Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64009.t1 | AFK49400.1 | 94.8 | 326 | 16 | 1 | 15 | 340 | 79 | 403 | 4.40E-161 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64009.t1 | G7I760 | 94.8 | 326 | 16 | 1 | 15 | 340 | 79 | 403 | 3.2e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64009.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64009.t1 | MTR_1g024980 | 97.853 | 326 | 6 | 1 | 15 | 340 | 79 | 403 | 0.0 | 651 |
| MS.gene64009.t1 | MTR_3g072920 | 59.854 | 274 | 87 | 7 | 81 | 337 | 183 | 450 | 2.60e-109 | 326 |
| MS.gene64009.t1 | MTR_4g081420 | 50.833 | 240 | 105 | 3 | 108 | 337 | 200 | 436 | 3.90e-71 | 228 |
| MS.gene64009.t1 | MTR_3g463270 | 44.151 | 265 | 121 | 10 | 93 | 338 | 133 | 389 | 4.76e-60 | 197 |
| MS.gene64009.t1 | MTR_2g010860 | 43.460 | 237 | 117 | 6 | 113 | 337 | 145 | 376 | 2.74e-52 | 177 |
| MS.gene64009.t1 | MTR_2g010870 | 40.816 | 245 | 120 | 5 | 113 | 337 | 116 | 355 | 3.89e-50 | 171 |
| MS.gene64009.t1 | MTR_5g012220 | 40.097 | 207 | 100 | 7 | 135 | 338 | 105 | 290 | 1.34e-37 | 136 |
| MS.gene64009.t1 | MTR_4g101450 | 40.609 | 197 | 86 | 6 | 146 | 338 | 106 | 275 | 1.53e-37 | 135 |
| MS.gene64009.t1 | MTR_5g094440 | 34.466 | 206 | 118 | 7 | 138 | 336 | 74 | 269 | 1.27e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64009.t1 | AT1G75710 | 62.953 | 359 | 97 | 9 | 15 | 339 | 104 | 460 | 7.55e-139 | 402 |
| MS.gene64009.t1 | AT4G27240 | 42.535 | 355 | 161 | 9 | 15 | 337 | 87 | 430 | 2.22e-71 | 228 |
| MS.gene64009.t1 | AT5G54630 | 49.388 | 245 | 98 | 5 | 113 | 337 | 233 | 471 | 9.97e-70 | 225 |
| MS.gene64009.t1 | AT4G27240 | 41.641 | 329 | 149 | 9 | 15 | 311 | 87 | 404 | 7.18e-59 | 196 |
| MS.gene64009.t1 | AT2G29660 | 42.972 | 249 | 116 | 7 | 113 | 338 | 128 | 373 | 5.78e-55 | 184 |
| MS.gene64009.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 113 | 337 | 129 | 364 | 1.44e-41 | 149 |
| MS.gene64009.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 113 | 337 | 129 | 364 | 1.44e-41 | 149 |
| MS.gene64009.t1 | AT4G12450 | 35.160 | 219 | 100 | 5 | 130 | 338 | 91 | 277 | 3.69e-32 | 121 |
| MS.gene64009.t1 | AT4G22560 | 37.981 | 208 | 90 | 6 | 135 | 338 | 92 | 264 | 1.38e-30 | 117 |
| MS.gene64009.t1 | AT1G62520 | 36.585 | 205 | 104 | 7 | 136 | 338 | 100 | 280 | 6.33e-30 | 115 |
Find 94 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1.4:+783618 | None:intergenic |
| CTTCGATCTGTTTGCATGTT+AGG | 0.213526 | 1.4:+784700 | None:intergenic |
| ACTCGTTCTGCATCATGTTC+TGG | 0.262275 | 1.4:-784471 | MS.gene64009:CDS |
| CGGTTGGAGAAGATTCTAAA+AGG | 0.273622 | 1.4:-780891 | MS.gene64009:CDS |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1.4:+783663 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1.4:-784404 | MS.gene64009:CDS |
| TCCACCCTTTGCGCTGTGCC+TGG | 0.313978 | 1.4:-781003 | MS.gene64009:CDS |
| CGAGTTGATGAAGCAGTAAT+AGG | 0.323514 | 1.4:+784489 | None:intergenic |
| GATTCCATTGCGGGGAATGC+TGG | 0.326389 | 1.4:-780775 | MS.gene64009:CDS |
| AGCTTTAGAGATGTTGTTCA+TGG | 0.351657 | 1.4:-784597 | MS.gene64009:CDS |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1.4:+783669 | None:intergenic |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1.4:-784541 | MS.gene64009:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1.4:+780843 | None:intergenic |
| CTCGTTCTGCATCATGTTCT+GGG | 0.404522 | 1.4:-784470 | MS.gene64009:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1.4:-784393 | MS.gene64009:CDS |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1.4:+783619 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1.4:-783622 | MS.gene64009:CDS |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1.4:-781276 | MS.gene64009:CDS |
