Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63791.t1 | AET00566.2 | 90.3 | 277 | 23 | 1 | 1 | 277 | 138 | 410 | 1.90E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63791.t1 | Q6IP65 | 51.7 | 265 | 121 | 2 | 35 | 299 | 28 | 285 | 4.8e-67 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63791.t1 | G7K8L3 | 90.3 | 277 | 23 | 1 | 1 | 277 | 138 | 410 | 1.4e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63791.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63791.t1 | MTR_5g093460 | 89.928 | 278 | 24 | 1 | 1 | 278 | 138 | 411 | 1.44e-180 | 505 |
| MS.gene63791.t1 | MTR_5g093460 | 64.516 | 155 | 43 | 2 | 26 | 172 | 1 | 151 | 1.97e-54 | 183 |
| MS.gene63791.t1 | MTR_3g018640 | 63.504 | 274 | 97 | 1 | 1 | 274 | 9 | 279 | 1.68e-113 | 330 |
| MS.gene63791.t1 | MTR_8g106940 | 56.856 | 299 | 122 | 2 | 1 | 299 | 9 | 300 | 1.39e-110 | 323 |
| MS.gene63791.t1 | MTR_3g053170 | 58.974 | 273 | 102 | 3 | 30 | 302 | 26 | 288 | 6.11e-105 | 308 |
| MS.gene63791.t1 | MTR_6g065170 | 56.250 | 304 | 119 | 3 | 1 | 299 | 9 | 303 | 1.46e-104 | 308 |
| MS.gene63791.t1 | MTR_1g056470 | 59.336 | 241 | 93 | 2 | 13 | 252 | 17 | 253 | 4.19e-95 | 282 |
| MS.gene63791.t1 | MTR_1g043540 | 65.289 | 121 | 41 | 1 | 134 | 254 | 6 | 125 | 6.16e-45 | 149 |
| MS.gene63791.t1 | MTR_1g043500 | 62.903 | 62 | 22 | 1 | 191 | 251 | 3 | 64 | 4.68e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63791.t1 | AT3G20800 | 57.353 | 272 | 109 | 2 | 26 | 297 | 35 | 299 | 1.05e-101 | 301 |
| MS.gene63791.t1 | AT5G12980 | 53.285 | 274 | 121 | 2 | 30 | 303 | 35 | 301 | 5.04e-93 | 278 |
| MS.gene63791.t1 | AT2G32550 | 31.034 | 232 | 150 | 4 | 49 | 272 | 31 | 260 | 1.11e-27 | 108 |
| MS.gene63791.t1 | AT2G32550 | 30.451 | 266 | 171 | 7 | 18 | 272 | 37 | 299 | 4.09e-27 | 108 |
| MS.gene63791.t1 | AT2G32550 | 29.756 | 205 | 136 | 3 | 76 | 272 | 1 | 205 | 6.85e-22 | 92.0 |
Find 56 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGACAATTGATGAAAT+TGG | 0.182381 | 5.3:+75191086 | None:intergenic |
| ATTTCAGATGACGTCATTTC+AGG | 0.232530 | 5.3:-75193805 | MS.gene63791:intron |
| CCTTTATTGTGGAATTCTTT+TGG | 0.239207 | 5.3:-75193774 | MS.gene63791:CDS |
| TATGAGCAGTGGTGCTAAAC+TGG | 0.287121 | 5.3:+75194720 | None:intergenic |
| TCCACTATGCTTGGGTTGTA+TGG | 0.297190 | 5.3:-75191619 | MS.gene63791:CDS |
| CGATGTTCTTGCGCTACTTC+TGG | 0.299500 | 5.3:-75192982 | MS.gene63791:intron |
| AAGGAAACTCATGACTTCTT+TGG | 0.319816 | 5.3:+75191659 | None:intergenic |
| CTTGGTAGTCTTGGAGTCAT+TGG | 0.346879 | 5.3:-75192423 | MS.gene63791:CDS |
| CTTCATTTGTAGCTCCTCTC+AGG | 0.352750 | 5.3:-75194751 | MS.gene63791:CDS |
| CCAAAAGAATTCCACAATAA+AGG | 0.356330 | 5.3:+75193774 | None:intergenic |
| AGAGCATTTGCTCTTAGATC+TGG | 0.364235 | 5.3:+75194656 | None:intergenic |
| TGAAATAATTCCACTATGCT+TGG | 0.366345 | 5.3:-75191628 | MS.gene63791:CDS |
| TTGGAATCTTTGAGAATGTC+TGG | 0.372338 | 5.3:+75191105 | None:intergenic |
| TTAAATTACTTGTCGTTTGA+AGG | 0.381214 | 5.3:+75192466 | None:intergenic |
| AGGAATGACATCTTTGTATC+CGG | 0.390087 | 5.3:+75192795 | None:intergenic |
| AAAATGTTGTTAGACGTTGA+TGG | 0.395577 | 5.3:-75191401 | MS.gene63791:CDS |
| TCTTGGAGTCATTGGTGCTT+TGG | 0.402629 | 5.3:-75192415 | MS.gene63791:CDS |
| TTACTTGTCGTTTGAAGGAA+TGG | 0.412465 | 5.3:+75192471 | None:intergenic |
