Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63669.t1 | XP_013458769.1 | 93 | 229 | 15 | 1 | 1 | 228 | 1 | 229 | 1.90E-115 | 425.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63669.t1 | Q9SZL8 | 52.3 | 107 | 49 | 1 | 48 | 152 | 72 | 178 | 4.0e-26 | 119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63669.t1 | A0A072UTY6 | 93.0 | 229 | 15 | 1 | 1 | 228 | 1 | 229 | 1.3e-115 | 425.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63669.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63669.t1 | MTR_3g006370 | 93.013 | 229 | 15 | 1 | 1 | 228 | 1 | 229 | 2.57e-157 | 435 |
| MS.gene63669.t1 | MTR_2g098920 | 40.761 | 184 | 100 | 3 | 45 | 223 | 76 | 255 | 3.90e-38 | 133 |
| MS.gene63669.t1 | MTR_4g067290 | 42.775 | 173 | 95 | 2 | 45 | 215 | 52 | 222 | 6.68e-38 | 132 |
| MS.gene63669.t1 | MTR_4g067290 | 42.697 | 178 | 90 | 4 | 45 | 215 | 52 | 224 | 6.82e-38 | 132 |
| MS.gene63669.t1 | MTR_4g067290 | 42.857 | 175 | 92 | 3 | 45 | 215 | 70 | 240 | 8.37e-38 | 132 |
| MS.gene63669.t1 | MTR_4g067290 | 42.857 | 175 | 92 | 3 | 45 | 215 | 72 | 242 | 9.39e-38 | 132 |
| MS.gene63669.t1 | MTR_4g067290 | 42.697 | 178 | 90 | 4 | 45 | 215 | 72 | 244 | 9.66e-38 | 132 |
| MS.gene63669.t1 | MTR_4g067290 | 42.697 | 178 | 90 | 4 | 45 | 215 | 112 | 284 | 3.48e-37 | 132 |
| MS.gene63669.t1 | MTR_2g098880 | 36.269 | 193 | 103 | 5 | 43 | 219 | 55 | 243 | 6.05e-34 | 122 |
| MS.gene63669.t1 | MTR_2g098880 | 36.269 | 193 | 103 | 5 | 43 | 219 | 67 | 255 | 8.19e-34 | 122 |
| MS.gene63669.t1 | MTR_2g070590 | 37.736 | 106 | 64 | 2 | 49 | 153 | 17 | 121 | 2.89e-13 | 64.7 |
| MS.gene63669.t1 | MTR_0402s0040 | 37.500 | 104 | 63 | 2 | 49 | 151 | 26 | 128 | 3.60e-12 | 65.5 |
| MS.gene63669.t1 | MTR_1g057920 | 39.535 | 86 | 51 | 1 | 49 | 134 | 34 | 118 | 2.98e-11 | 59.3 |
| MS.gene63669.t1 | MTR_5g015480 | 38.095 | 105 | 63 | 2 | 49 | 152 | 56 | 159 | 4.47e-11 | 61.2 |
| MS.gene63669.t1 | MTR_6g017200 | 37.113 | 97 | 59 | 2 | 49 | 144 | 58 | 153 | 8.44e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63669.t1 | AT2G43280 | 72.131 | 183 | 50 | 1 | 43 | 225 | 17 | 198 | 4.59e-98 | 284 |
| MS.gene63669.t1 | AT2G43280 | 73.006 | 163 | 44 | 0 | 63 | 225 | 1 | 163 | 3.13e-90 | 263 |
| MS.gene63669.t1 | AT3G07500 | 49.721 | 179 | 83 | 3 | 48 | 220 | 32 | 209 | 4.34e-51 | 165 |
| MS.gene63669.t1 | AT4G12850 | 41.989 | 181 | 93 | 2 | 43 | 219 | 5 | 177 | 2.43e-44 | 147 |
| MS.gene63669.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 48 | 219 | 69 | 241 | 2.82e-41 | 141 |
| MS.gene63669.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 48 | 219 | 69 | 241 | 2.82e-41 | 141 |
