AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63672

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63672.t1 MTR_3g006370 93.023 215 9 1 30 244 21 229 3.87e-147 410
MS.gene63672.t1 MTR_4g067290 42.857 175 92 3 61 231 52 222 1.56e-38 134
MS.gene63672.t1 MTR_4g067290 42.857 175 92 3 61 231 72 242 2.23e-38 134
MS.gene63672.t1 MTR_4g067290 42.857 175 92 3 61 231 70 240 2.48e-38 134
MS.gene63672.t1 MTR_4g067290 42.373 177 92 3 61 231 52 224 2.55e-38 134
MS.gene63672.t1 MTR_4g067290 42.373 177 92 3 61 231 72 244 4.54e-38 134
MS.gene63672.t1 MTR_2g098920 40.217 184 101 3 61 239 76 255 1.06e-37 133
MS.gene63672.t1 MTR_4g067290 42.373 177 92 3 61 231 112 284 1.52e-37 133
MS.gene63672.t1 MTR_2g098880 37.895 190 104 4 59 235 55 243 1.53e-36 129
MS.gene63672.t1 MTR_2g098880 37.824 193 100 5 59 235 67 255 2.33e-36 129
MS.gene63672.t1 MTR_2g070590 37.736 106 64 2 65 169 17 121 1.33e-13 65.9
MS.gene63672.t1 MTR_0402s0040 37.500 104 63 2 65 167 26 128 1.60e-12 67.0
MS.gene63672.t1 MTR_5g015480 38.095 105 63 2 65 168 56 159 5.65e-12 64.3
MS.gene63672.t1 MTR_1g057920 39.560 91 53 2 65 154 34 123 1.27e-11 60.5
MS.gene63672.t1 MTR_6g017200 37.113 97 59 2 65 160 58 153 3.26e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63672.t1 AT2G43280 73.224 183 48 1 59 241 17 198 1.64e-99 288
MS.gene63672.t1 AT2G43280 74.233 163 42 0 79 241 1 163 1.43e-91 267
MS.gene63672.t1 AT3G07500 47.872 188 91 3 55 236 23 209 5.52e-51 166
MS.gene63672.t1 AT4G12850 43.646 181 90 2 59 235 5 177 3.00e-46 152
MS.gene63672.t1 AT3G59470 46.629 178 84 4 64 235 69 241 3.94e-42 144
MS.gene63672.t1 AT3G59470 46.629 178 84 4 64 235 69 241 3.94e-42 144
MS.gene63672.t1 AT3G59470 46.629 178 84 4 64 235 81 253 5.34e-42 144
MS.gene63672.t1 AT4G12850 50.442 113 44 2 59 167 5 109 1.48e-30 110
MS.gene63672.t1 AT4G12850 50.442 113 44 2 59 167 5 109 1.63e-30 110
MS.gene63672.t1 AT4G38180 52.336 107 49 1 64 168 72 178 2.86e-24 101
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.05e-17 82.4
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.07e-17 82.4
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.07e-17 82.4
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.10e-17 82.4
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.10e-17 82.4
MS.gene63672.t1 AT2G32250 34.351 131 80 2 61 191 34 158 1.10e-17 82.4
MS.gene63672.t1 AT2G32250 34.146 123 75 2 69 191 1 117 1.80e-16 79.0
MS.gene63672.t1 AT2G32250 34.146 123 75 2 69 191 1 117 1.85e-16 78.6
MS.gene63672.t1 AT3G06250 40.385 104 48 1 64 167 189 278 2.58e-16 78.2
