Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63908.t1 | AET00712.2 | 85.7 | 279 | 32 | 1 | 1 | 279 | 1 | 271 | 2.60E-127 | 464.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63908.t1 | Q9LG02 | 22.7 | 238 | 164 | 4 | 34 | 251 | 38 | 275 | 1.2e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63908.t1 | G7K4J6 | 85.7 | 279 | 32 | 1 | 1 | 279 | 1 | 271 | 1.9e-127 | 464.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63908.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63908.t1 | MTR_5g095070 | 85.663 | 279 | 32 | 1 | 1 | 279 | 1 | 271 | 2.89e-177 | 489 |
| MS.gene63908.t1 | MTR_5g080030 | 57.951 | 283 | 105 | 5 | 2 | 271 | 3 | 284 | 2.81e-98 | 294 |
| MS.gene63908.t1 | MTR_5g080030 | 63.462 | 104 | 33 | 2 | 177 | 279 | 264 | 363 | 9.75e-32 | 121 |
| MS.gene63908.t1 | MTR_1g084150 | 57.143 | 147 | 42 | 3 | 147 | 272 | 3 | 149 | 5.27e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63908.t1 | AT1G55650 | 24.370 | 238 | 148 | 6 | 34 | 245 | 38 | 269 | 6.77e-11 | 62.4 |
Find 56 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTTCTTGAGGAATATT+TGG | 0.163911 | 5.1:-76050754 | None:intergenic |
| AGTAAAACAGGTACAAGTTT+AGG | 0.215844 | 5.1:-76049237 | None:intergenic |
| CTTTCTAAGGTCCAGTTAAA+AGG | 0.247346 | 5.1:+76049943 | MS.gene63908:intron |
| AATTTGACTAGAGTAGTTCT+TGG | 0.346592 | 5.1:-76050036 | None:intergenic |
| GTAAAACAGGTACAAGTTTA+GGG | 0.365515 | 5.1:-76049236 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5.1:+76049702 | MS.gene63908:CDS |
| TTCTTGCTTTCCTCTACATA+TGG | 0.365771 | 5.1:-76050988 | None:intergenic |
| AACTACTCTAGTCAAATTAC+AGG | 0.369281 | 5.1:+76050041 | MS.gene63908:CDS |
| TGGTAACCACTTTGGTTCCT+TGG | 0.370453 | 5.1:-76050734 | None:intergenic |
| GATGTCGGACATTGATAAAA+AGG | 0.374210 | 5.1:+76050847 | MS.gene63908:CDS |
| AGGTTGGCCATGAAAAGAAA+TGG | 0.384383 | 5.1:+76049674 | MS.gene63908:intron |
| TTGAATGAGTTTGATATAGA+AGG | 0.393011 | 5.1:-76048911 | None:intergenic |
| TTGAGAAATTGTACTTCTAC+AGG | 0.406380 | 5.1:+76049788 | MS.gene63908:CDS |
| AGAGGAAAGCAAGAAAATAA+AGG | 0.412073 | 5.1:+76050996 | MS.gene63908:CDS |
| TAGAAGGTCTCCAAGTCATT+AGG | 0.425705 | 5.1:-76048895 | None:intergenic |
| ACATTGGTGAGTTGTTTGTT+TGG | 0.429837 | 5.1:-76048841 | None:intergenic |
| TTGTGACCTCCAAGTAAAAC+AGG | 0.431064 | 5.1:-76049249 | None:intergenic |
| GGAATATTTGGTAACCACTT+TGG | 0.442677 | 5.1:-76050742 | None:intergenic |
| CTCACCAATGTTGTCGTGTC+CGG | 0.446758 | 5.1:+76048853 | MS.gene63908:CDS |
| AGTGCACTCAAGATCTTAAG+AGG | 0.447998 | 5.1:+76051058 | MS.gene63908:CDS |
| GGTTGGCCATGAAAAGAAAT+GGG | 0.467471 | 5.1:+76049675 | MS.gene63908:intron |
| TTGGATATCTTTGCCGCCAT+CGG | 0.472444 | 5.1:-76050017 | None:intergenic |
| CCTGCAACCGCCAATGCAAA+AGG | 0.477405 | 5.1:+76049814 | MS.gene63908:CDS |
