AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64197

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64197.t1 MTR_1g024025 93.694 111 6 1 83 193 330 439 1.72e-66 221
MS.gene64197.t1 MTR_1g024025 92.857 56 4 0 19 74 204 259 1.02e-26 107
MS.gene64197.t1 MTR_3g064050 71.429 56 16 0 19 74 188 243 1.01e-18 84.0
MS.gene64197.t1 MTR_3g064050 52.857 70 32 1 83 151 314 383 9.49e-17 78.2
MS.gene64197.t1 MTR_5g076270 54.286 70 31 1 83 151 312 381 3.99e-18 82.0
MS.gene64197.t1 MTR_5g076270 69.643 56 17 0 19 74 186 241 6.70e-18 81.6
MS.gene64197.t1 MTR_2g018690 59.740 77 25 2 2 74 166 240 4.95e-18 82.0
MS.gene64197.t1 MTR_2g018690 51.429 70 33 1 83 151 311 380 2.72e-16 76.6
MS.gene64197.t1 MTR_4g124900 74.510 51 13 0 19 69 184 234 6.47e-18 81.6
MS.gene64197.t1 MTR_4g124900 60.417 48 19 0 83 130 309 356 1.14e-15 75.1
MS.gene64197.t1 MTR_4g124900 74.510 51 13 0 19 69 184 234 6.94e-18 81.6
MS.gene64197.t1 MTR_4g124900 60.417 48 19 0 83 130 309 356 1.08e-15 75.1
MS.gene64197.t1 MTR_8g101360 77.551 49 11 0 19 67 193 241 1.24e-17 80.9
MS.gene64197.t1 MTR_8g101360 58.333 48 20 0 83 130 319 366 2.04e-15 74.3
MS.gene64197.t1 MTR_2g005240 57.143 63 27 0 19 81 183 245 2.33e-17 79.7
MS.gene64197.t1 MTR_8g100050 51.190 84 35 2 2 81 201 282 3.71e-17 79.3
MS.gene64197.t1 MTR_8g079492 67.857 56 18 0 19 74 102 157 4.28e-17 79.0
MS.gene64197.t1 MTR_8g079492 54.545 66 29 1 83 147 228 293 4.57e-17 79.0
MS.gene64197.t1 MTR_8g100050 51.190 84 35 2 2 81 201 282 4.32e-17 79.0
MS.gene64197.t1 MTR_8g079492 67.857 56 18 0 19 74 184 239 4.43e-17 79.0
MS.gene64197.t1 MTR_8g079492 52.857 70 32 1 83 151 310 379 5.37e-17 79.0
MS.gene64197.t1 MTR_8g079492 67.857 56 18 0 19 74 184 239 4.47e-17 79.0
MS.gene64197.t1 MTR_8g079492 52.857 70 32 1 83 151 310 379 5.37e-17 79.0
MS.gene64197.t1 MTR_2g043250 70.588 51 15 0 19 69 184 234 7.22e-17 78.6
MS.gene64197.t1 MTR_2g043250 62.500 48 18 0 83 130 309 356 8.49e-16 75.5
MS.gene64197.t1 MTR_3g064050 52.857 70 32 1 83 151 77 146 9.72e-17 78.2
MS.gene64197.t1 MTR_5g032260 43.750 112 45 3 39 150 78 171 2.65e-16 76.6
MS.gene64197.t1 MTR_8g027440 62.500 56 21 0 19 74 189 244 3.32e-16 76.6
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 226 281 4.06e-14 70.5
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 355 403 8.67e-11 60.8
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 226 281 4.07e-14 70.5
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 355 403 9.63e-11 60.5
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 239 294 4.16e-14 70.5
MS.gene64197.t1 MTR_5g074840 52.113 71 33 1 5 75 41 110 4.33e-14 67.4
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 239 294 4.44e-14 70.5
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 368 416 9.12e-11 60.8
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 109 164 4.51e-14 70.5