MS.gene63672.t1 AT3G06250 35.088 114 60 1 64 177 27 126 1.41e-15 76.3
MS.gene63672.t1 AT3G06250 40.385 104 48 1 64 167 189 278 2.58e-16 78.2
MS.gene63672.t1 AT3G06250 35.088 114 60 1 64 177 27 126 1.41e-15 76.3
MS.gene63672.t1 AT3G06250 40.385 104 48 1 64 167 189 278 2.58e-16 78.2
MS.gene63672.t1 AT3G06250 35.088 114 60 1 64 177 27 126 1.41e-15 76.3
MS.gene63672.t1 AT5G18960 39.423 104 49 1 64 167 210 299 5.38e-16 77.4
MS.gene63672.t1 AT5G18960 33.600 125 62 2 64 181 42 152 1.32e-15 76.3
MS.gene63672.t1 AT5G18960 39.423 104 49 1 64 167 210 299 5.38e-16 77.4
MS.gene63672.t1 AT5G18960 33.600 125 62 2 64 181 42 152 1.32e-15 76.3
MS.gene63672.t1 AT4G15090 33.582 134 78 3 42 168 24 153 9.68e-16 76.6
MS.gene63672.t1 AT4G15090 33.582 134 78 3 42 168 24 153 9.68e-16 76.6
MS.gene63672.t1 AT4G15090 33.582 134 78 3 42 168 24 153 9.68e-16 76.6
MS.gene63672.t1 AT4G15090 33.582 134 78 3 42 168 24 153 9.68e-16 76.6
MS.gene63672.t1 AT4G15090 33.582 134 78 3 42 168 24 153 9.68e-16 76.6
MS.gene63672.t1 AT2G27110 33.548 155 74 6 20 170 9 138 1.88e-15 75.9
MS.gene63672.t1 AT2G27110 33.548 155 74 6 20 170 9 138 1.88e-15 75.9
MS.gene63672.t1 AT1G76320 36.792 106 61 2 69 174 1 100 1.61e-14 73.2
MS.gene63672.t1 AT1G76320 36.792 106 61 2 69 174 1 100 1.61e-14 73.2
MS.gene63672.t1 AT1G76320 36.792 106 61 2 69 174 1 100 1.64e-14 73.2
MS.gene63672.t1 AT1G76320 36.792 106 61 2 69 174 1 100 1.70e-14 72.8
MS.gene63672.t1 AT3G22170 34.127 126 71 2 64 177 69 194 3.25e-14 72.0
MS.gene63672.t1 AT3G22170 34.127 126 71 2 64 177 69 194 3.25e-14 72.0
MS.gene63672.t1 AT4G19990 33.594 128 73 2 54 169 10 137 4.56e-14 71.6
MS.gene63672.t1 AT4G19990 33.594 128 73 2 54 169 10 137 4.56e-14 71.6
MS.gene63672.t1 AT4G19990 33.594 128 73 2 54 169 10 137 4.64e-14 71.6
MS.gene63672.t1 AT4G19990 33.594 128 73 2 54 169 10 137 4.64e-14 71.6
MS.gene63672.t1 AT4G19990 33.594 128 73 2 54 169 10 137 4.68e-14 71.6
MS.gene63672.t1 AT4G19990 34.127 126 71 2 54 167 24 149 4.71e-14 71.6

Find 58 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCGGAAAAGAGTTATTC+TGG 0.296771 3.3:+1971792 MS.gene63672:CDS
AGTATGATCAGTCCGGAAAA+TGG 0.304694 3.3:+1972123 MS.gene63672:CDS
AGGATTCTCGCCCGCAGGTT+TGG 0.350053 3.3:+1971996 MS.gene63672:CDS
CCGCAGGTTTGGATGTAATA+AGG 0.351849 3.3:+1972007 MS.gene63672:CDS
ATTATGGATTTACCATTGTT+TGG 0.357489 3.3:-1972208 None:intergenic
TTGAAAGGATGTTTACTAAG+AGG 0.367786 3.3:-1971458 None:intergenic
TGAGAAGGATAAGAAAATTC+AGG 0.371151 3.3:+1972615 MS.gene63672:CDS
AGTTATTCTGGGAGAGAGTT+GGG 0.374971 3.3:+1971804 MS.gene63672:CDS