| CTTGTGTGCCGCGTAATTGC+CGG | 0.434569 | 1.4:-780862 | MS.gene64009:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1.4:-781292 | MS.gene64009:intron |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1.4:+781267 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1.4:-781291 | MS.gene64009:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1.4:+781148 | None:intergenic |
| GTTGCCATCTGCGGCACACC+GGG | 0.446676 | 1.4:+781083 | None:intergenic |
| GGTGGTGTCGGAGGAGGAAA+TGG | 0.447453 | 1.4:-780806 | MS.gene64009:CDS |
| CTTTGCGCTGTGCCTGGATG+CGG | 0.464668 | 1.4:-780997 | MS.gene64009:CDS |
| GCGGAGTTTGCAACATCATC+CGG | 0.466040 | 1.4:-780978 | MS.gene64009:CDS |
| TGCACCGGTGGTGTCGGAGG+AGG | 0.468864 | 1.4:-780812 | MS.gene64009:CDS |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1.4:+784342 | None:intergenic |
| GGAAGGTGCACCGGTGGTGT+CGG | 0.478428 | 1.4:-780818 | MS.gene64009:CDS |
| ATTCCATTGCGGGGAATGCT+GGG | 0.485252 | 1.4:-780774 | MS.gene64009:CDS |
| AGGCACAGCGCAAAGGGTGG+AGG | 0.488877 | 1.4:+781005 | None:intergenic |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1.4:-784540 | MS.gene64009:CDS |
| GCATCCAGGCACAGCGCAAA+GGG | 0.492013 | 1.4:+780999 | None:intergenic |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1.4:-781157 | MS.gene64009:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1.4:+781113 | None:intergenic |
| TGGTAGGGCCCACGACAATT+CGG | 0.496075 | 1.4:-780911 | MS.gene64009:CDS |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1.4:+784343 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1.4:-780839 | MS.gene64009:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1.4:+781112 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1.4:-784356 | MS.gene64009:intron |
| CGCATCCAGGCACAGCGCAA+AGG | 0.505355 | 1.4:+780998 | None:intergenic |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1.4:-783594 | MS.gene64009:intron |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1.4:+781052 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1.4:-784575 | MS.gene64009:CDS |
| AGGTGCACCGGTGGTGTCGG+AGG | 0.521522 | 1.4:-780815 | MS.gene64009:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1.4:+780715 | None:intergenic |
| CGTTGCCATCTGCGGCACAC+CGG | 0.527397 | 1.4:+781082 | None:intergenic |
| CGATCTGTTTGCATGTTAGG+AGG | 0.530379 | 1.4:+784703 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1.4:-780835 | MS.gene64009:CDS |
| GGTTGGAGAAGATTCTAAAA+GGG | 0.542282 | 1.4:-780890 | MS.gene64009:CDS |
| AATCCCCGGTGTGCCGCAGA+TGG | 0.542426 | 1.4:-781087 | MS.gene64009:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1.4:+781169 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.550457 | 1.4:+780985 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1.4:-784450 | MS.gene64009:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1.4:-781239 | MS.gene64009:CDS |
| AGACCAATGCTAGTAGTGGT+AGG | 0.560855 | 1.4:-780927 | MS.gene64009:CDS |
| TTGTGTGCCGCGTAATTGCC+GGG | 0.563188 | 1.4:-780861 | MS.gene64009:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1.4:+784440 | None:intergenic |
| TCACTTTCCCGGCAATTACG+CGG | 0.565013 | 1.4:+780854 | None:intergenic |
| GGCCCTACCACTACTAGCAT+TGG | 0.565787 | 1.4:+780924 | None:intergenic |
| ATTTCCTCCTCCGACACCAC+CGG | 0.566681 | 1.4:+780808 | None:intergenic |
| TTCTCCAACCGAATTGTCGT+GGG | 0.568898 | 1.4:+780903 | None:intergenic |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1.4:+784537 | None:intergenic |
| ACTCCCAGCATTCCCCGCAA+TGG | 0.570065 | 1.4:+780771 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1.4:-780824 | MS.gene64009:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1.4:-781203 | MS.gene64009:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.577528 | 1.4:-780926 | MS.gene64009:CDS |