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 238 286 9.08e-11 60.8
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 96 151 4.60e-14 70.1
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 225 273 8.36e-11 60.8
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 96 151 4.66e-14 70.1
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 225 273 8.87e-11 60.8
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 226 281 4.72e-14 70.1
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 355 403 9.95e-11 60.5
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 109 164 4.85e-14 70.1
MS.gene64197.t1 MTR_2g093740 51.020 49 24 0 86 134 238 286 9.32e-11 60.5
MS.gene64197.t1 MTR_2g093740 55.357 56 25 0 19 74 239 294 4.92e-14 70.1
MS.gene64197.t1 MTR_7g062540 33.140 172 55 8 19 130 174 345 7.09e-14 69.7
MS.gene64197.t1 MTR_4g060460 55.357 56 25 0 19 74 224 279 1.03e-13 69.3
MS.gene64197.t1 MTR_4g060460 55.357 56 25 0 19 74 224 279 1.18e-13 69.3
MS.gene64197.t1 MTR_4g021580 29.091 220 84 8 19 178 179 386 1.27e-13 68.9
MS.gene64197.t1 MTR_4g021580 29.091 220 84 8 19 178 179 386 1.35e-13 68.9
MS.gene64197.t1 MTR_2g014770 50.769 65 31 1 83 146 341 405 2.88e-12 65.1
MS.gene64197.t1 MTR_2g014770 61.364 44 17 0 19 62 216 259 3.69e-11 61.6
MS.gene64197.t1 MTR_2g014770 50.769 65 31 1 83 146 341 405 3.09e-12 65.1
MS.gene64197.t1 MTR_2g014770 61.364 44 17 0 19 62 216 259 3.38e-11 62.0
MS.gene64197.t1 MTR_7g101280 59.574 47 19 0 19 65 189 235 1.23e-11 63.2
MS.gene64197.t1 MTR_0041s0110 59.574 47 19 0 19 65 189 235 1.23e-11 63.2
MS.gene64197.t1 MTR_1g094960 51.667 60 27 1 5 64 164 221 2.95e-11 62.0
MS.gene64197.t1 MTR_4g088210 61.364 44 17 0 19 62 206 249 3.70e-11 62.0
MS.gene64197.t1 MTR_4g088210 50.769 65 30 2 83 146 331 394 4.31e-11 61.6
MS.gene64197.t1 MTR_4g088210 61.364 44 17 0 19 62 206 249 3.86e-11 61.6
MS.gene64197.t1 MTR_4g088210 50.769 65 30 2 83 146 331 394 4.71e-11 61.6
MS.gene64197.t1 MTR_2g094570 60.870 46 18 0 19 64 166 211 5.00e-11 61.2
MS.gene64197.t1 MTR_2g094570 60.870 46 18 0 19 64 166 211 5.11e-11 61.2
MS.gene64197.t1 MTR_2g094570 60.870 46 18 0 19 64 222 267 5.34e-11 61.2
MS.gene64197.t1 MTR_7g101275 59.574 47 19 0 19 65 150 196 9.15e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64197.t1 AT1G19850 50.617 243 56 5 19 197 205 447 5.74e-65 215
MS.gene64197.t1 AT1G19850 50.617 243 56 5 19 197 216 458 5.97e-65 215
MS.gene64197.t1 AT2G46530 36.264 182 54 5 19 139 95 275 6.90e-26 103
MS.gene64197.t1 AT2G46530 36.264 182 54 5 19 139 203 383 1.05e-25 103
MS.gene64197.t1 AT2G46530 36.264 182 54 5 19 139 182 362 1.05e-25 103
MS.gene64197.t1 AT5G62000 34.536 194 60 4 2 130 203 394 1.69e-25 103
MS.gene64197.t1 AT5G62000 34.536 194 60 4 2 130 203 394 1.69e-25 103
MS.gene64197.t1 AT5G62000 34.536 194 60 4 2 130 203 394 1.69e-25 103
MS.gene64197.t1 AT5G62000 34.536 194 60 4 2 130 203 394 1.69e-25 103