TGATCATGACCATGCTGTTA+AGG 0.378319 3.3:+1971851 MS.gene63672:CDS
TGCAGGTGGGAAAGAGCTTC+TGG 0.388048 3.3:+1971423 MS.gene63672:CDS
TGGGAAAGAGCTTCTGGTTA+AGG 0.390045 3.3:+1971429 MS.gene63672:CDS
ACAAATTCCATGCCTTCATA+TGG 0.406605 3.3:-1971876 None:intergenic
CTGGCCCTTGGTTTACGAAC+TGG 0.417375 3.3:-1972065 None:intergenic
TCCGATCTACACCCATCATT+CGG 0.425751 3.3:-1971777 None:intergenic
CTGGTGCAAAAGCTCTTCTA+TGG 0.431453 3.3:-1972785 None:intergenic
CCTTCCCTAGTGCTGGCCCT+TGG 0.440050 3.3:-1972077 None:intergenic
TTTGTCGTGGTTCTTGTATG+AGG 0.441087 3.3:-1971483 None:intergenic
AAATATCTTAGCAGCATCTT+CGG 0.446381 3.3:-1971901 None:intergenic
GAGTTATTCTGGGAGAGAGT+TGG 0.452971 3.3:+1971803 MS.gene63672:CDS
CAGCACTAGGGAAGGTTGTA+AGG 0.453970 3.3:+1972085 MS.gene63672:CDS
GGTCATTGTGTCAGCATACA+AGG 0.462427 3.3:+1972032 MS.gene63672:CDS
GTATGATCAGTCCGGAAAAT+GGG 0.472464 3.3:+1972124 MS.gene63672:CDS
AGGAACTAACAGTAGAGCTT+CGG 0.480103 3.3:+1972635 MS.gene63672:CDS
GTCAGCATACAAGGGAAACT+TGG 0.481454 3.3:+1972041 MS.gene63672:CDS
TAATGCGTGTGATGTCTTGT+CGG 0.484944 3.3:+1971955 MS.gene63672:CDS
TGAAAGGATGTTTACTAAGA+GGG 0.485649 3.3:-1971457 None:intergenic
GTAAACCAAGGGCCAGCACT+AGG 0.487984 3.3:+1972072 MS.gene63672:CDS
ACATAATGCAGGGCTACGTC+TGG 0.504943 3.3:-1972804 None:intergenic
TGTGATGTCTTGTCGGCGCT+CGG 0.527714 3.3:+1971962 MS.gene63672:CDS
ATGGTAGGATTCTCGCCCGC+AGG 0.530043 3.3:+1971991 MS.gene63672:CDS
CATATCAAGTATGATCAGTC+CGG 0.531806 3.3:+1972116 MS.gene63672:CDS
CTTACAACCTTCCCTAGTGC+TGG 0.535860 3.3:-1972084 None:intergenic
GATGAATATGGCCGACATGT+AGG 0.539154 3.3:+1971927 MS.gene63672:CDS
GATCGGAAAAGAGTTATTCT+GGG 0.541626 3.3:+1971793 MS.gene63672:CDS
TAAACCAAGGGCCAGCACTA+GGG 0.547162 3.3:+1972073 MS.gene63672:CDS
ACCGAATGATGGGTGTAGAT+CGG 0.551733 3.3:+1971776 MS.gene63672:CDS
GTGACAGTGGAACCGAATGA+TGG 0.566161 3.3:+1971765 MS.gene63672:intron
CTTATTACATCCAAACCTGC+GGG 0.573213 3.3:-1972006 None:intergenic
ATTGTTTGGCGTGCTTCACG+TGG 0.576935 3.3:-1972194 None:intergenic
GAAGGAAAAGGCGATGCAGG+TGG 0.585646 3.3:+1971409 None:intergenic
GCTGTTAAGGAACCATATGA+AGG 0.588056 3.3:+1971864 MS.gene63672:CDS
TAAGGAACCATATGAAGGCA+TGG 0.594188 3.3:+1971869 MS.gene63672:CDS
CCAAGGGCCAGCACTAGGGA+AGG 0.608378 3.3:+1972077 MS.gene63672:CDS
CATATGGTTCCTTAACAGCA+TGG 0.608918 3.3:-1971860 None:intergenic
TGTCGGCGCTCGGAAAGAGA+TGG 0.610372 3.3:+1971972 MS.gene63672:CDS
TGACAGTGGAACCGAATGAT+GGG 0.614797 3.3:+1971766 MS.gene63672:intron
CATGGTCATGATCAGAGATA+CGG 0.615572 3.3:-1971842 None:intergenic
ACGTGAAGCACGCCAAACAA+TGG 0.620174 3.3:+1972196 MS.gene63672:CDS