| GGTGGGTTCAAGGAATTCTA+AGG | 0.424215 | 5.3:-75190520 | MS.gene63791:intron |
| GTTGTTAGACGTTGATGGTT+TGG | 0.426908 | 5.3:-75191396 | MS.gene63791:CDS |
| CTCGTTTGTCTGAACATAGC+AGG | 0.439986 | 5.3:-75191253 | MS.gene63791:intron |
| CACATTCGAGTTGATTGTGT+TGG | 0.440645 | 5.3:+75193005 | None:intergenic |
| GAAATAATTCCACTATGCTT+GGG | 0.444586 | 5.3:-75191627 | MS.gene63791:CDS |
| CATAGTGGAATTATTTCACT+TGG | 0.458939 | 5.3:+75191633 | None:intergenic |
| TGGTTGAGGCTTGGTAGTCT+TGG | 0.464688 | 5.3:-75192432 | MS.gene63791:CDS |
| TGTGTTGGAGTAAGATTTAG+TGG | 0.471165 | 5.3:+75193020 | None:intergenic |
| TGCTCTTCGTGTGCTTTCCA+AGG | 0.477321 | 5.3:-75194639 | MS.gene63791:intron |
| GAATTATTTCACTTGGAAGA+AGG | 0.485164 | 5.3:+75191640 | None:intergenic |
| TAACACAATATGAGTGGTTG+AGG | 0.491507 | 5.3:-75192446 | MS.gene63791:CDS |
| TTCAGGAAGATTCAACAACT+TGG | 0.491745 | 5.3:-75190332 | MS.gene63791:intron |
| GAAAATTGACATTACCATTG+AGG | 0.492991 | 5.3:+75192775 | None:intergenic |
| GTGTCACATAGGTGGGTTCA+AGG | 0.493455 | 5.3:-75190530 | MS.gene63791:CDS |
| AGGAGCTTGCACCTTTATTG+TGG | 0.506558 | 5.3:-75193785 | MS.gene63791:CDS |
| TTCATTTGTAGCTCCTCTCA+GGG | 0.519648 | 5.3:-75194750 | MS.gene63791:CDS |
| TAAAGAAGTGTCACATAGGT+GGG | 0.529473 | 5.3:-75190537 | MS.gene63791:CDS |
| AGATTTAGTGGTGAAAGAGT+AGG | 0.532575 | 5.3:+75193032 | None:intergenic |
| AACGCCTTGTTATTGAACTT+AGG | 0.532607 | 5.3:-75194682 | MS.gene63791:CDS |
| CAATATGAGTGGTTGAGGCT+TGG | 0.532866 | 5.3:-75192441 | MS.gene63791:CDS |
| GTTGATGGTTTGGCTTATGT+TGG | 0.552096 | 5.3:-75191386 | MS.gene63791:CDS |
| ACAAAGATGTCATTCCTCAA+TGG | 0.552200 | 5.3:-75192789 | MS.gene63791:intron |
| TCCATACAACCCAAGCATAG+TGG | 0.555182 | 5.3:+75191618 | None:intergenic |
| TAGCACCACTGCTCATATGA+TGG | 0.556679 | 5.3:-75194714 | MS.gene63791:CDS |
| GGAATGACATCTTTGTATCC+GGG | 0.558198 | 5.3:+75192796 | None:intergenic |
| AGTCATTGGTGCTTTGGTGA+AGG | 0.559413 | 5.3:-75192409 | MS.gene63791:intron |
| TTAAAGAAGTGTCACATAGG+TGG | 0.578021 | 5.3:-75190538 | MS.gene63791:CDS |
| AGGAAGATTCAACAACTTGG+AGG | 0.584872 | 5.3:-75190329 | MS.gene63791:CDS |
| ATGAGCAGTGGTGCTAAACT+GGG | 0.605309 | 5.3:+75194721 | None:intergenic |
| GTAATTTAACACAATATGAG+TGG | 0.620131 | 5.3:-75192452 | MS.gene63791:CDS |
| AAATTAAAGAAGTGTCACAT+AGG | 0.625388 | 5.3:-75190541 | MS.gene63791:CDS |
| GTCCACCATCATATGAGCAG+TGG | 0.629949 | 5.3:+75194709 | None:intergenic |
| CACCACTGCTCATATGATGG+TGG | 0.655595 | 5.3:-75194711 | MS.gene63791:CDS |
| GATTCCTAAGTTCAATAACA+AGG | 0.670050 | 5.3:+75194678 | None:intergenic |
| ATAGTGTGTAGCATCTCACC+CGG | 0.679113 | 5.3:-75192814 | MS.gene63791:intron |
| AACTGGGTAGAAGCCCTGAG+AGG | 0.696390 | 5.3:+75194737 | None:intergenic |
| GGGTTGTATGGAAATCGACA+AGG | 0.706182 | 5.3:-75191607 | MS.gene63791:CDS |
| ATTATAAGCTTCAACAAACG+AGG | 0.715153 | 5.3:+75191287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAATATATATTAAAT+TGG | - | chr5.3:75194621-75194640 | MS.gene63791:intron | 0.0% |
| !!! | TTTATATTTTAAATTTTTAT+TGG | + | chr5.3:75194349-75194368 | None:intergenic | 0.0% |
| !! | AAGATCTATAAATATTTAAA+AGG | + | chr5.3:75191439-75191458 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATAATAAATCAG+TGG | + | chr5.3:75194225-75194244 | None:intergenic | 10.0% |