| MS.gene63669.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 48 | 219 | 81 | 253 | 4.52e-41 | 141 |
| MS.gene63669.t1 | AT4G12850 | 49.541 | 109 | 51 | 1 | 43 | 151 | 5 | 109 | 4.54e-30 | 109 |
| MS.gene63669.t1 | AT4G12850 | 48.673 | 113 | 46 | 2 | 43 | 151 | 5 | 109 | 5.40e-30 | 108 |
| MS.gene63669.t1 | AT4G38180 | 52.336 | 107 | 49 | 1 | 48 | 152 | 72 | 178 | 1.34e-25 | 104 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.37e-18 | 84.0 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.37e-18 | 84.0 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.39e-18 | 84.0 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.39e-18 | 84.0 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.39e-18 | 84.0 |
| MS.gene63669.t1 | AT2G32250 | 36.232 | 138 | 78 | 3 | 45 | 182 | 34 | 161 | 2.52e-18 | 83.6 |
| MS.gene63669.t1 | AT2G32250 | 36.154 | 130 | 73 | 3 | 53 | 182 | 1 | 120 | 4.20e-17 | 80.1 |
| MS.gene63669.t1 | AT2G32250 | 36.154 | 130 | 73 | 3 | 53 | 182 | 1 | 120 | 4.24e-17 | 80.1 |
| MS.gene63669.t1 | AT2G27110 | 35.897 | 156 | 80 | 5 | 1 | 154 | 1 | 138 | 3.50e-16 | 77.4 |
| MS.gene63669.t1 | AT2G27110 | 35.897 | 156 | 80 | 5 | 1 | 154 | 1 | 138 | 3.50e-16 | 77.4 |
| MS.gene63669.t1 | AT4G15090 | 35.593 | 118 | 74 | 2 | 35 | 152 | 38 | 153 | 3.62e-16 | 77.4 |
| MS.gene63669.t1 | AT4G15090 | 35.593 | 118 | 74 | 2 | 35 | 152 | 38 | 153 | 3.62e-16 | 77.4 |
| MS.gene63669.t1 | AT4G15090 | 35.593 | 118 | 74 | 2 | 35 | 152 | 38 | 153 | 3.62e-16 | 77.4 |
| MS.gene63669.t1 | AT4G15090 | 35.593 | 118 | 74 | 2 | 35 | 152 | 38 | 153 | 3.62e-16 | 77.4 |
| MS.gene63669.t1 | AT4G15090 | 35.593 | 118 | 74 | 2 | 35 | 152 | 38 | 153 | 3.62e-16 | 77.4 |
| MS.gene63669.t1 | AT3G06250 | 41.346 | 104 | 47 | 2 | 48 | 151 | 189 | 278 | 4.21e-16 | 77.4 |
| MS.gene63669.t1 | AT3G06250 | 35.088 | 114 | 60 | 1 | 48 | 161 | 27 | 126 | 2.21e-15 | 75.1 |
| MS.gene63669.t1 | AT3G06250 | 41.346 | 104 | 47 | 2 | 48 | 151 | 189 | 278 | 4.21e-16 | 77.4 |
| MS.gene63669.t1 | AT3G06250 | 35.088 | 114 | 60 | 1 | 48 | 161 | 27 | 126 | 2.21e-15 | 75.1 |
| MS.gene63669.t1 | AT3G06250 | 41.346 | 104 | 47 | 2 | 48 | 151 | 189 | 278 | 4.21e-16 | 77.4 |
| MS.gene63669.t1 | AT3G06250 | 35.088 | 114 | 60 | 1 | 48 | 161 | 27 | 126 | 2.21e-15 | 75.1 |
| MS.gene63669.t1 | AT5G18960 | 40.385 | 104 | 48 | 2 | 48 | 151 | 210 | 299 | 1.31e-15 | 75.9 |
| MS.gene63669.t1 | AT5G18960 | 33.600 | 125 | 62 | 2 | 48 | 165 | 42 | 152 | 1.51e-15 | 75.5 |
| MS.gene63669.t1 | AT5G18960 | 40.385 | 104 | 48 | 2 | 48 | 151 | 210 | 299 | 1.31e-15 | 75.9 |
| MS.gene63669.t1 | AT5G18960 | 33.600 | 125 | 62 | 2 | 48 | 165 | 42 | 152 | 1.51e-15 | 75.5 |
| MS.gene63669.t1 | AT3G22170 | 33.333 | 126 | 72 | 2 | 48 | 161 | 69 | 194 | 5.01e-14 | 71.2 |