| TCGACTGAAAGCTGATCATC+AGG | 0.477735 | 5.1:+76050781 | MS.gene63908:CDS |
| ACAAGTTTAGGGATGTTTCT+CGG | 0.498193 | 5.1:-76049225 | None:intergenic |
| AACAAATGGCTATTGATACT+TGG | 0.501313 | 5.1:+76050819 | MS.gene63908:CDS |
| CATACGCGTCCGAAAACAAA+TGG | 0.508342 | 5.1:+76050805 | MS.gene63908:CDS |
| TTCTTACTTAAAGCAGGAGA+TGG | 0.509273 | 5.1:+76050641 | MS.gene63908:intron |
| CTCAATGGAAGACAAGGAAA+TGG | 0.517620 | 5.1:+76048804 | None:intergenic |
| GTCGAGCACATTCCTTCTTG+AGG | 0.518278 | 5.1:-76050763 | None:intergenic |
| TACTTGGAGGTCACAAGAAG+AGG | 0.530713 | 5.1:+76049256 | MS.gene63908:CDS |
| GTATTCTTCTCCTAATGACT+TGG | 0.531995 | 5.1:+76048885 | MS.gene63908:CDS |
| AAGGTCCAGTTAAAAGGAAG+CGG | 0.550807 | 5.1:+76049949 | MS.gene63908:intron |
| CCAATGTTGTCGTGTCCGGC+GGG | 0.557640 | 5.1:+76048857 | MS.gene63908:CDS |
| ACCAATGTTGTCGTGTCCGG+CGG | 0.561143 | 5.1:+76048856 | MS.gene63908:CDS |
| AGGTCCAGTTAAAAGGAAGC+GGG | 0.572045 | 5.1:+76049950 | MS.gene63908:intron |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5.1:+76049706 | MS.gene63908:CDS |
| CCCTAGTTTATCTCAATCAA+CGG | 0.576803 | 5.1:+76049980 | MS.gene63908:CDS |
| TTACCAAATATTCCTCAAGA+AGG | 0.579179 | 5.1:+76050751 | MS.gene63908:CDS |
| CCCGCCGGACACGACAACAT+TGG | 0.584078 | 5.1:-76048857 | None:intergenic |
| CCGTTGATTGAGATAAACTA+GGG | 0.589080 | 5.1:-76049980 | None:intergenic |
| TCCGTTGATTGAGATAAACT+AGG | 0.590229 | 5.1:-76049981 | None:intergenic |
| AGACAACTCAATGGAAGACA+AGG | 0.602364 | 5.1:+76048798 | None:intergenic |
| TTGGAGGTCACAAGAAGAGG+AGG | 0.603112 | 5.1:+76049259 | MS.gene63908:CDS |
| AGAAACAGAGAGGTGCTCCA+AGG | 0.610360 | 5.1:+76050717 | MS.gene63908:CDS |
| TTTCATGTAGCCATATGTAG+AGG | 0.614803 | 5.1:+76050978 | MS.gene63908:intron |
| TGATACTTGGAAGAAGATGT+CGG | 0.619673 | 5.1:+76050832 | MS.gene63908:CDS |
| GGACGATGAAGATTATCCGA+TGG | 0.637194 | 5.1:+76050001 | MS.gene63908:CDS |
| GTGCACTCAAGATCTTAAGA+GGG | 0.655456 | 5.1:+76051059 | MS.gene63908:CDS |
| CAAGGAAATGGTGAAGACGA+CGG | 0.673865 | 5.1:+76048816 | MS.gene63908:CDS |
| CGATGAAGATTATCCGATGG+CGG | 0.681671 | 5.1:+76050004 | MS.gene63908:CDS |
| AGAAGAATACTGTTTCCCGC+CGG | 0.682409 | 5.1:-76048872 | None:intergenic |
| GAAAAGAAGCATAATGTGTG+TGG | 0.683498 | 5.1:+76051084 | MS.gene63908:CDS |
| AAAGAAAAGAAGAAACAGAG+AGG | 0.700139 | 5.1:+76050707 | MS.gene63908:CDS |
| GGTGCTCCAAGGAACCAAAG+TGG | 0.716106 | 5.1:+76050728 | MS.gene63908:CDS |
| GTTGGCCATGAAAAGAAATG+GGG | 0.719191 | 5.1:+76049676 | MS.gene63908:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTACATATAATTATTT+GGG | + | chr5.1:76049142-76049161 | MS.gene63908:intron | 10.0% |
| !! | TGTTATTACATATAATTATT+TGG | + | chr5.1:76049141-76049160 | MS.gene63908:intron | 10.0% |
| !! | TTATAAAAAAAAAATTTCCT+CGG | + | chr5.1:76049602-76049621 | MS.gene63908:intron | 10.0% |
