Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64212.t1 | AFK49400.1 | 94.8 | 326 | 16 | 1 | 15 | 340 | 79 | 403 | 4.40E-161 | 577.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64212.t1 | G7I760 | 94.8 | 326 | 16 | 1 | 15 | 340 | 79 | 403 | 3.2e-161 | 577.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64212.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64212.t1 | MTR_1g024980 | 97.853 | 326 | 6 | 1 | 15 | 340 | 79 | 403 | 0.0 | 651 |
MS.gene64212.t1 | MTR_3g072920 | 59.854 | 274 | 87 | 7 | 81 | 337 | 183 | 450 | 2.60e-109 | 326 |
MS.gene64212.t1 | MTR_4g081420 | 50.833 | 240 | 105 | 3 | 108 | 337 | 200 | 436 | 3.90e-71 | 228 |
MS.gene64212.t1 | MTR_3g463270 | 44.151 | 265 | 121 | 10 | 93 | 338 | 133 | 389 | 4.76e-60 | 197 |
MS.gene64212.t1 | MTR_2g010860 | 43.460 | 237 | 117 | 6 | 113 | 337 | 145 | 376 | 2.74e-52 | 177 |
MS.gene64212.t1 | MTR_2g010870 | 40.816 | 245 | 120 | 5 | 113 | 337 | 116 | 355 | 3.89e-50 | 171 |
MS.gene64212.t1 | MTR_5g012220 | 40.097 | 207 | 100 | 7 | 135 | 338 | 105 | 290 | 1.34e-37 | 136 |
MS.gene64212.t1 | MTR_4g101450 | 40.609 | 197 | 86 | 6 | 146 | 338 | 106 | 275 | 1.53e-37 | 135 |
MS.gene64212.t1 | MTR_5g094440 | 34.466 | 206 | 118 | 7 | 138 | 336 | 74 | 269 | 1.27e-29 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64212.t1 | AT1G75710 | 62.953 | 359 | 97 | 9 | 15 | 339 | 104 | 460 | 7.55e-139 | 402 |
MS.gene64212.t1 | AT4G27240 | 42.535 | 355 | 161 | 9 | 15 | 337 | 87 | 430 | 2.22e-71 | 228 |
MS.gene64212.t1 | AT5G54630 | 49.388 | 245 | 98 | 5 | 113 | 337 | 233 | 471 | 9.97e-70 | 225 |
MS.gene64212.t1 | AT4G27240 | 41.641 | 329 | 149 | 9 | 15 | 311 | 87 | 404 | 7.18e-59 | 196 |
MS.gene64212.t1 | AT2G29660 | 42.972 | 249 | 116 | 7 | 113 | 338 | 128 | 373 | 5.78e-55 | 184 |
MS.gene64212.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 113 | 337 | 129 | 364 | 1.44e-41 | 149 |
MS.gene64212.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 113 | 337 | 129 | 364 | 1.44e-41 | 149 |
MS.gene64212.t1 | AT4G12450 | 35.160 | 219 | 100 | 5 | 130 | 338 | 91 | 277 | 3.69e-32 | 121 |
MS.gene64212.t1 | AT4G22560 | 37.981 | 208 | 90 | 6 | 135 | 338 | 92 | 264 | 1.38e-30 | 117 |
MS.gene64212.t1 | AT1G62520 | 36.585 | 205 | 104 | 7 | 136 | 338 | 100 | 280 | 6.33e-30 | 115 |
Find 94 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1.3:+1203180 | None:intergenic |
CTTCGATCTGTTTGCATGTT+AGG | 0.213526 | 1.3:+1204262 | None:intergenic |
ACTCGTTCTGCATCATGTTC+TGG | 0.262275 | 1.3:-1204033 | MS.gene64212:CDS |
CGGTTGGAGAAGATTCTAAA+AGG | 0.273622 | 1.3:-1200429 | MS.gene64212:CDS |
CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1.3:+1203225 | None:intergenic |
CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1.3:-1203966 | MS.gene64212:CDS |
TCCACCCTTTGCGCTGTGCC+TGG | 0.313978 | 1.3:-1200541 | MS.gene64212:CDS |
CGAGTTGATGAAGCAGTAAT+AGG | 0.323514 | 1.3:+1204051 | None:intergenic |
GATTCCATTGCGGGGAATGC+TGG | 0.326389 | 1.3:-1200313 | MS.gene64212:CDS |
AGCTTTAGAGATGTTGTTCA+TGG | 0.351657 | 1.3:-1204159 | MS.gene64212:CDS |
CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1.3:+1203231 | None:intergenic |
ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1.3:-1204103 | MS.gene64212:CDS |
CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1.3:+1200381 | None:intergenic |
CTCGTTCTGCATCATGTTCT+GGG | 0.404522 | 1.3:-1204032 | MS.gene64212:CDS |
ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1.3:-1203955 | MS.gene64212:CDS |
GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1.3:+1203181 | None:intergenic |
CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1.3:-1203184 | MS.gene64212:CDS |
GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1.3:-1200814 | MS.gene64212:CDS |