| TCCAGGCACAGCGCAAAGGG+TGG | 0.581274 | 1.4:+781002 | None:intergenic |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1.4:+781201 | None:intergenic |
| AGGGCCCACGACAATTCGGT+TGG | 0.586441 | 1.4:-780907 | MS.gene64009:CDS |
| CTTCTCCAACCGAATTGTCG+TGG | 0.589666 | 1.4:+780902 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1.4:-781283 | MS.gene64009:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1.4:-781030 | MS.gene64009:CDS |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1.4:-780827 | MS.gene64009:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1.4:-781039 | MS.gene64009:CDS |
| TCATCATCATCATCTTCAAG+AGG | 0.611489 | 1.4:-784417 | MS.gene64009:CDS |
| GTCAAGACCAATGCTAGTAG+TGG | 0.621391 | 1.4:-780931 | MS.gene64009:CDS |
| GAGGAGTTCGTTGCCATCTG+CGG | 0.630941 | 1.4:+781074 | None:intergenic |
| TTGCCATCTGCGGCACACCG+GGG | 0.645965 | 1.4:+781084 | None:intergenic |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1.4:+780700 | None:intergenic |
| CTAACATGCAAACAGATCGA+AGG | 0.664448 | 1.4:-784699 | MS.gene64009:intron |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1.4:-780842 | MS.gene64009:CDS |
| GTTTGCAACATCATCCGGCA+CGG | 0.666115 | 1.4:-780973 | MS.gene64009:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1.4:-784456 | MS.gene64009:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1.4:+781046 | None:intergenic |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.677049 | 1.4:-780845 | MS.gene64009:CDS |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1.4:+781055 | None:intergenic |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1.4:-781164 | MS.gene64009:CDS |
| TCGTTGTGATCAGTGTGGAG+AGG | 0.714771 | 1.4:-783646 | MS.gene64009:CDS |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1.4:-781142 | MS.gene64009:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1.4:-784453 | MS.gene64009:CDS |
| TGCAAGGTATTCGATCAACA+CGG | 0.737085 | 1.4:+780670 | None:intergenic |
| TTATGTCGTTGTGATCAGTG+TGG | 0.816235 | 1.4:-783651 | MS.gene64009:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTATAATTATATTT+AGG | - | chr1.4:781168-781187 | MS.gene64009:CDS | 0.0% |
| !! | AAATATTATTTATTATTATT+AGG | - | chr1.4:783654-783673 | MS.gene64009:CDS | 0.0% |
| !!! | ACATAATAATTTTATTCAAT+TGG | + | chr1.4:782875-782894 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTGACAAAATTT+AGG | - | chr1.4:781198-781217 | MS.gene64009:CDS | 10.0% |
| !!! | GTTTTTAAAAATTTGATATA+TGG | - | chr1.4:781243-781262 | MS.gene64009:CDS | 10.0% |
| !! | AAAGTTATAATTGAAAAATG+TGG | + | chr1.4:781495-781514 | None:intergenic | 15.0% |
| !! | AACTATATAATTATACTAGT+AGG | + | chr1.4:783842-783861 | None:intergenic | 15.0% |
| !! | AGAAAAGTTACTTATAAAAA+AGG | - | chr1.4:782655-782674 | MS.gene64009:intron | 15.0% |
| !! | ATTATTGTTTAAATTTAGGT+TGG | - | chr1.4:783019-783038 | MS.gene64009:intron | 15.0% |
| !! | GTGAATTATTGTTTAAATTT+AGG | - | chr1.4:783015-783034 | MS.gene64009:intron | 15.0% |
| !! | TAATTATGTATAGAGTTTAA+TGG | - | chr1.4:783876-783895 | MS.gene64009:intron | 15.0% |
| !! | AAGTATACTTATAGATTCTT+AGG | - | chr1.4:784040-784059 | MS.gene64009:intron | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | + | chr1.4:781463-781482 | None:intergenic | 20.0% |
| !! | AATAATGGTTACTCAAAATT+AGG | - | chr1.4:780763-780782 | MS.gene64009:CDS | 20.0% |
| !! | ATCTTACTTTCACTTATATA+TGG | - | chr1.4:781999-782018 | MS.gene64009:intron | 20.0% |
| !! | CTCATCAAAAATATCTTTAT+GGG | - | chr1.4:782168-782187 | MS.gene64009:intron | 20.0% |
| !! | TATAATTGAAAAATGTGGTT+GGG | + | chr1.4:781490-781509 | None:intergenic | 20.0% |
| !! | TCTCATCAAAAATATCTTTA+TGG | - | chr1.4:782167-782186 | MS.gene64009:intron | 20.0% |