MS.gene64197.t1 AT5G62000 34.536 194 60 4 2 130 203 394 2.14e-25 103
MS.gene64197.t1 AT3G61830 36.842 171 48 4 19 130 135 304 2.64e-25 102
MS.gene64197.t1 AT3G61830 36.842 171 48 4 19 130 186 355 3.65e-25 102
MS.gene64197.t1 AT5G60450 34.659 176 55 2 19 134 211 386 7.29e-24 98.6
MS.gene64197.t1 AT5G60450 34.659 176 55 2 19 134 235 410 8.00e-24 98.6
MS.gene64197.t1 AT2G33860 35.028 177 54 3 19 134 60 236 3.29e-23 96.3
MS.gene64197.t1 AT2G33860 35.028 177 54 3 19 134 217 393 4.87e-23 96.3
MS.gene64197.t1 AT1G35540 30.978 184 65 4 5 129 172 352 3.64e-19 85.1
MS.gene64197.t1 AT1G19220 76.471 51 12 0 19 69 184 234 1.06e-18 84.0
MS.gene64197.t1 AT1G19220 52.000 75 35 1 83 156 309 383 2.55e-18 82.8
MS.gene64197.t1 AT1G30330 59.740 77 25 2 2 74 166 240 2.02e-18 83.2
MS.gene64197.t1 AT1G30330 45.055 91 43 3 83 166 311 401 3.89e-16 76.3
MS.gene64197.t1 AT1G30330 59.740 77 25 2 2 74 168 242 2.08e-18 83.2
MS.gene64197.t1 AT1G30330 45.055 91 43 3 83 166 313 403 4.00e-16 76.3
MS.gene64197.t1 AT1G30330 59.740 77 25 2 2 74 168 242 2.08e-18 83.2
MS.gene64197.t1 AT1G30330 45.055 91 43 3 83 166 313 403 4.00e-16 76.3
MS.gene64197.t1 AT5G37020 54.286 70 31 1 83 151 215 284 3.04e-18 82.4
MS.gene64197.t1 AT5G37020 67.857 56 18 0 19 74 89 144 9.14e-18 81.3
MS.gene64197.t1 AT5G37020 54.286 70 31 1 83 151 310 379 3.15e-18 82.4
MS.gene64197.t1 AT5G37020 67.857 56 18 0 19 74 184 239 9.11e-18 81.3
MS.gene64197.t1 AT5G37020 54.286 70 31 1 83 151 310 379 3.67e-18 82.4
MS.gene64197.t1 AT5G37020 67.857 56 18 0 19 74 184 239 9.47e-18 81.3
MS.gene64197.t1 AT1G59750 60.656 61 24 0 19 79 182 242 5.90e-18 81.6
MS.gene64197.t1 AT1G59750 60.656 61 24 0 19 79 182 242 5.90e-18 81.6
MS.gene64197.t1 AT1G59750 60.656 61 24 0 19 79 182 242 6.30e-18 81.6
MS.gene64197.t1 AT1G59750 60.656 61 24 0 19 79 182 242 6.35e-18 81.6
MS.gene64197.t1 AT5G20730 74.510 51 13 0 19 69 185 235 1.81e-17 80.5
MS.gene64197.t1 AT5G20730 64.583 48 17 0 83 130 311 358 1.70e-16 77.4
MS.gene64197.t1 AT5G20730 74.510 51 13 0 19 69 185 235 1.97e-17 80.1
MS.gene64197.t1 AT5G20730 64.583 48 17 0 83 130 310 357 1.75e-16 77.4
MS.gene64197.t1 AT5G20730 74.510 51 13 0 19 69 185 235 2.01e-17 80.1
MS.gene64197.t1 AT5G20730 64.583 48 17 0 83 130 311 358 1.80e-16 77.4
MS.gene64197.t1 AT1G34310 56.897 58 25 0 19 76 184 241 3.63e-15 73.6
MS.gene64197.t1 AT1G35520 48.611 72 33 1 19 90 184 251 3.25e-14 70.9
MS.gene64197.t1 AT4G23980 68.750 48 15 0 19 66 174 221 5.39e-14 70.1
MS.gene64197.t1 AT4G23980 68.750 48 15 0 19 66 174 221 5.65e-14 70.1
MS.gene64197.t1 AT1G34410 47.222 72 34 1 19 90 184 251 9.88e-14 69.3
MS.gene64197.t1 AT1G35240 47.222 72 34 1 19 90 184 251 2.64e-13 68.2
MS.gene64197.t1 AT1G34390 58.333 48 20 0 19 66 182 229 8.59e-12 63.5
MS.gene64197.t1 AT2G28350 60.870 46 18 0 19 64 173 218 6.15e-11 61.2
MS.gene64197.t1 AT2G28350 60.870 46 18 0 19 64 173 218 6.77e-11 61.2