| !! | ATTAAAAGTTGAAAGATTTA+TGG | + | chr5.1:76050902-76050921 | MS.gene63908:intron | 15.0% |
| !!! | GAGGAAATTTTTTTTTTATA+AGG | - | chr5.1:76049603-76049622 | None:intergenic | 15.0% |
| !! | ATTATTTGGATGAGTTTAAA+GGG | + | chr5.1:76050343-76050362 | MS.gene63908:intron | 20.0% |
| !! | ATTTCAAATAAACCAACTAT+AGG | - | chr5.1:76050940-76050959 | None:intergenic | 20.0% |
| !!! | TTCAATTTACAACGTTTTTA+TGG | + | chr5.1:76049630-76049649 | MS.gene63908:intron | 20.0% |
| ! | ACATCATATATATGATGACA+TGG | + | chr5.1:76049307-76049326 | MS.gene63908:intron | 25.0% |
| ! | ATTTACTAAAGTTCCAAAAC+CGG | + | chr5.1:76050257-76050276 | MS.gene63908:intron | 25.0% |
| ! | CGAAAATTGAATTCATTGAT+TGG | + | chr5.1:76050091-76050110 | MS.gene63908:intron | 25.0% |
| ! | GATTATTTGGATGAGTTTAA+AGG | + | chr5.1:76050342-76050361 | MS.gene63908:intron | 25.0% |
| ! | GTAATCTAAATTAGTCAAGA+GGG | + | chr5.1:76049552-76049571 | MS.gene63908:intron | 25.0% |
| ! | TAAAATACGAGCTTGAAATA+TGG | + | chr5.1:76050486-76050505 | MS.gene63908:intron | 25.0% |
| ! | TAATCTAAATTAGTCAAGAG+GGG | + | chr5.1:76049553-76049572 | MS.gene63908:intron | 25.0% |
| ! | TAGTCAAATTACAGGTAATA+AGG | + | chr5.1:76050049-76050068 | MS.gene63908:intron | 25.0% |
| ! | TCTTGACTAATTTAGATTAC+AGG | - | chr5.1:76049552-76049571 | None:intergenic | 25.0% |
| ! | TGTAATCTAAATTAGTCAAG+AGG | + | chr5.1:76049551-76049570 | MS.gene63908:intron | 25.0% |
| ! | TTGAAACTGCAAAATAGAAT+TGG | - | chr5.1:76049202-76049221 | None:intergenic | 25.0% |
| ! | TTGAATGAGTTTGATATAGA+AGG | - | chr5.1:76048914-76048933 | None:intergenic | 25.0% |
| !! | TTGGTAACTCAATGATTATT+TGG | + | chr5.1:76050329-76050348 | MS.gene63908:intron | 25.0% |
| !!! | TATCAATAGCCATTTGTTTT+CGG | - | chr5.1:76050817-76050836 | None:intergenic | 25.0% |
| !!! | TCAAAATCTACTTTGAAATC+TGG | - | chr5.1:76050448-76050467 | None:intergenic | 25.0% |
| !!! | TTCTTTTCTTTGTTACTTGA+GGG | - | chr5.1:76050698-76050717 | None:intergenic | 25.0% |
| AAAGAAAAGAAGAAACAGAG+AGG | + | chr5.1:76050707-76050726 | MS.gene63908:CDS | 30.0% | |
| AACAAATGGCTATTGATACT+TGG | + | chr5.1:76050819-76050838 | MS.gene63908:CDS | 30.0% | |
| AACACAAAAAGTAGCAAAAC+CGG | - | chr5.1:76050279-76050298 | None:intergenic | 30.0% | |
| AACTACTCTAGTCAAATTAC+AGG | + | chr5.1:76050041-76050060 | MS.gene63908:CDS | 30.0% | |
| AATTTGACTAGAGTAGTTCT+TGG | - | chr5.1:76050039-76050058 | None:intergenic | 30.0% | |
| ACCTTAAATACTCCTTTCTA+AGG | + | chr5.1:76049930-76049949 | MS.gene63908:intron | 30.0% | |
| AGAGGAAAGCAAGAAAATAA+AGG | + | chr5.1:76050996-76051015 | MS.gene63908:CDS | 30.0% | |
| AGTAAAACAGGTACAAGTTT+AGG | - | chr5.1:76049240-76049259 | None:intergenic | 30.0% | |
| ATGTAACCAAACAATATACC+TGG | - | chr5.1:76049291-76049310 | None:intergenic | 30.0% | |
| ATTCCTTCTTGAGGAATATT+TGG | - | chr5.1:76050757-76050776 | None:intergenic | 30.0% | |
