AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64076

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64076.t1 MTR_3g452660 91.525 295 18 3 1 292 1 291 2.37e-180 498
MS.gene64076.t1 MTR_5g017950 46.642 268 84 10 2 228 3 252 9.94e-61 196
MS.gene64076.t1 MTR_3g073690 74.576 118 28 2 1 117 2 118 1.16e-55 179
MS.gene64076.t1 MTR_4g105170 55.944 143 60 1 5 144 9 151 5.03e-48 159
MS.gene64076.t1 MTR_7g033800 66.667 108 36 0 4 111 8 115 3.70e-47 156
MS.gene64076.t1 MTR_6g005070 65.455 110 38 0 2 111 4 113 7.14e-47 154
MS.gene64076.t1 MTR_3g077240 65.179 112 39 0 2 113 5 116 7.88e-47 155
MS.gene64076.t1 MTR_8g040900 69.091 110 34 0 1 110 1 110 8.76e-46 154
MS.gene64076.t1 MTR_6g005080 63.551 107 39 0 4 110 7 113 2.16e-44 148
MS.gene64076.t1 MTR_5g083230 50.000 148 59 3 5 147 4 141 3.74e-44 148
MS.gene64076.t1 MTR_3g071590 45.033 151 70 2 3 150 4 144 4.67e-42 142
MS.gene64076.t1 MTR_3g031660 55.140 107 48 0 1 107 1 107 1.10e-40 139
MS.gene64076.t1 MTR_8g079660 39.437 213 105 5 7 214 8 201 1.83e-40 141
MS.gene64076.t1 MTR_4g083680 60.396 101 40 0 6 106 14 114 1.07e-39 137
MS.gene64076.t1 MTR_5g083960 55.963 109 48 0 4 112 36 144 1.22e-39 137
MS.gene64076.t1 MTR_3g094690 57.009 107 46 0 6 112 46 152 4.01e-39 137
MS.gene64076.t1 MTR_3g071420 58.824 102 42 0 4 105 11 112 2.73e-38 134
MS.gene64076.t1 MTR_8g079620 38.462 247 106 7 7 234 8 227 6.85e-38 134
MS.gene64076.t1 MTR_5g083010 56.190 105 46 0 4 108 8 112 9.40e-38 132
MS.gene64076.t1 MTR_2g068760 53.704 108 50 0 6 113 12 119 2.06e-37 130
MS.gene64076.t1 MTR_3g094690 56.075 107 46 1 6 112 46 151 3.49e-37 132
MS.gene64076.t1 MTR_2g093310 44.966 149 79 1 6 151 32 180 3.84e-37 131
MS.gene64076.t1 MTR_1g070220 59.048 105 42 1 3 106 11 115 7.06e-36 128
MS.gene64076.t1 MTR_7g096530 53.448 116 46 2 1 108 1 116 4.93e-34 123
MS.gene64076.t1 MTR_1g095850 53.922 102 47 0 8 109 73 174 6.02e-34 124
MS.gene64076.t1 MTR_4g060950 45.455 132 69 2 6 136 23 152 8.54e-34 122
MS.gene64076.t1 MTR_5g075020 56.604 106 46 0 6 111 42 147 1.46e-33 122
MS.gene64076.t1 MTR_5g093010 43.357 143 74 2 8 146 6 145 1.78e-33 120
MS.gene64076.t1 MTR_5g075020 56.604 106 46 0 6 111 46 151 2.12e-33 122
MS.gene64076.t1 MTR_7g028905 49.091 110 56 0 6 115 4 113 3.76e-33 118
MS.gene64076.t1 MTR_8g079580 43.125 160 69 4 7 165 8 146 6.15e-33 121
MS.gene64076.t1 MTR_7g096610 50.877 114 55 1 1 113 2 115 3.25e-32 119
MS.gene64076.t1 MTR_8g036085 52.336 107 50 1 7 112 23 129 1.38e-31 117