MS.gene64197.t1 AT4G30080 53.333 60 26 1 5 64 166 223 7.96e-11 60.8

Find 49 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTACAATCCGGATATT+TGG 0.204347 1.3:+1391535 MS.gene64197:CDS
TTTATTAAAGTACCCGAAAA+TGG 0.240625 1.3:+1391673 MS.gene64197:CDS
GGAAAGATGAAAAGGCTTTC+CGG 0.303613 1.3:-1391488 None:intergenic
AGCAAAATAGGGTTAGTGTT+TGG 0.311735 1.3:+1391453 MS.gene64197:CDS
GCAAAATAGGGTTAGTGTTT+GGG 0.321539 1.3:+1391454 MS.gene64197:CDS
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1.3:+1391270 MS.gene64197:CDS
CCGTTACAATCCGGATATTT+GGG 0.343089 1.3:+1391536 MS.gene64197:CDS
GGTGTGGTGATAAGCAAAAT+AGG 0.358353 1.3:+1391441 MS.gene64197:CDS
GTTTGTTTGTCGGATCAAAA+AGG 0.368222 1.3:+1390781 MS.gene64197:CDS
CCATTGCTGTTGATCACCTA+TGG 0.407564 1.3:-1391768 None:intergenic
CTTAGAACCAGGCCACCTTA+AGG 0.409021 1.3:-1391254 None:intergenic
TTAGAACCAGGCCACCTTAA+GGG 0.411042 1.3:-1391253 None:intergenic
TTGTAAATAAACAGGCTGAA+TGG 0.413200 1.3:+1391408 MS.gene64197:intron
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1.3:+1391409 MS.gene64197:intron
AACTCTGGAATGGTGATTGC+CGG 0.434268 1.3:+1390246 MS.gene64197:CDS
TTTAGACTTGAAGTCAAAGA+AGG 0.444901 1.3:-1391509 None:intergenic
AAGAAACTTACCCAAATATC+CGG 0.446011 1.3:-1391546 None:intergenic
CTTTGACTTCAAGTCTAAAA+CGG 0.448239 1.3:+1391513 MS.gene64197:CDS
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1.3:+1391125 MS.gene64197:CDS
GTCGATCCCTTAAGGTGGCC+TGG 0.457511 1.3:+1391247 MS.gene64197:CDS
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1.3:-1391496 None:intergenic
AAGAGACACCTTCTCACAAC+GGG 0.474222 1.3:+1390753 MS.gene64197:CDS
AGATATATGGGTACAATTGT+TGG 0.476234 1.3:+1391214 MS.gene64197:CDS
CTAAAACGGCCGTTACAATC+CGG 0.494047 1.3:+1391527 MS.gene64197:CDS
TGTATATCAACTACTGATGA+TGG 0.494800 1.3:-1391175 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1.3:+1391419 MS.gene64197:intron
ACGGGTTGGAGTTTGTTTGT+CGG 0.505288 1.3:+1390771 MS.gene64197:CDS
GTGTGGTGATAAGCAAAATA+GGG 0.509449 1.3:+1391442 MS.gene64197:CDS
TTAGTGATGTCGATCCCTTA+AGG 0.537210 1.3:+1391239 MS.gene64197:CDS
TGTTTGGGAGATCGAGCCTC+CGG 0.542745 1.3:+1391469 MS.gene64197:CDS
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1.3:+1391425 MS.gene64197:CDS
GAAAAGATATTACGAGGAGA+TGG 0.543102 1.3:+1390275 MS.gene64197:CDS
CCCAAATATCCGGATTGTAA+CGG 0.559486 1.3:-1391536 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1.3:-1390761 None:intergenic
GAATTAATGGAACTCTGGAA+TGG 0.574791 1.3:+1390236 None:intergenic
ATATTTCGCCACTTAGAACC+AGG 0.586883 1.3:-1391265 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1.3:+1390757 MS.gene64197:CDS
TTGTGATGCAGAAAATGAGT+GGG 0.592216 1.3:+1391630 MS.gene64197:intron
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1.3:+1391420 MS.gene64197:intron
ATTAAAGTACCCGAAAATGG+AGG 0.613065 1.3:+1391676 MS.gene64197:CDS