CTTGTGTGCCGCGTAATTGC+CGG | 0.434569 | 1.3:-1200400 | MS.gene64212:CDS |
TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1.3:-1200830 | MS.gene64212:intron |
ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1.3:+1200805 | None:intergenic |
TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1.3:-1200829 | MS.gene64212:intron |
CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1.3:+1200686 | None:intergenic |
GTTGCCATCTGCGGCACACC+GGG | 0.446676 | 1.3:+1200621 | None:intergenic |
GGTGGTGTCGGAGGAGGAAA+TGG | 0.447453 | 1.3:-1200344 | MS.gene64212:CDS |
CTTTGCGCTGTGCCTGGATG+CGG | 0.464668 | 1.3:-1200535 | MS.gene64212:CDS |
GCGGAGTTTGCAACATCATC+CGG | 0.466040 | 1.3:-1200516 | MS.gene64212:CDS |
TGCACCGGTGGTGTCGGAGG+AGG | 0.468864 | 1.3:-1200350 | MS.gene64212:CDS |
AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1.3:+1203904 | None:intergenic |
GGAAGGTGCACCGGTGGTGT+CGG | 0.478428 | 1.3:-1200356 | MS.gene64212:CDS |
ATTCCATTGCGGGGAATGCT+GGG | 0.485252 | 1.3:-1200312 | MS.gene64212:CDS |
AGGCACAGCGCAAAGGGTGG+AGG | 0.488877 | 1.3:+1200543 | None:intergenic |
TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1.3:-1204102 | MS.gene64212:CDS |
GCATCCAGGCACAGCGCAAA+GGG | 0.492013 | 1.3:+1200537 | None:intergenic |
ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1.3:-1200695 | MS.gene64212:CDS |
CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1.3:+1200651 | None:intergenic |
TGGTAGGGCCCACGACAATT+CGG | 0.496075 | 1.3:-1200449 | MS.gene64212:CDS |
AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1.3:+1203905 | None:intergenic |
GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1.3:-1200377 | MS.gene64212:CDS |
TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1.3:+1200650 | None:intergenic |
ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1.3:-1203918 | MS.gene64212:intron |
CGCATCCAGGCACAGCGCAA+AGG | 0.505355 | 1.3:+1200536 | None:intergenic |
CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1.3:-1203156 | MS.gene64212:intron |
ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1.3:+1200590 | None:intergenic |
GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1.3:-1204137 | MS.gene64212:CDS |
AGGTGCACCGGTGGTGTCGG+AGG | 0.521522 | 1.3:-1200353 | MS.gene64212:CDS |
AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1.3:+1200253 | None:intergenic |
CGTTGCCATCTGCGGCACAC+CGG | 0.527397 | 1.3:+1200620 | None:intergenic |
CGATCTGTTTGCATGTTAGG+AGG | 0.530379 | 1.3:+1204265 | None:intergenic |
GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1.3:-1200373 | MS.gene64212:CDS |
GGTTGGAGAAGATTCTAAAA+GGG | 0.542282 | 1.3:-1200428 | MS.gene64212:CDS |
AATCCCCGGTGTGCCGCAGA+TGG | 0.542426 | 1.3:-1200625 | MS.gene64212:CDS |
GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1.3:+1200707 | None:intergenic |
ATGTTGCAAACTCCGCATCC+AGG | 0.550457 | 1.3:+1200523 | None:intergenic |
GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1.3:-1204012 | MS.gene64212:CDS |
AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1.3:-1200777 | MS.gene64212:CDS |
AGACCAATGCTAGTAGTGGT+AGG | 0.560855 | 1.3:-1200465 | MS.gene64212:CDS |
TTGTGTGCCGCGTAATTGCC+GGG | 0.563188 | 1.3:-1200399 | MS.gene64212:CDS |
TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1.3:+1204002 | None:intergenic |
TCACTTTCCCGGCAATTACG+CGG | 0.565013 | 1.3:+1200392 | None:intergenic |
GGCCCTACCACTACTAGCAT+TGG | 0.565787 | 1.3:+1200462 | None:intergenic |
ATTTCCTCCTCCGACACCAC+CGG | 0.566681 | 1.3:+1200346 | None:intergenic |
TTCTCCAACCGAATTGTCGT+GGG | 0.568898 | 1.3:+1200441 | None:intergenic |
TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1.3:+1204099 | None:intergenic |
ACTCCCAGCATTCCCCGCAA+TGG | 0.570065 | 1.3:+1200309 | None:intergenic |
GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1.3:-1200362 | MS.gene64212:CDS |
CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1.3:-1200741 | MS.gene64212:CDS |
GACCAATGCTAGTAGTGGTA+GGG | 0.577528 | 1.3:-1200464 | MS.gene64212:CDS |
TCCAGGCACAGCGCAAAGGG+TGG | 0.581274 | 1.3:+1200540 | None:intergenic |
ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1.3:+1200739 | None:intergenic |
AGGGCCCACGACAATTCGGT+TGG | 0.586441 | 1.3:-1200445 | MS.gene64212:CDS |
CTTCTCCAACCGAATTGTCG+TGG | 0.589666 | 1.3:+1200440 | None:intergenic |
AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1.3:-1200821 | MS.gene64212:CDS |
TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1.3:-1200568 | MS.gene64212:CDS |
CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1.3:-1200365 | MS.gene64212:CDS |
ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1.3:-1200577 | MS.gene64212:CDS |
TCATCATCATCATCTTCAAG+AGG | 0.611489 | 1.3:-1203979 | MS.gene64212:CDS |
GTCAAGACCAATGCTAGTAG+TGG | 0.621391 | 1.3:-1200469 | MS.gene64212:CDS |
GAGGAGTTCGTTGCCATCTG+CGG | 0.630941 | 1.3:+1200612 | None:intergenic |
TTGCCATCTGCGGCACACCG+GGG | 0.645965 | 1.3:+1200622 | None:intergenic |
TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1.3:+1200238 | None:intergenic |
CTAACATGCAAACAGATCGA+AGG | 0.664448 | 1.3:-1204261 | MS.gene64212:intron |
CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1.3:-1200380 | MS.gene64212:CDS |
GTTTGCAACATCATCCGGCA+CGG | 0.666115 | 1.3:-1200511 | MS.gene64212:CDS |
TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1.3:-1204018 | MS.gene64212:CDS |
CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1.3:+1200584 | None:intergenic |
TGCCGGGAAAGTGAAGCGCG+TGG | 0.677049 | 1.3:-1200383 | MS.gene64212:CDS |
GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1.3:+1200593 | None:intergenic |
ACACACAACGAACAATCCAA+CGG | 0.693116 | 1.3:-1200702 | MS.gene64212:CDS |
TCGTTGTGATCAGTGTGGAG+AGG | 0.714771 | 1.3:-1203208 | MS.gene64212:CDS |
GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1.3:-1200680 | MS.gene64212:CDS |
TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1.3:-1204015 | MS.gene64212:CDS |
TGCAAGGTATTCGATCAACA+CGG | 0.737085 | 1.3:+1200208 | None:intergenic |
TTATGTCGTTGTGATCAGTG+TGG | 0.816235 | 1.3:-1203213 | MS.gene64212:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTTATAATTATATTT+AGG | - | chr1.3:1200706-1200725 | MS.gene64212:CDS | 0.0% |
!! | AAATATTATTTATTATTATT+AGG | - | chr1.3:1203216-1203235 | MS.gene64212:CDS | 0.0% |
!!! | AATTTTTTTTGACAAAATTT+AGG | - | chr1.3:1200736-1200755 | MS.gene64212:CDS | 10.0% |
!!! | ACATAATAATTTTATTCAAT+TGG | + | chr1.3:1202413-1202432 | None:intergenic | 10.0% |
!!! | GTTTTTAAAAATTTGATATA+TGG | - | chr1.3:1200781-1200800 | MS.gene64212:CDS | 10.0% |
!! | AAAGTTATAATTGAAAAATG+TGG | + | chr1.3:1201033-1201052 | None:intergenic | 15.0% |
!! | AACTATATAATTATACTAGT+AGG | + | chr1.3:1203404-1203423 | None:intergenic | 15.0% |
!! | AGAAAAGTTACTTATAAAAA+AGG | - | chr1.3:1202193-1202212 | MS.gene64212:intron | 15.0% |
!! | ATTATTGTTTAAATTTAGGT+TGG | - | chr1.3:1202557-1202576 | MS.gene64212:intron | 15.0% |
!! | GTGAATTATTGTTTAAATTT+AGG | - | chr1.3:1202553-1202572 | MS.gene64212:intron | 15.0% |
!! | TAATTATGTATAGAGTTTAA+TGG | - | chr1.3:1203438-1203457 | MS.gene64212:intron | 15.0% |
!! | AAGTATACTTATAGATTCTT+AGG | - | chr1.3:1203602-1203621 | MS.gene64212:intron | 20.0% |
!! | AATAACTCACTATAATTGAA+TGG | + | chr1.3:1201001-1201020 | None:intergenic | 20.0% |
!! | AATAATGGTTACTCAAAATT+AGG | - | chr1.3:1200301-1200320 | MS.gene64212:CDS | 20.0% |
!! | ATCTTACTTTCACTTATATA+TGG | - | chr1.3:1201537-1201556 | MS.gene64212:intron | 20.0% |