| !!! | GAAACTTTTATATTAAAAAT+TGG | - | chr5.3:75191204-75191223 | MS.gene63791:intron | 10.0% |
| !!! | TATTTTCACAATTAAAAAAA+TGG | - | chr5.3:75191744-75191763 | MS.gene63791:intron | 10.0% |
| !! | AACTTCTTTCATATTAAAAT+AGG | - | chr5.3:75193937-75193956 | MS.gene63791:intron | 15.0% |
| !! | AATTATCATTAATGATATGT+AGG | - | chr5.3:75192429-75192448 | MS.gene63791:CDS | 15.0% |
| !! | AATTCTTTATAATCAGATTT+AGG | - | chr5.3:75192470-75192489 | MS.gene63791:CDS | 15.0% |
| !! | ACTATTTCAGATATTTAAAT+TGG | - | chr5.3:75194670-75194689 | MS.gene63791:CDS | 15.0% |
| !! | ACTTCTTTCATATTAAAATA+GGG | - | chr5.3:75193938-75193957 | MS.gene63791:intron | 15.0% |
| !! | AGTTATCAAATTAAATATTG+TGG | + | chr5.3:75192394-75192413 | None:intergenic | 15.0% |
| !! | ATAAAAAGAGAATATAGTTA+CGG | - | chr5.3:75192782-75192801 | MS.gene63791:intron | 15.0% |
| !! | ATAATAATGTGATAGTTAAT+AGG | - | chr5.3:75191032-75191051 | MS.gene63791:intron | 15.0% |
| !! | ATATATTGAAATTATTTCCT+GGG | + | chr5.3:75192040-75192059 | None:intergenic | 15.0% |
| !! | ATTAAAAAGAAGAAATAGTT+AGG | + | chr5.3:75193301-75193320 | None:intergenic | 15.0% |
| !! | ATTAAATACACATTTCATTT+AGG | - | chr5.3:75194049-75194068 | MS.gene63791:intron | 15.0% |
| !! | ATTCATAAACTAAAAAAAGA+AGG | + | chr5.3:75191635-75191654 | None:intergenic | 15.0% |
| !! | GAAAAATTTACCTTAAAAAT+AGG | - | chr5.3:75191100-75191119 | MS.gene63791:CDS | 15.0% |
| !! | TGACAAATTATAGATAAATA+GGG | + | chr5.3:75193367-75193386 | None:intergenic | 15.0% |
| !! | TTCATAAACTAAAAAAAGAA+GGG | + | chr5.3:75191634-75191653 | None:intergenic | 15.0% |
| !! | TTGACAAATTATAGATAAAT+AGG | + | chr5.3:75193368-75193387 | None:intergenic | 15.0% |
| !!! | AAGTTTTAATGGAAATTATA+AGG | + | chr5.3:75193019-75193038 | None:intergenic | 15.0% |
| !!! | ACTATATTCTCTTTTTATTA+TGG | + | chr5.3:75192780-75192799 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTTGAATTGTATT+TGG | - | chr5.3:75192151-75192170 | MS.gene63791:intron | 15.0% |
| !!! | ATTGACTATTTTAAAGTTTA+TGG | - | chr5.3:75192926-75192945 | MS.gene63791:intron | 15.0% |
| !!! | ATTGTTGATAACAATTTTAA+TGG | - | chr5.3:75193071-75193090 | MS.gene63791:intron | 15.0% |
| !!! | TCATTTTTTATTTGTTTCAT+GGG | - | chr5.3:75190506-75190525 | MS.gene63791:intron | 15.0% |
| !!! | TTCATTTTTTATTTGTTTCA+TGG | - | chr5.3:75190505-75190524 | MS.gene63791:intron | 15.0% |
| !!! | TTCTTTATAGATAACTTTTT+TGG | + | chr5.3:75191080-75191099 | None:intergenic | 15.0% |
| !! | AAAAAAATGGACATGATTAT+GGG | - | chr5.3:75191757-75191776 | MS.gene63791:intron | 20.0% |
| !! | AAAAAACTATTTACTTCTAC+CGG | - | chr5.3:75192967-75192986 | MS.gene63791:intron | 20.0% |
| !! | AAAAATTATCATTCTGCAAT+TGG | - | chr5.3:75191526-75191545 | MS.gene63791:intron | 20.0% |
| !! | AAAACATATTATGACATATC+AGG | + | chr5.3:75194087-75194106 | None:intergenic | 20.0% |
| !! | AAGATGTTTAATCTAGAAAA+AGG | + | chr5.3:75190653-75190672 | None:intergenic | 20.0% |
| !! | ATCAACAATTAATTGATTGT+GGG | + | chr5.3:75193060-75193079 | None:intergenic | 20.0% |
| !! | ATGAGTTTGAAAAACATTAT+AGG | + | chr5.3:75191237-75191256 | None:intergenic | 20.0% |
| !! | GATATATTGAAATTATTTCC+TGG | + | chr5.3:75192041-75192060 | None:intergenic | 20.0% |