TTGGTCCAGTTCGTAAACCA+AGG 0.623231 3.3:+1972060 MS.gene63672:CDS
CAGGTTTGGATGTAATAAGG+AGG 0.625678 3.3:+1972010 MS.gene63672:CDS
CCTTATTACATCCAAACCTG+CGG 0.631158 3.3:-1972007 None:intergenic
GCATTACAAATCCTACATGT+CGG 0.642858 3.3:-1971938 None:intergenic
TTCTTGTATGAGGTATTGAA+AGG 0.647212 3.3:-1971473 None:intergenic
AGGTTTGGATGTAATAAGGA+GGG 0.648013 3.3:+1972011 MS.gene63672:CDS
AAGGAAAAGGCGATGCAGGT+GGG 0.655462 3.3:+1971410 None:intergenic
TGGTCCAGTTCGTAAACCAA+GGG 0.657286 3.3:+1972061 MS.gene63672:CDS
GTCATTGTGTCAGCATACAA+GGG 0.663280 3.3:+1972033 MS.gene63672:CDS
GGCGCTCGGAAAGAGATGGT+AGG 0.693531 3.3:+1971976 MS.gene63672:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATCAATTAAAAAATA+TGG - chr3.3:1972299-1972318 None:intergenic 10.0%
!! ATTATATTATATAACATCTC+TGG + chr3.3:1972522-1972541 MS.gene63672:intron 15.0%
!!! AAGATATTTTATGATGAATA+TGG + chr3.3:1971915-1971934 MS.gene63672:CDS 15.0%
!!! TCTTCATTTCTATATTTTTT+TGG + chr3.3:1972377-1972396 MS.gene63672:intron 15.0%
!!! ATCCATAATTCTTATTTAAC+CGG + chr3.3:1972222-1972241 MS.gene63672:intron 20.0%
!!! GAAGCTAATATTATTGTTTT+TGG + chr3.3:1972433-1972452 MS.gene63672:intron 20.0%
!!! TGATTGCTTTAAATGAAAAA+TGG - chr3.3:1971666-1971685 None:intergenic 20.0%
! AACCGGTTAAATAAGAATTA+TGG - chr3.3:1972227-1972246 None:intergenic 25.0%
! AAGAAACCTATAGTTATTAG+AGG - chr3.3:1971586-1971605 None:intergenic 25.0%
! AAGATAAATTATTGTGACAG+TGG + chr3.3:1971752-1971771 MS.gene63672:intron 25.0%
! ATGCAAAAATAAGTTATGCA+TGG - chr3.3:1971711-1971730 None:intergenic 25.0%
! ATTATGGATTTACCATTGTT+TGG - chr3.3:1972211-1972230 None:intergenic 25.0%
AAATATCTTAGCAGCATCTT+CGG - chr3.3:1971904-1971923 None:intergenic 30.0%
TAGAGCTTCGGATTAAAAAA+CGG + chr3.3:1972647-1972666 MS.gene63672:CDS 30.0%
TGAAAGGATGTTTACTAAGA+GGG - chr3.3:1971460-1971479 None:intergenic 30.0%
TGAGAAGGATAAGAAAATTC+AGG + chr3.3:1972615-1972634 MS.gene63672:CDS 30.0%
TTAGAGCCTCTAATAACTAT+AGG + chr3.3:1971577-1971596 MS.gene63672:intron 30.0%
TTGAAAGGATGTTTACTAAG+AGG - chr3.3:1971461-1971480 None:intergenic 30.0%
! ATAGTTATTAGAGGCTCTAA+AGG - chr3.3:1971577-1971596 None:intergenic 30.0%
! ATATTAGCTTCTTCTTACCA+AGG - chr3.3:1972424-1972443 None:intergenic 30.0%
! GTTTTCCAAAGATTGAAAAC+CGG - chr3.3:1972244-1972263 None:intergenic 30.0%
!! TAGTTATTAGAGGCTCTAAA+GGG - chr3.3:1971576-1971595 None:intergenic 30.0%
!! TTCTTGTATGAGGTATTGAA+AGG - chr3.3:1971476-1971495 None:intergenic 30.0%
!! TTTAACCGGTTTTCAATCTT+TGG + chr3.3:1972236-1972255 MS.gene63672:intron 30.0%
!!! GTTTTTGTTTTAGGATGAGA+AGG + chr3.3:1972600-1972619 MS.gene63672:intron 30.0%
