Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64179.t1 | XP_003612885.1 | 98.2 | 169 | 3 | 0 | 1 | 169 | 69 | 237 | 3.10E-91 | 344.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64179.t1 | G7KDS6 | 98.2 | 169 | 3 | 0 | 1 | 169 | 69 | 237 | 2.2e-91 | 344.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64179.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64179.t1 | MTR_5g030130 | 98.225 | 169 | 3 | 0 | 1 | 169 | 69 | 237 | 1.98e-123 | 347 |
MS.gene64179.t1 | MTR_8g066820 | 84.706 | 170 | 24 | 2 | 1 | 169 | 67 | 235 | 2.61e-92 | 268 |
MS.gene64179.t1 | MTR_4g078170 | 72.393 | 163 | 43 | 1 | 2 | 164 | 50 | 210 | 2.48e-82 | 242 |
MS.gene64179.t1 | MTR_5g007230 | 72.561 | 164 | 36 | 3 | 1 | 164 | 55 | 209 | 2.09e-79 | 234 |
MS.gene64179.t1 | MTR_5g030130 | 97.872 | 94 | 2 | 0 | 1 | 94 | 69 | 162 | 1.40e-65 | 199 |
MS.gene64179.t1 | MTR_1g062160 | 55.128 | 156 | 58 | 3 | 13 | 163 | 54 | 202 | 1.47e-52 | 166 |
MS.gene64179.t1 | MTR_7g102790 | 55.621 | 169 | 59 | 4 | 2 | 163 | 44 | 203 | 2.08e-50 | 161 |
MS.gene64179.t1 | MTR_2g060540 | 52.000 | 100 | 39 | 3 | 2 | 92 | 46 | 145 | 4.74e-29 | 104 |
MS.gene64179.t1 | MTR_2g060500 | 49.020 | 102 | 43 | 2 | 2 | 94 | 46 | 147 | 8.93e-29 | 104 |
MS.gene64179.t1 | MTR_2g084495 | 33.158 | 190 | 98 | 4 | 2 | 162 | 40 | 229 | 3.13e-27 | 102 |
MS.gene64179.t1 | MTR_2g055210 | 33.168 | 202 | 90 | 4 | 5 | 162 | 139 | 339 | 5.25e-26 | 101 |
MS.gene64179.t1 | MTR_4g116300 | 46.392 | 97 | 52 | 0 | 5 | 101 | 43 | 139 | 4.22e-25 | 97.4 |
MS.gene64179.t1 | MTR_4g094680 | 34.831 | 178 | 96 | 4 | 5 | 162 | 59 | 236 | 5.76e-25 | 96.7 |
MS.gene64179.t1 | MTR_2g084525 | 48.113 | 106 | 46 | 3 | 3 | 99 | 41 | 146 | 1.12e-24 | 96.3 |
MS.gene64179.t1 | MTR_2g084510 | 32.020 | 203 | 94 | 4 | 3 | 162 | 40 | 241 | 3.09e-24 | 95.1 |
MS.gene64179.t1 | MTR_2g036170 | 29.897 | 194 | 84 | 6 | 5 | 162 | 74 | 251 | 6.41e-18 | 78.6 |
MS.gene64179.t1 | MTR_8g097310 | 31.677 | 161 | 95 | 6 | 6 | 162 | 4 | 153 | 4.73e-16 | 71.6 |
MS.gene64179.t1 | MTR_8g105930 | 38.182 | 110 | 47 | 3 | 5 | 93 | 49 | 158 | 9.49e-14 | 67.0 |
MS.gene64179.t1 | MTR_1g032880 | 31.746 | 126 | 76 | 5 | 13 | 129 | 27 | 151 | 4.23e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64179.t1 | AT1G32700 | 72.941 | 170 | 41 | 2 | 2 | 169 | 8 | 174 | 2.66e-78 | 231 |
MS.gene64179.t1 | AT1G32700 | 72.941 | 170 | 41 | 2 | 2 | 169 | 47 | 213 | 7.27e-78 | 231 |
MS.gene64179.t1 | AT4G17900 | 70.732 | 164 | 41 | 3 | 2 | 163 | 55 | 213 | 1.61e-77 | 230 |
MS.gene64179.t1 | AT4G17900 | 70.732 | 164 | 41 | 3 | 2 | 163 | 69 | 227 | 1.74e-77 | 230 |
MS.gene64179.t1 | AT1G21000 | 48.718 | 195 | 61 | 4 | 5 | 162 | 51 | 243 | 5.25e-55 | 174 |