MS.gene64076.t1 MTR_7g074990 55.882 102 44 1 7 107 20 121 1.71e-31 117
MS.gene64076.t1 MTR_1g070205 45.385 130 69 2 7 134 12 141 1.35e-30 115
MS.gene64076.t1 MTR_5g080470 37.725 167 87 5 1 157 1 160 2.82e-30 113
MS.gene64076.t1 MTR_8g036105 50.893 112 54 1 7 117 18 129 4.69e-30 113
MS.gene64076.t1 MTR_6g027710 45.299 117 60 2 6 118 39 155 7.72e-29 110
MS.gene64076.t1 MTR_7g075230 52.778 108 48 2 7 111 12 119 2.53e-28 108
MS.gene64076.t1 MTR_6g011250 32.979 188 103 4 1 185 3 170 8.18e-28 106
MS.gene64076.t1 MTR_6g027700 42.991 107 60 1 1 106 1 107 8.62e-26 101
MS.gene64076.t1 MTR_6g011200 43.925 107 55 2 5 108 7 111 3.91e-24 98.6
MS.gene64076.t1 MTR_6g011230 41.584 101 59 0 4 104 8 108 1.41e-23 95.9
MS.gene64076.t1 MTR_4g099230 41.176 102 59 1 8 108 3 104 2.00e-23 94.0
MS.gene64076.t1 MTR_4g107450 45.000 100 55 0 8 107 11 110 2.31e-22 94.7
MS.gene64076.t1 MTR_5g085390 43.519 108 60 1 5 111 7 114 7.21e-21 89.4
MS.gene64076.t1 MTR_8g017090 37.864 103 64 0 8 110 13 115 1.50e-20 89.7
MS.gene64076.t1 MTR_2g100020 33.663 101 67 0 8 108 20 120 1.60e-16 78.2
MS.gene64076.t1 MTR_4g088035 33.684 95 56 1 6 100 5 92 1.10e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64076.t1 AT5G66870 63.309 139 50 1 1 139 1 138 6.93e-54 178
MS.gene64076.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene64076.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene64076.t1 AT2G23660 68.224 107 34 0 4 110 2 108 4.98e-49 165
MS.gene64076.t1 AT5G63090 65.179 112 39 0 2 113 6 117 1.07e-47 158
MS.gene64076.t1 AT5G63090 65.179 112 39 0 2 113 6 117 1.07e-47 158
MS.gene64076.t1 AT5G63090 65.179 112 39 0 2 113 6 117 1.07e-47 158
MS.gene64076.t1 AT5G63090 65.179 112 39 0 2 113 6 117 1.07e-47 158
MS.gene64076.t1 AT3G27650 65.421 107 37 0 4 110 36 142 6.55e-46 152
MS.gene64076.t1 AT1G65620 69.725 109 33 0 2 110 4 112 5.45e-45 151
MS.gene64076.t1 AT1G65620 69.725 109 33 0 2 110 4 112 5.45e-45 151
MS.gene64076.t1 AT1G65620 69.725 109 33 0 2 110 4 112 5.45e-45 151
MS.gene64076.t1 AT1G65620 69.725 109 33 0 2 110 4 112 5.45e-45 151
MS.gene64076.t1 AT1G65620 69.725 109 33 0 2 110 4 112 5.45e-45 151
MS.gene64076.t1 AT2G30130 54.783 115 51 1 5 118 6 120 1.95e-41 142
MS.gene64076.t1 AT1G31320 65.909 88 30 0 6 93 12 99 3.05e-38 133
MS.gene64076.t1 AT1G07900 44.375 160 81 2 6 161 32 187 5.87e-38 133
MS.gene64076.t1 AT3G26660 53.465 101 47 0 8 108 6 106 2.41e-37 129
MS.gene64076.t1 AT3G26620 53.465 101 47 0 8 108 6 106 2.62e-37 129
MS.gene64076.t1 AT3G11090 55.556 108 48 0 4 111 8 115 7.25e-37 129