| ATTGGATTCTTACTTAAAGC+AGG | + | chr5.1:76050635-76050654 | MS.gene63908:intron | 30.0% | |
| ATTTCGTGCATTCATATTCA+AGG | + | chr5.1:76049027-76049046 | MS.gene63908:intron | 30.0% | |
| GTAAAACAGGTACAAGTTTA+GGG | - | chr5.1:76049239-76049258 | None:intergenic | 30.0% | |
| TGCTTCAGATAACCATAAAT+TGG | - | chr5.1:76049853-76049872 | None:intergenic | 30.0% | |
| TTACAGGCACAACATATTTA+TGG | - | chr5.1:76049536-76049555 | None:intergenic | 30.0% | |
| TTACCAAATATTCCTCAAGA+AGG | + | chr5.1:76050751-76050770 | MS.gene63908:CDS | 30.0% | |
| TTGAGAAATTGTACTTCTAC+AGG | + | chr5.1:76049788-76049807 | MS.gene63908:CDS | 30.0% | |
| ! | AAAAGGTTAACCTTTTGCAT+TGG | - | chr5.1:76049827-76049846 | None:intergenic | 30.0% |
| ! | AAACTTGTACCTGTTTTACT+TGG | + | chr5.1:76049240-76049259 | MS.gene63908:CDS | 30.0% |
| ! | ATGCAAAAGGTTAACCTTTT+AGG | + | chr5.1:76049827-76049846 | MS.gene63908:intron | 30.0% |
| ! | TAACCATAAATTGGCCTAAA+AGG | - | chr5.1:76049844-76049863 | None:intergenic | 30.0% |
| ! | TAACCTTTTAGGCCAATTTA+TGG | + | chr5.1:76049838-76049857 | MS.gene63908:intron | 30.0% |
| ! | TGCAAATAGAAGCTACATTT+TGG | - | chr5.1:76049502-76049521 | None:intergenic | 30.0% |
| ! | TTTTCACCAGGTATATTGTT+TGG | + | chr5.1:76049282-76049301 | MS.gene63908:intron | 30.0% |
| !! | ACCTTAGAAAGGAGTATTTA+AGG | - | chr5.1:76049934-76049953 | None:intergenic | 30.0% |
| !! | CTTCTTTTCTTTGTTACTTG+AGG | - | chr5.1:76050699-76050718 | None:intergenic | 30.0% |
| !! | TTTTGCAATTAGCCTATAGT+TGG | + | chr5.1:76050925-76050944 | MS.gene63908:intron | 30.0% |
| !! | TTTTTCAACTTGAGCACATA+AGG | - | chr5.1:76049743-76049762 | None:intergenic | 30.0% |
| !!! | TAGAAGCTACATTTTGGTTA+TGG | - | chr5.1:76049496-76049515 | None:intergenic | 30.0% |
| !!! | TGTTTCAGTTTGTTGCATTT+TGG | + | chr5.1:76049882-76049901 | MS.gene63908:intron | 30.0% |
| ACAACCCAAATTCAGTTTAG+AGG | + | chr5.1:76050574-76050593 | MS.gene63908:intron | 35.0% | |
| ACAAGTTTAGGGATGTTTCT+CGG | - | chr5.1:76049228-76049247 | None:intergenic | 35.0% | |
| ACATTGGTGAGTTGTTTGTT+TGG | - | chr5.1:76048844-76048863 | None:intergenic | 35.0% | |
| CACAACTGATCAATTCACTA+TGG | + | chr5.1:76050227-76050246 | MS.gene63908:intron | 35.0% | |
| CCCTAGTTTATCTCAATCAA+CGG | + | chr5.1:76049980-76049999 | MS.gene63908:CDS | 35.0% | |
| GATGTCGGACATTGATAAAA+AGG | + | chr5.1:76050847-76050866 | MS.gene63908:CDS | 35.0% | |
| GCAAAATAGAATTGGAACAG+AGG | - | chr5.1:76049194-76049213 | None:intergenic | 35.0% | |
| GCAATGTCGAAAACTATATG+TGG | - | chr5.1:76049467-76049486 | None:intergenic | 35.0% | |
| GTATTCTTCTCCTAATGACT+TGG | + | chr5.1:76048885-76048904 | MS.gene63908:CDS | 35.0% | |
| TGATACTTGGAAGAAGATGT+CGG | + | chr5.1:76050832-76050851 | MS.gene63908:CDS | 35.0% | |