MS.gene64179.t1 | AT1G21000 | 48.718 | 195 | 61 | 4 | 5 | 162 | 54 | 246 | 6.19e-55 | 174 |
MS.gene64179.t1 | AT1G76590 | 47.396 | 192 | 65 | 2 | 5 | 162 | 56 | 245 | 1.39e-52 | 167 |
MS.gene64179.t1 | AT5G46710 | 51.807 | 166 | 72 | 4 | 2 | 162 | 47 | 209 | 2.47e-51 | 163 |
MS.gene64179.t1 | AT5G46710 | 51.807 | 166 | 72 | 4 | 2 | 162 | 63 | 225 | 4.33e-51 | 163 |
MS.gene64179.t1 | AT1G43000 | 47.059 | 170 | 78 | 2 | 5 | 162 | 54 | 223 | 1.12e-46 | 152 |
MS.gene64179.t1 | AT1G43000 | 47.059 | 170 | 78 | 2 | 5 | 162 | 47 | 216 | 1.20e-46 | 152 |
MS.gene64179.t1 | AT5G46710 | 63.441 | 93 | 33 | 1 | 2 | 93 | 63 | 155 | 3.76e-39 | 131 |
MS.gene64179.t1 | AT2G27930 | 45.665 | 173 | 62 | 5 | 2 | 164 | 39 | 189 | 7.22e-39 | 131 |
MS.gene64179.t1 | AT2G27930 | 45.665 | 173 | 62 | 5 | 2 | 164 | 39 | 189 | 7.22e-39 | 131 |
MS.gene64179.t1 | AT2G27930 | 47.403 | 154 | 50 | 4 | 20 | 164 | 61 | 192 | 2.59e-35 | 122 |
MS.gene64179.t1 | AT2G27930 | 47.403 | 154 | 50 | 4 | 20 | 164 | 61 | 192 | 2.59e-35 | 122 |
MS.gene64179.t1 | AT2G27930 | 57.843 | 102 | 33 | 2 | 2 | 93 | 39 | 140 | 2.08e-34 | 119 |
MS.gene64179.t1 | AT2G27930 | 57.843 | 102 | 33 | 2 | 2 | 93 | 39 | 140 | 2.08e-34 | 119 |
MS.gene64179.t1 | AT2G12646 | 47.423 | 97 | 51 | 0 | 5 | 101 | 40 | 136 | 5.02e-26 | 99.8 |
MS.gene64179.t1 | AT2G12646 | 47.423 | 97 | 51 | 0 | 5 | 101 | 43 | 139 | 5.99e-26 | 99.8 |
MS.gene64179.t1 | AT2G12646 | 47.423 | 97 | 51 | 0 | 5 | 101 | 43 | 139 | 5.99e-26 | 99.8 |
MS.gene64179.t1 | AT1G31040 | 33.511 | 188 | 94 | 3 | 5 | 162 | 56 | 242 | 1.02e-25 | 99.0 |
MS.gene64179.t1 | AT3G60670 | 48.315 | 89 | 46 | 0 | 5 | 93 | 44 | 132 | 2.42e-23 | 92.8 |
MS.gene64179.t1 | AT2G01818 | 34.132 | 167 | 88 | 7 | 13 | 162 | 60 | 221 | 7.09e-14 | 67.0 |
MS.gene64179.t1 | AT2G01818 | 33.766 | 154 | 80 | 7 | 26 | 162 | 9 | 157 | 7.20e-12 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTATTCCCTTTCTTCTCT+TGG | 0.322835 | 5.2:+18922546 | None:intergenic |
TCCTTCCGGTTCTGTTCTCT+TGG | 0.350274 | 5.2:-18923224 | MS.gene64179:CDS |
CAAAGACCACCGTTACATTC+AGG | 0.356801 | 5.2:-18923740 | MS.gene64179:intron |
TTCTGTAATTAACTGAAGTT+GGG | 0.357223 | 5.2:+18922572 | None:intergenic |
GTAGCCTTCTTGATTCCTTC+CGG | 0.377067 | 5.2:-18923238 | MS.gene64179:CDS |
CAGAAACACTTGGACATTGC+TGG | 0.382483 | 5.2:-18923365 | MS.gene64179:CDS |
GTTCTGTAATTAACTGAAGT+TGG | 0.401937 | 5.2:+18922571 | None:intergenic |
CTTCATACCATGATGTGATA+AGG | 0.416229 | 5.2:-18923400 | MS.gene64179:CDS |
CCTTGCACTGTTGATAATGT+AGG | 0.430360 | 5.2:+18923334 | None:intergenic |
TATTGTTTGGATTGTATGAA+TGG | 0.430470 | 5.2:-18923793 | None:intergenic |
CTAAGAACTTCCAGAAGAAA+AGG | 0.442353 | 5.2:-18922705 | MS.gene64179:CDS |