| MS.gene63669.t1 | AT3G22170 | 33.333 | 126 | 72 | 2 | 48 | 161 | 69 | 194 | 5.01e-14 | 71.2 |
| MS.gene63669.t1 | AT1G76320 | 37.736 | 106 | 60 | 3 | 53 | 158 | 1 | 100 | 1.53e-13 | 69.7 |
| MS.gene63669.t1 | AT1G76320 | 37.736 | 106 | 60 | 3 | 53 | 158 | 1 | 100 | 1.57e-13 | 69.7 |
| MS.gene63669.t1 | AT1G76320 | 37.736 | 106 | 60 | 3 | 53 | 158 | 1 | 100 | 1.62e-13 | 69.7 |
| MS.gene63669.t1 | AT1G76320 | 37.736 | 106 | 60 | 3 | 53 | 158 | 1 | 100 | 1.62e-13 | 69.7 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 23 | 137 | 7.88e-13 | 67.8 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 23 | 137 | 7.88e-13 | 67.8 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 23 | 137 | 8.65e-13 | 67.4 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 37 | 151 | 8.94e-13 | 67.4 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 23 | 137 | 9.22e-13 | 67.4 |
| MS.gene63669.t1 | AT4G19990 | 32.479 | 117 | 63 | 2 | 51 | 153 | 23 | 137 | 9.22e-13 | 67.4 |
Find 61 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTGGGGATGGTAATT+TGG | 0.193398 | 3.3:+2060982 | MS.gene63669:CDS |
| AGTGACGGGACGGAAGTTTC+TGG | 0.271999 | 3.3:+2060968 | MS.gene63669:CDS |
| GTTTCTGGGGATGGTAATTT+GGG | 0.272995 | 3.3:+2060983 | MS.gene63669:CDS |
| AGATCGGCAAAGAGTTATTC+TGG | 0.305107 | 3.3:+2061615 | MS.gene63669:CDS |
| AGTATGATCAGTCTGGAAAA+TGG | 0.314309 | 3.3:+2061925 | MS.gene63669:CDS |
| AGGATTCTCGCCCGCAGGTT+TGG | 0.338766 | 3.3:+2061798 | MS.gene63669:CDS |
| CCTTCCCTTGTGACGGCCCT+TGG | 0.345255 | 3.3:-2061879 | None:intergenic |
| CCGCAGGTTTGGATGTAATA+AGG | 0.351849 | 3.3:+2061809 | MS.gene63669:CDS |
| AGTTATTCTGGGAGAGAGTT+GGG | 0.357444 | 3.3:+2061627 | MS.gene63669:CDS |
| ATTATGGATTTACCGTTGTT+TGG | 0.367161 | 3.3:-2062010 | None:intergenic |
| GTCACTTCCATCAACTAATC+TGG | 0.397067 | 3.3:-2060951 | None:intergenic |
| ACGGCCCTTGGTTTACGAAC+TGG | 0.399474 | 3.3:-2061867 | None:intergenic |
| ACAAATTCCATGCCTTCATA+TGG | 0.406605 | 3.3:-2061678 | None:intergenic |
| GAGTTATGACCATGCTGTTA+AGG | 0.413521 | 3.3:+2061653 | MS.gene63669:CDS |
| GCCGATCTACACCCATCATT+CGG | 0.425751 | 3.3:-2061600 | None:intergenic |
| CTGGTGCAAAAGCTCTTCTA+TGG | 0.431453 | 3.3:-2062589 | None:intergenic |
| GTGACGGGACGGAAGTTTCT+GGG | 0.432296 | 3.3:+2060969 | MS.gene63669:CDS |
| ATGGATTCCAGATTAGTTGA+TGG | 0.443466 | 3.3:+2060944 | MS.gene63669:CDS |
| AAATATCTTAGCAGCATCTT+CGG | 0.446381 | 3.3:-2061703 | None:intergenic |
| GGTCATTGCGTCAGCATACA+AGG | 0.449713 | 3.3:+2061834 | MS.gene63669:CDS |
| GTATGATCAGTCTGGAAAAT+GGG | 0.452188 | 3.3:+2061926 | MS.gene63669:CDS |
