AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64163

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64163.t1 MTR_6g087920 95.370 216 10 0 1 216 202 417 7.54e-149 421
MS.gene64163.t1 MTR_8g103240 70.455 220 63 2 2 221 218 435 6.83e-107 316
MS.gene64163.t1 MTR_4g103810 39.007 141 80 1 71 205 267 407 3.21e-29 113
MS.gene64163.t1 MTR_4g103810 39.007 141 80 1 71 205 377 517 4.60e-29 114
MS.gene64163.t1 MTR_6g080470 36.184 152 94 1 67 218 165 313 8.15e-29 112
MS.gene64163.t1 MTR_4g094430 40.769 130 75 2 70 199 160 287 8.04e-28 107
MS.gene64163.t1 MTR_3g085650 39.437 142 78 2 71 205 573 713 8.04e-28 110
MS.gene64163.t1 MTR_3g085650 39.437 142 78 2 71 205 573 713 8.67e-28 110
MS.gene64163.t1 MTR_3g085650 39.437 142 78 2 71 205 573 713 8.99e-28 110
MS.gene64163.t1 MTR_5g008860 41.722 151 81 6 70 217 297 443 2.95e-27 108
MS.gene64163.t1 MTR_8g080190 39.437 142 78 2 71 205 542 682 4.37e-27 108
MS.gene64163.t1 MTR_2g032060 37.692 130 79 2 70 199 160 287 9.58e-27 104
MS.gene64163.t1 MTR_3g040810 41.259 143 78 3 70 209 194 333 1.04e-26 107
MS.gene64163.t1 MTR_7g011800 43.704 135 73 3 70 203 277 409 1.30e-26 107
MS.gene64163.t1 MTR_3g040520 41.259 143 78 3 70 209 196 335 1.51e-26 106
MS.gene64163.t1 MTR_2g085200 38.750 160 87 5 63 217 284 437 1.54e-26 107
MS.gene64163.t1 MTR_4g078290 38.509 161 86 5 63 217 279 432 1.87e-26 107
MS.gene64163.t1 MTR_4g078290 38.509 161 86 5 63 217 279 432 1.94e-26 107
MS.gene64163.t1 MTR_4g118780 36.364 154 85 4 70 217 261 407 3.98e-26 105
MS.gene64163.t1 MTR_3g098760 38.562 153 83 5 70 217 254 400 1.11e-25 104
MS.gene64163.t1 MTR_7g114300 37.255 153 85 5 70 217 264 410 4.52e-25 102
MS.gene64163.t1 MTR_4g109090 39.216 153 82 5 70 217 114 260 4.96e-25 102
MS.gene64163.t1 MTR_2g020210 39.216 153 82 6 70 217 259 405 5.14e-25 102
MS.gene64163.t1 MTR_7g114300 37.255 153 85 5 70 217 264 410 7.25e-25 102
MS.gene64163.t1 MTR_4g109090 39.216 153 82 5 70 217 262 408 9.28e-25 102
MS.gene64163.t1 MTR_8g071230 39.535 129 77 1 71 199 156 283 1.03e-24 101
MS.gene64163.t1 MTR_4g087620 35.714 140 73 2 69 200 211 341 1.35e-24 100
MS.gene64163.t1 MTR_1g075610 35.659 129 80 1 71 199 183 308 1.55e-24 99.0
MS.gene64163.t1 MTR_6g013030 40.000 140 72 5 70 204 267 399 1.82e-24 101
MS.gene64163.t1 MTR_8g086000 35.971 139 87 1 69 207 189 325 2.57e-24 99.4
MS.gene64163.t1 MTR_8g086000 35.971 139 87 1 69 207 232 368 3.08e-24 99.4
MS.gene64163.t1 MTR_5g026960 37.209 129 80 1 71 199 156 283 4.52e-24 99.4
MS.gene64163.t1 MTR_1g081870 37.908 153 84 5 70 217 279 425 7.16e-24 99.4
MS.gene64163.t1 MTR_3g096960 37.671 146 79 2 72 205 189 334 7.65e-24 99.0
MS.gene64163.t1 MTR_7g078690 36.735 147 73 3 69 206 194 329 1.04e-23 97.4
MS.gene64163.t1 MTR_1g086370 37.589 141 84 2 71 211 114 250 1.82e-23 95.5
MS.gene64163.t1 MTR_3g460950 34.228 149 80 3 62 201 181 320 1.90e-23 96.7
MS.gene64163.t1 MTR_3g060330 34.228 149 80 3 62 201 181 320 1.90e-23 96.7
MS.gene64163.t1 MTR_3g054080 34.483 145 86 2 76 217 176 314 1.91e-23 97.4
MS.gene64163.t1 MTR_2g090405 35.948 153 87 4 70 217 298 444 2.67e-23 97.8
MS.gene64163.t1 MTR_1g086370 37.857 140 83 2 72 211 201 336 2.91e-23 96.3
MS.gene64163.t1 MTR_4g007750 37.209 129 78 2 71 199 178 303 3.37e-23 95.1
