Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63692.t1 | XP_013444971.1 | 89.9 | 337 | 24 | 2 | 1 | 331 | 1 | 333 | 4.20E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63692.t1 | O64647 | 46.3 | 294 | 109 | 9 | 72 | 330 | 73 | 352 | 1.3e-46 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63692.t1 | A0A072TP77 | 89.9 | 337 | 24 | 2 | 1 | 331 | 1 | 333 | 3.0e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63692.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63692.t1 | MTR_8g033070 | 94.659 | 337 | 8 | 2 | 1 | 331 | 1 | 333 | 0.0 | 642 |
| MS.gene63692.t1 | MTR_1g101810 | 46.885 | 305 | 119 | 12 | 48 | 329 | 44 | 328 | 9.45e-69 | 218 |
| MS.gene63692.t1 | MTR_1g101810 | 46.885 | 305 | 119 | 12 | 48 | 329 | 74 | 358 | 2.19e-68 | 218 |
| MS.gene63692.t1 | MTR_7g028160 | 75.610 | 82 | 20 | 0 | 70 | 151 | 46 | 127 | 1.75e-38 | 138 |
| MS.gene63692.t1 | MTR_5g039600 | 79.221 | 77 | 16 | 0 | 70 | 146 | 63 | 139 | 2.10e-37 | 138 |
| MS.gene63692.t1 | MTR_4g108370 | 83.562 | 73 | 12 | 0 | 70 | 142 | 93 | 165 | 1.19e-36 | 137 |
| MS.gene63692.t1 | MTR_2g006150 | 78.947 | 76 | 16 | 0 | 71 | 146 | 127 | 202 | 4.50e-36 | 135 |
| MS.gene63692.t1 | MTR_2g006150 | 78.947 | 76 | 16 | 0 | 71 | 146 | 127 | 202 | 6.19e-36 | 135 |
| MS.gene63692.t1 | MTR_1g063870 | 87.500 | 64 | 8 | 0 | 73 | 136 | 48 | 111 | 1.39e-34 | 125 |
| MS.gene63692.t1 | MTR_1g114380 | 68.293 | 82 | 26 | 0 | 65 | 146 | 24 | 105 | 4.54e-32 | 120 |
| MS.gene63692.t1 | MTR_1g038650 | 77.612 | 67 | 15 | 0 | 70 | 136 | 28 | 94 | 1.71e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63692.t1 | AT2G45680 | 52.667 | 300 | 85 | 11 | 70 | 330 | 71 | 352 | 2.44e-79 | 246 |
| MS.gene63692.t1 | AT5G51910 | 51.128 | 266 | 80 | 10 | 70 | 324 | 53 | 279 | 5.93e-68 | 215 |
| MS.gene63692.t1 | AT5G51910 | 51.128 | 266 | 80 | 10 | 70 | 324 | 53 | 279 | 5.93e-68 | 215 |
| MS.gene63692.t1 | AT1G69690 | 83.562 | 73 | 12 | 0 | 70 | 142 | 48 | 120 | 1.90e-37 | 136 |
| MS.gene63692.t1 | AT3G47620 | 69.149 | 94 | 28 | 1 | 49 | 142 | 93 | 185 | 3.77e-36 | 136 |
| MS.gene63692.t1 | AT3G27010 | 87.879 | 66 | 8 | 0 | 70 | 135 | 74 | 139 | 1.83e-35 | 131 |
| MS.gene63692.t1 | AT3G27010 | 87.879 | 66 | 8 | 0 | 70 | 135 | 74 | 139 | 1.83e-35 | 131 |
| MS.gene63692.t1 | AT1G72010 | 78.082 | 73 | 16 | 0 | 74 | 146 | 63 | 135 | 1.44e-34 | 130 |
| MS.gene63692.t1 | AT1G58100 | 84.848 | 66 | 10 | 0 | 71 | 136 | 57 | 122 | 5.03e-34 | 129 |