GAGAAGTCGCAATTGCGAGT+TGG 0.615554 1.3:+1391118 MS.gene64197:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.634814 1.3:+1391257 MS.gene64197:CDS
ACCCGAAAATGGAGGAACAA+TGG 0.635146 1.3:+1391684 MS.gene64197:CDS
GAAGAGACACCTTCTCACAA+CGG 0.684005 1.3:+1390752 MS.gene64197:CDS
TTTGTGATGCAGAAAATGAG+TGG 0.686133 1.3:+1391629 MS.gene64197:intron
GTGATGTCGATCCCTTAAGG+TGG 0.694797 1.3:+1391242 MS.gene64197:CDS
AGAAATGAAAAGATATTACG+AGG 0.708127 1.3:+1390269 MS.gene64197:CDS
AAGATGAAAAGGCTTTCCGG+AGG 0.719876 1.3:-1391485 None:intergenic
TGTGATGCAGAAAATGAGTG+GGG 0.728289 1.3:+1391631 MS.gene64197:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACATTAATGATTTTTCA+TGG + chr1.3:1390481-1390500 MS.gene64197:intron 15.0%
!!! TTTAAGACTAATTATTTTGA+AGG - chr1.3:1390686-1390705 None:intergenic 15.0%
!! AAATTTCCTTGTAAATAAAC+AGG + chr1.3:1391400-1391419 MS.gene64197:intron 20.0%
!! AGTTTCTATCTAAGAATTAT+GGG + chr1.3:1390504-1390523 MS.gene64197:intron 20.0%
! ACATACTATTGATCAATTGT+TGG + chr1.3:1390339-1390358 MS.gene64197:intron 25.0%
! AGAAATGAAAAGATATTACG+AGG + chr1.3:1390269-1390288 MS.gene64197:CDS 25.0%
! GAGTTTCTATCTAAGAATTA+TGG + chr1.3:1390503-1390522 MS.gene64197:intron 25.0%
! TCAGTAAATGACTAATTGTA+TGG + chr1.3:1391329-1391348 MS.gene64197:intron 25.0%
! TGTTATGTAGAGATGATTAT+TGG - chr1.3:1391061-1391080 None:intergenic 25.0%
!! AACAATAATAGCATTGAAAC+AGG - chr1.3:1390636-1390655 None:intergenic 25.0%
!! AATGTAATGGTTTTCGATAT+TGG + chr1.3:1390989-1391008 MS.gene64197:intron 25.0%
!! AGATGTTTTCTATAAACCAT+AGG + chr1.3:1391752-1391771 MS.gene64197:CDS 25.0%
!! ATGTAATGGTTTTCGATATT+GGG + chr1.3:1390990-1391009 MS.gene64197:intron 25.0%
!! GATCACTAATAGAGTTATTT+TGG + chr1.3:1391605-1391624 MS.gene64197:intron 25.0%
!! GTAATATCTTTTCATTTCTC+CGG - chr1.3:1390268-1390287 None:intergenic 25.0%
!! TTTATTAAAGTACCCGAAAA+TGG + chr1.3:1391673-1391692 MS.gene64197:CDS 25.0%
!! TTTTTCTCAATCAAACAGAA+AGG + chr1.3:1390397-1390416 MS.gene64197:intron 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG - chr1.3:1391674-1391693 None:intergenic 25.0%
!!! TCAAGTACAACATTTTGATA+AGG - chr1.3:1391587-1391606 None:intergenic 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG - chr1.3:1391673-1391692 None:intergenic 25.0%
AAGAAACTTACCCAAATATC+CGG - chr1.3:1391549-1391568 None:intergenic 30.0%
ACTGATAGATCTTAATGACA+GGG - chr1.3:1391314-1391333 None:intergenic 30.0%
AGATATATGGGTACAATTGT+TGG + chr1.3:1391214-1391233 MS.gene64197:CDS 30.0%
ATTCAGCCTGTTTATTTACA+AGG - chr1.3:1391409-1391428 None:intergenic 30.0%
CTCTTAGGTTATCTGAATAT+AGG + chr1.3:1390887-1390906 MS.gene64197:intron 30.0%
TAAGATATACTCTGTTGAAC+TGG + chr1.3:1391370-1391389 MS.gene64197:intron 30.0%
TACTGATAGATCTTAATGAC+AGG - chr1.3:1391315-1391334 None:intergenic 30.0%
TCAAAGAAGGAAAGATGAAA+AGG - chr1.3:1391499-1391518 None:intergenic 30.0%
TCTATCTAAGAATTATGGGA+TGG + chr1.3:1390508-1390527 MS.gene64197:intron 30.0%