MS.gene64163.t1 MTR_1g086370 37.857 140 83 2 72 211 234 369 4.72e-23 96.3
MS.gene64163.t1 MTR_7g110060 37.143 140 84 2 72 211 234 369 1.41e-22 94.7
MS.gene64163.t1 MTR_1g084760 37.143 140 84 2 72 211 234 369 2.42e-22 94.4
MS.gene64163.t1 MTR_3g085650 38.211 123 68 2 71 186 573 694 7.54e-22 93.6
MS.gene64163.t1 MTR_3g112210 33.553 152 81 3 67 207 187 329 1.10e-21 92.0
MS.gene64163.t1 MTR_7g076030 34.667 150 89 3 72 221 300 440 1.73e-21 92.0
MS.gene64163.t1 MTR_5g010030 32.237 152 79 3 69 205 197 339 2.29e-21 91.3
MS.gene64163.t1 MTR_2g016490 36.923 130 80 1 72 201 199 326 2.69e-21 90.9
MS.gene64163.t1 MTR_7g076030 34.667 150 89 3 72 221 193 333 2.85e-21 90.9
MS.gene64163.t1 MTR_8g098845 34.000 150 88 4 69 209 208 355 3.07e-21 90.9
MS.gene64163.t1 MTR_4g117490 35.099 151 89 3 69 211 185 334 3.42e-21 91.7
MS.gene64163.t1 MTR_8g106960 34.437 151 90 3 69 211 278 427 4.11e-21 91.3
MS.gene64163.t1 MTR_2g083940 35.385 130 82 1 72 201 193 320 4.40e-21 90.5
MS.gene64163.t1 MTR_8g099770 34.810 158 96 4 63 217 240 393 4.50e-21 91.3
MS.gene64163.t1 MTR_2g005620 36.170 141 86 2 71 211 248 384 4.58e-21 90.9
MS.gene64163.t1 MTR_2g083940 35.385 130 82 1 72 201 247 374 5.20e-21 90.5
MS.gene64163.t1 MTR_7g110060 36.885 122 75 1 72 193 234 353 6.56e-21 89.7
MS.gene64163.t1 MTR_8g012450 35.606 132 79 2 71 199 156 284 6.63e-21 90.1
MS.gene64163.t1 MTR_8g106960 34.437 151 90 3 69 211 278 427 6.79e-21 90.9
MS.gene64163.t1 MTR_8g012450 35.606 132 79 2 71 199 156 284 7.47e-21 90.1
MS.gene64163.t1 MTR_4g117490 35.099 151 89 3 69 211 185 334 7.86e-21 90.5
MS.gene64163.t1 MTR_8g432510 34.899 149 88 3 72 220 298 437 1.07e-20 90.1
MS.gene64163.t1 MTR_7g114300 36.923 130 72 4 70 195 264 387 1.23e-20 89.4
MS.gene64163.t1 MTR_8g080190 45.455 88 47 1 71 158 542 628 1.42e-20 89.7
MS.gene64163.t1 MTR_7g114300 36.364 132 74 4 70 197 264 389 1.71e-20 89.0
MS.gene64163.t1 MTR_2g021330 33.775 151 91 3 69 211 185 334 6.87e-20 87.8
MS.gene64163.t1 MTR_2g021330 33.775 151 91 3 69 211 185 334 8.40e-20 87.0
MS.gene64163.t1 MTR_8g461270 33.077 130 77 2 74 199 212 335 3.54e-19 84.7
MS.gene64163.t1 MTR_8g028720 31.126 151 80 3 69 204 193 334 3.67e-19 85.1
MS.gene64163.t1 MTR_8g461040 38.816 152 82 4 69 211 186 335 4.89e-19 85.5
MS.gene64163.t1 MTR_4g061320 31.447 159 78 5 69 208 196 342 5.36e-19 84.7
MS.gene64163.t1 MTR_2g072840 38.346 133 79 2 69 199 95 226 3.36e-18 82.8
MS.gene64163.t1 MTR_1g098300 33.803 142 76 3 70 204 283 413 4.24e-18 82.8
MS.gene64163.t1 MTR_2g072840 38.346 133 79 2 69 199 185 316 4.64e-18 82.4
MS.gene64163.t1 MTR_6g079470 35.762 151 88 3 69 211 249 398 7.81e-18 82.0
MS.gene64163.t1 MTR_2g072840 38.346 133 79 2 69 199 185 316 1.32e-17 81.3
MS.gene64163.t1 MTR_5g091680 35.948 153 85 5 69 211 182 331 1.10e-16 78.6
MS.gene64163.t1 MTR_5g091680 35.948 153 85 5 69 211 180 329 1.16e-16 78.6
MS.gene64163.t1 MTR_5g091680 35.948 153 85 5 69 211 182 331 1.19e-16 78.2
MS.gene64163.t1 MTR_5g091680 35.948 153 85 5 69 211 182 331 1.42e-16 78.2
MS.gene64163.t1 MTR_3g060390 34.426 122 73 2 83 201 169 286 2.95e-16 76.6
MS.gene64163.t1 MTR_3g460980 34.426 122 73 2 83 201 173 290 3.89e-16 76.3
MS.gene64163.t1 MTR_4g087620 48.529 68 30 1 69 131 211 278 3.97e-16 75.5