| MS.gene63692.t1 | AT1G35560 | 75.342 | 73 | 18 | 0 | 74 | 146 | 55 | 127 | 9.58e-32 | 122 |
| MS.gene63692.t1 | AT5G23280 | 71.622 | 74 | 21 | 0 | 63 | 136 | 28 | 101 | 4.19e-31 | 118 |
| MS.gene63692.t1 | AT5G08330 | 77.612 | 67 | 15 | 0 | 70 | 136 | 27 | 93 | 4.60e-31 | 117 |
| MS.gene63692.t1 | AT5G41030 | 67.164 | 67 | 22 | 0 | 69 | 135 | 63 | 129 | 1.00e-27 | 108 |
| MS.gene63692.t1 | AT2G37000 | 78.333 | 60 | 13 | 0 | 74 | 133 | 43 | 102 | 1.43e-26 | 104 |
| MS.gene63692.t1 | AT3G45150 | 59.375 | 64 | 26 | 0 | 69 | 132 | 12 | 75 | 2.41e-21 | 89.7 |
| MS.gene63692.t1 | AT1G58100 | 86.111 | 36 | 5 | 0 | 71 | 106 | 57 | 92 | 1.50e-14 | 74.3 |
Find 84 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCCTGGGTTTGGGCT+TGG | 0.109243 | 8.4:+62852979 | None:intergenic |
| CTTGAGCTTGGGCCTGGGTT+TGG | 0.124774 | 8.4:+62852973 | None:intergenic |
| TTGAGCTTGGGCCTGGGTTT+GGG | 0.152560 | 8.4:+62852974 | None:intergenic |
| GCCGATACATCTTCTATTTC+CGG | 0.161142 | 8.4:+62853083 | None:intergenic |
| TTGGGCCTGGGTTTGGGCTT+GGG | 0.181827 | 8.4:+62852980 | None:intergenic |
| GTTGGGCTTGAGCTTGGGCC+TGG | 0.187452 | 8.4:+62852967 | None:intergenic |
| TTCTATTTCCGGTTCCTCTT+TGG | 0.188199 | 8.4:+62853094 | None:intergenic |
| TGTTGGTTTGGTTCTTGATT+AGG | 0.203445 | 8.4:+62852675 | None:intergenic |
| GTTGGTTTGGTTCTTGATTA+GGG | 0.229302 | 8.4:+62852676 | None:intergenic |
| TTGTGGGTTGTTGAGGAATT+AGG | 0.287595 | 8.4:+62852505 | None:intergenic |
| TCTATTTCCGGTTCCTCTTT+GGG | 0.291488 | 8.4:+62853095 | None:intergenic |
| GAAGAAACAAAACCGGTTAT+TGG | 0.308809 | 8.4:+62852363 | None:intergenic |
| CGGACTTATGTCCGAGTTCT+CGG | 0.317153 | 8.4:+62852835 | None:intergenic |
| GGCGGGGACTGTGCCGGTTC+CGG | 0.330630 | 8.4:+62852755 | None:intergenic |
| GCTTGTTGAACTTGAATAAC+TGG | 0.332426 | 8.4:+62852330 | None:intergenic |
| GTTGTTGAGGAATTAGGTTT+AGG | 0.343171 | 8.4:+62852511 | None:intergenic |
| TTGGGCTTGAGCTTGGGCCT+GGG | 0.356283 | 8.4:+62852968 | None:intergenic |
| GACTGTGCCGGTTCCGGTGG+CGG | 0.366048 | 8.4:+62852761 | None:intergenic |
| ATCATTGCCGCCACCGGAAC+CGG | 0.373706 | 8.4:-62852768 | MS.gene63692:CDS |
| TGTTTGTTGGGCTTGAGCTT+GGG | 0.377692 | 8.4:+62852962 | None:intergenic |
| CAGGTGATTCATCGGATTGT+TGG | 0.389458 | 8.4:+62852658 | None:intergenic |
| GATTCATCGGATTGTTGGTT+TGG | 0.389852 | 8.4:+62852663 | None:intergenic |
| CACAAAACATGGTTCCTGTA+TGG | 0.395588 | 8.4:-62852473 | MS.gene63692:CDS |