ATACCACATAGAGCCCCATT+GGG | 0.447453 | 5.2:-18922529 | MS.gene64179:CDS |
TTCATACCATGATGTGATAA+GGG | 0.458976 | 5.2:-18923399 | MS.gene64179:CDS |
GTTCTGTTCTCTTGGTTGCA+AGG | 0.482122 | 5.2:-18923216 | MS.gene64179:intron |
TGCAACCAAGAGAACAGAAC+CGG | 0.486127 | 5.2:+18923219 | None:intergenic |
AGAACAGCCAAGAGAAGAAA+GGG | 0.492152 | 5.2:-18922553 | MS.gene64179:CDS |
CAGAACAGCCAAGAGAAGAA+AGG | 0.499241 | 5.2:-18922554 | MS.gene64179:CDS |
GAATGTAACGGTGGTCTTTG+TGG | 0.500381 | 5.2:+18923743 | None:intergenic |
CCTCAACCAAGGCCAGGAAA+AGG | 0.529589 | 5.2:-18923290 | MS.gene64179:CDS |
AATACCACATAGAGCCCCAT+TGG | 0.536612 | 5.2:-18922530 | MS.gene64179:CDS |
GGGTTGTGTTCTTGAATGAA+AGG | 0.538393 | 5.2:-18923313 | MS.gene64179:CDS |
CATTCACCCTTATCACATCA+TGG | 0.546598 | 5.2:+18923393 | None:intergenic |
TATGGTTTGAACAGATTAGG+AGG | 0.550366 | 5.2:-18923424 | MS.gene64179:intron |
GAATGTGAATTGCAGATTGT+GGG | 0.552420 | 5.2:-18922733 | MS.gene64179:intron |
GAAAGGCCTCAACCAAGGCC+AGG | 0.557056 | 5.2:-18923296 | MS.gene64179:CDS |
CCTACATTATCAACAGTGCA+AGG | 0.564703 | 5.2:-18923334 | MS.gene64179:CDS |
AAGGAGACAATTAACAGCAA+TGG | 0.585369 | 5.2:-18922686 | MS.gene64179:CDS |
AGCAATGGCATCAGATTCTG+AGG | 0.610535 | 5.2:-18922671 | MS.gene64179:CDS |
GAATGAGATTCAGAAACACT+TGG | 0.628209 | 5.2:-18923375 | MS.gene64179:CDS |
GAAGACAAACCTGAATGTAA+CGG | 0.653422 | 5.2:+18923731 | None:intergenic |
TGAATGAAAGGCCTCAACCA+AGG | 0.654295 | 5.2:-18923301 | MS.gene64179:CDS |
AGAACCGGAAGGAATCAAGA+AGG | 0.656588 | 5.2:+18923234 | None:intergenic |
CTACATTATCAACAGTGCAA+GGG | 0.657965 | 5.2:-18923333 | MS.gene64179:CDS |
ACCACATAGAGCCCCATTGG+GGG | 0.661326 | 5.2:-18922527 | MS.gene64179:CDS |
TACCACATAGAGCCCCATTG+GGG | 0.680294 | 5.2:-18922528 | MS.gene64179:CDS |
CCACATAGAGCCCCATTGGG+GGG | 0.682285 | 5.2:-18922526 | MS.gene64179:CDS |
ACCAAGAGAACAGAACCGGA+AGG | 0.684862 | 5.2:+18923223 | None:intergenic |
TCTGTAATTAACTGAAGTTG+GGG | 0.688523 | 5.2:+18922573 | None:intergenic |
AATGTGAATTGCAGATTGTG+GGG | 0.690938 | 5.2:-18922732 | MS.gene64179:intron |
GACAAACCTGAATGTAACGG+TGG | 0.716496 | 5.2:+18923734 | None:intergenic |
GCAAGACAGAGAGAACAGAG+AGG | 0.742658 | 5.2:+18923769 | None:intergenic |
CTGTAATTAACTGAAGTTGG+GGG | 0.746847 | 5.2:+18922574 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACACATAATAGTTATGATT+TGG | + | chr5.2:18923504-18923523 | None:intergenic | 20.0% |
!! | AATAATTGATGAGAATACAT+TGG | + | chr5.2:18923123-18923142 | None:intergenic | 20.0% |
!!! | CTAAAGTTTGTTTTTTTGTA+TGG | - | chr5.2:18922843-18922862 | MS.gene64179:intron | 20.0% |
!!! | CTAGTAAAGAAACTTTTTAT+GGG | - | chr5.2:18923328-18923347 | MS.gene64179:CDS | 20.0% |