!! | CTCATCAAAAATATCTTTAT+GGG | - | chr1.3:1201706-1201725 | MS.gene64212:intron | 20.0% |
!! | TATAATTGAAAAATGTGGTT+GGG | + | chr1.3:1201028-1201047 | None:intergenic | 20.0% |
!! | TCTCATCAAAAATATCTTTA+TGG | - | chr1.3:1201705-1201724 | MS.gene64212:intron | 20.0% |
!! | TTATAATTGAAAAATGTGGT+TGG | + | chr1.3:1201029-1201048 | None:intergenic | 20.0% |
!! | TTGCTCATAAAATAAGATAT+TGG | + | chr1.3:1200958-1200977 | None:intergenic | 20.0% |
!! | TTTAGTATAAATATACTCGT+TGG | - | chr1.3:1202222-1202241 | MS.gene64212:intron | 20.0% |
!!! | GCTAAGTAATTAATTTTCAT+AGG | + | chr1.3:1201219-1201238 | None:intergenic | 20.0% |
!!! | GTATTTTTTTTTTCATACTC+AGG | - | chr1.3:1201248-1201267 | MS.gene64212:intron | 20.0% |
!!! | TAGGAATATTCTTATTTTCT+TGG | - | chr1.3:1203621-1203640 | MS.gene64212:intron | 20.0% |
!!! | TAGGAATCTAATTCTTTTTA+TGG | - | chr1.3:1203123-1203142 | MS.gene64212:intron | 20.0% |
!!! | TCTTTTAATTAGAATACAAG+AGG | + | chr1.3:1202176-1202195 | None:intergenic | 20.0% |
!!! | TTAAGTCTTTTCATTTCTAA+AGG | - | chr1.3:1201172-1201191 | MS.gene64212:intron | 20.0% |
! | AACTAACAAGAATTTAGATG+TGG | - | chr1.3:1201635-1201654 | MS.gene64212:intron | 25.0% |
! | GAATAGAAGAGTTAATATGT+TGG | + | chr1.3:1201600-1201619 | None:intergenic | 25.0% |
! | GTGATATATTGTGAATGAAT+CGG | + | chr1.3:1202703-1202722 | None:intergenic | 25.0% |
! | GTGTCTAAATTATCTTTAAC+CGG | - | chr1.3:1202141-1202160 | MS.gene64212:intron | 25.0% |
! | GTGTTACAAAATGTATTGTT+AGG | - | chr1.3:1202475-1202494 | MS.gene64212:intron | 25.0% |
! | TAAAATTGAATCATGTGTGT+GGG | - | chr1.3:1201746-1201765 | MS.gene64212:intron | 25.0% |
! | TATAGTAAATGTGATACGAA+AGG | + | chr1.3:1201497-1201516 | None:intergenic | 25.0% |
! | TCAAAACCAAACAACAATAA+TGG | - | chr1.3:1200286-1200305 | MS.gene64212:CDS | 25.0% |
! | TGAGCATGCATAAAAAAAAT+TGG | + | chr1.3:1203581-1203600 | None:intergenic | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | - | chr1.3:1201976-1201995 | MS.gene64212:intron | 25.0% |
! | TTGTAAATAACTACGAAACA+AGG | + | chr1.3:1204270-1204289 | None:intergenic | 25.0% |
! | TTGTTAGGACAAATTAACAT+CGG | - | chr1.3:1202490-1202509 | MS.gene64212:intron | 25.0% |
!! | AACAAACTCTTTTCATTAGT+TGG | + | chr1.3:1202446-1202465 | None:intergenic | 25.0% |
!! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1.3:1200826-1200845 | MS.gene64212:intron | 25.0% |
!! | ATTTTATGAGCAATCTACTT+TGG | - | chr1.3:1200965-1200984 | MS.gene64212:intron | 25.0% |
!! | TAGTTTTCTATCGTATGATA+TGG | + | chr1.3:1202988-1203007 | None:intergenic | 25.0% |
!! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1.3:1201459-1201478 | None:intergenic | 25.0% |
!!! | AACCACTTTTTGACAATTTT+TGG | + | chr1.3:1202061-1202080 | None:intergenic | 25.0% |
!!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1.3:1201740-1201759 | None:intergenic | 25.0% |
!!! | ATGTTAGGAGGTTTTTTATT+TGG | + | chr1.3:1200231-1200250 | None:intergenic | 25.0% |
!!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1.3:1201739-1201758 | None:intergenic | 25.0% |
!!! | TTATTGTTGTTTGGTTTTGA+AGG | + | chr1.3:1200286-1200305 | None:intergenic | 25.0% |
!!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr1.3:1201963-1201982 | MS.gene64212:intron | 25.0% |
!!! | TTTTCTAGTTATCTTCTTCT+TGG | - | chr1.3:1201882-1201901 | MS.gene64212:intron | 25.0% |
AAAAACAATGGAGAGAGAAA+AGG | - | chr1.3:1201988-1202007 | MS.gene64212:intron | 30.0% | |
AAAACAATGGAGAGAGAAAA+GGG | - | chr1.3:1201989-1202008 | MS.gene64212:intron | 30.0% | |
AAAATTGAATCATGTGTGTG+GGG | - | chr1.3:1201747-1201766 | MS.gene64212:intron | 30.0% | |
AAACATTATGTTAACCTGCT+AGG | + | chr1.3:1200604-1200623 | None:intergenic | 30.0% | |
AAATATCTTCTAGTACTGCT+GGG | - | chr1.3:1202254-1202273 | MS.gene64212:intron | 30.0% | |