| GTTTGAGGTTGTTATTAAAC+CGG | 0.413851 | 8.4:+62852563 | None:intergenic |
| TTGGGCTTGGGCTTGAACCA+AGG | 0.418040 | 8.4:+62852992 | None:intergenic |
| TGTGTTTGTGTTTATGTTTG+AGG | 0.421063 | 8.4:+62852548 | None:intergenic |
| AGAAACATTGATCTCACTCT+TGG | 0.422119 | 8.4:-62853122 | MS.gene63692:CDS |
| CCGGTGGCGGCAATGATAGC+TGG | 0.423227 | 8.4:+62852774 | None:intergenic |
| TAGCTGGCTCCGCGTGTTCG+AGG | 0.423931 | 8.4:+62852790 | None:intergenic |
| TTTGGTACAACAGCGTTTGA+TGG | 0.425689 | 8.4:+62852444 | None:intergenic |
| CAAGGCTTTGTTGACTTGCA+TGG | 0.428361 | 8.4:+62853010 | None:intergenic |
| TTGTTTGTTGGGCTTGAGCT+TGG | 0.430146 | 8.4:+62852961 | None:intergenic |
| GTACTTGCTGCAACTGTGCT+TGG | 0.438849 | 8.4:+62852252 | None:intergenic |
| CTGCACATGTGGCAGGCATT+CGG | 0.442371 | 8.4:+62852877 | None:intergenic |
| TTGACTGACATGGCGATGGC+GGG | 0.451232 | 8.4:+62852738 | None:intergenic |
| TGGCAGGCATTCGGATCCTT+CGG | 0.454844 | 8.4:+62852886 | None:intergenic |
| TGGAGAGCCCAAAGAGGAAC+CGG | 0.460137 | 8.4:-62853102 | MS.gene63692:CDS |
| CCAGCTATCATTGCCGCCAC+CGG | 0.478903 | 8.4:-62852774 | MS.gene63692:CDS |
| ACCACCGTTTCTGTTTCAAC+CGG | 0.480270 | 8.4:-62852582 | MS.gene63692:CDS |
| GATGACCATGCACGTGCCAC+CGG | 0.487925 | 8.4:-62853045 | MS.gene63692:CDS |
| ACAAAACATGGTTCCTGTAT+GGG | 0.488455 | 8.4:-62852472 | MS.gene63692:CDS |
| TCTACGTAAGCACTGTTTGA+AGG | 0.493291 | 8.4:+62852615 | None:intergenic |
| ACATTGGCTAGACCAATAAC+CGG | 0.496766 | 8.4:-62852375 | MS.gene63692:CDS |
| ATGACCATGCACGTGCCACC+GGG | 0.497135 | 8.4:-62853044 | MS.gene63692:CDS |
| GGACTTATGTCCGAGTTCTC+GGG | 0.506633 | 8.4:+62852836 | None:intergenic |
| ATCCGAGCTGCACATGTGGC+AGG | 0.507450 | 8.4:+62852870 | None:intergenic |
| GGCGATGGCGGGGACTGTGC+CGG | 0.508002 | 8.4:+62852749 | None:intergenic |
| GCCATCACTGTAGCTCTAGC+TGG | 0.509355 | 8.4:+62852276 | None:intergenic |
| TTGTTGACTTGCATGGACAT+AGG | 0.520580 | 8.4:+62853017 | None:intergenic |
| AACCATCGAAGAAACAAAAC+CGG | 0.524083 | 8.4:+62852356 | None:intergenic |
| AACTGAATTGTGGGTTGTTG+AGG | 0.526600 | 8.4:+62852498 | None:intergenic |
| TATCCCCGGTGGCACGTGCA+TGG | 0.533191 | 8.4:+62853040 | None:intergenic |
| TTTCAGCTGACCCGAGAACT+CGG | 0.539737 | 8.4:-62852846 | MS.gene63692:CDS |
| TCAAACGCTGTTGTACCAAA+CGG | 0.547610 | 8.4:-62852441 | MS.gene63692:CDS |
| GGTGGCACGTGCATGGTCAT+CGG | 0.547673 | 8.4:+62853047 | None:intergenic |