TGACCTACATGAAAAATGTA+AGG - chr1.3:1390729-1390748 None:intergenic 30.0%
TGATGTGTCAATTGTTTCAA+GGG + chr1.3:1391093-1391112 MS.gene64197:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG + chr1.3:1391409-1391428 MS.gene64197:intron 30.0%
TGTATATCAACTACTGATGA+TGG - chr1.3:1391178-1391197 None:intergenic 30.0%
TTGTAAATAAACAGGCTGAA+TGG + chr1.3:1391408-1391427 MS.gene64197:intron 30.0%
TTTAGACTTGAAGTCAAAGA+AGG - chr1.3:1391512-1391531 None:intergenic 30.0%
TTTCGATATTGGGAAAATTG+TGG + chr1.3:1391000-1391019 MS.gene64197:intron 30.0%
! ACATCTTCATCATGTTTTCT+TGG - chr1.3:1390572-1390591 None:intergenic 30.0%
! CAACATTTTACACAACTCTT+AGG + chr1.3:1390872-1390891 MS.gene64197:intron 30.0%
! CTCTTTTTCTGCAGATATAT+GGG + chr1.3:1391202-1391221 MS.gene64197:CDS 30.0%
! CTTTGACTTCAAGTCTAAAA+CGG + chr1.3:1391513-1391532 MS.gene64197:CDS 30.0%
! GAAGATGTTTTATAAACCAC+AGG + chr1.3:1390584-1390603 MS.gene64197:intron 30.0%
! GATCCTTACATTTTTCATGT+AGG + chr1.3:1390723-1390742 MS.gene64197:intron 30.0%
! GTGTTTTCTTGGTAAAGATT+TGG - chr1.3:1391727-1391746 None:intergenic 30.0%
! TAGCATTGAAACAGGTAAAA+AGG - chr1.3:1390628-1390647 None:intergenic 30.0%
! TGTTTTCTTGGTAAAGATTC+TGG - chr1.3:1390560-1390579 None:intergenic 30.0%
!! AGTACAACATTTTGATAAGG+TGG - chr1.3:1391584-1391603 None:intergenic 30.0%
!! GTACAACATTTTGATAAGGT+GGG - chr1.3:1391583-1391602 None:intergenic 30.0%
!!! GACTTGTTTTTTTTTCTCCA+TGG + chr1.3:1390957-1390976 MS.gene64197:intron 30.0%
ATGGTGACATTGCAATGTAA+TGG + chr1.3:1390976-1390995 MS.gene64197:intron 35.0%
ATTACATTGCAATGTCACCA+TGG - chr1.3:1390977-1390996 None:intergenic 35.0%
CCATATATCTGCAGAAAAAG+AGG - chr1.3:1391204-1391223 None:intergenic 35.0%
GAAAAGATATTACGAGGAGA+TGG + chr1.3:1390275-1390294 MS.gene64197:CDS 35.0%
GTGATGTGTCAATTGTTTCA+AGG + chr1.3:1391092-1391111 MS.gene64197:intron 35.0%
GTGTGGTGATAAGCAAAATA+GGG + chr1.3:1391442-1391461 MS.gene64197:CDS 35.0%
GTTTGTTTGTCGGATCAAAA+AGG + chr1.3:1390781-1390800 MS.gene64197:CDS 35.0%
TGTAAGGATCTAACTCAATC+AGG - chr1.3:1390713-1390732 None:intergenic 35.0%
TTCTAAGTGGCGAAATATTC+AGG + chr1.3:1391270-1391289 MS.gene64197:CDS 35.0%
TTCTTGGTAAAGATTCTGGT+AGG - chr1.3:1390556-1390575 None:intergenic 35.0%
TTGTGATGCAGAAAATGAGT+GGG + chr1.3:1391630-1391649 MS.gene64197:intron 35.0%
TTTGTGATGCAGAAAATGAG+TGG + chr1.3:1391629-1391648 MS.gene64197:intron 35.0%
! ACATCTTCATCGTGTTTTCT+TGG - chr1.3:1391738-1391757 None:intergenic 35.0%
! AGCAAAATAGGGTTAGTGTT+TGG + chr1.3:1391453-1391472 MS.gene64197:CDS 35.0%
! ATTAAAGTACCCGAAAATGG+AGG + chr1.3:1391676-1391695 MS.gene64197:CDS 35.0%
! CCTCTTTTTCTGCAGATATA+TGG + chr1.3:1391201-1391220 MS.gene64197:CDS 35.0%
! GCAAAATAGGGTTAGTGTTT+GGG + chr1.3:1391454-1391473 MS.gene64197:CDS 35.0%
! GCGATTCTGTTCTTTTTATC+AGG + chr1.3:1390814-1390833 MS.gene64197:CDS 35.0%
ATATTTCGCCACTTAGAACC+AGG - chr1.3:1391268-1391287 None:intergenic 40.0%