| TCATGCGTGTGATGTCTTGT+CGG | 0.467046 | 3.3:+2061757 | MS.gene63669:CDS |
| CATATCAAGTATGATCAGTC+TGG | 0.475718 | 3.3:+2061918 | MS.gene63669:CDS |
| AGGAACTAACAGTAGAGCTT+CGG | 0.480103 | 3.3:+2062439 | MS.gene63669:CDS |
| GAGTTATTCTGGGAGAGAGT+TGG | 0.493345 | 3.3:+2061626 | MS.gene63669:CDS |
| GTCAGCATACAAGGGAAACT+TGG | 0.494015 | 3.3:+2061843 | MS.gene63669:CDS |
| ACATAATGCAGGGCTACGTC+TGG | 0.504943 | 3.3:-2062608 | None:intergenic |
| CATGACAAATCCTACATGTC+GGG | 0.519329 | 3.3:-2061739 | None:intergenic |
| ATGGAAGGATTCTCGCCCGC+AGG | 0.531144 | 3.3:+2061793 | MS.gene63669:CDS |
| GTGACAGTGGAACCGAATGA+TGG | 0.532788 | 3.3:+2061588 | MS.gene63669:intron |
| CGTCACAAGGGAAGGTTGCA+AGG | 0.544540 | 3.3:+2061887 | MS.gene63669:CDS |
| GATGAATATGCCCGACATGT+AGG | 0.545888 | 3.3:+2061729 | MS.gene63669:CDS |
| GATCGGCAAAGAGTTATTCT+GGG | 0.547471 | 3.3:+2061616 | MS.gene63669:CDS |
| ACCGAATGATGGGTGTAGAT+CGG | 0.551733 | 3.3:+2061599 | MS.gene63669:CDS |
| CTTGCAACCTTCCCTTGTGA+CGG | 0.555795 | 3.3:-2061886 | None:intergenic |
| GTAAACCAAGGGCCGTCACA+AGG | 0.559469 | 3.3:+2061874 | MS.gene63669:CDS |
| CCAAGGGCCGTCACAAGGGA+AGG | 0.568415 | 3.3:+2061879 | MS.gene63669:CDS |
| AGATTAGTTGATGGAAGTGA+CGG | 0.571217 | 3.3:+2060953 | MS.gene63669:CDS |
| CTTATTACATCCAAACCTGC+GGG | 0.573213 | 3.3:-2061808 | None:intergenic |
| GCTGTTAAGGAACCATATGA+AGG | 0.588056 | 3.3:+2061666 | MS.gene63669:CDS |
| TAAGGAACCATATGAAGGCA+TGG | 0.594188 | 3.3:+2061671 | MS.gene63669:CDS |
| GAAAGATCATAATCATCCAC+TGG | 0.595127 | 3.3:+2061965 | MS.gene63669:CDS |
| GCATGACAAATCCTACATGT+CGG | 0.599788 | 3.3:-2061740 | None:intergenic |
| GTTGTTTGGCGTGCTTCACG+TGG | 0.602469 | 3.3:-2061996 | None:intergenic |
| GGGACGGAAGTTTCTGGGGA+TGG | 0.603658 | 3.3:+2060974 | MS.gene63669:CDS |
| TAAACCAAGGGCCGTCACAA+GGG | 0.604624 | 3.3:+2061875 | MS.gene63669:CDS |
| TGTCGGCACTCAGAAAGAGA+TGG | 0.607052 | 3.3:+2061774 | MS.gene63669:CDS |
| CATATGGTTCCTTAACAGCA+TGG | 0.608918 | 3.3:-2061662 | None:intergenic |
| GATTAGTTGATGGAAGTGAC+GGG | 0.614392 | 3.3:+2060954 | MS.gene63669:CDS |
| TGACAGTGGAACCGAATGAT+GGG | 0.614797 | 3.3:+2061589 | MS.gene63669:intron |
| TTGGTCCAGTTCGTAAACCA+AGG | 0.623231 | 3.3:+2061862 | MS.gene63669:CDS |
| CAGGTTTGGATGTAATAAGG+AGG | 0.625678 | 3.3:+2061812 | MS.gene63669:CDS |
| CCTTATTACATCCAAACCTG+CGG | 0.631158 | 3.3:-2061809 | None:intergenic |
| TGACGGGACGGAAGTTTCTG+GGG | 0.641298 | 3.3:+2060970 | MS.gene63669:CDS |
| TGGTCCAGTTCGTAAACCAA+GGG | 0.644778 | 3.3:+2061863 | MS.gene63669:CDS |
| AGGTTTGGATGTAATAAGGA+GGG | 0.648013 | 3.3:+2061813 | MS.gene63669:CDS |
| ACGTGAAGCACGCCAAACAA+CGG | 0.653986 | 3.3:+2061998 | MS.gene63669:CDS |