| !! | TTATAATTGAAAAATGTGGT+TGG | + | chr1.4:781491-781510 | None:intergenic | 20.0% |
| !! | TTGCTCATAAAATAAGATAT+TGG | + | chr1.4:781420-781439 | None:intergenic | 20.0% |
| !! | TTTAGTATAAATATACTCGT+TGG | - | chr1.4:782684-782703 | MS.gene64009:intron | 20.0% |
| !!! | GCTAAGTAATTAATTTTCAT+AGG | + | chr1.4:781681-781700 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTTTTCATACTC+AGG | - | chr1.4:781710-781729 | MS.gene64009:intron | 20.0% |
| !!! | TAGGAATATTCTTATTTTCT+TGG | - | chr1.4:784059-784078 | MS.gene64009:intron | 20.0% |
| !!! | TAGGAATCTAATTCTTTTTA+TGG | - | chr1.4:783561-783580 | MS.gene64009:intron | 20.0% |
| !!! | TCTTTTAATTAGAATACAAG+AGG | + | chr1.4:782638-782657 | None:intergenic | 20.0% |
| !!! | TTAAGTCTTTTCATTTCTAA+AGG | - | chr1.4:781634-781653 | MS.gene64009:intron | 20.0% |
| ! | AACTAACAAGAATTTAGATG+TGG | - | chr1.4:782097-782116 | MS.gene64009:intron | 25.0% |
| ! | GAATAGAAGAGTTAATATGT+TGG | + | chr1.4:782062-782081 | None:intergenic | 25.0% |
| ! | GTGATATATTGTGAATGAAT+CGG | + | chr1.4:783141-783160 | None:intergenic | 25.0% |
| ! | GTGTCTAAATTATCTTTAAC+CGG | - | chr1.4:782603-782622 | MS.gene64009:intron | 25.0% |
| ! | GTGTTACAAAATGTATTGTT+AGG | - | chr1.4:782937-782956 | MS.gene64009:intron | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | - | chr1.4:782208-782227 | MS.gene64009:intron | 25.0% |
| ! | TCAAAACCAAACAACAATAA+TGG | - | chr1.4:780748-780767 | MS.gene64009:CDS | 25.0% |
| ! | TGAGCATGCATAAAAAAAAT+TGG | + | chr1.4:784019-784038 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr1.4:782438-782457 | MS.gene64009:intron | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | + | chr1.4:784708-784727 | None:intergenic | 25.0% |
| ! | TTGTTAGGACAAATTAACAT+CGG | - | chr1.4:782952-782971 | MS.gene64009:intron | 25.0% |
| !! | AACAAACTCTTTTCATTAGT+TGG | + | chr1.4:782908-782927 | None:intergenic | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1.4:781288-781307 | MS.gene64009:intron | 25.0% |
| !! | ATTTTATGAGCAATCTACTT+TGG | - | chr1.4:781427-781446 | MS.gene64009:intron | 25.0% |
| !! | TAGTTTTCTATCGTATGATA+TGG | + | chr1.4:783426-783445 | None:intergenic | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1.4:781921-781940 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | + | chr1.4:782523-782542 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1.4:782202-782221 | None:intergenic | 25.0% |
| !!! | ATGTTAGGAGGTTTTTTATT+TGG | + | chr1.4:780693-780712 | None:intergenic | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1.4:782201-782220 | None:intergenic | 25.0% |
| !!! | TTATTGTTGTTTGGTTTTGA+AGG | + | chr1.4:780748-780767 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr1.4:782425-782444 | MS.gene64009:intron | 25.0% |
| !!! | TTTTCTAGTTATCTTCTTCT+TGG | - | chr1.4:782344-782363 | MS.gene64009:intron | 25.0% |
| AAAAACAATGGAGAGAGAAA+AGG | - | chr1.4:782450-782469 | MS.gene64009:intron | 30.0% | |
| AAAACAATGGAGAGAGAAAA+GGG | - | chr1.4:782451-782470 | MS.gene64009:intron | 30.0% | |
| AAAATTGAATCATGTGTGTG+GGG | - | chr1.4:782209-782228 | MS.gene64009:intron | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | + | chr1.4:781066-781085 | None:intergenic | 30.0% | |
| AAATATCTTCTAGTACTGCT+GGG | - | chr1.4:782716-782735 | MS.gene64009:intron | 30.0% | |
| AACATTATGTTAACCTGCTA+GGG | + | chr1.4:781065-781084 | None:intergenic | 30.0% | |
| AGATAATCTTCAAATCTAGC+TGG | - | chr1.4:784166-784185 | MS.gene64009:intron | 30.0% | |
| ATTAATTCACCTTGTTACGA+TGG | + | chr1.4:783698-783717 | None:intergenic | 30.0% | |
| CAAATACACTACTACTACAA+TGG | - | chr1.4:783393-783412 | MS.gene64009:intron | 30.0% | |
| CCATATAGAAATTCAAACCA+AGG | - | chr1.4:783520-783539 | MS.gene64009:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | - | chr1.4:782207-782226 | MS.gene64009:intron | 30.0% | |