!!! TTCTGCGTTGTTTTTGTTTT+AGG + chr3.3:1972591-1972610 MS.gene63672:intron 30.0%
ACAAATTCCATGCCTTCATA+TGG - chr3.3:1971879-1971898 None:intergenic 35.0%
AGATCGGAAAAGAGTTATTC+TGG + chr3.3:1971792-1971811 MS.gene63672:CDS 35.0%
AGGTTTGGATGTAATAAGGA+GGG + chr3.3:1972011-1972030 MS.gene63672:CDS 35.0%
CATATCAAGTATGATCAGTC+CGG + chr3.3:1972116-1972135 MS.gene63672:CDS 35.0%
GATCGGAAAAGAGTTATTCT+GGG + chr3.3:1971793-1971812 MS.gene63672:CDS 35.0%
GCATTACAAATCCTACATGT+CGG - chr3.3:1971941-1971960 None:intergenic 35.0%
TAAAACGTTATATTGTGCCC+AGG + chr3.3:1972313-1972332 MS.gene63672:intron 35.0%
TACAAGAACCACGACAAAAA+CGG + chr3.3:1971488-1971507 MS.gene63672:CDS 35.0%
TCACAAAGAGGAGTTAAAAC+AGG - chr3.3:1972476-1972495 None:intergenic 35.0%
!! CTTTGTTATCACCCATTTTC+CGG - chr3.3:1972138-1972157 None:intergenic 35.0%
!!! TGTTTTAACTCCTCTTTGTG+AGG + chr3.3:1972475-1972494 MS.gene63672:intron 35.0%
AGGAACTAACAGTAGAGCTT+CGG + chr3.3:1972635-1972654 MS.gene63672:CDS 40.0%
AGGCATGTATGGAAGAAAGA+AGG + chr3.3:1972333-1972352 MS.gene63672:intron 40.0%
AGTATGATCAGTCCGGAAAA+TGG + chr3.3:1972123-1972142 MS.gene63672:CDS 40.0%
CAGGTTTGGATGTAATAAGG+AGG + chr3.3:1972010-1972029 MS.gene63672:CDS 40.0%
CATATGGTTCCTTAACAGCA+TGG - chr3.3:1971863-1971882 None:intergenic 40.0%
CATGGTCATGATCAGAGATA+CGG - chr3.3:1971845-1971864 None:intergenic 40.0%
CCAAATCTTTCCTCACAAAG+AGG - chr3.3:1972488-1972507 None:intergenic 40.0%
CCTCTTTGTGAGGAAAGATT+TGG + chr3.3:1972485-1972504 MS.gene63672:intron 40.0%
CCTTATTACATCCAAACCTG+CGG - chr3.3:1972010-1972029 None:intergenic 40.0%
CTTATTACATCCAAACCTGC+GGG - chr3.3:1972009-1972028 None:intergenic 40.0%
GCTGTTAAGGAACCATATGA+AGG + chr3.3:1971864-1971883 MS.gene63672:CDS 40.0%
GTATGATCAGTCCGGAAAAT+GGG + chr3.3:1972124-1972143 MS.gene63672:CDS 40.0%
GTCATTGTGTCAGCATACAA+GGG + chr3.3:1972033-1972052 MS.gene63672:CDS 40.0%
TAAAACGTTGTATCGTGCCT+TGG + chr3.3:1972404-1972423 MS.gene63672:intron 40.0%
TAAGGAACCATATGAAGGCA+TGG + chr3.3:1971869-1971888 MS.gene63672:CDS 40.0%
TAATGCGTGTGATGTCTTGT+CGG + chr3.3:1971955-1971974 MS.gene63672:CDS 40.0%
TCTTTCTTCCATACATGCCT+GGG - chr3.3:1972333-1972352 None:intergenic 40.0%
TGATCATGACCATGCTGTTA+AGG + chr3.3:1971851-1971870 MS.gene63672:CDS 40.0%
TTCTTTCTTCCATACATGCC+TGG - chr3.3:1972334-1972353 None:intergenic 40.0%
TTTGTCGTGGTTCTTGTATG+AGG - chr3.3:1971486-1971505 None:intergenic 40.0%
! AGTTATTCTGGGAGAGAGTT+GGG + chr3.3:1971804-1971823 MS.gene63672:CDS 40.0%
!! GTTTCTTACCGTTTTTGTCG+TGG - chr3.3:1971499-1971518 None:intergenic 40.0%