MS.gene64163.t1 MTR_3g089510 33.775 151 91 3 69 211 185 334 6.85e-16 76.3
MS.gene64163.t1 MTR_3g089510 33.775 151 91 3 69 211 173 322 8.64e-16 75.9
MS.gene64163.t1 MTR_8g092290 35.294 153 87 4 65 213 293 437 2.03e-15 74.7
MS.gene64163.t1 MTR_4g061330 41.791 67 39 0 70 136 1 67 1.55e-14 68.9
MS.gene64163.t1 MTR_4g095670 32.624 141 74 5 74 200 273 406 5.87e-13 67.4
MS.gene64163.t1 MTR_5g015830 31.884 138 79 4 74 200 268 401 9.35e-13 67.0
MS.gene64163.t1 MTR_8g086010 30.075 133 75 2 69 200 259 374 1.08e-12 66.6
MS.gene64163.t1 MTR_8g106970 30.081 123 64 2 95 211 153 259 1.59e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64163.t1 AT4G28980 62.443 221 82 1 1 221 221 440 1.89e-97 292
MS.gene64163.t1 AT4G28980 62.443 221 82 1 1 221 221 440 1.89e-97 292
MS.gene64163.t1 AT4G28980 62.443 221 82 1 1 221 221 440 1.89e-97 292
MS.gene64163.t1 AT1G18040 37.584 149 90 1 70 218 166 311 7.47e-33 122
MS.gene64163.t1 AT1G66750 36.913 149 91 1 70 218 167 312 2.67e-32 120
MS.gene64163.t1 AT3G48750 43.077 130 72 2 70 199 160 287 1.85e-31 117
MS.gene64163.t1 AT1G73690 37.908 153 88 3 70 221 165 311 1.39e-30 116
MS.gene64163.t1 AT4G19110 39.231 130 78 1 70 199 99 227 1.26e-27 108
MS.gene64163.t1 AT4G19110 39.231 130 78 1 70 199 155 283 3.26e-27 108
MS.gene64163.t1 AT1G20930 37.594 133 80 1 71 203 181 310 3.33e-27 106
MS.gene64163.t1 AT4G19110 39.231 130 78 1 70 199 155 283 3.47e-27 108
MS.gene64163.t1 AT5G10270 39.310 145 82 3 68 209 195 336 3.92e-27 108
MS.gene64163.t1 AT1G67580 40.141 142 77 2 71 205 563 703 5.61e-27 108
MS.gene64163.t1 AT1G67580 40.141 142 77 2 71 205 563 703 5.61e-27 108
MS.gene64163.t1 AT1G74330 40.523 153 80 4 70 217 280 426 7.07e-27 108
MS.gene64163.t1 AT1G74330 40.523 153 80 4 70 217 280 426 7.44e-27 108
MS.gene64163.t1 AT1G74330 40.523 153 80 4 70 217 280 426 8.32e-27 108
MS.gene64163.t1 AT5G64960 39.310 145 82 3 68 209 142 283 1.74e-26 106
MS.gene64163.t1 AT5G50860 38.750 160 87 5 63 217 264 417 1.76e-26 106
MS.gene64163.t1 AT5G64960 39.310 145 82 3 68 209 195 336 2.23e-26 106
MS.gene64163.t1 AT4G10010 39.310 145 86 2 67 211 130 272 2.52e-26 105
MS.gene64163.t1 AT5G50860 38.750 160 87 5 63 217 264 417 2.59e-26 106
MS.gene64163.t1 AT3G01085 39.610 154 81 4 70 217 272 419 3.43e-26 106
MS.gene64163.t1 AT3G01085 39.610 154 81 4 70 217 272 419 3.43e-26 106
MS.gene64163.t1 AT3G01085 39.610 154 81 4 70 217 272 419 3.72e-26 105
MS.gene64163.t1 AT1G09600 41.379 145 74 5 70 209 320 458 4.55e-26 105
MS.gene64163.t1 AT4G10010 38.816 152 90 3 67 217 310 459 5.58e-26 105
MS.gene64163.t1 AT5G45430 40.310 129 76 1 71 199 156 283 9.71e-26 104
MS.gene64163.t1 AT5G45430 40.310 129 76 1 71 199 156 283 1.00e-25 104
MS.gene64163.t1 AT1G76540 36.842 133 81 1 71 203 179 308 1.09e-25 102
MS.gene64163.t1 AT1G71530 36.913 149 91 3 70 217 304 450 1.98e-25 103
MS.gene64163.t1 AT1G71530 36.913 149 91 3 70 217 304 450 2.80e-25 102
MS.gene64163.t1 AT1G18670 41.549 142 80 3 70 209 289 429 7.41e-25 102
MS.gene64163.t1 AT1G18670 41.549 142 80 3 70 209 289 429 7.74e-25 102
