDS | 15.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3.3:5068333-5068352 | MS.gene63536:intron | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+AGG | + | chr3.3:5068199-5068218 | None:intergenic | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3.3:5069784-5069803 | None:intergenic | 20.0% |
| !! | TATGACAAAAGAAATATGAT+TGG | - | chr3.3:5068232-5068251 | MS.gene63536:intron | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+AGG | + | chr3.3:5068036-5068055 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3.3:5068996-5069015 | None:intergenic | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3.3:5068995-5069014 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3.3:5069350-5069369 | MS.gene63536:CDS | 20.0% |
| !!! | TTTTTTTTATCTCTTGTTAC+GGG | - | chr3.3:5069658-5069677 | MS.gene63536:CDS | 20.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3.3:5068471-5068490 | None:intergenic | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3.3:5070302-5070321 | MS.gene63536:intron | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3.3:5069746-5069765 | None:intergenic | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3.3:5068470-5068489 | None:intergenic | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3.3:5070207-5070226 | MS.gene63536:intron | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3.3:5068059-5068078 | MS.gene63536:intron | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3.3:5068654-5068673 | None:intergenic | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3.3:5067836-5067855 | None:intergenic | 25.0% |
| ! | GTCAATTTCATTTGTATGAT+GGG | - | chr3.3:5067886-5067905 | MS.gene63536:CDS | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3.3:5068591-5068610 | None:intergenic | 25.0% |
| !! | ATATTTTTCTGTGATGTATG+TGG | - | chr3.3:5069592-5069611 | MS.gene63536:intron | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3.3:5068690-5068709 | MS.gene63536:intron | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3.3:5067858-5067877 | MS.gene63536:CDS | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3.3:5069702-5069721 | MS.gene63536:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3.3:5067859-5067878 | MS.gene63536:CDS | 25.0% |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3.3:5068989-5069008 | None:intergenic | 30.0% | |
| AAACCTTTACCACAGATAAA+TGG | + | chr3.3:5070219-5070238 | None:intergenic | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3.3:5068812-5068831 | MS.gene63536:intron | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3.3:5068808-5068827 | MS.gene63536:intron | 30.0% | |
| ATGTATAACCTAACTCATGA+TGG | + | chr3.3:5069516-5069535 | None:intergenic | 30.0% | |
| ATTGACATGAAATTTGATGG+CGG | - | chr3.3:5070305-5070324 | MS.gene63536:intron | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3.3:5069219-5069238 | None:intergenic | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3.3:5069795-5069814 | MS.gene63536:intron | 30.0% | |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3.3:5070561-5070580 | MS.gene63536:CDS | 30.0% | |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3.3:5069495-5069514 | None:intergenic | 30.0% | |
| GGTCAATTTCATTTGTATGA+TGG | - | chr3.3:5067885-5067904 | MS.gene63536:CDS | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3.3:5070470-5070489 | MS.gene63536:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3.3:5068300-5068319 | None:intergenic | 30.0% | |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3.3:5068272-5068291 | MS.gene63536:intron | 30.0% | |
| TGTATGTGGAAATAGAAGTA+AGG | - | chr3.3:5069606-5069625 | MS.gene63536:CDS | 30.0% | |
| TTTCCATTTATCTGTGGTAA+AGG | - | chr3.3:5070213-5070232 | MS.gene63536:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3.3:5070481-5070500 | None:intergenic | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3.3:5068248-5068267 | MS.gene63536:intron | 30.0% |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3.3:5070045-5070064 | None:intergenic | 30.0% |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3.3:5069357-5069376 | MS.gene63536:intron | 30.0% |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3.3:5068074-5068093 | MS.gene63536:intron | 30.0% |
| AACAAGCTGTGGTACAAAAA+GGG | + | chr3.3:5067781-5067800 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3.3:5070177-5070196 | MS.gene63536:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3.3:5069231-5069250 | MS.gene63536:CDS | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3.3:5069229-5069248 | MS.gene63536:CDS | 35.0% | |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3.3:5070177-5070196 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3.3:5068292-5068311 | MS.gene63536:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3.3:5069107-5069126 | MS.gene63536:CDS | 35.0% | |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3.3:5069427-5069446 | None:intergenic | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3.3:5069928-5069947 | MS.gene63536:intron | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3.3:5069073-5069092 | MS.gene63536:CDS | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3.3:5069230-5069249 | MS.gene63536:CDS | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3.3:5068628-5068647 | None:intergenic | 35.0% | |
| CATTGCTTGAAACATGATAC+AGG | + | chr3.3:5070376-5070395 | None:intergenic | 35.0% | |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3.3:5068088-5068107 | None:intergenic | 35.0% | |