AACATTATGTTAACCTGCTA+GGG | + | chr1.3:1200603-1200622 | None:intergenic | 30.0% | |
AGATAATCTTCAAATCTAGC+TGG | - | chr1.3:1203728-1203747 | MS.gene64212:intron | 30.0% | |
ATTAATTCACCTTGTTACGA+TGG | + | chr1.3:1203260-1203279 | None:intergenic | 30.0% | |
CAAATACACTACTACTACAA+TGG | - | chr1.3:1202955-1202974 | MS.gene64212:intron | 30.0% | |
CCATATAGAAATTCAAACCA+AGG | - | chr1.3:1203082-1203101 | MS.gene64212:intron | 30.0% | |
CTAAAATTGAATCATGTGTG+TGG | - | chr1.3:1201745-1201764 | MS.gene64212:intron | 30.0% | |
CTTCTATTCCAATTAATGCA+CGG | - | chr1.3:1201611-1201630 | MS.gene64212:intron | 30.0% | |
GTCCAAAAATTGTCAAAAAG+TGG | - | chr1.3:1202056-1202075 | MS.gene64212:intron | 30.0% | |
TACTAAGATAATGACATGCA+CGG | + | chr1.3:1201833-1201852 | None:intergenic | 30.0% | |
TAGTGTCAGTTTCTTATATG+TGG | + | chr1.3:1202921-1202940 | None:intergenic | 30.0% | |
TCAACAAAGTTGTCATCAAA+TGG | + | chr1.3:1201938-1201957 | None:intergenic | 30.0% | |
! | CATAACAAATGCACTTGTTT+TGG | + | chr1.3:1202737-1202756 | None:intergenic | 30.0% |
! | CATCTTCGAAATTTGAAACA+AGG | - | chr1.3:1201787-1201806 | MS.gene64212:intron | 30.0% |
! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1.3:1203085-1203104 | None:intergenic | 30.0% |
! | GAGTAACCATTATTGTTGTT+TGG | + | chr1.3:1200295-1200314 | None:intergenic | 30.0% |
! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1.3:1201791-1201810 | MS.gene64212:intron | 30.0% |
! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1.3:1203669-1203688 | MS.gene64212:intron | 30.0% |
!! | AAACAAGTGCATTTGTTATG+AGG | - | chr1.3:1202737-1202756 | MS.gene64212:intron | 30.0% |
!! | AACATCTCTAAAGCTACAAA+TGG | + | chr1.3:1200341-1200360 | None:intergenic | 30.0% |
!! | GTTTAAATTTAGGTTGGTAG+AGG | - | chr1.3:1202563-1202582 | MS.gene64212:intron | 30.0% |
!!! | TTTTTTGGGTGAATGAAACA+GGG | + | chr1.3:1202788-1202807 | None:intergenic | 30.0% |
!!! | TTTTTTTGGGTGAATGAAAC+AGG | + | chr1.3:1202789-1202808 | None:intergenic | 30.0% |
AAACAAGGAAGAATAGCTCT+TGG | + | chr1.3:1204255-1204274 | None:intergenic | 35.0% | |
ACAGTACTTGTAAAGCAACT+AGG | + | chr1.3:1201859-1201878 | None:intergenic | 35.0% | |
AGATAATTTAGACACCCCAA+AGG | + | chr1.3:1202136-1202155 | None:intergenic | 35.0% | |
AGTTCCAAGCTTTCAATCTT+AGG | + | chr1.3:1201328-1201347 | None:intergenic | 35.0% | |
CAAATATCTTCTAGTACTGC+TGG | - | chr1.3:1202253-1202272 | MS.gene64212:intron | 35.0% | |
CAGTACTTGTAAAGCAACTA+GGG | + | chr1.3:1201858-1201877 | None:intergenic | 35.0% | |
GAAACACTAGAGTTGTTCAT+AGG | - | chr1.3:1200368-1200387 | MS.gene64212:CDS | 35.0% | |
GATAATTTAGACACCCCAAA+GGG | + | chr1.3:1202135-1202154 | None:intergenic | 35.0% | |
GTCAGTTTCTTATATGTGGA+TGG | + | chr1.3:1202917-1202936 | None:intergenic | 35.0% | |
GTTAGTTACCGTGCATTAAT+TGG | + | chr1.3:1201622-1201641 | None:intergenic | 35.0% | |
GTTCCAAGCTTTCAATCTTA+GGG | + | chr1.3:1201327-1201346 | None:intergenic | 35.0% | |
TCATCATCATCATCTTCAAG+AGG | - | chr1.3:1200526-1200545 | MS.gene64212:CDS | 35.0% | |
TGTCAACTTAATGTAGTGTC+TGG | + | chr1.3:1203041-1203060 | None:intergenic | 35.0% | |
! | ATCGGTTGAGTTTTGCAAAA+TGG | - | chr1.3:1202508-1202527 | MS.gene64212:intron | 35.0% |
! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1.3:1201277-1201296 | None:intergenic | 35.0% |
! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1.3:1201790-1201809 | MS.gene64212:intron | 35.0% |
! | GGTTGGAGAAGATTCTAAAA+GGG | - | chr1.3:1204077-1204096 | MS.gene64212:CDS | 35.0% |
!! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1.3:1201564-1201583 | None:intergenic | 35.0% |
!! | AGCTTTAGAGATGTTGTTCA+TGG | - | chr1.3:1200346-1200365 | MS.gene64212:CDS | 35.0% |