| AGTTGATGGAAGTGACGGGA+CGG | 0.655681 | 3.3:+2060958 | MS.gene63669:CDS |
| GGCACTCAGAAAGAGATGGA+AGG | 0.664011 | 3.3:+2061778 | MS.gene63669:CDS |
| GTCATTGCGTCAGCATACAA+GGG | 0.665576 | 3.3:+2061835 | MS.gene63669:CDS |
| TCACGTGGAGAGACTACCAG+TGG | 0.673648 | 3.3:-2061981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATCAATTAAAAAATA+TGG | - | chr3.3:2062101-2062120 | None:intergenic | 10.0% |
| !! | ATTATATTATATAACATCTC+TGG | + | chr3.3:2062326-2062345 | MS.gene63669:intron | 15.0% |
| !!! | CGAAATTAATTTTACAATAT+AGG | - | chr3.3:2061285-2061304 | None:intergenic | 15.0% |
| !!! | CTTCATTTCTATATTTTTTT+TGG | + | chr3.3:2062180-2062199 | MS.gene63669:intron | 15.0% |
| !!! | GAAGATAATATTATTGTTTT+TGG | + | chr3.3:2062236-2062255 | MS.gene63669:intron | 15.0% |
| !!! | TGATTGTTTTAAATGAAAAA+TGG | - | chr3.3:2061487-2061506 | None:intergenic | 15.0% |
| !! | AAACGGTTAAATAAGAATTA+TGG | - | chr3.3:2062029-2062048 | None:intergenic | 20.0% |
| !! | TCAAAAGTTATATTATGAAC+AGG | - | chr3.3:2061122-2061141 | None:intergenic | 20.0% |
| ! | AAGAGTTTCAGATTTCTAAT+TGG | + | chr3.3:2061430-2061449 | MS.gene63669:intron | 25.0% |
| ! | ATATTATCTTCTTCTTACCA+AGG | - | chr3.3:2062227-2062246 | None:intergenic | 25.0% |
| ! | TGAGAAGGATAAAAAAATTC+AGG | + | chr3.3:2062419-2062438 | MS.gene63669:CDS | 25.0% |
| !! | AGTTTTCCAAAGATTGAAAA+CGG | - | chr3.3:2062046-2062065 | None:intergenic | 25.0% |
| !! | ATTTAACCGTTTTCAATCTT+TGG | + | chr3.3:2062037-2062056 | MS.gene63669:intron | 25.0% |
| !!! | GATAAATTATTTTGTGACAG+TGG | + | chr3.3:2061575-2061594 | MS.gene63669:intron | 25.0% |
| AAATATCTTAGCAGCATCTT+CGG | - | chr3.3:2061706-2061725 | None:intergenic | 30.0% | |
| ATTATGGATTTACCGTTGTT+TGG | - | chr3.3:2062013-2062032 | None:intergenic | 30.0% | |
| GAAAAATGGAGAAATAAGAG+AGG | - | chr3.3:2061473-2061492 | None:intergenic | 30.0% | |
| GTTATATTATGAACAGGATG+CGG | - | chr3.3:2061116-2061135 | None:intergenic | 30.0% | |
| TAGAGCTTCGGATTAAAAAA+GGG | + | chr3.3:2062451-2062470 | MS.gene63669:CDS | 30.0% | |
| TTATATTATGAACAGGATGC+GGG | - | chr3.3:2061115-2061134 | None:intergenic | 30.0% | |
| !!! | GTTTTTGTTTTAGGATGAGA+AGG | + | chr3.3:2062404-2062423 | MS.gene63669:intron | 30.0% |
| !!! | TGGTATTTTTAGAGAAACCT+GGG | - | chr3.3:2061233-2061252 | None:intergenic | 30.0% |
| !!! | TTCTGCGTTGTTTTTGTTTT+AGG | + | chr3.3:2062395-2062414 | MS.gene63669:intron | 30.0% |
| !!! | TTGGTATTTTTAGAGAAACC+TGG | - | chr3.3:2061234-2061253 | None:intergenic | 30.0% |
| AAACATGTGAAGTCTAGCTA+CGG | - | chr3.3:2061322-2061341 | None:intergenic | 35.0% | |
| AAAGATAAATCGAGGCTTAG+CGG | - | chr3.3:2061361-2061380 | None:intergenic | 35.0% | |