| CTTCTATTCCAATTAATGCA+CGG | - | chr1.4:782073-782092 | MS.gene64009:intron | 30.0% | |
| GTCCAAAAATTGTCAAAAAG+TGG | - | chr1.4:782518-782537 | MS.gene64009:intron | 30.0% | |
| TACTAAGATAATGACATGCA+CGG | + | chr1.4:782295-782314 | None:intergenic | 30.0% | |
| TAGTGTCAGTTTCTTATATG+TGG | + | chr1.4:783359-783378 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr1.4:782400-782419 | None:intergenic | 30.0% | |
| ! | CATAACAAATGCACTTGTTT+TGG | + | chr1.4:783175-783194 | None:intergenic | 30.0% |
| ! | CATCTTCGAAATTTGAAACA+AGG | - | chr1.4:782249-782268 | MS.gene64009:intron | 30.0% |
| ! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1.4:783523-783542 | None:intergenic | 30.0% |
| ! | GAGTAACCATTATTGTTGTT+TGG | + | chr1.4:780757-780776 | None:intergenic | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1.4:782253-782272 | MS.gene64009:intron | 30.0% |
| ! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1.4:784107-784126 | MS.gene64009:intron | 30.0% |
| !! | AAACAAGTGCATTTGTTATG+AGG | - | chr1.4:783175-783194 | MS.gene64009:intron | 30.0% |
| !! | AACATCTCTAAAGCTACAAA+TGG | + | chr1.4:780803-780822 | None:intergenic | 30.0% |
| !! | GTTTAAATTTAGGTTGGTAG+AGG | - | chr1.4:783025-783044 | MS.gene64009:intron | 30.0% |
| !!! | TTTTTTGGGTGAATGAAACA+GGG | + | chr1.4:783226-783245 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGGTGAATGAAAC+AGG | + | chr1.4:783227-783246 | None:intergenic | 30.0% |
| AAACAAGGAAGAATAGCTCT+TGG | + | chr1.4:784693-784712 | None:intergenic | 35.0% | |
| ACAGTACTTGTAAAGCAACT+AGG | + | chr1.4:782321-782340 | None:intergenic | 35.0% | |
| AGATAATTTAGACACCCCAA+AGG | + | chr1.4:782598-782617 | None:intergenic | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | + | chr1.4:781790-781809 | None:intergenic | 35.0% | |
| CAAATATCTTCTAGTACTGC+TGG | - | chr1.4:782715-782734 | MS.gene64009:intron | 35.0% | |
| CAGTACTTGTAAAGCAACTA+GGG | + | chr1.4:782320-782339 | None:intergenic | 35.0% | |
| GAAACACTAGAGTTGTTCAT+AGG | - | chr1.4:780830-780849 | MS.gene64009:CDS | 35.0% | |
| GATAATTTAGACACCCCAAA+GGG | + | chr1.4:782597-782616 | None:intergenic | 35.0% | |
| GTCAGTTTCTTATATGTGGA+TGG | + | chr1.4:783355-783374 | None:intergenic | 35.0% | |
| GTTAGTTACCGTGCATTAAT+TGG | + | chr1.4:782084-782103 | None:intergenic | 35.0% | |
| GTTCCAAGCTTTCAATCTTA+GGG | + | chr1.4:781789-781808 | None:intergenic | 35.0% | |
| TCATCATCATCATCTTCAAG+AGG | - | chr1.4:780988-781007 | MS.gene64009:CDS | 35.0% | |
| TGTCAACTTAATGTAGTGTC+TGG | + | chr1.4:783479-783498 | None:intergenic | 35.0% | |
| ! | ATCGGTTGAGTTTTGCAAAA+TGG | - | chr1.4:782970-782989 | MS.gene64009:intron | 35.0% |
| ! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1.4:781739-781758 | None:intergenic | 35.0% |
| ! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1.4:782252-782271 | MS.gene64009:intron | 35.0% |
| ! | GGTTGGAGAAGATTCTAAAA+GGG | - | chr1.4:784515-784534 | MS.gene64009:CDS | 35.0% |
| !! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1.4:782026-782045 | None:intergenic | 35.0% |
| !! | AGCTTTAGAGATGTTGTTCA+TGG | - | chr1.4:780808-780827 | MS.gene64009:CDS | 35.0% |
| !! | ATACAAGAGGTACTCTAATC+CGG | + | chr1.4:782625-782644 | None:intergenic | 35.0% |
| !!! | AACAAATGCACTTGTTTTGG+TGG | + | chr1.4:783172-783191 | None:intergenic | 35.0% |
| AAGATAATGACATGCACGGA+TGG | + | chr1.4:782291-782310 | None:intergenic | 40.0% | |
| AATCAAGAGTTGTCACGTTG+TGG | + | chr1.4:783324-783343 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | - | chr1.4:784241-784260 | MS.gene64009:intron | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | - | chr1.4:783326-783345 | MS.gene64009:intron | 40.0% | |