MS.gene64163.t1 AT1G18670 41.549 142 80 3 70 209 289 429 7.86e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 459 599 9.63e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 459 599 9.63e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 459 599 9.63e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 459 599 9.63e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 459 599 9.63e-25 102
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 325 465 9.85e-25 101
MS.gene64163.t1 AT5G63370 36.735 147 75 2 71 205 325 465 9.85e-25 101
MS.gene64163.t1 AT1G59580 38.514 148 71 3 69 207 189 325 1.05e-24 100
MS.gene64163.t1 AT1G59580 38.514 148 71 3 69 207 189 325 1.05e-24 100
MS.gene64163.t1 AT3G45640 34.641 153 80 3 69 210 194 337 3.55e-24 99.0
MS.gene64163.t1 AT5G39420 39.597 149 87 3 70 217 262 408 3.64e-24 100
MS.gene64163.t1 AT2G38620 37.209 129 78 2 71 199 116 241 9.90e-24 95.5
MS.gene64163.t1 AT4G22940 37.662 154 83 4 70 217 261 407 1.22e-23 98.6
MS.gene64163.t1 AT1G10210 37.143 140 84 3 69 207 189 325 1.64e-23 97.1
MS.gene64163.t1 AT1G10210 37.143 140 84 3 69 207 189 325 1.64e-23 97.1
MS.gene64163.t1 AT1G10210 37.143 140 84 3 69 207 189 325 1.64e-23 97.1
MS.gene64163.t1 AT4G22940 37.662 154 83 4 70 217 261 407 1.67e-23 97.8
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 1.69e-23 98.6
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 1.69e-23 98.6
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 1.69e-23 98.6
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 1.69e-23 98.6
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 1.69e-23 98.6
MS.gene64163.t1 AT3G54180 38.760 129 76 2 71 199 176 301 1.79e-23 95.9
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 2.31e-23 98.2
MS.gene64163.t1 AT5G14640 37.857 140 83 2 72 211 233 368 2.54e-23 97.1
MS.gene64163.t1 AT5G14640 37.857 140 83 2 72 211 233 368 2.54e-23 97.1
MS.gene64163.t1 AT5G44290 41.722 151 81 5 70 217 294 440 3.23e-23 97.4
MS.gene64163.t1 AT2G38620 37.209 129 78 2 71 199 178 303 3.36e-23 95.5
MS.gene64163.t1 AT1G33770 39.474 152 89 3 67 217 295 444 4.19e-23 97.4
MS.gene64163.t1 AT1G53050 37.748 151 87 4 70 217 291 437 8.13e-23 96.7
MS.gene64163.t1 AT1G53050 37.748 151 87 4 70 217 291 437 8.13e-23 96.7
MS.gene64163.t1 AT5G63610 36.735 147 79 4 72 205 194 339 1.49e-22 95.1
MS.gene64163.t1 AT1G57700 39.456 147 77 3 70 211 303 442 1.56e-22 95.5
MS.gene64163.t1 AT5G26751 37.143 140 84 2 72 211 228 363 2.99e-22 94.0
MS.gene64163.t1 AT1G73670 37.255 153 83 5 69 211 250 399 3.02e-22 94.7
MS.gene64163.t1 AT1G01560 34.437 151 75 3 69 204 196 337 3.83e-22 93.2
MS.gene64163.t1 AT1G03740 35.948 153 87 4 70 217 370 516 4.54e-22 94.4
MS.gene64163.t1 AT1G03740 35.948 153 87 4 70 217 370 516 4.73e-22 94.4
MS.gene64163.t1 AT2G18170 29.798 198 128 3 3 200 134 320 5.97e-22 92.8
MS.gene64163.t1 AT5G19010 35.762 151 88 3 69 211 185 334 6.76e-22 93.6
MS.gene64163.t1 AT3G05840 37.143 140 84 2 72 211 232 367 7.40e-22 92.8
MS.gene64163.t1 AT3G05840 37.143 140 84 2 72 211 232 367 7.40e-22 92.8
MS.gene64163.t1 AT3G59790 32.624 141 78 2 68 200 215 346 7.46e-22 92.8
MS.gene64163.t1 AT1G06390 36.154 130 81 1 72 201 229 356 7.74e-22 92.8
MS.gene64163.t1 AT1G06390 36.154 130 81 1 72 201 229 356 7.74e-22 92.8
MS.gene64163.t1 AT1G54610 35.507 138 79 3 70 203 275 406 8.24e-22 93.6
MS.gene64163.t1 AT1G54610 35.507 138 79 3 70 203 275 406 8.24e-22 93.6