MS.gene64076.t1 AT2G30340 50.000 118 59 0 6 123 52 169 1.13e-36 132
MS.gene64076.t1 AT2G30340 50.000 118 59 0 6 123 51 168 1.32e-36 132
MS.gene64076.t1 AT2G40470 48.227 141 59 2 6 146 19 145 2.85e-36 129
MS.gene64076.t1 AT2G28500 49.242 132 66 1 6 136 54 185 3.49e-36 129
MS.gene64076.t1 AT2G40470 48.227 141 59 2 6 146 44 170 5.25e-36 129
MS.gene64076.t1 AT1G16530 57.282 103 43 1 6 107 13 115 5.27e-35 124
MS.gene64076.t1 AT2G42430 53.774 106 48 1 6 110 14 119 4.44e-34 124
MS.gene64076.t1 AT3G03760 55.340 103 45 1 6 107 50 152 5.01e-33 122
MS.gene64076.t1 AT3G58190 51.456 103 49 1 7 108 11 113 9.97e-32 117
MS.gene64076.t1 AT2G42440 49.533 107 53 1 1 106 1 107 7.57e-31 116
MS.gene64076.t1 AT3G50510 41.176 136 75 1 1 131 6 141 8.12e-31 114
MS.gene64076.t1 AT3G50510 41.176 136 75 1 1 131 6 141 8.12e-31 114
MS.gene64076.t1 AT2G31310 50.980 102 49 1 6 106 6 107 4.33e-30 112
MS.gene64076.t1 AT4G00210 52.427 103 48 1 7 108 11 113 2.83e-29 111
MS.gene64076.t1 AT2G45420 52.885 104 48 1 10 112 40 143 3.00e-29 112
MS.gene64076.t1 AT4G00220 51.923 104 49 1 10 112 20 123 5.06e-29 110
MS.gene64076.t1 AT5G06080 45.690 116 62 1 1 115 1 116 1.88e-27 105
MS.gene64076.t1 AT2G45410 50.000 114 52 2 10 118 19 132 7.32e-27 104
MS.gene64076.t1 AT3G13850 39.806 103 62 0 8 110 37 139 1.89e-24 99.8
MS.gene64076.t1 AT5G35900 43.137 102 58 0 8 109 6 107 3.55e-24 97.4
MS.gene64076.t1 AT3G47870 39.806 103 62 0 8 110 37 139 6.86e-23 96.7
MS.gene64076.t1 AT1G72980 37.500 104 65 0 4 107 10 113 7.66e-19 83.6
MS.gene64076.t1 AT1G06280 36.364 110 68 1 8 117 25 132 4.33e-17 78.6
MS.gene64076.t1 AT4G22700 36.538 104 64 2 8 110 6 108 2.17e-15 73.6
MS.gene64076.t1 AT2G19820 34.066 91 59 1 4 93 9 99 1.04e-12 64.3
MS.gene64076.t1 AT5G15060 42.466 73 40 1 8 78 18 90 5.88e-12 62.8

Find 74 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGCCGCCGGCGGCGG+TGG 0.201583 3.4:-44001563 MS.gene64076:CDS
ACAATGGAATTCGCAGTTTC+CGG 0.220426 3.4:-44001852 MS.gene64076:CDS
CAGTGCTTGTTGATGAATTC+TGG 0.277883 3.4:-44001905 MS.gene64076:CDS
TCTGGCTCATCCTTTGGTTA+TGG 0.305666 3.4:-44001609 MS.gene64076:CDS
TGCTGATCTGGCTCATCCTT+TGG 0.313128 3.4:-44001615 MS.gene64076:CDS
CTGGCTCATCCTTTGGTTAT+GGG 0.325673 3.4:-44001608 MS.gene64076:CDS
ATCTCTTGAGGAAAATTGTT+AGG 0.328058 3.4:+44001815 None:intergenic
GTGGTGCCGCCGGCGGCGGT+GGG 0.330973 3.4:-44001562 MS.gene64076:CDS
CGTATAAAAGACCCGGTCTA+TGG 0.361454 3.4:-44002037 MS.gene64076:CDS