! | AATTAGACATTAGACATCAA+TGG | + | chr5.2:18922817-18922836 | None:intergenic | 25.0% |
! | TGTGCAAAAGATTAAATTGA+AGG | + | chr5.2:18923420-18923439 | None:intergenic | 25.0% |
! | TTCTGTAATTAACTGAAGTT+GGG | + | chr5.2:18923716-18923735 | None:intergenic | 25.0% |
!! | ATCTAAGTGTTATTCTGAAA+TGG | - | chr5.2:18922723-18922742 | MS.gene64179:intron | 25.0% |
!! | CTTATAATCTGACACATTTT+TGG | - | chr5.2:18922622-18922641 | MS.gene64179:CDS | 25.0% |
!! | GCTAGTAAAGAAACTTTTTA+TGG | - | chr5.2:18923327-18923346 | MS.gene64179:CDS | 25.0% |
!! | TATAGATTCGTTCTTTTTCT+GGG | - | chr5.2:18922658-18922677 | MS.gene64179:CDS | 25.0% |
!! | TTATAGATTCGTTCTTTTTC+TGG | - | chr5.2:18922657-18922676 | MS.gene64179:CDS | 25.0% |
!!! | TCTAAGTGTTATTCTGAAAT+GGG | - | chr5.2:18922724-18922743 | MS.gene64179:intron | 25.0% |
AAGTCAATATTCAAATCCCA+TGG | + | chr5.2:18923466-18923485 | None:intergenic | 30.0% | |
AATAGCTGAAAATCAGCAAA+AGG | + | chr5.2:18922767-18922786 | None:intergenic | 30.0% | |
AATTGATGAGAATACATTGG+TGG | + | chr5.2:18923120-18923139 | None:intergenic | 30.0% | |
GTTCTGTAATTAACTGAAGT+TGG | + | chr5.2:18923717-18923736 | None:intergenic | 30.0% | |
TCTGTAATTAACTGAAGTTG+GGG | + | chr5.2:18923715-18923734 | None:intergenic | 30.0% | |
TTCATACCATGATGTGATAA+GGG | - | chr5.2:18922886-18922905 | MS.gene64179:intron | 30.0% | |
TTGTATGGTTTGAACAGATT+AGG | - | chr5.2:18922858-18922877 | MS.gene64179:intron | 30.0% | |
! | ACTATAACAATGTTTTGTGG+CGG | - | chr5.2:18923218-18923237 | MS.gene64179:CDS | 30.0% |
! | AGTTATGATTTGGACAAAGA+TGG | + | chr5.2:18923494-18923513 | None:intergenic | 30.0% |
! | TCAAAGCATTAAACAACCAT+GGG | - | chr5.2:18923447-18923466 | MS.gene64179:intron | 30.0% |
! | TGCACTATAACAATGTTTTG+TGG | - | chr5.2:18923215-18923234 | MS.gene64179:intron | 30.0% |
! | TTAATTGTCTCCTTTTCTTC+TGG | + | chr5.2:18923593-18923612 | None:intergenic | 30.0% |
! | TTCAAAGCATTAAACAACCA+TGG | - | chr5.2:18923446-18923465 | MS.gene64179:intron | 30.0% |
!! | GAACTTTGATTTTCTTCTGA+CGG | + | chr5.2:18923668-18923687 | None:intergenic | 30.0% |
!!! | GAGGTTGACTTTTTCATAAT+GGG | - | chr5.2:18923366-18923385 | MS.gene64179:CDS | 30.0% |
!!! | TGAGGTTGACTTTTTCATAA+TGG | - | chr5.2:18923365-18923384 | MS.gene64179:CDS | 30.0% |
AAGGAGACAATTAACAGCAA+TGG | - | chr5.2:18923599-18923618 | MS.gene64179:intron | 35.0% | |
AATGTGAATTGCAGATTGTG+GGG | - | chr5.2:18923553-18923572 | MS.gene64179:intron | 35.0% | |
CTAAGAACTTCCAGAAGAAA+AGG | - | chr5.2:18923580-18923599 | MS.gene64179:intron | 35.0% | |
CTACATTATCAACAGTGCAA+GGG | - | chr5.2:18922952-18922971 | MS.gene64179:intron | 35.0% | |