MS.gene64163.t1 AT1G54610 35.507 138 79 3 70 203 275 406 8.24e-22 93.6
MS.gene64163.t1 AT4G36450 31.395 172 87 4 67 219 184 343 8.33e-22 92.4
MS.gene64163.t1 AT2G46070 34.043 141 75 2 69 200 197 328 1.23e-21 92.0
MS.gene64163.t1 AT5G63370 47.561 82 42 1 71 152 325 405 1.36e-21 92.0
MS.gene64163.t1 AT2G30980 36.154 130 81 1 72 201 231 358 1.41e-21 92.0
MS.gene64163.t1 AT5G63370 47.561 82 42 1 71 152 459 539 1.69e-21 92.4
MS.gene64163.t1 AT5G63370 47.561 82 42 1 71 152 459 539 1.69e-21 92.4
MS.gene64163.t1 AT2G46070 34.043 141 75 2 69 200 231 362 1.90e-21 91.7
MS.gene64163.t1 AT4G01370 35.374 147 75 3 69 206 199 334 1.90e-21 91.3
MS.gene64163.t1 AT4G11330 34.074 135 71 2 69 194 199 324 2.65e-21 90.9
MS.gene64163.t1 AT4G00720 37.500 128 78 1 72 199 297 422 2.98e-21 91.7
MS.gene64163.t1 AT2G01450 35.099 151 89 3 69 211 176 325 3.68e-21 91.3
MS.gene64163.t1 AT2G01450 35.099 151 89 3 69 211 176 325 3.68e-21 91.3
MS.gene64163.t1 AT2G01450 35.099 151 89 3 69 211 176 325 3.68e-21 91.3
MS.gene64163.t1 AT2G01450 35.099 151 89 3 69 211 176 325 3.68e-21 91.3
MS.gene64163.t1 AT1G57870 35.714 140 86 2 72 211 241 376 4.63e-21 90.9
MS.gene64163.t1 AT1G57870 35.714 140 86 2 72 211 241 376 4.63e-21 90.9
MS.gene64163.t1 AT1G57870 35.714 140 86 2 72 211 241 376 4.63e-21 90.9
MS.gene64163.t1 AT1G57870 35.714 140 86 2 72 211 241 376 6.06e-21 90.5
MS.gene64163.t1 AT1G01560 35.115 131 67 2 69 190 196 317 8.70e-21 89.4
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 156 284 1.05e-20 89.7
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 156 284 1.05e-20 89.7
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 156 284 1.17e-20 89.4
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 156 284 1.17e-20 89.7
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 165 293 1.22e-20 89.7
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 165 293 1.27e-20 89.4
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 164 292 1.74e-20 89.4
MS.gene64163.t1 AT4G13020 37.121 132 78 3 71 200 164 292 1.75e-20 89.4
MS.gene64163.t1 AT2G46070 34.074 135 71 2 69 194 197 322 2.35e-20 87.8
MS.gene64163.t1 AT4G18710 35.385 130 82 1 72 201 199 326 2.36e-20 88.6
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 114 250 5.40e-20 86.3
MS.gene64163.t1 AT2G43790 34.532 139 74 2 69 199 219 348 5.42e-20 87.4
MS.gene64163.t1 AT3G61160 34.286 140 88 2 72 211 261 396 8.45e-20 87.4
MS.gene64163.t1 AT3G61160 34.286 140 88 2 72 211 261 396 9.52e-20 87.0
MS.gene64163.t1 AT3G61160 34.286 140 88 2 72 211 268 403 9.90e-20 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT1G09840 34.752 141 88 2 71 211 241 377 1.01e-19 87.0
MS.gene64163.t1 AT3G14720 37.748 151 85 3 69 211 185 334 1.59e-19 87.0
MS.gene64163.t1 AT1G71530 34.615 130 83 2 70 199 304 431 1.80e-19 86.3
MS.gene64163.t1 AT1G53510 40.741 135 73 4 69 199 185 316 1.82e-19 86.7
MS.gene64163.t1 AT3G14720 37.748 151 85 3 69 211 185 334 2.56e-19 85.9
MS.gene64163.t1 AT3G14720 37.748 151 85 3 69 211 185 334 2.56e-19 85.9
MS.gene64163.t1 AT3G61160 35.000 120 76 1 72 191 261 378 5.84e-19 84.7
MS.gene64163.t1 AT1G18150 36.424 151 87 3 69 211 264 413 7.70e-19 84.7
MS.gene64163.t1 AT1G18150 36.424 151 87 3 69 211 264 413 7.70e-19 84.7