ATATTGTGCCCAGGCATGTA+TGG + chr3.3:1972322-1972341 MS.gene63672:intron 45.0%
CCGCAGGTTTGGATGTAATA+AGG + chr3.3:1972007-1972026 MS.gene63672:CDS 45.0%
CTGGTGCAAAAGCTCTTCTA+TGG - chr3.3:1972788-1972807 None:intergenic 45.0%
CTGTCTCAAAGAGACATCAC+CGG + chr3.3:1971526-1971545 MS.gene63672:intron 45.0%
GATGAATATGGCCGACATGT+AGG + chr3.3:1971927-1971946 MS.gene63672:CDS 45.0%
GGTCATTGTGTCAGCATACA+AGG + chr3.3:1972032-1972051 MS.gene63672:CDS 45.0%
GTCAGCATACAAGGGAAACT+TGG + chr3.3:1972041-1972060 MS.gene63672:CDS 45.0%
TCCGATCTACACCCATCATT+CGG - chr3.3:1971780-1971799 None:intergenic 45.0%
TGACAGTGGAACCGAATGAT+GGG + chr3.3:1971766-1971785 MS.gene63672:intron 45.0%
TGGTCCAGTTCGTAAACCAA+GGG + chr3.3:1972061-1972080 MS.gene63672:CDS 45.0%
TTGGTCCAGTTCGTAAACCA+AGG + chr3.3:1972060-1972079 MS.gene63672:CDS 45.0%
! GAGTTATTCTGGGAGAGAGT+TGG + chr3.3:1971803-1971822 MS.gene63672:CDS 45.0%
! TCTAAAGGGTTTTTCTCCCC+AGG - chr3.3:1971562-1971581 None:intergenic 45.0%
! TGGGAAAGAGCTTCTGGTTA+AGG + chr3.3:1971429-1971448 MS.gene63672:CDS 45.0%
!! ACCGAATGATGGGTGTAGAT+CGG + chr3.3:1971776-1971795 MS.gene63672:CDS 45.0%
!! GTCTCTTTGAGACAGACTAC+TGG - chr3.3:1971521-1971540 None:intergenic 45.0%
ACGTGAAGCACGCCAAACAA+TGG + chr3.3:1972196-1972215 MS.gene63672:CDS 50.0%
ATCACCGGTACAGGTTATCC+TGG + chr3.3:1971541-1971560 MS.gene63672:intron 50.0%
ATTGTTTGGCGTGCTTCACG+TGG - chr3.3:1972197-1972216 None:intergenic 50.0%
CAAAGAGACATCACCGGTAC+AGG + chr3.3:1971532-1971551 MS.gene63672:intron 50.0%
CAGCACTAGGGAAGGTTGTA+AGG + chr3.3:1972085-1972104 MS.gene63672:CDS 50.0%
CTTACAACCTTCCCTAGTGC+TGG - chr3.3:1972087-1972106 None:intergenic 50.0%
GTGACAGTGGAACCGAATGA+TGG + chr3.3:1971765-1971784 MS.gene63672:intron 50.0%
TAAACCAAGGGCCAGCACTA+GGG + chr3.3:1972073-1972092 MS.gene63672:CDS 50.0%
TCACCGGTACAGGTTATCCT+GGG + chr3.3:1971542-1971561 MS.gene63672:intron 50.0%
CACCGGTACAGGTTATCCTG+GGG + chr3.3:1971543-1971562 MS.gene63672:intron 55.0%
CTCCCCAGGATAACCTGTAC+CGG - chr3.3:1971548-1971567 None:intergenic 55.0%
CTGGCCCTTGGTTTACGAAC+TGG - chr3.3:1972068-1972087 None:intergenic 55.0%
GTAAACCAAGGGCCAGCACT+AGG + chr3.3:1972072-1972091 MS.gene63672:CDS 55.0%
TGCAGGTGGGAAAGAGCTTC+TGG + chr3.3:1971423-1971442 MS.gene63672:CDS 55.0%
TGTGATGTCTTGTCGGCGCT+CGG + chr3.3:1971962-1971981 MS.gene63672:CDS 55.0%
AGGATTCTCGCCCGCAGGTT+TGG + chr3.3:1971996-1972015 MS.gene63672:CDS 60.0%
ATGGTAGGATTCTCGCCCGC+AGG + chr3.3:1971991-1972010 MS.gene63672:CDS 60.0%
GGCGCTCGGAAAGAGATGGT+AGG + chr3.3:1971976-1971995 MS.gene63672:CDS 60.0%
TGTCGGCGCTCGGAAAGAGA+TGG + chr3.3:1971972-1971991 MS.gene63672:CDS 60.0%