!! | ATACAAGAGGTACTCTAATC+CGG | + | chr1.3:1202163-1202182 | None:intergenic | 35.0% |
!!! | AACAAATGCACTTGTTTTGG+TGG | + | chr1.3:1202734-1202753 | None:intergenic | 35.0% |
AAGATAATGACATGCACGGA+TGG | + | chr1.3:1201829-1201848 | None:intergenic | 40.0% | |
AATCAAGAGTTGTCACGTTG+TGG | + | chr1.3:1202886-1202905 | None:intergenic | 40.0% | |
ACACACAACGAACAATCCAA+CGG | - | chr1.3:1203803-1203822 | MS.gene64212:intron | 40.0% | |
ACGTGACAACTCTTGATTTC+TGG | - | chr1.3:1202888-1202907 | MS.gene64212:intron | 40.0% | |
AGTATCACTCCATCGTAACA+AGG | - | chr1.3:1203248-1203267 | MS.gene64212:intron | 40.0% | |
ATCACCAGAGAGTAGTATCT+TGG | - | chr1.3:1200402-1200421 | MS.gene64212:CDS | 40.0% | |
ATCCGTTCAATCTTGCACAT+TGG | + | chr1.3:1203769-1203788 | None:intergenic | 40.0% | |
ATGCAGTTTAGGAAGCTATC+TGG | - | chr1.3:1200550-1200569 | MS.gene64212:CDS | 40.0% | |
ATTGGTTATGTAGCCCTTTG+GGG | - | chr1.3:1202119-1202138 | MS.gene64212:intron | 40.0% | |
CAACGACATAATGTGCTTCT+AGG | + | chr1.3:1201283-1201302 | None:intergenic | 40.0% | |
CGGTTGGAGAAGATTCTAAA+AGG | - | chr1.3:1204076-1204095 | MS.gene64212:CDS | 40.0% | |
CTAACATGCAAACAGATCGA+AGG | - | chr1.3:1200244-1200263 | MS.gene64212:CDS | 40.0% | |
CTCCAATGTGCAAGATTGAA+CGG | - | chr1.3:1203764-1203783 | MS.gene64212:intron | 40.0% | |
CTTCAAGAGGAATGCAGTTT+AGG | - | chr1.3:1200539-1200558 | MS.gene64212:CDS | 40.0% | |
CTTCCCTAAGATTGAAAGCT+TGG | - | chr1.3:1201321-1201340 | MS.gene64212:intron | 40.0% | |
CTTCGATCTGTTTGCATGTT+AGG | + | chr1.3:1200246-1200265 | None:intergenic | 40.0% | |
GTGTCTGGCTAATGATAACT+TGG | + | chr1.3:1203026-1203045 | None:intergenic | 40.0% | |
TCACCAGAGAGTAGTATCTT+GGG | - | chr1.3:1200403-1200422 | MS.gene64212:CDS | 40.0% | |
TTATGTCGTTGTGATCAGTG+TGG | - | chr1.3:1201292-1201311 | MS.gene64212:intron | 40.0% | |
TTCATTTCGACCTCTTGGAT+TGG | - | chr1.3:1202101-1202120 | MS.gene64212:intron | 40.0% | |
TTGAAACAAGGAGGGCAAAA+AGG | - | chr1.3:1201799-1201818 | MS.gene64212:intron | 40.0% | |
! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1.3:1204012-1204031 | MS.gene64212:CDS | 40.0% |
! | CTCTTTTCATTTCGACCTCT+TGG | - | chr1.3:1202096-1202115 | MS.gene64212:intron | 40.0% |
! | GATTGGTTATGTAGCCCTTT+GGG | - | chr1.3:1202118-1202137 | MS.gene64212:intron | 40.0% |
!! | CGAGTTGATGAAGCAGTAAT+AGG | + | chr1.3:1200457-1200476 | None:intergenic | 40.0% |
!! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1.3:1204011-1204030 | None:intergenic | 40.0% |
!! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1.3:1200487-1200506 | MS.gene64212:CDS | 40.0% |
!!! | GGTGTGTTTTGATTCCATTG+CGG | - | chr1.3:1204182-1204201 | MS.gene64212:intron | 40.0% |
!!! | GTGTGTTTTGATTCCATTGC+GGG | - | chr1.3:1204183-1204202 | MS.gene64212:intron | 40.0% |
!!! | TGTGTTTTGATTCCATTGCG+GGG | - | chr1.3:1204184-1204203 | MS.gene64212:intron | 40.0% |
ACACCACCAAGAAAAATCCC+CGG | - | chr1.3:1203866-1203885 | MS.gene64212:intron | 45.0% | |
ACTCGTTCTGCATCATGTTC+TGG | - | chr1.3:1200472-1200491 | MS.gene64212:CDS | 45.0% | |
AGACCAATGCTAGTAGTGGT+AGG | - | chr1.3:1204040-1204059 | MS.gene64212:CDS | 45.0% | |
ATAATGACATGCACGGATGG+TGG | + | chr1.3:1201826-1201845 | None:intergenic | 45.0% | |
ATAGCGATGTGCTGTGGAAA+CGG | + | chr1.3:1203918-1203937 | None:intergenic | 45.0% | |
CGATCTGTTTGCATGTTAGG+AGG | + | chr1.3:1200243-1200262 | None:intergenic | 45.0% | |
CTCGTTCTGCATCATGTTCT+GGG | - | chr1.3:1200473-1200492 | MS.gene64212:CDS | 45.0% | |
GACCAATGCTAGTAGTGGTA+GGG | - | chr1.3:1204041-1204060 | MS.gene64212:CDS | 45.0% | |
GAGAGAGAAAAGGGAAGAGA+GGG | - | chr1.3:1201998-1202017 | MS.gene64212:intron | 45.0% | |
GATTCCTAGTCCCTACAACT+CGG | + | chr1.3:1203111-1203130 | None:intergenic | 45.0% | |
