AlfalfaGEDB | MS.gene64112

M. sativa cultivar XinJiangDaYe / MS.gene64112

KEGG: K13424
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64112.t1	RHN56682.1	61.4	145	13	2	4	105	67	211	3.00E-36	161

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64112.t1	Q6B6R4	62.5	56	21	0	28	83	215	270	1.6e-14	80.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64112.t1	G7IXC7	61.4	145	13	2	4	105	183	327	2.2e-36	161.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene64112.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64112.t1	MTR_5g074200	61.379	145	13	2	4	105	183	327	3.76e-52	166
MS.gene64112.t1	MTR_5g093540	55.882	136	9	2	5	105	130	249	5.43e-39	130
MS.gene64112.t1	MTR_3g031220	54.667	75	29	2	12	83	176	248	7.77e-20	82.8
MS.gene64112.t1	MTR_3g031220	56.000	75	28	2	12	83	176	248	1.12e-19	82.8
MS.gene64112.t1	MTR_3g031220	65.789	38	13	0	33	70	365	402	8.28e-12	60.5
MS.gene64112.t1	MTR_5g074400	41.026	117	30	3	26	105	238	352	1.61e-19	82.4
MS.gene64112.t1	MTR_5g074400	68.421	38	12	0	33	70	420	457	5.46e-13	63.5
MS.gene64112.t1	MTR_7g100510	65.385	52	18	0	34	85	190	241	1.64e-18	79.3
MS.gene64112.t1	MTR_7g071120	58.621	58	24	0	26	83	159	216	8.01e-18	77.4
MS.gene64112.t1	MTR_7g071120	63.158	38	14	0	33	70	324	361	3.29e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64112.t1	AT2G38470	62.745	51	19	0	33	83	184	234	3.24e-18	78.6
MS.gene64112.t1	AT1G13960	62.264	53	20	0	33	85	76	128	5.59e-18	77.4
MS.gene64112.t1	AT1G13960	52.941	51	23	1	33	82	256	306	9.56e-12	60.1
MS.gene64112.t1	AT5G07100	61.538	52	19	1	33	83	24	75	9.15e-18	75.1
MS.gene64112.t1	AT5G07100	65.789	38	13	0	33	70	141	178	1.95e-12	60.8
MS.gene64112.t1	AT5G07100	61.538	52	19	1	33	83	24	75	9.15e-18	75.1
MS.gene64112.t1	AT5G07100	65.789	38	13	0	33	70	141	178	1.95e-12	60.8
MS.gene64112.t1	AT5G07100	61.538	52	19	1	33	83	24	75	9.15e-18	75.1
MS.gene64112.t1	AT5G07100	65.789	38	13	0	33	70	141	178	1.95e-12	60.8
MS.gene64112.t1	AT5G07100	61.538	52	19	1	33	83	24	75	9.15e-18	75.1

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Find 14 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGTCTTTAAGAAGA+AGG	0.406219	5.1:+50182242	MS.gene64112:CDS
AAGAGAAAGTAGCAAAAGGA+AGG	0.448078	5.1:+50182302	MS.gene64112:CDS
AAGGTTGAGATAACTATAGA+TGG	0.449611	5.1:+50182379	MS.gene64112:CDS
ACCATGATGATGGGTATAAT+TGG	0.246954	5.1:+50182269	MS.gene64112:CDS
AGAAGGATAAACCATGATGA+TGG	0.457113	5.1:+50182259	MS.gene64112:CDS
AGAGAAAGTAGCAAAAGGAA+GGG	0.578563	5.1:+50182303	MS.gene64112:CDS
ATCATTTGGAAGTGAACAAT+TGG	0.346812	5.1:+50182514	MS.gene64112:CDS
ATTATTGAGACACTATACAA+AGG	0.688284	5.1:+50182406	MS.gene64112:CDS
ATTGATACTGAAGACTTTGC+AGG	0.359791	5.1:-50182551	None:intergenic
GAAGCTATTATAAATGTACA+TGG	0.617639	5.1:+50182335	MS.gene64112:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTGAGATAACTATAGA+TGG	+	chr5.1:50182379-50182398	MS.gene64112:CDS	30.0%
ATCATTTGGAAGTGAACAAT+TGG	+	chr5.1:50182514-50182533	MS.gene64112:CDS	30.0%
TACTTGCAAGATCAATCATT+TGG	+	chr5.1:50182500-50182519	MS.gene64112:intron	30.0%
TATGAAGAGAAAGTAGCAAA+AGG	+	chr5.1:50182298-50182317	MS.gene64112:CDS	30.0%
AAGAGAAAGTAGCAAAAGGA+AGG	+	chr5.1:50182302-50182321	MS.gene64112:CDS	35.0%
AGAAGGATAAACCATGATGA+TGG	+	chr5.1:50182259-50182278	MS.gene64112:CDS	35.0%
AGAGAAAGTAGCAAAAGGAA+GGG	+	chr5.1:50182303-50182322	MS.gene64112:CDS	35.0%
ATTGATACTGAAGACTTTGC+AGG	-	chr5.1:50182554-50182573	None:intergenic	35.0%
GAAGGATAAACCATGATGAT+GGG	+	chr5.1:50182260-50182279	MS.gene64112:CDS	35.0%
TCCAATTATACCCATCATCA+TGG	-	chr5.1:50182273-50182292	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	50182178	50182577	50182178	ID=MS.gene64112
chr5.1	mRNA	50182178	50182577	50182178	ID=MS.gene64112.t1;Parent=MS.gene64112
chr5.1	exon	50182178	50182427	50182178	ID=MS.gene64112.t1.exon1;Parent=MS.gene64112.t1
chr5.1	CDS	50182178	50182427	50182178	ID=cds.MS.gene64112.t1;Parent=MS.gene64112.t1
chr5.1	exon	50182510	50182577	50182510	ID=MS.gene64112.t1.exon2;Parent=MS.gene64112.t1
chr5.1	CDS	50182510	50182577	50182510	ID=cds.MS.gene64112.t1;Parent=MS.gene64112.t1

Gene Sequence

>MS.gene64112

ATGGAAGCTGATGATATAGCTATAGAAGTTGATGCTGCAGATAGCAACAGAAATGAATTCCAACAAAATTTGTCTTTAAGAAGAAGGATAAACCATGATGATGGGTATAATTGGAAAAAGTATGAAGAGAAAGTAGCAAAAGGAAGGGAAAATCAAAGAAGCTATTATAAATGTACATGGCCTAATTGTTTTGTGAAGAAAAAGGTTGAGATAACTATAGATGGAGAAATTATTGAGACACTATACAAAGGTACACATAATCATTGTAAGCTAACGTCTTCAATGAAGAGGATCTCATCATCTGAGTATCTTTATTCACTTTTACTTGCAAGATCAATCATTTGGAAGTGAACAATTGGATTCTGATGAAGAACCTGCAAAGTCTTCAGTATCAATATGA

Protein sequence

>MS.gene64112.t1

MEADDIAIEVDAADSNRNEFQQNLSLRRRINHDDGYNWKKYEEKVAKGRENQRSYYKCTWPNCFVKKKVEITIDGEIIETLYKDQSFGSEQLDSDEEPAKSSVSI