| CCAGCGAATTGTTTCGCCAT+CGG | 0.548505 | 8.4:+62852815 | None:intergenic |
| GGGGACTGTGCCGGTTCCGG+TGG | 0.549398 | 8.4:+62852758 | None:intergenic |
| CACACAAAAGTCGAGGGTCG+AGG | 0.552285 | 8.4:-62852909 | MS.gene63692:CDS |
| TAAACCGGTTGAAACAGAAA+CGG | 0.564370 | 8.4:+62852578 | None:intergenic |
| ACCGGAAATAGAAGATGTAT+CGG | 0.565866 | 8.4:-62853084 | MS.gene63692:CDS |
| TTTGATGGTATAGCCCATAC+AGG | 0.566203 | 8.4:+62852459 | None:intergenic |
| AAGTCGAGGGTCGAGGCCGA+AGG | 0.575723 | 8.4:-62852902 | MS.gene63692:CDS |
| CATGCAAGTCAACAAAGCCT+TGG | 0.580583 | 8.4:-62853009 | MS.gene63692:CDS |
| TGCATGGACATAGGTATCCC+CGG | 0.581741 | 8.4:+62853026 | None:intergenic |
| TGACTGACATGGCGATGGCG+GGG | 0.586914 | 8.4:+62852739 | None:intergenic |
| AATTCAGTTACCACAAAACA+TGG | 0.589831 | 8.4:-62852484 | MS.gene63692:CDS |
| TGCCTGCCACATGTGCAGCT+CGG | 0.589961 | 8.4:-62852872 | MS.gene63692:CDS |
| AAAGATCCGAGCTGCACATG+TGG | 0.591484 | 8.4:+62852866 | None:intergenic |
| GTTGACTGACATGGCGATGG+CGG | 0.598518 | 8.4:+62852737 | None:intergenic |
| GAGTGTGCCGTTGACTGACA+TGG | 0.602740 | 8.4:+62852728 | None:intergenic |
| CCGATGGCGAAACAATTCGC+TGG | 0.602854 | 8.4:-62852815 | MS.gene63692:CDS |
| CACTCTTGGAGAGCCCAAAG+AGG | 0.605171 | 8.4:-62853108 | MS.gene63692:CDS |
| AAGAGCTTCAGTTATTATCA+CGG | 0.616423 | 8.4:-62852185 | MS.gene63692:CDS |
| GCCGTTGACTGACATGGCGA+TGG | 0.617587 | 8.4:+62852734 | None:intergenic |
| TCGCTGGCTCCTCGAACACG+CGG | 0.627039 | 8.4:-62852799 | MS.gene63692:CDS |
| TCAAGCCCAAGCCCAAACCC+AGG | 0.628129 | 8.4:-62852985 | MS.gene63692:CDS |
| GCCATCGCCATGTCAGTCAA+CGG | 0.630285 | 8.4:-62852735 | MS.gene63692:CDS |
| AGACCGTCACACAAAAGTCG+AGG | 0.630312 | 8.4:-62852916 | MS.gene63692:CDS |
| TCCAGCTAGAGCTACAGTGA+TGG | 0.641074 | 8.4:-62852277 | MS.gene63692:CDS |
| GACCGTCACACAAAAGTCGA+GGG | 0.645442 | 8.4:-62852915 | MS.gene63692:CDS |
| GAACTCGGACATAAGTCCGA+TGG | 0.654955 | 8.4:-62852831 | MS.gene63692:CDS |
| ACCGGTTGAAACAGAAACGG+TGG | 0.684445 | 8.4:+62852581 | None:intergenic |
| TGACCATGCACGTGCCACCG+GGG | 0.730870 | 8.4:-62853043 | MS.gene63692:CDS |
| ATGGACATAGGTATCCCCGG+TGG | 0.809498 | 8.4:+62853029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTCTTTTGAATTGTTTGT+TGG | + | chr8.4:62852361-62852380 | None:intergenic | 25.0% |
| !! | TCTCTTTTGAATTGTTTGTT+GGG | + | chr8.4:62852360-62852379 | None:intergenic | 25.0% |
| AAGAGCTTCAGTTATTATCA+CGG | - | chr8.4:62853122-62853141 | MS.gene63692:CDS | 30.0% | |