| !! | GGAAACACATAAATATAAAT+TGG | + | chr5.3:75191693-75191712 | None:intergenic | 20.0% |
| !! | GTTCTATGAAAATTCATATA+AGG | - | chr5.3:75193210-75193229 | MS.gene63791:intron | 20.0% |
| !! | TAAAAAAATGGACATGATTA+TGG | - | chr5.3:75191756-75191775 | MS.gene63791:intron | 20.0% |
| !! | TATCAACAATTAATTGATTG+TGG | + | chr5.3:75193061-75193080 | None:intergenic | 20.0% |
| !! | TGAATATCATGTATAACAAA+AGG | + | chr5.3:75193403-75193422 | None:intergenic | 20.0% |
| !! | TTGTTTATATGAATTTGACA+TGG | - | chr5.3:75193570-75193589 | MS.gene63791:intron | 20.0% |
| !!! | AAAATGCTCTAAAACTAAAT+TGG | + | chr5.3:75193552-75193571 | None:intergenic | 20.0% |
| !!! | ACATCTTTGGTTTAATTTTT+CGG | - | chr5.3:75190666-75190685 | MS.gene63791:intron | 20.0% |
| !!! | ATTTCCATTAAAACTTTTAG+TGG | - | chr5.3:75193023-75193042 | MS.gene63791:CDS | 20.0% |
| !!! | GATATTGTTTTGATTTTTTC+AGG | - | chr5.3:75194743-75194762 | MS.gene63791:CDS | 20.0% |
| !!! | GTGTGTTTAATAAGTTTTAA+TGG | - | chr5.3:75192748-75192767 | MS.gene63791:intron | 20.0% |
| !!! | TGAAAATTCATATAAGGTTT+TGG | - | chr5.3:75193216-75193235 | MS.gene63791:intron | 20.0% |
| !!! | TTGATAACAATTTTAATGGT+CGG | - | chr5.3:75193075-75193094 | MS.gene63791:intron | 20.0% |
| !!! | TTTATAAATTTTATGCTAGC+AGG | + | chr5.3:75194444-75194463 | None:intergenic | 20.0% |
| !!! | TTTTAAAATAATTGTCCAAG+AGG | - | chr5.3:75191826-75191845 | MS.gene63791:intron | 20.0% |
| !!! | TTTTCCCATTCTTAATATAA+CGG | + | chr5.3:75192513-75192532 | None:intergenic | 20.0% |
| !!! | TTTTCTAGATTAAACATCTT+TGG | - | chr5.3:75190653-75190672 | MS.gene63791:intron | 20.0% |
| ! | AAAAAATGGACATGATTATG+GGG | - | chr5.3:75191758-75191777 | MS.gene63791:intron | 25.0% |
| ! | AAAATGAACAACAAACTGAA+AGG | + | chr5.3:75190493-75190512 | None:intergenic | 25.0% |
| ! | AAACTAAAAAAAGAAGGGAA+AGG | + | chr5.3:75191629-75191648 | None:intergenic | 25.0% |
| ! | ATAAAGTTGTATATCAATGC+AGG | - | chr5.3:75193648-75193667 | MS.gene63791:intron | 25.0% |
| ! | ATGAAGACAATTGATGAAAT+TGG | + | chr5.3:75194009-75194028 | None:intergenic | 25.0% |
| ! | ATGGAAATTATAAGGAATGA+TGG | + | chr5.3:75193011-75193030 | None:intergenic | 25.0% |
| ! | ATGTGATAGTTAATAGGATT+TGG | - | chr5.3:75191038-75191057 | MS.gene63791:intron | 25.0% |
| ! | CAAGAAAGAGATAATTAGAA+AGG | - | chr5.3:75190992-75191011 | MS.gene63791:intron | 25.0% |
| ! | GGTCACATATTTGATTATAT+TGG | - | chr5.3:75194642-75194661 | MS.gene63791:CDS | 25.0% |
| ! | GTAATTTAACACAATATGAG+TGG | - | chr5.3:75192640-75192659 | MS.gene63791:intron | 25.0% |
| ! | GTTCATTAATTAGTGTATCA+CGG | - | chr5.3:75190730-75190749 | MS.gene63791:intron | 25.0% |
| ! | TAGACCGTTATATTAAGAAT+GGG | - | chr5.3:75192506-75192525 | MS.gene63791:intron | 25.0% |
| ! | TATCAATTTACAATTGTACG+AGG | + | chr5.3:75191912-75191931 | None:intergenic | 25.0% |
| ! | TCACATTGAAAAGTAAAAGT+TGG | + | chr5.3:75191714-75191733 | None:intergenic | 25.0% |
| ! | TGTGAAACTAAATTTGACAA+TGG | - | chr5.3:75192831-75192850 | MS.gene63791:intron | 25.0% |
| ! | TTCATTAATTAGTGTATCAC+GGG | - | chr5.3:75190731-75190750 | MS.gene63791:intron | 25.0% |
| ! | TTGTTATACATGATATTCAC+AGG | - | chr5.3:75193404-75193423 | MS.gene63791:intron | 25.0% |
| ! | TTTACCTTAAAAATAGGACT+AGG | - | chr5.3:75191106-75191125 | MS.gene63791:CDS | 25.0% |