GGATTGTTCGTTGTGTGTTG+TGG | + | chr1.3:1203801-1203820 | None:intergenic | 45.0% | |
GGCTACATAACCAATCCAAG+AGG | + | chr1.3:1202114-1202133 | None:intergenic | 45.0% | |
GTCAAGACCAATGCTAGTAG+TGG | - | chr1.3:1204036-1204055 | MS.gene64212:CDS | 45.0% | |
TACGAGATATCACAGCTGGA+TGG | - | chr1.3:1202835-1202854 | MS.gene64212:intron | 45.0% | |
TACGTACGAGATATCACAGC+TGG | - | chr1.3:1202831-1202850 | MS.gene64212:intron | 45.0% | |
TGACCCAAGATACTACTCTC+TGG | + | chr1.3:1200409-1200428 | None:intergenic | 45.0% | |
TGTTGAACAGTTTCGGAGCT+GGG | - | chr1.3:1203676-1203695 | MS.gene64212:intron | 45.0% | |
TTCTCCAACCGAATTGTCGT+GGG | + | chr1.3:1204067-1204086 | None:intergenic | 45.0% | |
TTGTTGAACAGTTTCGGAGC+TGG | - | chr1.3:1203675-1203694 | MS.gene64212:intron | 45.0% | |
! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1.3:1203703-1203722 | None:intergenic | 45.0% |
! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1.3:1204009-1204028 | MS.gene64212:CDS | 45.0% |
!! | GGATTGGTTATGTAGCCCTT+TGG | - | chr1.3:1202117-1202136 | MS.gene64212:intron | 45.0% |
!!! | GGGATTTTTCTTGGTGGTGT+TGG | + | chr1.3:1203866-1203885 | None:intergenic | 45.0% |
!!! | TAAAACATTTTTATTTTTTT+GGG | + | chr1.3:1202802-1202821 | None:intergenic | 5.0% |
!!! | TATTTTTTTAACAATATTAT+TGG | - | chr1.3:1200918-1200937 | MS.gene64212:intron | 5.0% |
!!! | TTAAAACATTTTTATTTTTT+TGG | + | chr1.3:1202803-1202822 | None:intergenic | 5.0% |
AACCAAGGTAGCCGAGTTGT+AGG | - | chr1.3:1203097-1203116 | MS.gene64212:intron | 50.0% | |
ACATCGCTATCGTGTGCACT+CGG | - | chr1.3:1203928-1203947 | MS.gene64212:CDS | 50.0% | |
ACATGATCGTTGACCCTAGC+AGG | - | chr1.3:1200587-1200606 | MS.gene64212:CDS | 50.0% | |
ACCAAGGTAGCCGAGTTGTA+GGG | - | chr1.3:1203098-1203117 | MS.gene64212:intron | 50.0% | |
ACGAACAATCCAACGGTTCG+AGG | - | chr1.3:1203810-1203829 | MS.gene64212:intron | 50.0% | |
ATGTTGCAAACTCCGCATCC+AGG | + | chr1.3:1203985-1204004 | None:intergenic | 50.0% | |
ATTCCATTGCGGGGAATGCT+GGG | - | chr1.3:1204193-1204212 | MS.gene64212:intron | 50.0% | |
CAAGAGTTGTCACGTTGTGG+AGG | + | chr1.3:1202883-1202902 | None:intergenic | 50.0% | |
CATCAAGCTGTTCGACATGC+AGG | - | chr1.3:1201349-1201368 | MS.gene64212:intron | 50.0% | |
CTTCTCCAACCGAATTGTCG+TGG | + | chr1.3:1204068-1204087 | None:intergenic | 50.0% | |
GCGGAGTTTGCAACATCATC+CGG | - | chr1.3:1203989-1204008 | MS.gene64212:CDS | 50.0% | |
GGAGAGAGAAAAGGGAAGAG+AGG | - | chr1.3:1201997-1202016 | MS.gene64212:intron | 50.0% | |
GTTTGCAACATCATCCGGCA+CGG | - | chr1.3:1203994-1204013 | MS.gene64212:CDS | 50.0% | |
TCACTTTCCCGGCAATTACG+CGG | + | chr1.3:1204116-1204135 | None:intergenic | 50.0% | |
TCGTTGTGATCAGTGTGGAG+AGG | - | chr1.3:1201297-1201316 | MS.gene64212:intron | 50.0% | |
TCTGGGAAATCATCCAACGG+TGG | - | chr1.3:1200490-1200509 | MS.gene64212:CDS | 50.0% | |
TGTGTAGTTTCCTCCACCGT+TGG | + | chr1.3:1200506-1200525 | None:intergenic | 50.0% | |
! | ACACCGGGGATTTTTCTTGG+TGG | + | chr1.3:1203872-1203891 | None:intergenic | 50.0% |
!! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1.3:1203858-1203877 | None:intergenic | 50.0% |
AGTTGTCACGTTGTGGAGGC+AGG | + | chr1.3:1202879-1202898 | None:intergenic | 55.0% | |
ATTTCCTCCTCCGACACCAC+CGG | + | chr1.3:1204162-1204181 | None:intergenic | 55.0% | |
CACACGATAGCGATGTGCTG+TGG | + | chr1.3:1203924-1203943 | None:intergenic | 55.0% | |
CTCTGCATTCCTCGAACCGT+TGG | + | chr1.3:1203822-1203841 | None:intergenic | 55.0% | |
CTTGTGTGCCGCGTAATTGC+CGG | - | chr1.3:1204105-1204124 | MS.gene64212:CDS | 55.0% | |
GAGGAGTTCGTTGCCATCTG+CGG | + | chr1.3:1203896-1203915 | None:intergenic | 55.0% | |
GATTCCATTGCGGGGAATGC+TGG | - | chr1.3:1204192-1204211 | MS.gene64212:intron | 55.0% | |
GGCCCTACCACTACTAGCAT+TGG | + | chr1.3:1204046-1204065 | None:intergenic | 55.0% | |