| AATTCAGTTACCACAAAACA+TGG | - | chr8.4:62852823-62852842 | MS.gene63692:CDS | 30.0% | |
| TGTGTTTGTGTTTATGTTTG+AGG | + | chr8.4:62852762-62852781 | None:intergenic | 30.0% | |
| ! | GATGTTGAGAGATTTTTCAT+TGG | - | chr8.4:62853084-62853103 | MS.gene63692:CDS | 30.0% |
| ! | GTTTGAGGTTGTTATTAAAC+CGG | + | chr8.4:62852747-62852766 | None:intergenic | 30.0% |
| ! | TTTTGTGGTAACTGAATTGT+GGG | + | chr8.4:62852821-62852840 | None:intergenic | 30.0% |
| !! | AAAAACTGTGGTTGATTTGT+TGG | + | chr8.4:62852911-62852930 | None:intergenic | 30.0% |
| !! | ACGAAAAAAGTATTTCCGTT+TGG | + | chr8.4:62852884-62852903 | None:intergenic | 30.0% |
| !!! | TCAACCACAGTTTTTTACAT+TGG | - | chr8.4:62852916-62852935 | MS.gene63692:CDS | 30.0% |
| AACCATCGAAGAAACAAAAC+CGG | + | chr8.4:62852954-62852973 | None:intergenic | 35.0% | |
| ACAAAACATGGTTCCTGTAT+GGG | - | chr8.4:62852835-62852854 | MS.gene63692:CDS | 35.0% | |
| ACCGGAAATAGAAGATGTAT+CGG | - | chr8.4:62852223-62852242 | MS.gene63692:CDS | 35.0% | |
| AGAAACATTGATCTCACTCT+TGG | - | chr8.4:62852185-62852204 | MS.gene63692:CDS | 35.0% | |
| CTAGCCAATGTAAAAAACTG+TGG | + | chr8.4:62852923-62852942 | None:intergenic | 35.0% | |
| GAAGAAACAAAACCGGTTAT+TGG | + | chr8.4:62852947-62852966 | None:intergenic | 35.0% | |
| GTTGTTGAGGAATTAGGTTT+AGG | + | chr8.4:62852799-62852818 | None:intergenic | 35.0% | |
| TAAACCGGTTGAAACAGAAA+CGG | + | chr8.4:62852732-62852751 | None:intergenic | 35.0% | |
| ! | CGTTTACGTTTCTTTTTCTC+AGG | + | chr8.4:62852671-62852690 | None:intergenic | 35.0% |
| ! | CTTTTTCTCAGGTGATTCAT+CGG | + | chr8.4:62852660-62852679 | None:intergenic | 35.0% |
| ! | GCTTGTTGAACTTGAATAAC+TGG | + | chr8.4:62852980-62852999 | None:intergenic | 35.0% |
| ! | GTTTTGTGGTAACTGAATTG+TGG | + | chr8.4:62852822-62852841 | None:intergenic | 35.0% |
| ! | TGGTTCTTGATTAGGGTTTT+TGG | + | chr8.4:62852627-62852646 | None:intergenic | 35.0% |
| !! | GTTGGTTTGGTTCTTGATTA+GGG | + | chr8.4:62852634-62852653 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGGTTCTTGATT+AGG | + | chr8.4:62852635-62852654 | None:intergenic | 35.0% |
| !!! | TCTTGATTAGGGTTTTTGGT+TGG | + | chr8.4:62852623-62852642 | None:intergenic | 35.0% |
| CACAAAACATGGTTCCTGTA+TGG | - | chr8.4:62852834-62852853 | MS.gene63692:CDS | 40.0% | |
| GCCGATACATCTTCTATTTC+CGG | + | chr8.4:62852227-62852246 | None:intergenic | 40.0% | |
| TCAAACGCTGTTGTACCAAA+CGG | - | chr8.4:62852866-62852885 | MS.gene63692:CDS | 40.0% | |