CCCAAATATCCGGATTGTAA+CGG - chr1.3:1391539-1391558 None:intergenic 40.0%
CCGTTACAATCCGGATATTT+GGG + chr1.3:1391536-1391555 MS.gene64197:CDS 40.0%
GGAAAGATGAAAAGGCTTTC+CGG - chr1.3:1391491-1391510 None:intergenic 40.0%
GGATCAAAAAGGCTTAAAGC+AGG + chr1.3:1390792-1390811 MS.gene64197:CDS 40.0%
GGTGTGGTGATAAGCAAAAT+AGG + chr1.3:1391441-1391460 MS.gene64197:CDS 40.0%
TGGTAAAGATTCTGGTAGGA+AGG - chr1.3:1390552-1390571 None:intergenic 40.0%
TGTGATGCAGAAAATGAGTG+GGG + chr1.3:1391631-1391650 MS.gene64197:intron 40.0%
TTAGTGATGTCGATCCCTTA+AGG + chr1.3:1391239-1391258 MS.gene64197:CDS 40.0%
! AGCCATTGTTCCTCCATTTT+CGG - chr1.3:1391689-1391708 None:intergenic 40.0%
AAATTCCACCACGCATTGTG+CGG - chr1.3:1390455-1390474 None:intergenic 45.0%
AAGAGACACCTTCTCACAAC+GGG + chr1.3:1390753-1390772 MS.gene64197:CDS 45.0%
AAGATGAAAAGGCTTTCCGG+AGG - chr1.3:1391488-1391507 None:intergenic 45.0%
ACCCGAAAATGGAGGAACAA+TGG + chr1.3:1391684-1391703 MS.gene64197:CDS 45.0%
CTAAAACGGCCGTTACAATC+CGG + chr1.3:1391527-1391546 MS.gene64197:CDS 45.0%
GAAGAGACACCTTCTCACAA+CGG + chr1.3:1390752-1390771 MS.gene64197:CDS 45.0%
GCCGTTACAATCCGGATATT+TGG + chr1.3:1391535-1391554 MS.gene64197:CDS 45.0%
TTAGAACCAGGCCACCTTAA+GGG - chr1.3:1391256-1391275 None:intergenic 45.0%
! CGATTGTTGTTCACAACCTG+TGG - chr1.3:1390603-1390622 None:intergenic 45.0%
! GCCATTGTTCCTCCATTTTC+GGG - chr1.3:1391688-1391707 None:intergenic 45.0%
! TTTTGCTTATCACCACACCC+TGG - chr1.3:1391440-1391459 None:intergenic 45.0%
!! AACTCTGGAATGGTGATTGC+CGG + chr1.3:1390246-1390265 MS.gene64197:CDS 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG + chr1.3:1390771-1390790 MS.gene64197:CDS 45.0%
AACTCCAACCCGTTGTGAGA+AGG - chr1.3:1390764-1390783 None:intergenic 50.0%
AATTCCACCACGCATTGTGC+GGG - chr1.3:1390454-1390473 None:intergenic 50.0%
CTTAGAACCAGGCCACCTTA+AGG - chr1.3:1391257-1391276 None:intergenic 50.0%
GAGAAGTCGCAATTGCGAGT+TGG + chr1.3:1391118-1391137 MS.gene64197:CDS 50.0%
GTGATGTCGATCCCTTAAGG+TGG + chr1.3:1391242-1391261 MS.gene64197:CDS 50.0%
!! ATTTTGACCCGCACAATGCG+TGG + chr1.3:1390444-1390463 MS.gene64197:intron 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG + chr1.3:1391125-1391144 MS.gene64197:CDS 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG + chr1.3:1391257-1391276 MS.gene64197:CDS 50.0%
AGGCTGAATGGGATGAGCCA+GGG + chr1.3:1391420-1391439 MS.gene64197:intron 55.0%
GACACCTTCTCACAACGGGT+TGG + chr1.3:1390757-1390776 MS.gene64197:CDS 55.0%
TGTTTGGGAGATCGAGCCTC+CGG + chr1.3:1391469-1391488 MS.gene64197:CDS 55.0%
CAGGCTGAATGGGATGAGCC+AGG + chr1.3:1391419-1391438 MS.gene64197:intron 60.0%
GAATGGGATGAGCCAGGGTG+TGG + chr1.3:1391425-1391444 MS.gene64197:CDS 60.0%
GTCGATCCCTTAAGGTGGCC+TGG + chr1.3:1391247-1391266 MS.gene64197:CDS 60.0%
TTGACCCGCACAATGCGTGG+TGG + chr1.3:1390447-1390466 MS.gene64197:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 1390242 1391777 1390242 ID=MS.gene64197