| !! | ATTAAATCTTGTTTCCTAAC+AGG | + | chr5.3:75191467-75191486 | None:intergenic | 25.0% |
| !! | TTAAATTACTTGTCGTTTGA+AGG | + | chr5.3:75192629-75192648 | None:intergenic | 25.0% |
| !!! | AAATTAAAGAAGTGTCACAT+AGG | - | chr5.3:75194551-75194570 | MS.gene63791:intron | 25.0% |
| !!! | AGTTTAGTTTTGTAAGATCA+AGG | - | chr5.3:75191870-75191889 | MS.gene63791:intron | 25.0% |
| !!! | GGAATTCTAAGGTATTTAAT+TGG | - | chr5.3:75194583-75194602 | MS.gene63791:intron | 25.0% |
| !!! | GTTTAGTTTTGTAAGATCAA+GGG | - | chr5.3:75191871-75191890 | MS.gene63791:intron | 25.0% |
| AAAATGTTGTTAGACGTTGA+TGG | - | chr5.3:75193691-75193710 | MS.gene63791:intron | 30.0% | |
| ACAAGTAAACCAAATCCTTA+GGG | - | chr5.3:75190533-75190552 | MS.gene63791:CDS | 30.0% | |
| AGATCAGTTTATATTCATCG+TGG | - | chr5.3:75193261-75193280 | MS.gene63791:intron | 30.0% | |
| ATAGATCTTTACTACCTGTT+AGG | - | chr5.3:75191450-75191469 | MS.gene63791:intron | 30.0% | |
| ATATGACAAGACCTGTTATA+TGG | - | chr5.3:75194142-75194161 | MS.gene63791:intron | 30.0% | |
| ATTATAAGCTTCAACAAACG+AGG | + | chr5.3:75193808-75193827 | None:intergenic | 30.0% | |
| CAGTGGTCATATTTACATTT+CGG | + | chr5.3:75194208-75194227 | None:intergenic | 30.0% | |
| CCAAAAGAATTCCACAATAA+AGG | + | chr5.3:75191321-75191340 | None:intergenic | 30.0% | |
| CTAAACTATGCAACTTAGAT+CGG | + | chr5.3:75191146-75191165 | None:intergenic | 30.0% | |
| GAAAATTGACATTACCATTG+AGG | + | chr5.3:75192320-75192339 | None:intergenic | 30.0% | |
| GAAATAATTCCACTATGCTT+GGG | - | chr5.3:75193465-75193484 | MS.gene63791:intron | 30.0% | |
| GAATTATTTCACTTGGAAGA+AGG | + | chr5.3:75193455-75193474 | None:intergenic | 30.0% | |
| GATCAGTTTATATTCATCGT+GGG | - | chr5.3:75193262-75193281 | MS.gene63791:intron | 30.0% | |
| GATTCCTAAGTTCAATAACA+AGG | + | chr5.3:75190417-75190436 | None:intergenic | 30.0% | |
| GTAGACCGTTATATTAAGAA+TGG | - | chr5.3:75192505-75192524 | MS.gene63791:intron | 30.0% | |
| TAAGTTTAGTGTTACACTTG+CGG | - | chr5.3:75194281-75194300 | MS.gene63791:intron | 30.0% | |
| TGAAATAATTCCACTATGCT+TGG | - | chr5.3:75193464-75193483 | MS.gene63791:intron | 30.0% | |
| TGCATGTGTCTTACTTATAT+TGG | - | chr5.3:75191500-75191519 | MS.gene63791:intron | 30.0% | |
| TGGCAAAACAACAATAATAG+AGG | + | chr5.3:75193532-75193551 | None:intergenic | 30.0% | |
| TTGAATCTATGTTGACATAG+AGG | + | chr5.3:75190600-75190619 | None:intergenic | 30.0% | |
| ! | CAATGGCTATTAGTTTAGAA+GGG | - | chr5.3:75194246-75194265 | MS.gene63791:intron | 30.0% |
| ! | CATAGTGGAATTATTTCACT+TGG | + | chr5.3:75193462-75193481 | None:intergenic | 30.0% |
| ! | CCTTTATTGTGGAATTCTTT+TGG | - | chr5.3:75191318-75191337 | MS.gene63791:CDS | 30.0% |
| ! | TCAATGGCTATTAGTTTAGA+AGG | - | chr5.3:75194245-75194264 | MS.gene63791:intron | 30.0% |
| ! | TTGCACATTTTTATGCTTCT+TGG | + | chr5.3:75190975-75190994 | None:intergenic | 30.0% |
| ! | TTTTATGAACTTGTGTTAGC+TGG | - | chr5.3:75190870-75190889 | MS.gene63791:intron | 30.0% |
| !! | AGCACCACTAAAAGTTTTAA+TGG | + | chr5.3:75193030-75193049 | None:intergenic | 30.0% |
| !! | AGTCTTGTTTGAATATGAAG+AGG | - | chr5.3:75194521-75194540 | MS.gene63791:intron | 30.0% |
| !!! | TGATCCTAGTCCTATTTTTA+AGG | + | chr5.3:75191113-75191132 | None:intergenic | 30.0% |
| AAGGAAACTCATGACTTCTT+TGG | + | chr5.3:75193436-75193455 | None:intergenic | 35.0% | |