| CTATACATCCATCATGAGTT+AGG | - | chr3.3:5069505-5069524 | MS.gene63536:intron | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3.3:5068489-5068508 | None:intergenic | 35.0% | |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3.3:5070560-5070579 | MS.gene63536:CDS | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3.3:5069029-5069048 | None:intergenic | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3.3:5068901-5068920 | None:intergenic | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3.3:5070383-5070402 | MS.gene63536:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3.3:5070026-5070045 | None:intergenic | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3.3:5069106-5069125 | MS.gene63536:CDS | 35.0% | |
| TCCACTTACCAACATAGATT+AGG | + | chr3.3:5070188-5070207 | None:intergenic | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3.3:5070398-5070417 | MS.gene63536:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3.3:5068497-5068516 | MS.gene63536:intron | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3.3:5070382-5070401 | MS.gene63536:intron | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3.3:5068496-5068515 | MS.gene63536:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3.3:5069929-5069948 | MS.gene63536:intron | 35.0% | |
| ! | ACATGTGATTTGTGATGGAA+TGG | - | chr3.3:5069322-5069341 | MS.gene63536:CDS | 35.0% |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3.3:5067864-5067883 | MS.gene63536:CDS | 35.0% |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3.3:5069892-5069911 | None:intergenic | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3.3:5067689-5067708 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3.3:5067705-5067724 | MS.gene63536:intron | 35.0% |
| ! | GGTACGCTCATTTAAAACAA+CGG | - | chr3.3:5070419-5070438 | MS.gene63536:intron | 35.0% |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3.3:5070184-5070203 | MS.gene63536:intron | 35.0% |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3.3:5070510-5070529 | MS.gene63536:CDS | 35.0% |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3.3:5070037-5070056 | None:intergenic | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3.3:5069408-5069427 | None:intergenic | 35.0% |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3.3:5070319-5070338 | MS.gene63536:intron | 35.0% |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3.3:5068969-5068988 | None:intergenic | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3.3:5070328-5070347 | MS.gene63536:intron | 40.0% | |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3.3:5069887-5069906 | MS.gene63536:intron | 40.0% | |
| CATAACAAGCGCATCATTCA+TGG | - | chr3.3:5068866-5068885 | MS.gene63536:intron | 40.0% | |
| GAACAAGCTGTGGTACAAAA+AGG | + | chr3.3:5067782-5067801 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3.3:5069426-5069445 | MS.gene63536:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3.3:5068490-5068509 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3.3:5068313-5068332 | MS.gene63536:intron | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3.3:5068498-5068517 | MS.gene63536:intron | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3.3:5069418-5069437 | MS.gene63536:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3.3:5070329-5070348 | MS.gene63536:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3.3:5069275-5069294 | None:intergenic | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3.3:5069426-5069445 | None:intergenic | 40.0% | |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3.3:5068815-5068834 | MS.gene63536:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3.3:5068499-5068518 | MS.gene63536:intron | 40.0% | |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3.3:5069268-5069287 | MS.gene63536:CDS | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3.3:5069930-5069949 | MS.gene63536:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3.3:5070557-5070576 | None:intergenic | 40.0% | |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3.3:5068547-5068566 | MS.gene63536:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3.3:5069958-5069977 | MS.gene63536:intron | 40.0% | |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3.3:5068482-5068501 | MS.gene63536:intron | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3.3:5069887-5069906 | None:intergenic | 40.0% |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3.3:5068387-5068406 | None:intergenic | 40.0% |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3.3:5068561-5068580 | MS.gene63536:intron | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3.3:5068868-5068887 | None:intergenic | 40.0% |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3.3:5068546-5068565 | None:intergenic | 40.0% |
| ! | GTGATTTGTGATGGAATGGT+TGG | - | chr3.3:5069326-5069345 | MS.gene63536:CDS | 40.0% |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3.3:5068860-5068879 | None:intergenic | 40.0% |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3.3:5069075-5069094 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3.3:5069122-5069141 | None:intergenic | 40.0% |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3.3:5067655-5067674 | None:intergenic | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3.3:5069939-5069958 | None:intergenic | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3.3:5069940-5069959 | MS.gene63536:intron | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3.3:5067671-5067690 | None:intergenic | 45.0% | |