| AGTATCACTCCATCGTAACA+AGG | - | chr1.4:783686-783705 | MS.gene64009:intron | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | - | chr1.4:780864-780883 | MS.gene64009:CDS | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | + | chr1.4:784207-784226 | None:intergenic | 40.0% | |
| ATGCAGTTTAGGAAGCTATC+TGG | - | chr1.4:781012-781031 | MS.gene64009:CDS | 40.0% | |
| ATTGGTTATGTAGCCCTTTG+GGG | - | chr1.4:782581-782600 | MS.gene64009:intron | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | + | chr1.4:781745-781764 | None:intergenic | 40.0% | |
| CGGTTGGAGAAGATTCTAAA+AGG | - | chr1.4:784514-784533 | MS.gene64009:CDS | 40.0% | |
| CTAACATGCAAACAGATCGA+AGG | - | chr1.4:780706-780725 | MS.gene64009:CDS | 40.0% | |
| CTCCAATGTGCAAGATTGAA+CGG | - | chr1.4:784202-784221 | MS.gene64009:intron | 40.0% | |
| CTTCAAGAGGAATGCAGTTT+AGG | - | chr1.4:781001-781020 | MS.gene64009:CDS | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | - | chr1.4:781783-781802 | MS.gene64009:intron | 40.0% | |
| CTTCGATCTGTTTGCATGTT+AGG | + | chr1.4:780708-780727 | None:intergenic | 40.0% | |
| GTGTCTGGCTAATGATAACT+TGG | + | chr1.4:783464-783483 | None:intergenic | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | - | chr1.4:780865-780884 | MS.gene64009:CDS | 40.0% | |
| TTATGTCGTTGTGATCAGTG+TGG | - | chr1.4:781754-781773 | MS.gene64009:intron | 40.0% | |
| TTCATTTCGACCTCTTGGAT+TGG | - | chr1.4:782563-782582 | MS.gene64009:intron | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | - | chr1.4:782261-782280 | MS.gene64009:intron | 40.0% | |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1.4:784450-784469 | MS.gene64009:CDS | 40.0% |
| ! | CTCTTTTCATTTCGACCTCT+TGG | - | chr1.4:782558-782577 | MS.gene64009:intron | 40.0% |
| ! | GATTGGTTATGTAGCCCTTT+GGG | - | chr1.4:782580-782599 | MS.gene64009:intron | 40.0% |
| !! | CGAGTTGATGAAGCAGTAAT+AGG | + | chr1.4:780919-780938 | None:intergenic | 40.0% |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1.4:784449-784468 | None:intergenic | 40.0% |
| !! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1.4:780949-780968 | MS.gene64009:CDS | 40.0% |
| !!! | GGTGTGTTTTGATTCCATTG+CGG | - | chr1.4:784620-784639 | MS.gene64009:intron | 40.0% |
| !!! | GTGTGTTTTGATTCCATTGC+GGG | - | chr1.4:784621-784640 | MS.gene64009:intron | 40.0% |
| !!! | TGTGTTTTGATTCCATTGCG+GGG | - | chr1.4:784622-784641 | MS.gene64009:intron | 40.0% |
| ACACCACCAAGAAAAATCCC+CGG | - | chr1.4:784304-784323 | MS.gene64009:intron | 45.0% | |
| ACTCGTTCTGCATCATGTTC+TGG | - | chr1.4:780934-780953 | MS.gene64009:CDS | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | - | chr1.4:784478-784497 | MS.gene64009:CDS | 45.0% | |
| ATAATGACATGCACGGATGG+TGG | + | chr1.4:782288-782307 | None:intergenic | 45.0% | |
| ATAGCGATGTGCTGTGGAAA+CGG | + | chr1.4:784356-784375 | None:intergenic | 45.0% | |
| CGATCTGTTTGCATGTTAGG+AGG | + | chr1.4:780705-780724 | None:intergenic | 45.0% | |
| CTCGTTCTGCATCATGTTCT+GGG | - | chr1.4:780935-780954 | MS.gene64009:CDS | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | - | chr1.4:784479-784498 | MS.gene64009:CDS | 45.0% | |
| GATTCCTAGTCCCTACAACT+CGG | + | chr1.4:783549-783568 | None:intergenic | 45.0% | |
| GGATTGTTCGTTGTGTGTTG+TGG | + | chr1.4:784239-784258 | None:intergenic | 45.0% | |
| GGCTACATAACCAATCCAAG+AGG | + | chr1.4:782576-782595 | None:intergenic | 45.0% | |
| GTCAAGACCAATGCTAGTAG+TGG | - | chr1.4:784474-784493 | MS.gene64009:CDS | 45.0% | |
| TACGAGATATCACAGCTGGA+TGG | - | chr1.4:783273-783292 | MS.gene64009:intron | 45.0% | |