GGTGCCGCCGGCGGCGGTGG+GGG 0.362257 3.4:-44001560 MS.gene64076:CDS
TGTTTCTGATCATGCTGATC+TGG 0.376937 3.4:-44001627 MS.gene64076:CDS
TGGTGCCGCCGGCGGCGGTG+GGG 0.377693 3.4:-44001561 MS.gene64076:CDS
CAATGGAATTCGCAGTTTCC+GGG 0.386239 3.4:-44001851 MS.gene64076:CDS
AACAAAAGCTGTGCCTCAAC+TGG 0.391954 3.4:+44001467 None:intergenic
TGAAGACGCGGTGAAATCTT+TGG 0.393603 3.4:-44002077 MS.gene64076:CDS
TTGAGGATTCAAATTATAAC+CGG 0.410153 3.4:+44001934 None:intergenic
CTTAGGTCTGGTGCTGGTGG+TGG 0.415836 3.4:-44001701 MS.gene64076:CDS
CAAGAGATGGTTGGAGGAGG+TGG 0.424027 3.4:-44001800 MS.gene64076:CDS
AGTGGTGGTGCCGCCGGCGG+CGG 0.428715 3.4:-44001566 MS.gene64076:CDS
CAAGAGTATTTGCTTAGGTC+TGG 0.436612 3.4:-44001713 MS.gene64076:CDS
GAGTTTCTCTTAACTTCTGT+TGG 0.444328 3.4:+44001990 None:intergenic
AAGATTTCACCGCGTCTTCA+CGG 0.446492 3.4:+44002080 None:intergenic
GCGAATGTTCACCGTGTCTT+CGG 0.450379 3.4:-44002148 MS.gene64076:CDS
GGACATCAGATGGGTCCTGC+TGG 0.450389 3.4:-44001662 MS.gene64076:CDS
AACAAGCACTGCATGGTTTG+AGG 0.465438 3.4:+44001917 None:intergenic
CATTGTTGCTGCTGCTGCTG+AGG 0.468729 3.4:+44001869 None:intergenic
TCTCTTGAGGAAAATTGTTA+GGG 0.494095 3.4:+44001816 None:intergenic
TGCTGGTGGTGGATATCAGA+TGG 0.503769 3.4:-44001690 MS.gene64076:CDS
GGTGCTAGTGGTGGTGCCGC+CGG 0.504460 3.4:-44001572 MS.gene64076:CDS
GATGGGTGGTGGACATCAGA+TGG 0.509082 3.4:-44001672 MS.gene64076:CDS
GGTGGATATCAGATGGGTGG+TGG 0.514995 3.4:-44001683 MS.gene64076:CDS
ACAGCAACACCACCACCAGC+AGG 0.524955 3.4:+44001647 None:intergenic
CCTCAAGAGATGGTTGGAGG+AGG 0.527135 3.4:-44001803 MS.gene64076:CDS
CTCCACAAGAGTATTTGCTT+AGG 0.529751 3.4:-44001718 MS.gene64076:CDS
TCACCAGCTTCTTGATTCTG+TGG 0.531207 3.4:+44001440 None:intergenic
TTTCCTCAAGAGATGGTTGG+AGG 0.535089 3.4:-44001806 MS.gene64076:CDS
TATTTGCTTAGGTCTGGTGC+TGG 0.537196 3.4:-44001707 MS.gene64076:CDS
CAGATGGGTCCTGCTGGTGG+TGG 0.541145 3.4:-44001656 MS.gene64076:CDS
TTGCTTAGGTCTGGTGCTGG+TGG 0.541283 3.4:-44001704 MS.gene64076:CDS
CATCAGATGGGTCCTGCTGG+TGG 0.541888 3.4:-44001659 MS.gene64076:CDS
TCAAAATTTCCCATAACCAA+AGG 0.543574 3.4:+44001599 None:intergenic
AATCAAGAAGCTGGTGAGGA+TGG 0.547877 3.4:-44001434 MS.gene64076:CDS
TTTGAAAGAGCTTGACGTGA+AGG 0.550279 3.4:-44002104 MS.gene64076:CDS
CATGAGCTTCAGATGGGTGG+TGG 0.551899 3.4:-44001752 MS.gene64076:CDS
TGTTGCTCTCCTCCTTGCTG+TGG 0.554043 3.4:+44001524 None:intergenic
AGACCTACACATCCATAGAC+CGG 0.559621 3.4:+44002025 None:intergenic
ACAAGAACATGAGCTTCAGA+TGG 0.565035 3.4:-44001759 MS.gene64076:CDS