| AGCTTCACAACCAATACGGA+CGG | - | chr3.3:5069077-5069096 | MS.gene63536:CDS | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3.3:5070263-5070282 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3.3:5070263-5070282 | MS.gene63536:intron | 45.0% | |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3.3:5069864-5069883 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3.3:5069861-5069880 | MS.gene63536:intron | 45.0% | |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3.3:5070475-5070494 | MS.gene63536:CDS | 45.0% | |
| CTAGATCGATGAACAAGCTG+TGG | + | chr3.3:5067792-5067811 | None:intergenic | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3.3:5070570-5070589 | MS.gene63536:CDS | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3.3:5068550-5068569 | MS.gene63536:intron | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3.3:5069939-5069958 | MS.gene63536:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3.3:5067674-5067693 | MS.gene63536:intron | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3.3:5067673-5067692 | MS.gene63536:intron | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3.3:5067615-5067634 | None:intergenic | 45.0% | |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3.3:5069050-5069069 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3.3:5069043-5069062 | None:intergenic | 45.0% |
| ! | CGCTGACATGTGATTTGTGA+TGG | - | chr3.3:5069317-5069336 | MS.gene63536:CDS | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3.3:5069041-5069060 | MS.gene63536:intron | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3.3:5068961-5068980 | None:intergenic | 45.0% |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3.3:5070322-5070341 | MS.gene63536:intron | 45.0% |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3.3:5068960-5068979 | None:intergenic | 45.0% |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3.3:5068529-5068548 | None:intergenic | 50.0% | |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3.3:5068511-5068530 | None:intergenic | 50.0% | |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3.3:5070542-5070561 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3.3:5068537-5068556 | None:intergenic | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3.3:5070349-5070368 | None:intergenic | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3.3:5070272-5070291 | None:intergenic | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3.3:5070573-5070592 | MS.gene63536:CDS | 50.0% | |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3.3:5069951-5069970 | MS.gene63536:intron | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3.3:5070552-5070571 | MS.gene63536:CDS | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3.3:5070543-5070562 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3.3:5070278-5070297 | MS.gene63536:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3.3:5070531-5070550 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3.3:5070531-5070550 | MS.gene63536:CDS | 50.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3.3:5067608-5067627 | None:intergenic | 50.0% |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3.3:5068956-5068975 | None:intergenic | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3.3:5070347-5070366 | MS.gene63536:intron | 50.0% |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3.3:5067651-5067670 | None:intergenic | 55.0% | |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3.3:5069090-5069109 | None:intergenic | 55.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3.3:5067648-5067667 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3.3:5070539-5070558 | MS.gene63536:CDS | 55.0% |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3.3:5068957-5068976 | None:intergenic | 55.0% |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3.3:5068948-5068967 | MS.gene63536:intron | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3.3:5067638-5067657 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3.3:5067645-5067664 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 5067582 | 5070602 | 5067582 | ID=MS.gene63536 |
| chr3.3 | mRNA | 5067582 | 5070602 | 5067582 | ID=MS.gene63536.t1;Parent=MS.gene63536 |
| chr3.3 | exon | 5070445 | 5070602 | 5070445 | ID=MS.gene63536.t1.exon1;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5070445 | 5070602 | 5070445 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| chr3.3 | exon | 5069602 | 5069680 | 5069602 | ID=MS.gene63536.t1.exon2;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5069602 | 5069680 | 5069602 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| chr3.3 | exon | 5069215 | 5069374 | 5069215 | ID=MS.gene63536.t1.exon3;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5069215 | 5069374 | 5069215 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| chr3.3 | exon | 5069056 | 5069133 | 5069056 | ID=MS.gene63536.t1.exon4;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5069056 | 5069133 | 5069056 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| chr3.3 | exon | 5067765 | 5067929 | 5067765 | ID=MS.gene63536.t1.exon5;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5067765 | 5067929 | 5067765 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| chr3.3 | exon | 5067582 | 5067631 | 5067582 | ID=MS.gene63536.t1.exon6;Parent=MS.gene63536.t1 |
| chr3.3 | CDS | 5067582 | 5067631 | 5067582 | ID=cds.MS.gene63536.t1;Parent=MS.gene63536.t1 |
| Gene Sequence |
| Protein sequence |