| TACGTACGAGATATCACAGC+TGG | - | chr1.4:783269-783288 | MS.gene64009:intron | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | + | chr1.4:780871-780890 | None:intergenic | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | - | chr1.4:784114-784133 | MS.gene64009:intron | 45.0% | |
| TTCTCCAACCGAATTGTCGT+GGG | + | chr1.4:784505-784524 | None:intergenic | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | - | chr1.4:784113-784132 | MS.gene64009:intron | 45.0% | |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1.4:784141-784160 | None:intergenic | 45.0% |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1.4:784447-784466 | MS.gene64009:CDS | 45.0% |
| !! | GGATTGGTTATGTAGCCCTT+TGG | - | chr1.4:782579-782598 | MS.gene64009:intron | 45.0% |
| !!! | GGGATTTTTCTTGGTGGTGT+TGG | + | chr1.4:784304-784323 | None:intergenic | 45.0% |
| !!! | TAAAACATTTTTATTTTTTT+GGG | + | chr1.4:783240-783259 | None:intergenic | 5.0% |
| !!! | TATTTTTTTAACAATATTAT+TGG | - | chr1.4:781380-781399 | MS.gene64009:intron | 5.0% |
| !!! | TTAAAACATTTTTATTTTTT+TGG | + | chr1.4:783241-783260 | None:intergenic | 5.0% |
| AACCAAGGTAGCCGAGTTGT+AGG | - | chr1.4:783535-783554 | MS.gene64009:intron | 50.0% | |
| ACATCGCTATCGTGTGCACT+CGG | - | chr1.4:784366-784385 | MS.gene64009:CDS | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | - | chr1.4:781049-781068 | MS.gene64009:CDS | 50.0% | |
| ACCAAGGTAGCCGAGTTGTA+GGG | - | chr1.4:783536-783555 | MS.gene64009:intron | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | - | chr1.4:784248-784267 | MS.gene64009:intron | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | + | chr1.4:784423-784442 | None:intergenic | 50.0% | |
| ATTCCATTGCGGGGAATGCT+GGG | - | chr1.4:784631-784650 | MS.gene64009:intron | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | + | chr1.4:783321-783340 | None:intergenic | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | - | chr1.4:781811-781830 | MS.gene64009:intron | 50.0% | |
| CTTCTCCAACCGAATTGTCG+TGG | + | chr1.4:784506-784525 | None:intergenic | 50.0% | |
| GCGGAGTTTGCAACATCATC+CGG | - | chr1.4:784427-784446 | MS.gene64009:CDS | 50.0% | |
| GTTTGCAACATCATCCGGCA+CGG | - | chr1.4:784432-784451 | MS.gene64009:CDS | 50.0% | |
| TCACTTTCCCGGCAATTACG+CGG | + | chr1.4:784554-784573 | None:intergenic | 50.0% | |
| TCGTTGTGATCAGTGTGGAG+AGG | - | chr1.4:781759-781778 | MS.gene64009:intron | 50.0% | |
| TCTGGGAAATCATCCAACGG+TGG | - | chr1.4:780952-780971 | MS.gene64009:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | + | chr1.4:780968-780987 | None:intergenic | 50.0% | |
| ! | ACACCGGGGATTTTTCTTGG+TGG | + | chr1.4:784310-784329 | None:intergenic | 50.0% |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1.4:784296-784315 | None:intergenic | 50.0% |
| AGTTGTCACGTTGTGGAGGC+AGG | + | chr1.4:783317-783336 | None:intergenic | 55.0% | |
| ATTTCCTCCTCCGACACCAC+CGG | + | chr1.4:784600-784619 | None:intergenic | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | + | chr1.4:784362-784381 | None:intergenic | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | + | chr1.4:784260-784279 | None:intergenic | 55.0% | |
| CTTGTGTGCCGCGTAATTGC+CGG | - | chr1.4:784543-784562 | MS.gene64009:CDS | 55.0% | |
| GAGGAGTTCGTTGCCATCTG+CGG | + | chr1.4:784334-784353 | None:intergenic | 55.0% | |
| GATTCCATTGCGGGGAATGC+TGG | - | chr1.4:784630-784649 | MS.gene64009:intron | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | + | chr1.4:784484-784503 | None:intergenic | 55.0% | |
| GGGAAATCATCCAACGGTGG+AGG | - | chr1.4:780955-780974 | MS.gene64009:CDS | 55.0% | |
| GTAGCCGAGTTGTAGGGACT+AGG | - | chr1.4:783542-783561 | MS.gene64009:intron | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | - | chr1.4:784263-784282 | MS.gene64009:intron | 55.0% | |
| TCCCTACAACTCGGCTACCT+TGG | + | chr1.4:783540-783559 | None:intergenic | 55.0% | |