TCTCCACAGAATCAAGAAGC+TGG 0.567957 3.4:-44001443 MS.gene64076:CDS
GCTGGTGGTGGATATCAGAT+GGG 0.568261 3.4:-44001689 MS.gene64076:CDS
CGTTGCTTGCACCGAAGACA+CGG 0.571833 3.4:+44002137 None:intergenic
CAACAACATAATTATCATGT+TGG 0.574402 3.4:-44001506 MS.gene64076:CDS
GCTAGTGGTGGTGCCGCCGG+CGG 0.577997 3.4:-44001569 MS.gene64076:CDS
GACCTAAGCAAATACTCTTG+TGG 0.580143 3.4:+44001716 None:intergenic
CTCAGCAGCAGCAGCAACAA+TGG 0.590727 3.4:-44001868 MS.gene64076:CDS
CAAGAACATGAGCTTCAGAT+GGG 0.592057 3.4:-44001758 MS.gene64076:CDS
AGAAACTTGCATGCTGCACA+TGG 0.594029 3.4:+44002238 None:intergenic
ATGGGTGGTGGACATCAGAT+GGG 0.608656 3.4:-44001671 MS.gene64076:CDS
ATTCATCAACAAGCACTGCA+TGG 0.613761 3.4:+44001910 None:intergenic
ACAGAATCAAGAAGCTGGTG+AGG 0.614291 3.4:-44001438 MS.gene64076:CDS
GAACATGAGCTTCAGATGGG+TGG 0.616835 3.4:-44001755 MS.gene64076:CDS
GACCCGGTCTATGGATGTGT+AGG 0.616889 3.4:-44002028 MS.gene64076:CDS
GGTGAGGATGGTAAAAGTGT+TGG 0.628808 3.4:-44001422 MS.gene64076:CDS
GGTGAAATCTTTGGCATACG+AGG 0.628886 3.4:-44002068 MS.gene64076:CDS
TGCTCATGCTAATCCAGTTG+AGG 0.630057 3.4:-44001480 MS.gene64076:CDS
TGAACATTCGCGAATCGCTG+TGG 0.632773 3.4:+44002160 None:intergenic
GGTGGTGGATATCAGATGGG+TGG 0.634173 3.4:-44001686 MS.gene64076:CDS
GACCTACACATCCATAGACC+GGG 0.636051 3.4:+44002026 None:intergenic
CGTGAAGGACCGTGAAGACG+CGG 0.637430 3.4:-44002089 MS.gene64076:CDS
CCTCCTCCAACCATCTCTTG+AGG 0.638399 3.4:+44001803 None:intergenic
AGAGTCTCGTATAAAAGACC+CGG 0.647723 3.4:-44002044 MS.gene64076:CDS
TTTGACAATGGTGCTAGTGG+TGG 0.649859 3.4:-44001581 MS.gene64076:CDS
CATTATCAGATTCCACAGCA+AGG 0.677379 3.4:-44001536 MS.gene64076:CDS
AACTCAAAATGAACTCACTG+TGG 0.711640 3.4:-44001972 MS.gene64076:CDS
TATCAGATTCCACAGCAAGG+AGG 0.736256 3.4:-44001533 MS.gene64076:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAACAACATAATTATCATGT+TGG - chr3.4:44002150-44002169 MS.gene64076:CDS 25.0%
! TTGAGGATTCAAATTATAAC+CGG + chr3.4:44001725-44001744 None:intergenic 25.0%
ATCTCTTGAGGAAAATTGTT+AGG + chr3.4:44001844-44001863 None:intergenic 30.0%
TCAAAATTTCCCATAACCAA+AGG + chr3.4:44002060-44002079 None:intergenic 30.0%
TCTCTTGAGGAAAATTGTTA+GGG + chr3.4:44001843-44001862 None:intergenic 30.0%
TTAGGGTAATTCAAAAAACC+CGG + chr3.4:44001826-44001845 None:intergenic 30.0%
! TAACAATTTTCCTCAAGAGA+TGG - chr3.4:44001843-44001862 MS.gene64076:CDS 30.0%
!! GTTATGGGAAATTTTGACAA+TGG - chr3.4:44002063-44002082 MS.gene64076:CDS 30.0%
AACTCAAAATGAACTCACTG+TGG - chr3.4:44001684-44001703 MS.gene64076:CDS 35.0%