MS.gene64163.t1 AT1G18150 36.424 151 87 3 69 211 264 413 7.70e-19 84.7
MS.gene64163.t1 AT3G05050 36.496 137 84 2 70 204 295 430 5.00e-18 82.4
MS.gene64163.t1 AT3G05050 36.496 137 84 2 70 204 295 430 5.00e-18 82.4
MS.gene64163.t1 AT3G05050 36.496 137 84 2 70 204 295 430 5.00e-18 82.4
MS.gene64163.t1 AT1G07880 31.847 157 82 4 69 209 189 336 5.26e-18 81.6
MS.gene64163.t1 AT3G18040 35.762 151 88 3 69 211 95 244 2.93e-17 80.1
MS.gene64163.t1 AT3G18040 35.762 151 88 3 69 211 183 332 4.18e-17 79.7
MS.gene64163.t1 AT3G18040 35.762 151 88 3 69 211 292 441 4.80e-17 79.7
MS.gene64163.t1 AT3G18040 35.762 151 88 3 69 211 178 327 5.37e-17 79.3
MS.gene64163.t1 AT3G18040 35.762 151 88 3 69 211 292 441 5.77e-17 79.3
MS.gene64163.t1 AT2G42880 36.601 153 84 5 69 211 185 334 1.29e-16 78.6
MS.gene64163.t1 AT2G42880 34.437 151 90 3 69 211 185 334 1.47e-16 78.2
MS.gene64163.t1 AT3G61160 38.824 85 50 1 72 156 261 343 2.39e-16 77.0
MS.gene64163.t1 AT4G18710 50.820 61 30 0 72 132 193 253 2.42e-16 76.3
MS.gene64163.t1 AT3G61160 38.824 85 50 1 72 156 268 350 2.67e-16 77.0
MS.gene64163.t1 AT1G01560 45.902 61 33 0 69 129 196 256 6.64e-14 69.3
MS.gene64163.t1 AT1G01560 45.902 61 33 0 69 129 196 256 6.64e-14 69.3
MS.gene64163.t1 AT2G38620 47.368 57 30 0 71 127 178 234 1.17e-13 68.6
MS.gene64163.t1 AT2G38620 47.368 57 30 0 71 127 178 234 1.17e-13 68.6
MS.gene64163.t1 AT2G23070 32.847 137 77 3 74 199 285 417 1.53e-13 69.3
MS.gene64163.t1 AT1G07880 45.902 61 33 0 69 129 189 249 3.78e-13 67.0
MS.gene64163.t1 AT1G71530 54.902 51 23 0 70 120 304 354 7.36e-13 67.0
MS.gene64163.t1 AT5G67380 29.496 139 83 3 74 201 230 364 7.65e-12 64.3
MS.gene64163.t1 AT5G67380 29.496 139 83 3 74 201 263 397 8.41e-12 64.3
MS.gene64163.t1 AT2G40120 32.143 140 81 4 74 200 426 564 8.81e-12 64.3
MS.gene64163.t1 AT3G17750 29.861 144 87 3 70 200 988 1130 1.12e-11 64.3
MS.gene64163.t1 AT3G50000 29.496 139 83 3 74 201 257 391 2.29e-11 62.8

Find 40 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCATCTTGCAAACATTT+TGG 0.181199 6.2:-87429930 None:intergenic
CTTTATGGGTCAACAAATTA+TGG 0.193721 6.2:+87429687 MS.gene64163:CDS
AGGGCTCCTGAACTACTTTA+TGG 0.236937 6.2:+87429672 MS.gene64163:CDS
GAGGTTGATCTTTGGTCATT+AGG 0.267599 6.2:+87429714 MS.gene64163:CDS
CTTTCTTCATTTGCTTCATA+TGG 0.287657 6.2:-87429597 None:intergenic
TGTTGGAACTAGATGGTTTA+GGG 0.306890 6.2:+87429653 MS.gene64163:CDS
GTGTTGGAACTAGATGGTTT+AGG 0.313304 6.2:+87429652 MS.gene64163:CDS
ACATCAAAGCCTTTGTTTCC+TGG 0.327343 6.2:+87429759 MS.gene64163:CDS
GGAACTCGTAGCTGAGAAAT+AGG 0.342840 6.2:-87430053 None:intergenic
GCTAAGGTGGAAAACCCTAT+TGG 0.344938 6.2:+87429891 MS.gene64163:CDS
GCCGCAGTGGCTCTCCTAGC+TGG 0.345576 6.2:-87429984 None:intergenic
GTTGACCCATAAAGTAGTTC+AGG 0.350444 6.2:-87429678 None:intergenic
CATCATGTGTTGGAACTAGA+TGG 0.354874 6.2:+87429646 MS.gene64163:CDS
GTCAACAAATTATGGTTTAG+AGG 0.358936 6.2:+87429695 MS.gene64163:CDS
GGGCTCCTGAACTACTTTAT+GGG 0.365723 6.2:+87429673 MS.gene64163:CDS
AAAGAAATTCTTGCATAATC+AGG 0.371254 6.2:-87429867 None:intergenic
ATGCATGCTTCAAGACCAAT+AGG 0.378873 6.2:-87429906 None:intergenic
ATGGTTTAGAGGTTGATCTT+TGG 0.394125 6.2:+87429706 MS.gene64163:CDS
AAGCCTTTGTTTCCTGGTAC+AGG 0.425521 6.2:+87429765 MS.gene64163:CDS