| ACAAAGATGTCATTCCTCAA+TGG | - | chr5.3:75192303-75192322 | MS.gene63791:intron | 35.0% | |
| ACACTTGCGGTATTTGTATA+GGG | - | chr5.3:75194294-75194313 | MS.gene63791:intron | 35.0% | |
| AGATTTAGTGGTGAAAGAGT+AGG | + | chr5.3:75192063-75192082 | None:intergenic | 35.0% | |
| AGGAATGACATCTTTGTATC+CGG | + | chr5.3:75192300-75192319 | None:intergenic | 35.0% | |
| AGGTAGATTAGTAAGAACCT+TGG | + | chr5.3:75190473-75190492 | None:intergenic | 35.0% | |
| AGTTGTATATCAATGCAGGT+TGG | - | chr5.3:75193652-75193671 | MS.gene63791:intron | 35.0% | |
| ATATAAGTGCATGTTAGCTG+CGG | + | chr5.3:75192595-75192614 | None:intergenic | 35.0% | |
| ATTTCAGATGACGTCATTTC+AGG | - | chr5.3:75191287-75191306 | MS.gene63791:CDS | 35.0% | |
| CACAAGTAAACCAAATCCTT+AGG | - | chr5.3:75190532-75190551 | MS.gene63791:CDS | 35.0% | |
| GCATGATACACAAATCCATT+AGG | + | chr5.3:75194186-75194205 | None:intergenic | 35.0% | |
| GTAAATGCATGTGTAATTGC+CGG | + | chr5.3:75192989-75193008 | None:intergenic | 35.0% | |
| GTCTTCATGTAAGTACTTCT+TGG | - | chr5.3:75194021-75194040 | MS.gene63791:intron | 35.0% | |
| TAACACAATATGAGTGGTTG+AGG | - | chr5.3:75192646-75192665 | MS.gene63791:intron | 35.0% | |
| TACACTTGCGGTATTTGTAT+AGG | - | chr5.3:75194293-75194312 | MS.gene63791:intron | 35.0% | |
| TGTGTTGGAGTAAGATTTAG+TGG | + | chr5.3:75192075-75192094 | None:intergenic | 35.0% | |
| TTCAGGAAGATTCAACAACT+TGG | - | chr5.3:75194760-75194779 | MS.gene63791:CDS | 35.0% | |
| TTTCAATCTGATTGTGCTCT+TGG | - | chr5.3:75193152-75193171 | MS.gene63791:intron | 35.0% | |
| ! | CGAGTAATGATATTTTTCCC+AGG | - | chr5.3:75192020-75192039 | MS.gene63791:intron | 35.0% |
| ! | GAAAAATATGCTGGTAGTGT+GGG | - | chr5.3:75191550-75191569 | MS.gene63791:intron | 35.0% |
| ! | GAGGAACTAACAGATTTTGA+TGG | + | chr5.3:75193513-75193532 | None:intergenic | 35.0% |
| ! | TTACTTGTCGTTTGAAGGAA+TGG | + | chr5.3:75192624-75192643 | None:intergenic | 35.0% |
| ! | TTGGAATCTTTGAGAATGTC+TGG | + | chr5.3:75193990-75194009 | None:intergenic | 35.0% |
| ! | TTTTAGCCACTGTCCTTTAT+CGG | - | chr5.3:75191579-75191598 | MS.gene63791:intron | 35.0% |
| !! | AACGCCTTGTTATTGAACTT+AGG | - | chr5.3:75190410-75190429 | MS.gene63791:intron | 35.0% |
| !! | ATATGAGAGAAGAGTGTTAG+AGG | + | chr5.3:75192251-75192270 | None:intergenic | 35.0% |
| !! | ATTTTAATGGTCGGTTGAGT+TGG | - | chr5.3:75193084-75193103 | MS.gene63791:intron | 35.0% |
| !! | CTTTTAGGTACACAACCTAA+TGG | - | chr5.3:75194168-75194187 | MS.gene63791:intron | 35.0% |
| !! | TAAAGAAGTGTCACATAGGT+GGG | - | chr5.3:75194555-75194574 | MS.gene63791:intron | 35.0% |
| !! | TGAAGGTATTACATCTTTGC+TGG | - | chr5.3:75192700-75192719 | MS.gene63791:intron | 35.0% |
| !! | TTAAAGAAGTGTCACATAGG+TGG | - | chr5.3:75194554-75194573 | MS.gene63791:intron | 35.0% |
| AAATGGACATGATTATGGGG+AGG | - | chr5.3:75191761-75191780 | MS.gene63791:intron | 40.0% | |
| AATGGACATGATTATGGGGA+GGG | - | chr5.3:75191762-75191781 | MS.gene63791:intron | 40.0% | |
| AGGAAGATTCAACAACTTGG+AGG | - | chr5.3:75194763-75194782 | MS.gene63791:CDS | 40.0% | |
| ATCACAACTCCCTAAGGATT+TGG | + | chr5.3:75190545-75190564 | None:intergenic | 40.0% | |
| ATTGATGAGCTAGTACCTCT+TGG | + | chr5.3:75191844-75191863 | None:intergenic | 40.0% | |