| TGGATGAGTTTAAAGGGATT+TGG | + | chr5.1:76050349-76050368 | MS.gene63908:intron | 35.0% | |
| TTCTCTTGAATGTTTCCTAC+AGG | + | chr5.1:76049654-76049673 | MS.gene63908:intron | 35.0% | |
| TTCTTACTTAAAGCAGGAGA+TGG | + | chr5.1:76050641-76050660 | MS.gene63908:intron | 35.0% | |
| TTCTTGCTTTCCTCTACATA+TGG | - | chr5.1:76050991-76051010 | None:intergenic | 35.0% | |
| TTGTAAATTGAACATCTCCG+AGG | - | chr5.1:76049622-76049641 | None:intergenic | 35.0% | |
| TTTCATGTAGCCATATGTAG+AGG | + | chr5.1:76050978-76050997 | MS.gene63908:intron | 35.0% | |
| ! | ATTCAACTTTTAGACTTCGC+TGG | + | chr5.1:76048928-76048947 | MS.gene63908:CDS | 35.0% |
| ! | CCGTTGATTGAGATAAACTA+GGG | - | chr5.1:76049983-76050002 | None:intergenic | 35.0% |
| ! | CTGTGGACATGAGTTTATTT+TGG | + | chr5.1:76050310-76050329 | MS.gene63908:intron | 35.0% |
| ! | GAAAAGAAGCATAATGTGTG+TGG | + | chr5.1:76051084-76051103 | MS.gene63908:CDS | 35.0% |
| ! | GGAATATTTGGTAACCACTT+TGG | - | chr5.1:76050745-76050764 | None:intergenic | 35.0% |
| ! | TCCGTTGATTGAGATAAACT+AGG | - | chr5.1:76049984-76050003 | None:intergenic | 35.0% |
| ! | TTTTAGACTTCGCTGGAAAA+CGG | + | chr5.1:76048935-76048954 | MS.gene63908:CDS | 35.0% |
| !! | AAAAGTAGCAAAACCGGTTT+TGG | - | chr5.1:76050273-76050292 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | + | chr5.1:76049702-76049721 | MS.gene63908:CDS | 35.0% |
| !! | CTTTCTAAGGTCCAGTTAAA+AGG | + | chr5.1:76049943-76049962 | MS.gene63908:intron | 35.0% |
| !! | CTTTTAACTGGACCTTAGAA+AGG | - | chr5.1:76049945-76049964 | None:intergenic | 35.0% |
| !! | GCTCAAGTTGAAAAACTCTA+TGG | + | chr5.1:76049748-76049767 | MS.gene63908:CDS | 35.0% |
| !! | TGTGTGTTTACTGGTTTGTT+TGG | + | chr5.1:76048993-76049012 | MS.gene63908:intron | 35.0% |
| AAGGTCCAGTTAAAAGGAAG+CGG | + | chr5.1:76049949-76049968 | MS.gene63908:intron | 40.0% | |
| AGCTGCCTCTAAACTGAATT+TGG | - | chr5.1:76050582-76050601 | None:intergenic | 40.0% | |
| AGTGCACTCAAGATCTTAAG+AGG | + | chr5.1:76051058-76051077 | MS.gene63908:CDS | 40.0% | |
| CCAGTAAACACACATGCAAA+CGG | - | chr5.1:76048987-76049006 | None:intergenic | 40.0% | |
| CTTGAATGTTTCCTACAGGT+TGG | + | chr5.1:76049658-76049677 | MS.gene63908:intron | 40.0% | |
| GCTGCCTCTAAACTGAATTT+GGG | - | chr5.1:76050581-76050600 | None:intergenic | 40.0% | |
| GTGCACTCAAGATCTTAAGA+GGG | + | chr5.1:76051059-76051078 | MS.gene63908:CDS | 40.0% | |
| GTGCTTATGCTGCAATACAT+TGG | + | chr5.1:76050617-76050636 | MS.gene63908:intron | 40.0% | |
| GTTGGCCATGAAAAGAAATG+GGG | + | chr5.1:76049676-76049695 | MS.gene63908:CDS | 40.0% | |
| TACGAGCTTGAAATATGGAC+CGG | + | chr5.1:76050491-76050510 | MS.gene63908:intron | 40.0% | |
| TAGAAGGTCTCCAAGTCATT+AGG | - | chr5.1:76048898-76048917 | None:intergenic | 40.0% | |
| TGTGTTTATTAGCTGCACTG+TGG | + | chr5.1:76050293-76050312 | MS.gene63908:intron | 40.0% | |