CACATATGACACTGATGATA+AGG 0.431871 6.2:+87429488 MS.gene64163:CDS
TTTGCAAGATGAAGTTTCCT+TGG 0.464230 6.2:+87429938 MS.gene64163:CDS
CATATGAAGCAAATGAAGAA+AGG 0.477457 6.2:+87429598 MS.gene64163:CDS
CGTAGCTGAGAAATAGGATC+AGG 0.485534 6.2:-87430047 None:intergenic
ATATGAAGCAAATGAAGAAA+GGG 0.519675 6.2:+87429599 MS.gene64163:CDS
GTAATCTCGATGAGGAAGCT+TGG 0.529739 6.2:+87429826 MS.gene64163:CDS
CGCTAGTTGTGCATGTTGCG+CGG 0.553701 6.2:-87429542 None:intergenic
GCGACGACGATGATGATGCT+TGG 0.557216 6.2:+87429562 MS.gene64163:CDS
TGCTTTGTTATGATCCAGCT+AGG 0.557729 6.2:+87429970 MS.gene64163:CDS
TGCATGCTTCAAGACCAATA+GGG 0.568665 6.2:-87429905 None:intergenic
CTCGATGAGGAAGCTTGGAA+TGG 0.573471 6.2:+87429831 MS.gene64163:CDS
TGATCAATATCACCTGTACC+AGG 0.582493 6.2:-87429777 None:intergenic
GGTTTCCTCACATCATGTGT+TGG 0.585452 6.2:+87429636 MS.gene64163:CDS
TGAGAAATAGGATCAGGAAG+TGG 0.606080 6.2:-87430041 None:intergenic
GTTGTTACCGTCATGCGTGT+TGG 0.606758 6.2:-87429514 None:intergenic
AGCTAGGAGAGCCACTGCGG+CGG 0.621246 6.2:+87429986 MS.gene64163:CDS
TCACCTGTACCAGGAAACAA+AGG 0.636623 6.2:-87429768 None:intergenic
AAGGACACCAACACGCATGA+CGG 0.646451 6.2:+87429507 MS.gene64163:CDS
ATGAAGTAACTCCGCCGCAG+TGG 0.652557 6.2:-87429997 None:intergenic
TAGTTCCAACACATGATGTG+AGG 0.669668 6.2:-87429641 None:intergenic
TCCAGCTAGGAGAGCCACTG+CGG 0.692760 6.2:+87429983 MS.gene64163:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAATTCTTGCATAATC+AGG - chr6.2:87429870-87429889 None:intergenic 25.0%
! ATATGAAGCAAATGAAGAAA+GGG + chr6.2:87429599-87429618 MS.gene64163:CDS 25.0%
!! AGTAGAATCATTAGTGTTTT+CGG + chr6.2:87429804-87429823 MS.gene64163:CDS 25.0%
CATATGAAGCAAATGAAGAA+AGG + chr6.2:87429598-87429617 MS.gene64163:CDS 30.0%
CTTTATGGGTCAACAAATTA+TGG + chr6.2:87429687-87429706 MS.gene64163:CDS 30.0%
CTTTCTTCATTTGCTTCATA+TGG - chr6.2:87429600-87429619 None:intergenic 30.0%
GTCAACAAATTATGGTTTAG+AGG + chr6.2:87429695-87429714 MS.gene64163:CDS 30.0%
! AAGAATTTCTTTTGCTAAGG+TGG + chr6.2:87429878-87429897 MS.gene64163:CDS 30.0%
! ACTTCATCTTGCAAACATTT+TGG - chr6.2:87429933-87429952 None:intergenic 30.0%
! TGCAAGAATTTCTTTTGCTA+AGG + chr6.2:87429875-87429894 MS.gene64163:CDS 30.0%
CACATATGACACTGATGATA+AGG + chr6.2:87429488-87429507 MS.gene64163:CDS 35.0%
GAAAGGGATGAAAAACTAGA+TGG + chr6.2:87429615-87429634 MS.gene64163:CDS 35.0%
TGTTGGAACTAGATGGTTTA+GGG + chr6.2:87429653-87429672 MS.gene64163:CDS 35.0%
TTTGCAAGATGAAGTTTCCT+TGG + chr6.2:87429938-87429957 MS.gene64163:CDS 35.0%
! ACAAAGCAATCTTTTGACCA+AGG - chr6.2:87429958-87429977 None:intergenic 35.0%
! ATGGTTTAGAGGTTGATCTT+TGG + chr6.2:87429706-87429725 MS.gene64163:CDS 35.0%
!!! TCTTGTCCATTTTTGGTTGA+AGG - chr6.2:87430077-87430096 None:intergenic 35.0%
ATGCATGCTTCAAGACCAAT+AGG - chr6.2:87429909-87429928 None:intergenic 40.0%
CATCATGTGTTGGAACTAGA+TGG + chr6.2:87429646-87429665 MS.gene64163:CDS 40.0%
CGAGTTCCTTCAACCAAAAA+TGG + chr6.2:87430068-87430087 MS.gene64163:CDS 40.0%
GTGTTGGAACTAGATGGTTT+AGG + chr6.2:87429652-87429671 MS.gene64163:CDS 40.0%
GTTGACCCATAAAGTAGTTC+AGG - chr6.2:87429681-87429700 None:intergenic 40.0%
TAGTTCCAACACATGATGTG+AGG - chr6.2:87429644-87429663 None:intergenic 40.0%
TGAGAAATAGGATCAGGAAG+TGG - chr6.2:87430044-87430063 None:intergenic 40.0%