| CAAGATACTAACGCACAGAA+AGG | + | chr5.3:75191406-75191425 | None:intergenic | 40.0% | |
| CACTTGCGGTATTTGTATAG+GGG | - | chr5.3:75194295-75194314 | MS.gene63791:intron | 40.0% | |
| CCTAAAAGCCACCATATAAC+AGG | + | chr5.3:75194156-75194175 | None:intergenic | 40.0% | |
| GATTTGGATGAAAGCGACAA+TGG | - | chr5.3:75191054-75191073 | MS.gene63791:intron | 40.0% | |
| GCAATTGGCGAAAAATATGC+TGG | - | chr5.3:75191541-75191560 | MS.gene63791:intron | 40.0% | |
| GGAAAGGATGATAGTTACGA+AGG | + | chr5.3:75191613-75191632 | None:intergenic | 40.0% | |
| GGAATGACATCTTTGTATCC+GGG | + | chr5.3:75192299-75192318 | None:intergenic | 40.0% | |
| TGACAAGACCTGTTATATGG+TGG | - | chr5.3:75194145-75194164 | MS.gene63791:intron | 40.0% | |
| TTCATTTGTAGCTCCTCTCA+GGG | - | chr5.3:75190342-75190361 | MS.gene63791:intron | 40.0% | |
| TTTGTCTGAACATAGCAGGT+TGG | - | chr5.3:75193843-75193862 | MS.gene63791:intron | 40.0% | |
| ! | AGAGCATTTGCTCTTAGATC+TGG | + | chr5.3:75190439-75190458 | None:intergenic | 40.0% |
| ! | CCTGTTATATGGTGGCTTTT+AGG | - | chr5.3:75194153-75194172 | MS.gene63791:intron | 40.0% |
| ! | CGAAAAATATGCTGGTAGTG+TGG | - | chr5.3:75191549-75191568 | MS.gene63791:intron | 40.0% |
| ! | TAGAGTATCACAACTCCCTA+AGG | + | chr5.3:75190551-75190570 | None:intergenic | 40.0% |
| !! | CACATTCGAGTTGATTGTGT+TGG | + | chr5.3:75192090-75192109 | None:intergenic | 40.0% |
| !! | GTTGATGGTTTGGCTTATGT+TGG | - | chr5.3:75193706-75193725 | MS.gene63791:intron | 40.0% |
| !! | GTTGTTAGACGTTGATGGTT+TGG | - | chr5.3:75193696-75193715 | MS.gene63791:intron | 40.0% |
| AGGAGCTTGCACCTTTATTG+TGG | - | chr5.3:75191307-75191326 | MS.gene63791:CDS | 45.0% | |
| ATAGTGTGTAGCATCTCACC+CGG | - | chr5.3:75192278-75192297 | MS.gene63791:intron | 45.0% | |
| CAATATGAGTGGTTGAGGCT+TGG | - | chr5.3:75192651-75192670 | MS.gene63791:intron | 45.0% | |
| CTCGTTTGTCTGAACATAGC+AGG | - | chr5.3:75193839-75193858 | MS.gene63791:intron | 45.0% | |
| CTTCATTTGTAGCTCCTCTC+AGG | - | chr5.3:75190341-75190360 | MS.gene63791:intron | 45.0% | |
| GGGTTGTATGGAAATCGACA+AGG | - | chr5.3:75193485-75193504 | MS.gene63791:intron | 45.0% | |
| TAGCACCACTGCTCATATGA+TGG | - | chr5.3:75190378-75190397 | MS.gene63791:intron | 45.0% | |
| TCCATACAACCCAAGCATAG+TGG | + | chr5.3:75193477-75193496 | None:intergenic | 45.0% | |
| TGTCATCCGATAAAGGACAG+TGG | + | chr5.3:75191588-75191607 | None:intergenic | 45.0% | |
| ! | AGTCATTGGTGCTTTGGTGA+AGG | - | chr5.3:75192683-75192702 | MS.gene63791:intron | 45.0% |
| ! | ATGAGCAGTGGTGCTAAACT+GGG | + | chr5.3:75190374-75190393 | None:intergenic | 45.0% |
| ! | CTTGGTAGTCTTGGAGTCAT+TGG | - | chr5.3:75192669-75192688 | MS.gene63791:intron | 45.0% |
| ! | GGTGGGTTCAAGGAATTCTA+AGG | - | chr5.3:75194572-75194591 | MS.gene63791:intron | 45.0% |
| ! | TATGAGCAGTGGTGCTAAAC+TGG | + | chr5.3:75190375-75190394 | None:intergenic | 45.0% |
| ! | TCCACTATGCTTGGGTTGTA+TGG | - | chr5.3:75193473-75193492 | MS.gene63791:intron | 45.0% |
| ! | TCTTGGAGTCATTGGTGCTT+TGG | - | chr5.3:75192677-75192696 | MS.gene63791:intron | 45.0% |
| !! | GAAGGAGTGTCATCCGATAA+AGG | + | chr5.3:75191595-75191614 | None:intergenic | 45.0% |
| !! | ATTATAAAGAATTAATAATT+AGG | + | chr5.3:75192463-75192482 | None:intergenic | 5.0% |
| !! | TTATAAAGAATTAATAATTA+GGG | + | chr5.3:75192462-75192481 | None:intergenic | 5.0% |