| TGGTAGGGCCCACGACAATT+CGG | - | chr1.4:784494-784513 | MS.gene64009:CDS | 55.0% | |
| TTGTGTGCCGCGTAATTGCC+GGG | - | chr1.4:784544-784563 | MS.gene64009:CDS | 55.0% | |
| ! | GGCACACCGGGGATTTTTCT+TGG | + | chr1.4:784313-784332 | None:intergenic | 55.0% |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1.4:784295-784314 | None:intergenic | 55.0% |
| ACTCCCAGCATTCCCCGCAA+TGG | + | chr1.4:784637-784656 | None:intergenic | 60.0% | |
| AGGGCCCACGACAATTCGGT+TGG | - | chr1.4:784498-784517 | MS.gene64009:CDS | 60.0% | |
| AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1.4:784122-784141 | MS.gene64009:intron | 60.0% | |
| CTTTGCGCTGTGCCTGGATG+CGG | - | chr1.4:784408-784427 | MS.gene64009:CDS | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | - | chr1.4:784129-784148 | MS.gene64009:intron | 60.0% | |
| GCATCCAGGCACAGCGCAAA+GGG | + | chr1.4:784409-784428 | None:intergenic | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | + | chr1.4:784353-784372 | None:intergenic | 60.0% | |
| ! | GGTGGTGTCGGAGGAGGAAA+TGG | - | chr1.4:784599-784618 | MS.gene64009:intron | 60.0% |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1.4:784375-784394 | MS.gene64009:CDS | 60.0% |
| AATCCCCGGTGTGCCGCAGA+TGG | - | chr1.4:784318-784337 | MS.gene64009:intron | 65.0% | |
| AGGCACAGCGCAAAGGGTGG+AGG | + | chr1.4:784403-784422 | None:intergenic | 65.0% | |
| CGCATCCAGGCACAGCGCAA+AGG | + | chr1.4:784410-784429 | None:intergenic | 65.0% | |
| CGCCACGCGCTTCACTTTCC+CGG | + | chr1.4:784565-784584 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1.4:784563-784582 | MS.gene64009:CDS | 65.0% | |
| CGTTGCCATCTGCGGCACAC+CGG | + | chr1.4:784326-784345 | None:intergenic | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1.4:784566-784585 | MS.gene64009:CDS | 65.0% | |
| GTTGCCATCTGCGGCACACC+GGG | + | chr1.4:784325-784344 | None:intergenic | 65.0% | |
| TCCACCCTTTGCGCTGTGCC+TGG | - | chr1.4:784402-784421 | MS.gene64009:CDS | 65.0% | |
| TCCAGGCACAGCGCAAAGGG+TGG | + | chr1.4:784406-784425 | None:intergenic | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1.4:784560-784579 | MS.gene64009:CDS | 65.0% | |
| TTGCCATCTGCGGCACACCG+GGG | + | chr1.4:784324-784343 | None:intergenic | 65.0% | |
| ! | GGAAGGTGCACCGGTGGTGT+CGG | - | chr1.4:784587-784606 | MS.gene64009:CDS | 65.0% |
| ! | AGGTGCACCGGTGGTGTCGG+AGG | - | chr1.4:784590-784609 | MS.gene64009:CDS | 70.0% |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1.4:784578-784597 | MS.gene64009:CDS | 70.0% |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1.4:784570-784589 | MS.gene64009:CDS | 70.0% |
| ! | TGCACCGGTGGTGTCGGAGG+AGG | - | chr1.4:784593-784612 | MS.gene64009:CDS | 70.0% |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1.4:784581-784600 | MS.gene64009:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 780684 | 784743 | 780684 | ID=MS.gene64009 |
| chr1.4 | mRNA | 780684 | 784743 | 780684 | ID=MS.gene64009.t1;Parent=MS.gene64009 |
| chr1.4 | exon | 784700 | 784743 | 784700 | ID=MS.gene64009.t1.exon1;Parent=MS.gene64009.t1 |
| chr1.4 | CDS | 784700 | 784743 | 784700 | ID=cds.MS.gene64009.t1;Parent=MS.gene64009.t1 |
| chr1.4 | exon | 784357 | 784617 | 784357 | ID=MS.gene64009.t1.exon2;Parent=MS.gene64009.t1 |
| chr1.4 | CDS | 784357 | 784617 | 784357 | ID=cds.MS.gene64009.t1;Parent=MS.gene64009.t1 |
| chr1.4 | exon | 783595 | 783695 | 783595 | ID=MS.gene64009.t1.exon3;Parent=MS.gene64009.t1 |
| chr1.4 | CDS | 783595 | 783695 | 783595 | ID=cds.MS.gene64009.t1;Parent=MS.gene64009.t1 |
| chr1.4 | exon | 780684 | 781303 | 780684 | ID=MS.gene64009.t1.exon4;Parent=MS.gene64009.t1 |
| chr1.4 | CDS | 780684 | 781303 | 780684 | ID=cds.MS.gene64009.t1;Parent=MS.gene64009.t1 |
| Gene Sequence |
| Protein sequence |