GAGTTTCTCTTAACTTCTGT+TGG + chr3.4:44001669-44001688 None:intergenic 35.0%
! AATTTTCCTCAAGAGATGGT+TGG - chr3.4:44001847-44001866 MS.gene64076:CDS 35.0%
!! AATTTTGACAATGGTGCTAG+TGG - chr3.4:44002072-44002091 MS.gene64076:CDS 35.0%
ACAAGAACATGAGCTTCAGA+TGG - chr3.4:44001897-44001916 MS.gene64076:CDS 40.0%
ACAATGGAATTCGCAGTTTC+CGG - chr3.4:44001804-44001823 MS.gene64076:CDS 40.0%
AGAGTCTCGTATAAAAGACC+CGG - chr3.4:44001612-44001631 MS.gene64076:CDS 40.0%
CAAGAACATGAGCTTCAGAT+GGG - chr3.4:44001898-44001917 MS.gene64076:CDS 40.0%
CATTATCAGATTCCACAGCA+AGG - chr3.4:44002120-44002139 MS.gene64076:CDS 40.0%
GACCTAAGCAAATACTCTTG+TGG + chr3.4:44001943-44001962 None:intergenic 40.0%
TTTGAAAGAGCTTGACGTGA+AGG - chr3.4:44001552-44001571 MS.gene64076:CDS 40.0%
! ATTCATCAACAAGCACTGCA+TGG + chr3.4:44001749-44001768 None:intergenic 40.0%
! CAGTGCTTGTTGATGAATTC+TGG - chr3.4:44001751-44001770 MS.gene64076:CDS 40.0%
! TGTTTCTGATCATGCTGATC+TGG - chr3.4:44002029-44002048 MS.gene64076:CDS 40.0%
!! CAAGAGTATTTGCTTAGGTC+TGG - chr3.4:44001943-44001962 MS.gene64076:CDS 40.0%
!! CTCCACAAGAGTATTTGCTT+AGG - chr3.4:44001938-44001957 MS.gene64076:CDS 40.0%
!! GGATTTTCAGGGAGAAAGTA+AGG + chr3.4:44001478-44001497 None:intergenic 40.0%
AACAAAAGCTGTGCCTCAAC+TGG + chr3.4:44002192-44002211 None:intergenic 45.0%
AAGATTTCACCGCGTCTTCA+CGG + chr3.4:44001579-44001598 None:intergenic 45.0%
AATCAAGAAGCTGGTGAGGA+TGG - chr3.4:44002222-44002241 MS.gene64076:CDS 45.0%
ACAGAATCAAGAAGCTGGTG+AGG - chr3.4:44002218-44002237 MS.gene64076:CDS 45.0%
AGAAACTTGCATGCTGCACA+TGG + chr3.4:44001421-44001440 None:intergenic 45.0%
AGACCTACACATCCATAGAC+CGG + chr3.4:44001634-44001653 None:intergenic 45.0%
CAATGGAATTCGCAGTTTCC+GGG - chr3.4:44001805-44001824 MS.gene64076:CDS 45.0%
CGTATAAAAGACCCGGTCTA+TGG - chr3.4:44001619-44001638 MS.gene64076:CDS 45.0%
CTGGCTCATCCTTTGGTTAT+GGG - chr3.4:44002048-44002067 MS.gene64076:CDS 45.0%
GGTGAAATCTTTGGCATACG+AGG - chr3.4:44001588-44001607 MS.gene64076:CDS 45.0%
TATCAGATTCCACAGCAAGG+AGG - chr3.4:44002123-44002142 MS.gene64076:CDS 45.0%
TATTTGCTTAGGTCTGGTGC+TGG - chr3.4:44001949-44001968 MS.gene64076:CDS 45.0%
TCACCAGCTTCTTGATTCTG+TGG + chr3.4:44002219-44002238 None:intergenic 45.0%
TCTCCACAGAATCAAGAAGC+TGG - chr3.4:44002213-44002232 MS.gene64076:CDS 45.0%
TGAAGACGCGGTGAAATCTT+TGG - chr3.4:44001579-44001598 MS.gene64076:CDS 45.0%
TGCTCATGCTAATCCAGTTG+AGG - chr3.4:44002176-44002195 MS.gene64076:CDS 45.0%