| !! | TTTATTATTAAAAAATTCAA+TGG | - | chr5.3:75194229-75194248 | MS.gene63791:intron | 5.0% |
| !!! | TTTATAAATTTTATTATGTT+TGG | - | chr5.3:75194456-75194475 | MS.gene63791:intron | 5.0% |
| CACCACTGCTCATATGATGG+TGG | - | chr5.3:75190381-75190400 | MS.gene63791:intron | 50.0% | |
| CGATGTTCTTGCGCTACTTC+TGG | - | chr5.3:75192110-75192129 | MS.gene63791:intron | 50.0% | |
| GTCCACCATCATATGAGCAG+TGG | + | chr5.3:75190386-75190405 | None:intergenic | 50.0% | |
| TGCTCTTCGTGTGCTTTCCA+AGG | - | chr5.3:75190453-75190472 | MS.gene63791:intron | 50.0% | |
| ! | GTGTCACATAGGTGGGTTCA+AGG | - | chr5.3:75194562-75194581 | MS.gene63791:intron | 50.0% |
| ! | TGGTTGAGGCTTGGTAGTCT+TGG | - | chr5.3:75192660-75192679 | MS.gene63791:intron | 50.0% |
| AACTGGGTAGAAGCCCTGAG+AGG | + | chr5.3:75190358-75190377 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 75190322 | 75194792 | 75190322 | ID=MS.gene63791 |
| chr5.3 | mRNA | 75190322 | 75194792 | 75190322 | ID=MS.gene63791.t1;Parent=MS.gene63791 |
| chr5.3 | exon | 75194640 | 75194792 | 75194640 | ID=MS.gene63791.t1.exon1;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75194640 | 75194792 | 75194640 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75194126 | 75194137 | 75194126 | ID=MS.gene63791.t1.exon2;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75194126 | 75194137 | 75194126 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75193752 | 75193820 | 75193752 | ID=MS.gene63791.t1.exon3;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75193752 | 75193820 | 75193752 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75192983 | 75193072 | 75192983 | ID=MS.gene63791.t1.exon4;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75192983 | 75193072 | 75192983 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75192790 | 75192832 | 75192790 | ID=MS.gene63791.t1.exon5;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75192790 | 75192832 | 75192790 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75192410 | 75192516 | 75192410 | ID=MS.gene63791.t1.exon6;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75192410 | 75192516 | 75192410 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75191593 | 75191688 | 75191593 | ID=MS.gene63791.t1.exon7;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75191593 | 75191688 | 75191593 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75191254 | 75191444 | 75191254 | ID=MS.gene63791.t1.exon8;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75191254 | 75191444 | 75191254 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75191086 | 75191155 | 75191086 | ID=MS.gene63791.t1.exon9;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75191086 | 75191155 | 75191086 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75190521 | 75190573 | 75190521 | ID=MS.gene63791.t1.exon10;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75190521 | 75190573 | 75190521 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| chr5.3 | exon | 75190322 | 75190349 | 75190322 | ID=MS.gene63791.t1.exon11;Parent=MS.gene63791.t1 |
| chr5.3 | CDS | 75190322 | 75190349 | 75190322 | ID=cds.MS.gene63791.t1;Parent=MS.gene63791.t1 |
| Gene Sequence |
| Protein sequence |