| TCTATTTCCGGTTCCTCTTT+GGG | + | chr8.4:62852215-62852234 | None:intergenic | 40.0% | |
| TTCTATTTCCGGTTCCTCTT+TGG | + | chr8.4:62852216-62852235 | None:intergenic | 40.0% | |
| TTTGGTACAACAGCGTTTGA+TGG | + | chr8.4:62852866-62852885 | None:intergenic | 40.0% | |
| ! | AACTGAATTGTGGGTTGTTG+AGG | + | chr8.4:62852812-62852831 | None:intergenic | 40.0% |
| ! | ACATTGGCTAGACCAATAAC+CGG | - | chr8.4:62852932-62852951 | MS.gene63692:CDS | 40.0% |
| ! | CATACAGGAACCATGTTTTG+TGG | + | chr8.4:62852836-62852855 | None:intergenic | 40.0% |
| ! | GATTCATCGGATTGTTGGTT+TGG | + | chr8.4:62852647-62852666 | None:intergenic | 40.0% |
| ! | TCTACGTAAGCACTGTTTGA+AGG | + | chr8.4:62852695-62852714 | None:intergenic | 40.0% |
| ! | TTGTGGGTTGTTGAGGAATT+AGG | + | chr8.4:62852805-62852824 | None:intergenic | 40.0% |
| ! | TTTGATGGTATAGCCCATAC+AGG | + | chr8.4:62852851-62852870 | None:intergenic | 40.0% |
| ! | TTTTGTGTGACGGTCTTTTG+TGG | + | chr8.4:62852387-62852406 | None:intergenic | 40.0% |
| !! | TTGTTGACTTGCATGGACAT+AGG | + | chr8.4:62852293-62852312 | None:intergenic | 40.0% |
| !!! | AACCGGTTTTGTTTCTTCGA+TGG | - | chr8.4:62852949-62852968 | MS.gene63692:CDS | 40.0% |
| !!! | ATTAGGGTTTTTGGTTGGTG+AGG | + | chr8.4:62852618-62852637 | None:intergenic | 40.0% |
| ACCACCGTTTCTGTTTCAAC+CGG | - | chr8.4:62852725-62852744 | MS.gene63692:CDS | 45.0% | |
| CAGGTGATTCATCGGATTGT+TGG | + | chr8.4:62852652-62852671 | None:intergenic | 45.0% | |
| CATGCAAGTCAACAAAGCCT+TGG | - | chr8.4:62852298-62852317 | MS.gene63692:CDS | 45.0% | |
| ! | CTAGCTGGAGATTTTGTTGC+TGG | + | chr8.4:62853019-62853038 | None:intergenic | 45.0% |
| ! | TGTTTGTTGGGCTTGAGCTT+GGG | + | chr8.4:62852348-62852367 | None:intergenic | 45.0% |
| ! | TTGTTTGTTGGGCTTGAGCT+TGG | + | chr8.4:62852349-62852368 | None:intergenic | 45.0% |
| !! | CAAGGCTTTGTTGACTTGCA+TGG | + | chr8.4:62852300-62852319 | None:intergenic | 45.0% |
| !!! | TTTTGGTTGGTGAGGTGGTT+GGG | + | chr8.4:62852610-62852629 | None:intergenic | 45.0% |
| !!! | TTTTTGGTTGGTGAGGTGGT+TGG | + | chr8.4:62852611-62852630 | None:intergenic | 45.0% |
| AAAGATCCGAGCTGCACATG+TGG | + | chr8.4:62852444-62852463 | None:intergenic | 50.0% | |
| ACCGGTTGAAACAGAAACGG+TGG | + | chr8.4:62852729-62852748 | None:intergenic | 50.0% | |
| AGACCGTCACACAAAAGTCG+AGG | - | chr8.4:62852391-62852410 | MS.gene63692:CDS | 50.0% | |