| ACAAATTCCATGCCTTCATA+TGG | - | chr3.3:2061681-2061700 | None:intergenic | 35.0% | |
| AGGCATGTATAGAAGAAAGA+AGG | + | chr3.3:2062135-2062154 | MS.gene63669:intron | 35.0% | |
| AGGTTTGGATGTAATAAGGA+GGG | + | chr3.3:2061813-2061832 | MS.gene63669:CDS | 35.0% | |
| AGTATGATCAGTCTGGAAAA+TGG | + | chr3.3:2061925-2061944 | MS.gene63669:CDS | 35.0% | |
| ATCTCAAGGAAGAATCTGTT+TGG | - | chr3.3:2061253-2061272 | None:intergenic | 35.0% | |
| ATTCTTCCTTGAGATTGCAA+TGG | + | chr3.3:2061258-2061277 | MS.gene63669:intron | 35.0% | |
| CATATCAAGTATGATCAGTC+TGG | + | chr3.3:2061918-2061937 | MS.gene63669:CDS | 35.0% | |
| CTCTTTGTGAGGAAAAGATT+TGG | + | chr3.3:2062289-2062308 | MS.gene63669:intron | 35.0% | |
| GAAAGATCATAATCATCCAC+TGG | + | chr3.3:2061965-2061984 | MS.gene63669:CDS | 35.0% | |
| GTAGAGCTTCGGATTAAAAA+AGG | + | chr3.3:2062450-2062469 | MS.gene63669:CDS | 35.0% | |
| GTATGATCAGTCTGGAAAAT+GGG | + | chr3.3:2061926-2061945 | MS.gene63669:CDS | 35.0% | |
| TAAAACGTTATATTGTGCCC+AGG | + | chr3.3:2062115-2062134 | MS.gene63669:intron | 35.0% | |
| TAAAACGTTGTATTGTGCCT+TGG | + | chr3.3:2062207-2062226 | MS.gene63669:intron | 35.0% | |
| TCAATGCCAAAGATAAATCG+AGG | - | chr3.3:2061369-2061388 | None:intergenic | 35.0% | |
| TCACAAAGAGGAGTTAAAAC+AGG | - | chr3.3:2062279-2062298 | None:intergenic | 35.0% | |
| TCTTTCTTCTATACATGCCT+GGG | - | chr3.3:2062135-2062154 | None:intergenic | 35.0% | |
| TTCTTTCTTCTATACATGCC+TGG | - | chr3.3:2062136-2062155 | None:intergenic | 35.0% | |
| ! | ATGGATTCCAGATTAGTTGA+TGG | + | chr3.3:2060944-2060963 | MS.gene63669:CDS | 35.0% |
| ! | CAAATCTTTTCCTCACAAAG+AGG | - | chr3.3:2062291-2062310 | None:intergenic | 35.0% |
| !! | AGATTAGTTGATGGAAGTGA+CGG | + | chr3.3:2060953-2060972 | MS.gene63669:CDS | 35.0% |
| !!! | TGTTTTAACTCCTCTTTGTG+AGG | + | chr3.3:2062278-2062297 | MS.gene63669:intron | 35.0% |
| AGATCGGCAAAGAGTTATTC+TGG | + | chr3.3:2061615-2061634 | MS.gene63669:CDS | 40.0% | |
| AGGAACTAACAGTAGAGCTT+CGG | + | chr3.3:2062439-2062458 | MS.gene63669:CDS | 40.0% | |
| ATAGGTCCATTGCAATCTCA+AGG | - | chr3.3:2061267-2061286 | None:intergenic | 40.0% | |
| CAGGTTTGGATGTAATAAGG+AGG | + | chr3.3:2061812-2061831 | MS.gene63669:CDS | 40.0% | |
| CATATGGTTCCTTAACAGCA+TGG | - | chr3.3:2061665-2061684 | None:intergenic | 40.0% | |
| CATGACAAATCCTACATGTC+GGG | - | chr3.3:2061742-2061761 | None:intergenic | 40.0% | |
| CCTTATTACATCCAAACCTG+CGG | - | chr3.3:2061812-2061831 | None:intergenic | 40.0% | |
| CTTATTACATCCAAACCTGC+GGG | - | chr3.3:2061811-2061830 | None:intergenic | 40.0% | |
| GAGTTATGACCATGCTGTTA+AGG | + | chr3.3:2061653-2061672 | MS.gene63669:CDS | 40.0% | |
| GATCGGCAAAGAGTTATTCT+GGG | + | chr3.3:2061616-2061635 | MS.gene63669:CDS | 40.0% | |