TTTCCTCAAGAGATGGTTGG+AGG - chr3.4:44001850-44001869 MS.gene64076:CDS 45.0%
! AACAAGCACTGCATGGTTTG+AGG + chr3.4:44001742-44001761 None:intergenic 45.0%
! CGAATCGCTGTGGATTTTCA+GGG + chr3.4:44001489-44001508 None:intergenic 45.0%
! GGTGAGGATGGTAAAAGTGT+TGG - chr3.4:44002234-44002253 MS.gene64076:CDS 45.0%
! TCTGGCTCATCCTTTGGTTA+TGG - chr3.4:44002047-44002066 MS.gene64076:CDS 45.0%
! TTTGACAATGGTGCTAGTGG+TGG - chr3.4:44002075-44002094 MS.gene64076:CDS 45.0%
GAACATGAGCTTCAGATGGG+TGG - chr3.4:44001901-44001920 MS.gene64076:CDS 50.0%
GACCTACACATCCATAGACC+GGG + chr3.4:44001633-44001652 None:intergenic 50.0%
GCGAATGTTCACCGTGTCTT+CGG - chr3.4:44001508-44001527 MS.gene64076:CDS 50.0%
GTGGCGAAAAAAGAACTCGC+CGG - chr3.4:44001703-44001722 MS.gene64076:CDS 50.0%
TGAACATTCGCGAATCGCTG+TGG + chr3.4:44001499-44001518 None:intergenic 50.0%
! GCGAATCGCTGTGGATTTTC+AGG + chr3.4:44001490-44001509 None:intergenic 50.0%
! TGCTGATCTGGCTCATCCTT+TGG - chr3.4:44002041-44002060 MS.gene64076:CDS 50.0%
!! ATGGGTGGTGGACATCAGAT+GGG - chr3.4:44001985-44002004 MS.gene64076:CDS 50.0%
!! GCTGGTGGTGGATATCAGAT+GGG - chr3.4:44001967-44001986 MS.gene64076:CDS 50.0%
!! TGCTGGTGGTGGATATCAGA+TGG - chr3.4:44001966-44001985 MS.gene64076:CDS 50.0%
CAAGAGATGGTTGGAGGAGG+TGG - chr3.4:44001856-44001875 MS.gene64076:CDS 55.0%
CATGAGCTTCAGATGGGTGG+TGG - chr3.4:44001904-44001923 MS.gene64076:CDS 55.0%
CATTGTTGCTGCTGCTGCTG+AGG + chr3.4:44001790-44001809 None:intergenic 55.0%
CCTCAAGAGATGGTTGGAGG+AGG - chr3.4:44001853-44001872 MS.gene64076:CDS 55.0%
CCTCCTCCAACCATCTCTTG+AGG + chr3.4:44001856-44001875 None:intergenic 55.0%
CGTTGCTTGCACCGAAGACA+CGG + chr3.4:44001522-44001541 None:intergenic 55.0%
CTCAGCAGCAGCAGCAACAA+TGG - chr3.4:44001788-44001807 MS.gene64076:CDS 55.0%
GACCCGGTCTATGGATGTGT+AGG - chr3.4:44001628-44001647 MS.gene64076:CDS 55.0%
GGTGGATATCAGATGGGTGG+TGG - chr3.4:44001973-44001992 MS.gene64076:CDS 55.0%
TGTTGCTCTCCTCCTTGCTG+TGG + chr3.4:44002135-44002154 None:intergenic 55.0%
! TTGCTTAGGTCTGGTGCTGG+TGG - chr3.4:44001952-44001971 MS.gene64076:CDS 55.0%
!! GATGGGTGGTGGACATCAGA+TGG - chr3.4:44001984-44002003 MS.gene64076:CDS 55.0%
!! GGTGGTGGATATCAGATGGG+TGG - chr3.4:44001970-44001989 MS.gene64076:CDS 55.0%
ACAGCAACACCACCACCAGC+AGG + chr3.4:44002012-44002031 None:intergenic 60.0%
CATCAGATGGGTCCTGCTGG+TGG - chr3.4:44001997-44002016 MS.gene64076:CDS 60.0%
CGTGAAGGACCGTGAAGACG+CGG - chr3.4:44001567-44001586 MS.gene64076:CDS 60.0%
GGACATCAGATGGGTCCTGC+TGG - chr3.4:44001994-44002013 MS.gene64076:CDS 60.0%