| CCAGCGAATTGTTTCGCCAT+CGG | + | chr8.4:62852495-62852514 | None:intergenic | 50.0% | |
| CGGACTTATGTCCGAGTTCT+CGG | + | chr8.4:62852475-62852494 | None:intergenic | 50.0% | |
| GAACTCGGACATAAGTCCGA+TGG | - | chr8.4:62852476-62852495 | MS.gene63692:CDS | 50.0% | |
| GACCGTCACACAAAAGTCGA+GGG | - | chr8.4:62852392-62852411 | MS.gene63692:CDS | 50.0% | |
| GGACTTATGTCCGAGTTCTC+GGG | + | chr8.4:62852474-62852493 | None:intergenic | 50.0% | |
| TCCAGCTAGAGCTACAGTGA+TGG | - | chr8.4:62853030-62853049 | MS.gene63692:CDS | 50.0% | |
| TGCATGGACATAGGTATCCC+CGG | + | chr8.4:62852284-62852303 | None:intergenic | 50.0% | |
| TTTCAGCTGACCCGAGAACT+CGG | - | chr8.4:62852461-62852480 | MS.gene63692:CDS | 50.0% | |
| ! | GACCCTCGACTTTTGTGTGA+CGG | + | chr8.4:62852397-62852416 | None:intergenic | 50.0% |
| ! | GTACTTGCTGCAACTGTGCT+TGG | + | chr8.4:62853058-62853077 | None:intergenic | 50.0% |
| !!! | AGGGTTTTTGGTTGGTGAGG+TGG | + | chr8.4:62852615-62852634 | None:intergenic | 50.0% |
| ATGGACATAGGTATCCCCGG+TGG | + | chr8.4:62852281-62852300 | None:intergenic | 55.0% | |
| CACACAAAAGTCGAGGGTCG+AGG | - | chr8.4:62852398-62852417 | MS.gene63692:CDS | 55.0% | |
| CACTCTTGGAGAGCCCAAAG+AGG | - | chr8.4:62852199-62852218 | MS.gene63692:CDS | 55.0% | |
| CCGATGGCGAAACAATTCGC+TGG | - | chr8.4:62852492-62852511 | MS.gene63692:CDS | 55.0% | |
| CTGCACATGTGGCAGGCATT+CGG | + | chr8.4:62852433-62852452 | None:intergenic | 55.0% | |
| GCCATCGCCATGTCAGTCAA+CGG | - | chr8.4:62852572-62852591 | MS.gene63692:CDS | 55.0% | |
| GTTGACTGACATGGCGATGG+CGG | + | chr8.4:62852573-62852592 | None:intergenic | 55.0% | |
| TGGAGAGCCCAAAGAGGAAC+CGG | - | chr8.4:62852205-62852224 | MS.gene63692:CDS | 55.0% | |
| TGGCAGGCATTCGGATCCTT+CGG | + | chr8.4:62852424-62852443 | None:intergenic | 55.0% | |
| TTGACTGACATGGCGATGGC+GGG | + | chr8.4:62852572-62852591 | None:intergenic | 55.0% | |
| TTGAGCTTGGGCCTGGGTTT+GGG | + | chr8.4:62852336-62852355 | None:intergenic | 55.0% | |
| TTGGGCTTGGGCTTGAACCA+AGG | + | chr8.4:62852318-62852337 | None:intergenic | 55.0% | |
| ! | GAGTGTGCCGTTGACTGACA+TGG | + | chr8.4:62852582-62852601 | None:intergenic | 55.0% |
| !! | GCCATCACTGTAGCTCTAGC+TGG | + | chr8.4:62853034-62853053 | None:intergenic | 55.0% |
| ATCATTGCCGCCACCGGAAC+CGG | - | chr8.4:62852539-62852558 | MS.gene63692:CDS | 60.0% | |
| ATCCGAGCTGCACATGTGGC+AGG | + | chr8.4:62852440-62852459 | None:intergenic | 60.0% | |
| ATGACCATGCACGTGCCACC+GGG | - | chr8.4:62852263-62852282 | MS.gene63692:CDS | 60.0% | |