CTGAACAAATCGCTATTGTT+CGG | - | chr5.2:18923155-18923174 | MS.gene64179:intron | 35.0% | |
CTGTAATTAACTGAAGTTGG+GGG | + | chr5.2:18923714-18923733 | None:intergenic | 35.0% | |
CTTCATACCATGATGTGATA+AGG | - | chr5.2:18922885-18922904 | MS.gene64179:intron | 35.0% | |
GAAGACAAACCTGAATGTAA+CGG | + | chr5.2:18922557-18922576 | None:intergenic | 35.0% | |
GAATGAGATTCAGAAACACT+TGG | - | chr5.2:18922910-18922929 | MS.gene64179:intron | 35.0% | |
GAATGTGAATTGCAGATTGT+GGG | - | chr5.2:18923552-18923571 | MS.gene64179:intron | 35.0% | |
TATGGTTTGAACAGATTAGG+AGG | - | chr5.2:18922861-18922880 | MS.gene64179:intron | 35.0% | |
TGAATGTGAATTGCAGATTG+TGG | - | chr5.2:18923551-18923570 | MS.gene64179:intron | 35.0% | |
TGGGTTAAAATGAGTTGTTG+AGG | - | chr5.2:18923347-18923366 | MS.gene64179:CDS | 35.0% | |
!!! | CTGACACATTTTTGGTTCAT+GGG | - | chr5.2:18922630-18922649 | MS.gene64179:CDS | 35.0% |
!!! | TCTGACACATTTTTGGTTCA+TGG | - | chr5.2:18922629-18922648 | MS.gene64179:CDS | 35.0% |
AGAACAGCCAAGAGAAGAAA+GGG | - | chr5.2:18923732-18923751 | MS.gene64179:intron | 40.0% | |
CAAGAGTCTCGTGAATCAAA+TGG | + | chr5.2:18923394-18923413 | None:intergenic | 40.0% | |
CATTCACCCTTATCACATCA+TGG | + | chr5.2:18922895-18922914 | None:intergenic | 40.0% | |
CCTACATTATCAACAGTGCA+AGG | - | chr5.2:18922951-18922970 | MS.gene64179:intron | 40.0% | |
CTCAGCACAGAAAACAAAAG+TGG | + | chr5.2:18922703-18922722 | None:intergenic | 40.0% | |
GCTATAACAATGTTGTGTGG+CGG | + | chr5.2:18923261-18923280 | None:intergenic | 40.0% | |
GGGTTGTGTTCTTGAATGAA+AGG | - | chr5.2:18922972-18922991 | MS.gene64179:intron | 40.0% | |
TAATTAACTGAAGTTGGGGG+TGG | + | chr5.2:18923711-18923730 | None:intergenic | 40.0% | |
TGCGCTATAACAATGTTGTG+TGG | + | chr5.2:18923264-18923283 | None:intergenic | 40.0% | |
TGGTATTCCCTTTCTTCTCT+TGG | + | chr5.2:18923742-18923761 | None:intergenic | 40.0% | |
!! | CCTTGCACTGTTGATAATGT+AGG | + | chr5.2:18922954-18922973 | None:intergenic | 40.0% |
AATACCACATAGAGCCCCAT+TGG | - | chr5.2:18923755-18923774 | MS.gene64179:CDS | 45.0% | |
AGAACCGGAAGGAATCAAGA+AGG | + | chr5.2:18923054-18923073 | None:intergenic | 45.0% | |
AGCAATGGCATCAGATTCTG+AGG | - | chr5.2:18923614-18923633 | MS.gene64179:intron | 45.0% | |
ATACCACATAGAGCCCCATT+GGG | - | chr5.2:18923756-18923775 | MS.gene64179:CDS | 45.0% | |
CAAAGACCACCGTTACATTC+AGG | - | chr5.2:18922545-18922564 | MS.gene64179:CDS | 45.0% | |
CAGAAACACTTGGACATTGC+TGG | - | chr5.2:18922920-18922939 | MS.gene64179:intron | 45.0% | |
CAGAACAGCCAAGAGAAGAA+AGG | - | chr5.2:18923731-18923750 | MS.gene64179:intron | 45.0% | |
CGCAGCTATAGTGAGAACAT+TGG | - | chr5.2:18923280-18923299 | MS.gene64179:CDS | 45.0% | |
GAATGTAACGGTGGTCTTTG+TGG | + | chr5.2:18922545-18922564 | None:intergenic | 45.0% | |