TGATCAATATCACCTGTACC+AGG - chr6.2:87429780-87429799 None:intergenic 40.0%
TGCATGCTTCAAGACCAATA+GGG - chr6.2:87429908-87429927 None:intergenic 40.0%
! ACATCAAAGCCTTTGTTTCC+TGG + chr6.2:87429759-87429778 MS.gene64163:CDS 40.0%
! GAGGTTGATCTTTGGTCATT+AGG + chr6.2:87429714-87429733 MS.gene64163:CDS 40.0%
! TGCTTTGTTATGATCCAGCT+AGG + chr6.2:87429970-87429989 MS.gene64163:CDS 40.0%
! TGTTTTCGGTAATCTCGATG+AGG + chr6.2:87429818-87429837 MS.gene64163:CDS 40.0%
AGGGCTCCTGAACTACTTTA+TGG + chr6.2:87429672-87429691 MS.gene64163:CDS 45.0%
CGTAGCTGAGAAATAGGATC+AGG - chr6.2:87430050-87430069 None:intergenic 45.0%
GCTAAGGTGGAAAACCCTAT+TGG + chr6.2:87429891-87429910 MS.gene64163:CDS 45.0%
GGAACTCGTAGCTGAGAAAT+AGG - chr6.2:87430056-87430075 None:intergenic 45.0%
GGGCTCCTGAACTACTTTAT+GGG + chr6.2:87429673-87429692 MS.gene64163:CDS 45.0%
GGTTTCCTCACATCATGTGT+TGG + chr6.2:87429636-87429655 MS.gene64163:CDS 45.0%
GTAATCTCGATGAGGAAGCT+TGG + chr6.2:87429826-87429845 MS.gene64163:CDS 45.0%
TCACCTGTACCAGGAAACAA+AGG - chr6.2:87429771-87429790 None:intergenic 45.0%
! AAGCCTTTGTTTCCTGGTAC+AGG + chr6.2:87429765-87429784 MS.gene64163:CDS 45.0%
AAGGACACCAACACGCATGA+CGG + chr6.2:87429507-87429526 MS.gene64163:CDS 50.0%
CTCGATGAGGAAGCTTGGAA+TGG + chr6.2:87429831-87429850 MS.gene64163:CDS 50.0%
GTTGTTACCGTCATGCGTGT+TGG - chr6.2:87429517-87429536 None:intergenic 50.0%
ATGAAGTAACTCCGCCGCAG+TGG - chr6.2:87430000-87430019 None:intergenic 55.0%
CGCTAGTTGTGCATGTTGCG+CGG - chr6.2:87429545-87429564 None:intergenic 55.0%
! GCGACGACGATGATGATGCT+TGG + chr6.2:87429562-87429581 MS.gene64163:CDS 55.0%
TCCAGCTAGGAGAGCCACTG+CGG + chr6.2:87429983-87430002 MS.gene64163:CDS 60.0%
AGCTAGGAGAGCCACTGCGG+CGG + chr6.2:87429986-87430005 MS.gene64163:CDS 65.0%
GCCGCAGTGGCTCTCCTAGC+TGG - chr6.2:87429987-87430006 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 87429435 87430100 87429435 ID=MS.gene64163
chr6.2 mRNA 87429435 87430100 87429435 ID=MS.gene64163.t1;Parent=MS.gene64163
chr6.2 exon 87429435 87430100 87429435 ID=MS.gene64163.t1.exon1;Parent=MS.gene64163.t1
chr6.2 CDS 87429435 87430100 87429435 ID=cds.MS.gene64163.t1;Parent=MS.gene64163.t1
Gene Sequence

>MS.gene64163

ATGACTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTCAGAGTCACACATATGACACTGATGATAAGGACACCAACACGCATGACGGTAACAACTCGTGCCGCGCAACATGCACAACTAGCGACGACGATGATGATGCTTGGAAGAATTCTTTGCCATATGAAGCAAATGAAGAAAGGGATGAAAAACTAGATGGTTTCCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCTGAACTACTTTATGGGTCAACAAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTCTTTGCTGAGTTGTTAACATCAAAGCCTTTGTTTCCTGGTACAGGTGATATTGATCAGATTAGTAGAATCATTAGTGTTTTCGGTAATCTCGATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGCAAGAATTTCTTTTGCTAAGGTGGAAAACCCTATTGGTCTTGAAGCATGCATGCCAAAATGTTTGCAAGATGAAGTTTCCTTGGTCAAAAGATTGCTTTGTTATGATCCAGCTAGGAGAGCCACTGCGGCGGAGTTACTTCATGATAAGTACTTCACTGAAGAACCACTTCCTGATCCTATTTCTCAGCTACGAGTTCCTTCAACCAAAAATGGACAAGACTAG
Protein sequence

>MS.gene64163.t1

MTHDEYFRVLDELKIQSHTYDTDDKDTNTHDGNNSCRATCTTSDDDDDAWKNSLPYEANEERDEKLDGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTSKPLFPGTGDIDQISRIISVFGNLDEEAWNGCSKLPDYARISFAKVENPIGLEACMPKCLQDEVSLVKRLLCYDPARRATAAELLHDKYFTEEPLPDPISQLRVPSTKNGQD