| GCATGACAAATCCTACATGT+CGG | - | chr3.3:2061743-2061762 | None:intergenic | 40.0% | |
| GCTAAGCCTCGATTTATCTT+TGG | + | chr3.3:2061360-2061379 | MS.gene63669:intron | 40.0% | |
| GCTGTTAAGGAACCATATGA+AGG | + | chr3.3:2061666-2061685 | MS.gene63669:CDS | 40.0% | |
| GTCACTTCCATCAACTAATC+TGG | - | chr3.3:2060954-2060973 | None:intergenic | 40.0% | |
| TAAGGAACCATATGAAGGCA+TGG | + | chr3.3:2061671-2061690 | MS.gene63669:CDS | 40.0% | |
| TTCTGCTGGTGACTTAATGT+GGG | - | chr3.3:2061186-2061205 | None:intergenic | 40.0% | |
| TTTCTGCTGGTGACTTAATG+TGG | - | chr3.3:2061187-2061206 | None:intergenic | 40.0% | |
| ! | AGTTATTCTGGGAGAGAGTT+GGG | + | chr3.3:2061627-2061646 | MS.gene63669:CDS | 40.0% |
| ! | AGTTTCTGGGGATGGTAATT+TGG | + | chr3.3:2060982-2061001 | MS.gene63669:CDS | 40.0% |
| ! | GTTTCTGGGGATGGTAATTT+GGG | + | chr3.3:2060983-2061002 | MS.gene63669:CDS | 40.0% |
| !! | GATTAGTTGATGGAAGTGAC+GGG | + | chr3.3:2060954-2060973 | MS.gene63669:CDS | 40.0% |
| CCGCAGGTTTGGATGTAATA+AGG | + | chr3.3:2061809-2061828 | MS.gene63669:CDS | 45.0% | |
| CTGGTGCAAAAGCTCTTCTA+TGG | - | chr3.3:2062592-2062611 | None:intergenic | 45.0% | |
| GATGAATATGCCCGACATGT+AGG | + | chr3.3:2061729-2061748 | MS.gene63669:CDS | 45.0% | |
| GTCAGCATACAAGGGAAACT+TGG | + | chr3.3:2061843-2061862 | MS.gene63669:CDS | 45.0% | |
| GTCATTGCGTCAGCATACAA+GGG | + | chr3.3:2061835-2061854 | MS.gene63669:CDS | 45.0% | |
| TCATGCGTGTGATGTCTTGT+CGG | + | chr3.3:2061757-2061776 | MS.gene63669:CDS | 45.0% | |
| TGACAGTGGAACCGAATGAT+GGG | + | chr3.3:2061589-2061608 | MS.gene63669:intron | 45.0% | |
| TGGTCCAGTTCGTAAACCAA+GGG | + | chr3.3:2061863-2061882 | MS.gene63669:CDS | 45.0% | |
| TTGGTCCAGTTCGTAAACCA+AGG | + | chr3.3:2061862-2061881 | MS.gene63669:CDS | 45.0% | |
| ! | GAGTTATTCTGGGAGAGAGT+TGG | + | chr3.3:2061626-2061645 | MS.gene63669:CDS | 45.0% |
| !! | ACCGAATGATGGGTGTAGAT+CGG | + | chr3.3:2061599-2061618 | MS.gene63669:CDS | 45.0% |
| ACGTGAAGCACGCCAAACAA+CGG | + | chr3.3:2061998-2062017 | MS.gene63669:CDS | 50.0% | |
| CACCAGCAGAAACTGCTCTA+GGG | + | chr3.3:2061195-2061214 | MS.gene63669:intron | 50.0% | |
| CTTGCAACCTTCCCTTGTGA+CGG | - | chr3.3:2061889-2061908 | None:intergenic | 50.0% | |
| GCCGATCTACACCCATCATT+CGG | - | chr3.3:2061603-2061622 | None:intergenic | 50.0% | |
| GGCACTCAGAAAGAGATGGA+AGG | + | chr3.3:2061778-2061797 | MS.gene63669:CDS | 50.0% | |
| GGTCATTGCGTCAGCATACA+AGG | + | chr3.3:2061834-2061853 | MS.gene63669:CDS | 50.0% | |
| GTGACAGTGGAACCGAATGA+TGG | + | chr3.3:2061588-2061607 | MS.gene63669:intron | 50.0% | |
| TAAACCAAGGGCCGTCACAA+GGG | + | chr3.3:2061875-2061894 | MS.gene63669:CDS | 50.0% | |