CCAAGGGCCAGCACTAGGGA+AGG + chr3.3:1972077-1972096 MS.gene63672:CDS 65.0%
!! CCTTCCCTAGTGCTGGCCCT+TGG - chr3.3:1972080-1972099 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 1971422 1972813 1971422 ID=MS.gene63672
chr3.3 mRNA 1971422 1972813 1971422 ID=MS.gene63672.t1;Parent=MS.gene63672
chr3.3 exon 1971422 1971509 1971422 ID=MS.gene63672.t1.exon1;Parent=MS.gene63672.t1
chr3.3 CDS 1971422 1971509 1971422 ID=cds.MS.gene63672.t1;Parent=MS.gene63672.t1
chr3.3 exon 1971772 1972217 1971772 ID=MS.gene63672.t1.exon2;Parent=MS.gene63672.t1
chr3.3 CDS 1971772 1972217 1971772 ID=cds.MS.gene63672.t1;Parent=MS.gene63672.t1
chr3.3 exon 1972613 1972813 1972613 ID=MS.gene63672.t1.exon3;Parent=MS.gene63672.t1
chr3.3 CDS 1972613 1972813 1972613 ID=cds.MS.gene63672.t1;Parent=MS.gene63672.t1
Gene Sequence

>MS.gene63672

ATGCAGGTGGGAAAGAGCTTCTGGTTAAGGAATATCCCTCTTAGTAAACATCCTTTCAATACCTCATACAAGAACCACGACAAAAACGGTAAGAAACCAGTAGTCTGTCTCAAAGAGACATCACCGGTACAGGTTATCCTGGGGAGAAAAACCCTTTAGAGCCTCTAATAACTATAGGTTTCTTGATTTCTTTGCTTCTCTGCAGCTAAACAGCAGAATTCTTTGAATTTAAGTTCTTTCTCCATTTTTCATTTAAAGCAATCAACACAAACGTTATGTCATCATGCCATGCATAACTTATTTTTGCATGAAATTTTTTGATGTGTTCAAAAGATAAATTATTGTGACAGTGGAACCGAATGATGGGTGTAGATCGGAAAAGAGTTATTCTGGGAGAGAGTTGGGTATCTCTGATCATGACCGTATCTCTGATCATGACCATGCTGTTAAGGAACCATATGAAGGCATGGAATTTGTATCCGAAGATGCTGCTAAGATATTTTATGATGAATATGGCCGACATGTAGGATTTGTAATGCGTGTGATGTCTTGTCGGCGCTCGGAAAGAGATGGTAGGATTCTCGCCCGCAGGTTTGGATGTAATAAGGAGGGTCATTGTGTCAGCATACAAGGGAAACTTGGTCCAGTTCGTAAACCAAGGGCCAGCACTAGGGAAGGTTGTAAGGCGATGATTCATATCAAGTATGATCAGTCCGGAAAATGGGTGATAACAAAGTTTGTGAAAGATCATAATCATACACTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGTAAATCCATAATTCTTATTTAACCGGTTTTCAATCTTTGGAAAACTTCTTACTAGTACTAATTTTTTCTCTTCATTTCCATATTTTTTAATTGATAAAACGTTATATTGTGCCCAGGCATGTATGGAAGAAAGAAGGAAACATTACATTAAATTAATTTCTTCATTTCTATATTTTTTTGGTTGATAAAACGTTGTATCGTGCCTTGGTAAGAAGAAGCTAATATTATTGTTTTTGGTTGTTCTATATAGCATGCCTGTTTTAACTCCTCTTTGTGAGGAAAGATTTGGTTGTTATTTTTACTATTATATTATATAACATCTCTGGTCTCTTAAAACAAAATGATGCTTTTGCTGACATTTTCATGATTGCTTTCTGCGTTGTTTTTGTTTTAGGATGAGAAGGATAAGAAAATTCAGGAACTAACAGTAGAGCTTCGGATTAAAAAACGGTTGTGTGTAACATATCAAGAACAGTTAACGTCTTTTATGAAAATTGTCGAAGAGCACAGTGACAAGCTGTCTGCAAGAATTCATCACATACTTGATAATCTTAAAGAATATGAATCCATAGAAGAGCTTTTGCACCAGACGTAG
Protein sequence

>MS.gene63672.t1

MQVGKSFWLRNIPLSKHPFNTSYKNHDKNVEPNDGCRSEKSYSGRELGISDHDRISDHDHAVKEPYEGMEFVSEDAAKIFYDEYGRHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIQGKLGPVRKPRASTREGCKAMIHIKYDQSGKWVITKFVKDHNHTLVVSPREARQTMDEKDKKIQELTVELRIKKRLCVTYQEQLTSFMKIVEEHSDKLSARIHHILDNLKEYESIEELLHQT