chr1.3 mRNA 1390242 1391777 1390242 ID=MS.gene64197.t1;Parent=MS.gene64197
chr1.3 exon 1390242 1390296 1390242 ID=MS.gene64197.t1.exon1;Parent=MS.gene64197.t1
chr1.3 CDS 1390242 1390296 1390242 ID=cds.MS.gene64197.t1;Parent=MS.gene64197.t1
chr1.3 exon 1390745 1390835 1390745 ID=MS.gene64197.t1.exon2;Parent=MS.gene64197.t1
chr1.3 CDS 1390745 1390835 1390745 ID=cds.MS.gene64197.t1;Parent=MS.gene64197.t1
chr1.3 exon 1391114 1391291 1391114 ID=MS.gene64197.t1.exon3;Parent=MS.gene64197.t1
chr1.3 CDS 1391114 1391291 1391114 ID=cds.MS.gene64197.t1;Parent=MS.gene64197.t1
chr1.3 exon 1391422 1391557 1391422 ID=MS.gene64197.t1.exon4;Parent=MS.gene64197.t1
chr1.3 CDS 1391422 1391557 1391422 ID=cds.MS.gene64197.t1;Parent=MS.gene64197.t1
chr1.3 exon 1391641 1391777 1391641 ID=MS.gene64197.t1.exon5;Parent=MS.gene64197.t1
chr1.3 CDS 1391641 1391777 1391641 ID=cds.MS.gene64197.t1;Parent=MS.gene64197.t1
Gene Sequence

>MS.gene64197

ATGGAACTCTGGAATGGTGATTGCCGGAGAAATGAAAAGATATTACGAGGAGATGGTAGTTGTTTCTACAATACATAAAAGAAGCTTGAATTACGATACATACTATTGATCAATTGTTGGTTTGTTTGTTTTAGTTGATTATGTATATATTTTGATTTTTCTCAATCAAACAGAAAGGAATGTCAATTATAAAAGCAACTATATTTTGACCCGCACAATGCGTGGTGGAATTTGATAAAAAAACATTAATGATTTTTCATGGAGTTTCTATCTAAGAATTATGGGATGGCAAAATATTTGTTCACAACCTTCCTACCAGAATCTTTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTTGTGAACAACAATCGAGCCTTTTTACCTGTTTCAATGCTATTATTGTTTGAGTTTAAATGTTTTCTTTATCTTAACCTTCAAAATAATTAGTCTTAAAAGAGCCTGATTGAGTTAGATCCTTACATTTTTCATGTAGGTCATCTGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGATCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGTAAATTTTGTTTACTTCATTTCTGTCAAGTAGCTACAACATTTTACACAACTCTTAGGTTATCTGAATATAGGTAGAATAACTAGTGTGCAGAACAAAGTCTGCATAATTTTTCTAATTAGACTTGTTTTTTTTTCTCCATGGTGACATTGCAATGTAATGGTTTTCGATATTGGGAAAATTGTGGAATTCTGATTAGCAACTTATTATTTTAAATTGCAACCAATAATCATCTCTACATAACATAATACTAAATGTGATGTGTCAATTGTTTCAAGGGACGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTAGTTGATATACATTTCCTCTTTTTCTGCAGATATATGGGTACAATTGTTGGTATTAGTGATGTCGATCCCTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTAGCTTAAGTTCTAGTAACCCTGTCATTAAGATCTATCAGTAAATGACTAATTGTATGGTTTAATCTAATATTTCTTTAAGATATACTCTGTTGAACTGGCTTAAGTAAATTTCCTTGTAAATAAACAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGGGTTAGTGTTTGGGAGATCGAGCCTCCGGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGTCTAAAACGGCCGTTACAATCCGGATATTTGGGTAAGTTTCTTAATTCTCTATTCCCACCTTATCAAAATGTTGTACTTGATCACTAATAGAGTTATTTTGGTTTTGTGATGCAGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGGAGGAACAATGGCTCTCTCAAACTCAATGCCAAATCTTTACCAAGAAAACACGATGAAGATGTTTTCTATAAACCATAGGTGA
Protein sequence

>MS.gene64197.t1

MELWNGDCRRNEKILRGDGHLKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVVDIHFLFFCRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIEPPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENGGTMALSNSMPNLYQENTMKMFSINHR