| TCACCAGCAGAAACTGCTCT+AGG | + | chr3.3:2061194-2061213 | MS.gene63669:intron | 50.0% | |
| TGTCGGCACTCAGAAAGAGA+TGG | + | chr3.3:2061774-2061793 | MS.gene63669:CDS | 50.0% | |
| !! | AGTTGATGGAAGTGACGGGA+CGG | + | chr3.3:2060958-2060977 | MS.gene63669:CDS | 50.0% |
| ACGGCCCTTGGTTTACGAAC+TGG | - | chr3.3:2061870-2061889 | None:intergenic | 55.0% | |
| CACCCTAGAGCAGTTTCTGC+TGG | - | chr3.3:2061200-2061219 | None:intergenic | 55.0% | |
| CGTCACAAGGGAAGGTTGCA+AGG | + | chr3.3:2061887-2061906 | MS.gene63669:CDS | 55.0% | |
| GTAAACCAAGGGCCGTCACA+AGG | + | chr3.3:2061874-2061893 | MS.gene63669:CDS | 55.0% | |
| GTTGTTTGGCGTGCTTCACG+TGG | - | chr3.3:2061999-2062018 | None:intergenic | 55.0% | |
| TCACGTGGAGAGACTACCAG+TGG | - | chr3.3:2061984-2062003 | None:intergenic | 55.0% | |
| TGACGGGACGGAAGTTTCTG+GGG | + | chr3.3:2060970-2060989 | MS.gene63669:CDS | 55.0% | |
| ! | AGTGACGGGACGGAAGTTTC+TGG | + | chr3.3:2060968-2060987 | MS.gene63669:CDS | 55.0% |
| ! | GTGACGGGACGGAAGTTTCT+GGG | + | chr3.3:2060969-2060988 | MS.gene63669:CDS | 55.0% |
| !! | AGAAACTGCTCTAGGGTGGC+GGG | + | chr3.3:2061202-2061221 | MS.gene63669:intron | 55.0% |
| !! | CAGAAACTGCTCTAGGGTGG+CGG | + | chr3.3:2061201-2061220 | MS.gene63669:intron | 55.0% |
| !! | CAGCAGAAACTGCTCTAGGG+TGG | + | chr3.3:2061198-2061217 | MS.gene63669:intron | 55.0% |
| AGGATTCTCGCCCGCAGGTT+TGG | + | chr3.3:2061798-2061817 | MS.gene63669:CDS | 60.0% | |
| ATGGAAGGATTCTCGCCCGC+AGG | + | chr3.3:2061793-2061812 | MS.gene63669:CDS | 60.0% | |
| ! | GGGACGGAAGTTTCTGGGGA+TGG | + | chr3.3:2060974-2060993 | MS.gene63669:CDS | 60.0% |
| CCAAGGGCCGTCACAAGGGA+AGG | + | chr3.3:2061879-2061898 | MS.gene63669:CDS | 65.0% | |
| CCTTCCCTTGTGACGGCCCT+TGG | - | chr3.3:2061882-2061901 | None:intergenic | 65.0% | |
| !! | TAGGGTGGCGGGTCATACCC+AGG | + | chr3.3:2061213-2061232 | MS.gene63669:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 2060944 | 2062617 | 2060944 | ID=MS.gene63669 |
| chr3.3 | mRNA | 2060944 | 2062617 | 2060944 | ID=MS.gene63669.t1;Parent=MS.gene63669 |
| chr3.3 | exon | 2060944 | 2061004 | 2060944 | ID=MS.gene63669.t1.exon1;Parent=MS.gene63669.t1 |
| chr3.3 | CDS | 2060944 | 2061004 | 2060944 | ID=cds.MS.gene63669.t1;Parent=MS.gene63669.t1 |
| chr3.3 | exon | 2061595 | 2062019 | 2061595 | ID=MS.gene63669.t1.exon2;Parent=MS.gene63669.t1 |
| chr3.3 | CDS | 2061595 | 2062019 | 2061595 | ID=cds.MS.gene63669.t1;Parent=MS.gene63669.t1 |
| chr3.3 | exon | 2062417 | 2062617 | 2062417 | ID=MS.gene63669.t1.exon3;Parent=MS.gene63669.t1 |
| chr3.3 | CDS | 2062417 | 2062617 | 2062417 | ID=cds.MS.gene63669.t1;Parent=MS.gene63669.t1 |
| Gene Sequence |
| Protein sequence |