| TTGTGACCTCCAAGTAAAAC+AGG | - | chr5.1:76049252-76049271 | None:intergenic | 40.0% | |
| ! | AGGTTAACCTTTTGCATTGG+CGG | - | chr5.1:76049824-76049843 | None:intergenic | 40.0% |
| ! | AGGTTGGCCATGAAAAGAAA+TGG | + | chr5.1:76049674-76049693 | MS.gene63908:intron | 40.0% |
| ! | CTTCACCCCATTTCTTTTCA+TGG | - | chr5.1:76049684-76049703 | None:intergenic | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5.1:76049243-76049262 | MS.gene63908:CDS | 40.0% |
| ! | GGTTGGCCATGAAAAGAAAT+GGG | + | chr5.1:76049675-76049694 | MS.gene63908:intron | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | + | chr5.1:76049706-76049725 | MS.gene63908:CDS | 40.0% |
| AGAAGAATACTGTTTCCCGC+CGG | - | chr5.1:76048875-76048894 | None:intergenic | 45.0% | |
| AGCACATCGTCGTTCAATCA+AGG | - | chr5.1:76050521-76050540 | None:intergenic | 45.0% | |
| AGCCTTCAACTTCAACCTAC+AGG | + | chr5.1:76049388-76049407 | MS.gene63908:intron | 45.0% | |
| AGGTCCAGTTAAAAGGAAGC+GGG | + | chr5.1:76049950-76049969 | MS.gene63908:intron | 45.0% | |
| CAAGGAAATGGTGAAGACGA+CGG | + | chr5.1:76048816-76048835 | MS.gene63908:CDS | 45.0% | |
| CATACGCGTCCGAAAACAAA+TGG | + | chr5.1:76050805-76050824 | MS.gene63908:CDS | 45.0% | |
| CCGTTTGCATGTGTGTTTAC+TGG | + | chr5.1:76048984-76049003 | MS.gene63908:intron | 45.0% | |
| CCTTCAACTTCAACCTACAG+GGG | + | chr5.1:76049390-76049409 | MS.gene63908:intron | 45.0% | |
| CGATGAAGATTATCCGATGG+CGG | + | chr5.1:76050004-76050023 | MS.gene63908:CDS | 45.0% | |
| GCCTTCAACTTCAACCTACA+GGG | + | chr5.1:76049389-76049408 | MS.gene63908:intron | 45.0% | |
| GGACGATGAAGATTATCCGA+TGG | + | chr5.1:76050001-76050020 | MS.gene63908:CDS | 45.0% | |
| GGTGGTTCAAACAAGATCTG+CGG | + | chr5.1:76050421-76050440 | MS.gene63908:intron | 45.0% | |
| GTGGACACACATTCGAACTT+TGG | - | chr5.1:76049448-76049467 | None:intergenic | 45.0% | |
| TACTTGGAGGTCACAAGAAG+AGG | + | chr5.1:76049256-76049275 | MS.gene63908:CDS | 45.0% | |
| TCGACTGAAAGCTGATCATC+AGG | + | chr5.1:76050781-76050800 | MS.gene63908:CDS | 45.0% | |
| TTGCTAGATTCAACCCCTGT+AGG | - | chr5.1:76049406-76049425 | None:intergenic | 45.0% | |
| TTGGATATCTTTGCCGCCAT+CGG | - | chr5.1:76050020-76050039 | None:intergenic | 45.0% | |
| ! | AAGAAGAGGAGGTTTTCACC+AGG | + | chr5.1:76049270-76049289 | MS.gene63908:CDS | 45.0% |
| ! | TCTTTTCATGGCCAACCTGT+AGG | - | chr5.1:76049672-76049691 | None:intergenic | 45.0% |
| ! | TGGTAACCACTTTGGTTCCT+TGG | - | chr5.1:76050737-76050756 | None:intergenic | 45.0% |
| CTCACCAATGTTGTCGTGTC+CGG | + | chr5.1:76048853-76048872 | MS.gene63908:CDS | 50.0% | |
| GTCGAGCACATTCCTTCTTG+AGG | - | chr5.1:76050766-76050785 | None:intergenic | 50.0% | |
| GTCGTTCAATCAAGGTCGTC+CGG | - | chr5.1:76050513-76050532 | None:intergenic | 50.0% | |
| TCGCACGCTTTCAACCACAT+CGG | + | chr5.1:76050397-76050416 | MS.gene63908:intron | 50.0% | |