!! CTTAGGTCTGGTGCTGGTGG+TGG - chr3.4:44001955-44001974 MS.gene64076:CDS 60.0%
ATAATGACCCCCACCGCCGC+CGG + chr3.4:44002106-44002125 None:intergenic 65.0%
CAGATGGGTCCTGCTGGTGG+TGG - chr3.4:44002000-44002019 MS.gene64076:CDS 65.0%
!! GGTGCTAGTGGTGGTGCCGC+CGG - chr3.4:44002084-44002103 MS.gene64076:CDS 70.0%
!! GCTAGTGGTGGTGCCGCCGG+CGG - chr3.4:44002087-44002106 MS.gene64076:CDS 75.0%
! ATGACCCCCACCGCCGCCGG+CGG + chr3.4:44002103-44002122 None:intergenic 80.0%
!!! AGTGGTGGTGCCGCCGGCGG+CGG - chr3.4:44002090-44002109 MS.gene64076:CDS 80.0%
!!! GTGGTGCCGCCGGCGGCGGT+GGG - chr3.4:44002094-44002113 MS.gene64076:CDS 85.0%
!!! TGGTGCCGCCGGCGGCGGTG+GGG - chr3.4:44002095-44002114 MS.gene64076:CDS 85.0%
!! GGTGCCGCCGGCGGCGGTGG+GGG - chr3.4:44002096-44002115 MS.gene64076:CDS 90.0%
!!! GGTGGTGCCGCCGGCGGCGG+TGG - chr3.4:44002093-44002112 MS.gene64076:CDS 90.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 44001400 44002278 44001400 ID=MS.gene64076
chr3.4 mRNA 44001400 44002278 44001400 ID=MS.gene64076.t1;Parent=MS.gene64076
chr3.4 exon 44001400 44002278 44001400 ID=MS.gene64076.t1.exon1;Parent=MS.gene64076.t1
chr3.4 CDS 44001400 44002278 44001400 ID=cds.MS.gene64076.t1;Parent=MS.gene64076.t1
Gene Sequence

>MS.gene64076

ATGTCTTCATCAAATTCACCATGTGCAGCATGCAAGTTTCTCAGACGAAAGTGCACGCAAGAATGTGATTTTGCACCTTACTTTCTCCCTGAAAATCCACAGCGATTCGCGAATGTTCACCGTGTCTTCGGTGCAAGCAACGTCGCTAAGCTTTTGAAAGAGCTTGACGTGAAGGACCGTGAAGACGCGGTGAAATCTTTGGCATACGAGGCAGAGTCTCGTATAAAAGACCCGGTCTATGGATGTGTAGGTCTCATCTCATTTCTCCAACAGAAGTTAAGAGAAACTCAAAATGAACTCACTGTGGCGAAAAAAGAACTCGCCGGTTATAATTTGAATCCTCAAACCATGCAGTGCTTGTTGATGAATTCTGGAACAGTTTTAATGCCTCAGCAGCAGCAGCAACAATGGAATTCGCAGTTTCCGGGTTTTTTGAATTACCCTAACAATTTTCCTCAAGAGATGGTTGGAGGAGGTGGACTAGTTATGCAGCAGCAACAAGAACATGAGCTTCAGATGGGTGGTGGATATCAACTTACTCCACAAGAGTATTTGCTTAGGTCTGGTGCTGGTGGTGGATATCAGATGGGTGGTGGACATCAGATGGGTCCTGCTGGTGGTGGTGTTGCTGTTTCTGATCATGCTGATCTGGCTCATCCTTTGGTTATGGGAAATTTTGACAATGGTGCTAGTGGTGGTGCCGCCGGCGGCGGTGGGGGTCATTATCAGATTCCACAGCAAGGAGGAGAGCAACAACATAATTATCATGTTGGTGTTGCTCATGCTAATCCAGTTGAGGCACAGCTTTTGTTATCTCCACAGAATCAAGAAGCTGGTGAGGATGGTAAAAGTGTTGGTAGTGCTCATCGTTCAAGTTGA
Protein sequence

>MS.gene64076.t1

MSSSNSPCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELDVKDREDAVKSLAYEAESRIKDPVYGCVGLISFLQQKLRETQNELTVAKKELAGYNLNPQTMQCLLMNSGTVLMPQQQQQQWNSQFPGFLNYPNNFPQEMVGGGGLVMQQQQEHELQMGGGYQLTPQEYLLRSGAGGGYQMGGGHQMGPAGGGVAVSDHADLAHPLVMGNFDNGASGGAAGGGGGHYQIPQQGGEQQHNYHVGVAHANPVEAQLLLSPQNQEAGEDGKSVGSAHRSS