GACAAACCTGAATGTAACGG+TGG | + | chr5.2:18922554-18922573 | None:intergenic | 45.0% | |
GTAGCCTTCTTGATTCCTTC+CGG | - | chr5.2:18923047-18923066 | MS.gene64179:intron | 45.0% | |
GTTCTGTTCTCTTGGTTGCA+AGG | - | chr5.2:18923069-18923088 | MS.gene64179:intron | 45.0% | |
TGAATGAAAGGCCTCAACCA+AGG | - | chr5.2:18922984-18923003 | MS.gene64179:intron | 45.0% | |
TGCAACCAAGAGAACAGAAC+CGG | + | chr5.2:18923069-18923088 | None:intergenic | 45.0% | |
! | GTGTTTGTGACACCTTTTCC+TGG | + | chr5.2:18923010-18923029 | None:intergenic | 45.0% |
ACCAAGAGAACAGAACCGGA+AGG | + | chr5.2:18923065-18923084 | None:intergenic | 50.0% | |
CTAGATCAAGTCCCCCCAAT+GGG | + | chr5.2:18923773-18923792 | None:intergenic | 50.0% | |
GCAAGACAGAGAGAACAGAG+AGG | + | chr5.2:18922519-18922538 | None:intergenic | 50.0% | |
TACCACATAGAGCCCCATTG+GGG | - | chr5.2:18923757-18923776 | MS.gene64179:CDS | 50.0% | |
TAGATCAAGTCCCCCCAATG+GGG | + | chr5.2:18923772-18923791 | None:intergenic | 50.0% | |
TCCTTCCGGTTCTGTTCTCT+TGG | - | chr5.2:18923061-18923080 | MS.gene64179:intron | 50.0% | |
TCTAGATCAAGTCCCCCCAA+TGG | + | chr5.2:18923774-18923793 | None:intergenic | 50.0% | |
ACCACATAGAGCCCCATTGG+GGG | - | chr5.2:18923758-18923777 | MS.gene64179:CDS | 55.0% | |
CCTCAACCAAGGCCAGGAAA+AGG | - | chr5.2:18922995-18923014 | MS.gene64179:intron | 55.0% | |
GAAGTTGGGGGTGGTGTAGA+TGG | + | chr5.2:18923702-18923721 | None:intergenic | 55.0% | |
! | GTGACACCTTTTCCTGGCCT+TGG | + | chr5.2:18923004-18923023 | None:intergenic | 55.0% |
!!! | CCTTTTCCTGGCCTTGGTTG+AGG | + | chr5.2:18922998-18923017 | None:intergenic | 55.0% |
CCACATAGAGCCCCATTGGG+GGG | - | chr5.2:18923759-18923778 | MS.gene64179:CDS | 60.0% | |
GAAAGGCCTCAACCAAGGCC+AGG | - | chr5.2:18922989-18923008 | MS.gene64179:intron | 60.0% | |
CCCCCCAATGGGGCTCTATG+TGG | + | chr5.2:18923762-18923781 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 18922507 | 18923800 | 18922507 | ID=MS.gene64179 |
chr5.2 | mRNA | 18922507 | 18923800 | 18922507 | ID=MS.gene64179.t1;Parent=MS.gene64179 |
chr5.2 | exon | 18923741 | 18923800 | 18923741 | ID=MS.gene64179.t1.exon1;Parent=MS.gene64179.t1 |
chr5.2 | CDS | 18923741 | 18923800 | 18923741 | ID=cds.MS.gene64179.t1;Parent=MS.gene64179.t1 |
chr5.2 | exon | 18923217 | 18923432 | 18923217 | ID=MS.gene64179.t1.exon2;Parent=MS.gene64179.t1 |
chr5.2 | CDS | 18923217 | 18923432 | 18923217 | ID=cds.MS.gene64179.t1;Parent=MS.gene64179.t1 |
chr5.2 | exon | 18922507 | 18922740 | 18922507 | ID=MS.gene64179.t1.exon3;Parent=MS.gene64179.t1 |
chr5.2 | CDS | 18922507 | 18922740 | 18922507 | ID=cds.MS.gene64179.t1;Parent=MS.gene64179.t1 |
Gene Sequence |
Protein sequence |