| TGTTTGAACCACCACCGATG+TGG | - | chr5.1:76050414-76050433 | None:intergenic | 50.0% | |
| TTGGAGGTCACAAGAAGAGG+AGG | + | chr5.1:76049259-76049278 | MS.gene63908:CDS | 50.0% | |
| ! | CCCCTGTAGGTTGAAGTTGA+AGG | - | chr5.1:76049393-76049412 | None:intergenic | 50.0% |
| ! | GAGTCCCGCTTCCTTTTAAC+TGG | - | chr5.1:76049957-76049976 | None:intergenic | 50.0% |
| !! | AGAAACAGAGAGGTGCTCCA+AGG | + | chr5.1:76050717-76050736 | MS.gene63908:CDS | 50.0% |
| ACCAATGTTGTCGTGTCCGG+CGG | + | chr5.1:76048856-76048875 | MS.gene63908:CDS | 55.0% | |
| AGCGTGCGATCACAGGATTG+TGG | - | chr5.1:76050386-76050405 | None:intergenic | 55.0% | |
| CACGCTTTCAACCACATCGG+TGG | + | chr5.1:76050400-76050419 | MS.gene63908:intron | 55.0% | |
| CCTGCAACCGCCAATGCAAA+AGG | + | chr5.1:76049814-76049833 | MS.gene63908:CDS | 55.0% | |
| GCTTTCAACCACATCGGTGG+TGG | + | chr5.1:76050403-76050422 | MS.gene63908:intron | 55.0% | |
| GGTGCTCCAAGGAACCAAAG+TGG | + | chr5.1:76050728-76050747 | MS.gene63908:CDS | 55.0% | |
| ! | GGTTGAAAGCGTGCGATCAC+AGG | - | chr5.1:76050393-76050412 | None:intergenic | 55.0% |
| !! | CCTTTTGCATTGGCGGTTGC+AGG | - | chr5.1:76049817-76049836 | None:intergenic | 55.0% |
| CCAATGTTGTCGTGTCCGGC+GGG | + | chr5.1:76048857-76048876 | MS.gene63908:CDS | 60.0% | |
| CCCGCCGGACACGACAACAT+TGG | - | chr5.1:76048860-76048879 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76048808 | 76051116 | 76048808 | ID=MS.gene63908 |
| chr5.1 | mRNA | 76048808 | 76051116 | 76048808 | ID=MS.gene63908.t1;Parent=MS.gene63908 |
| chr5.1 | exon | 76048808 | 76048956 | 76048808 | ID=MS.gene63908.t1.exon1;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76048808 | 76048956 | 76048808 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| chr5.1 | exon | 76049216 | 76049291 | 76049216 | ID=MS.gene63908.t1.exon2;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76049216 | 76049291 | 76049216 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| chr5.1 | exon | 76049676 | 76049835 | 76049676 | ID=MS.gene63908.t1.exon3;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76049676 | 76049835 | 76049676 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| chr5.1 | exon | 76049952 | 76050062 | 76049952 | ID=MS.gene63908.t1.exon4;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76049952 | 76050062 | 76049952 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| chr5.1 | exon | 76050654 | 76050868 | 76050654 | ID=MS.gene63908.t1.exon5;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76050654 | 76050868 | 76050654 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| chr5.1 | exon | 76050988 | 76051116 | 76050988 | ID=MS.gene63908.t1.exon6;Parent=MS.gene63908.t1 |
| chr5.1 | CDS | 76050988 | 76051116 | 76050988 | ID=cds.MS.gene63908.t1;Parent=MS.gene63908.t1 |
| Gene Sequence |
| Protein sequence |