| CCAGCTATCATTGCCGCCAC+CGG | - | chr8.4:62852533-62852552 | MS.gene63692:CDS | 60.0% | |
| CTTGAGCTTGGGCCTGGGTT+TGG | + | chr8.4:62852337-62852356 | None:intergenic | 60.0% | |
| GATGACCATGCACGTGCCAC+CGG | - | chr8.4:62852262-62852281 | MS.gene63692:CDS | 60.0% | |
| GGTGGCACGTGCATGGTCAT+CGG | + | chr8.4:62852263-62852282 | None:intergenic | 60.0% | |
| TCAAGCCCAAGCCCAAACCC+AGG | - | chr8.4:62852322-62852341 | MS.gene63692:CDS | 60.0% | |
| TGACTGACATGGCGATGGCG+GGG | + | chr8.4:62852571-62852590 | None:intergenic | 60.0% | |
| TGCCTGCCACATGTGCAGCT+CGG | - | chr8.4:62852435-62852454 | MS.gene63692:CDS | 60.0% | |
| TTGGGCCTGGGTTTGGGCTT+GGG | + | chr8.4:62852330-62852349 | None:intergenic | 60.0% | |
| TTGGGCTTGAGCTTGGGCCT+GGG | + | chr8.4:62852342-62852361 | None:intergenic | 60.0% | |
| ! | GCCGTTGACTGACATGGCGA+TGG | + | chr8.4:62852576-62852595 | None:intergenic | 60.0% |
| AAGTCGAGGGTCGAGGCCGA+AGG | - | chr8.4:62852405-62852424 | MS.gene63692:CDS | 65.0% | |
| CTTGGGCCTGGGTTTGGGCT+TGG | + | chr8.4:62852331-62852350 | None:intergenic | 65.0% | |
| GTTGGGCTTGAGCTTGGGCC+TGG | + | chr8.4:62852343-62852362 | None:intergenic | 65.0% | |
| TATCCCCGGTGGCACGTGCA+TGG | + | chr8.4:62852270-62852289 | None:intergenic | 65.0% | |
| TGACCATGCACGTGCCACCG+GGG | - | chr8.4:62852264-62852283 | MS.gene63692:CDS | 65.0% | |
| ! | CCGGTGGCGGCAATGATAGC+TGG | + | chr8.4:62852536-62852555 | None:intergenic | 65.0% |
| ! | TAGCTGGCTCCGCGTGTTCG+AGG | + | chr8.4:62852520-62852539 | None:intergenic | 65.0% |
| !! | TCGCTGGCTCCTCGAACACG+CGG | - | chr8.4:62852508-62852527 | MS.gene63692:CDS | 65.0% |
| !! | GACTGTGCCGGTTCCGGTGG+CGG | + | chr8.4:62852549-62852568 | None:intergenic | 70.0% |
| !! | GGCGATGGCGGGGACTGTGC+CGG | + | chr8.4:62852561-62852580 | None:intergenic | 75.0% |
| !! | GGCGGGGACTGTGCCGGTTC+CGG | + | chr8.4:62852555-62852574 | None:intergenic | 75.0% |
| !! | GGGGACTGTGCCGGTTCCGG+TGG | + | chr8.4:62852552-62852571 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 62852167 | 62853162 | 62852167 | ID=MS.gene63692 |
| chr8.4 | mRNA | 62852167 | 62853162 | 62852167 | ID=MS.gene63692.t1;Parent=MS.gene63692 |
| chr8.4 | exon | 62852167 | 62853162 | 62852167 | ID=MS.gene63692.t1.exon1;Parent=MS.gene63692.t1 |
| chr8.4 | CDS | 62852167 | 62853162 | 62852167 | ID=cds.MS.gene63692.t1;Parent=MS.gene63692.t1 |
| Gene Sequence |
| Protein sequence |