GGGAAATCATCCAACGGTGG+AGG | - | chr1.3:1200493-1200512 | MS.gene64212:CDS | 55.0% | |
GTAGCCGAGTTGTAGGGACT+AGG | - | chr1.3:1203104-1203123 | MS.gene64212:intron | 55.0% | |
GTTCGAGGAATGCAGAGACG+CGG | - | chr1.3:1203825-1203844 | MS.gene64212:intron | 55.0% | |
TCCCTACAACTCGGCTACCT+TGG | + | chr1.3:1203102-1203121 | None:intergenic | 55.0% | |
TGGTAGGGCCCACGACAATT+CGG | - | chr1.3:1204056-1204075 | MS.gene64212:CDS | 55.0% | |
TTGTGTGCCGCGTAATTGCC+GGG | - | chr1.3:1204106-1204125 | MS.gene64212:CDS | 55.0% | |
! | GGCACACCGGGGATTTTTCT+TGG | + | chr1.3:1203875-1203894 | None:intergenic | 55.0% |
!! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1.3:1203857-1203876 | None:intergenic | 55.0% |
ACTCCCAGCATTCCCCGCAA+TGG | + | chr1.3:1204199-1204218 | None:intergenic | 60.0% | |
AGGGCCCACGACAATTCGGT+TGG | - | chr1.3:1204060-1204079 | MS.gene64212:CDS | 60.0% | |
AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1.3:1203684-1203703 | MS.gene64212:intron | 60.0% | |
CTTTGCGCTGTGCCTGGATG+CGG | - | chr1.3:1203970-1203989 | MS.gene64212:CDS | 60.0% | |
GAGCTGGGTCCAGAGGATTC+AGG | - | chr1.3:1203691-1203710 | MS.gene64212:intron | 60.0% | |
GCATCCAGGCACAGCGCAAA+GGG | + | chr1.3:1203971-1203990 | None:intergenic | 60.0% | |
GCGATGTGCTGTGGAAACGG+AGG | + | chr1.3:1203915-1203934 | None:intergenic | 60.0% | |
! | GGTGGTGTCGGAGGAGGAAA+TGG | - | chr1.3:1204161-1204180 | MS.gene64212:intron | 60.0% |
!! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1.3:1203937-1203956 | MS.gene64212:CDS | 60.0% |
AATCCCCGGTGTGCCGCAGA+TGG | - | chr1.3:1203880-1203899 | MS.gene64212:intron | 65.0% | |
AGGCACAGCGCAAAGGGTGG+AGG | + | chr1.3:1203965-1203984 | None:intergenic | 65.0% | |
CGCATCCAGGCACAGCGCAA+AGG | + | chr1.3:1203972-1203991 | None:intergenic | 65.0% | |
CGCCACGCGCTTCACTTTCC+CGG | + | chr1.3:1204127-1204146 | None:intergenic | 65.0% | |
CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1.3:1204125-1204144 | MS.gene64212:CDS | 65.0% | |
CGTTGCCATCTGCGGCACAC+CGG | + | chr1.3:1203888-1203907 | None:intergenic | 65.0% | |
GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1.3:1204128-1204147 | MS.gene64212:CDS | 65.0% | |
GTTGCCATCTGCGGCACACC+GGG | + | chr1.3:1203887-1203906 | None:intergenic | 65.0% | |
TCCACCCTTTGCGCTGTGCC+TGG | - | chr1.3:1203964-1203983 | MS.gene64212:CDS | 65.0% | |
TCCAGGCACAGCGCAAAGGG+TGG | + | chr1.3:1203968-1203987 | None:intergenic | 65.0% | |
TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1.3:1204122-1204141 | MS.gene64212:CDS | 65.0% | |
TTGCCATCTGCGGCACACCG+GGG | + | chr1.3:1203886-1203905 | None:intergenic | 65.0% | |
! | GGAAGGTGCACCGGTGGTGT+CGG | - | chr1.3:1204149-1204168 | MS.gene64212:CDS | 65.0% |
! | AGGTGCACCGGTGGTGTCGG+AGG | - | chr1.3:1204152-1204171 | MS.gene64212:CDS | 70.0% |
! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1.3:1204140-1204159 | MS.gene64212:CDS | 70.0% |
! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1.3:1204132-1204151 | MS.gene64212:CDS | 70.0% |
! | TGCACCGGTGGTGTCGGAGG+AGG | - | chr1.3:1204155-1204174 | MS.gene64212:CDS | 70.0% |
! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1.3:1204143-1204162 | MS.gene64212:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 1200222 | 1204305 | 1200222 | ID=MS.gene64212 |
chr1.3 | mRNA | 1200222 | 1204305 | 1200222 | ID=MS.gene64212.t1;Parent=MS.gene64212 |
chr1.3 | exon | 1204262 | 1204305 | 1204262 | ID=MS.gene64212.t1.exon1;Parent=MS.gene64212.t1 |
chr1.3 | CDS | 1204262 | 1204305 | 1204262 | ID=cds.MS.gene64212.t1;Parent=MS.gene64212.t1 |
chr1.3 | exon | 1203919 | 1204179 | 1203919 | ID=MS.gene64212.t1.exon2;Parent=MS.gene64212.t1 |
chr1.3 | CDS | 1203919 | 1204179 | 1203919 | ID=cds.MS.gene64212.t1;Parent=MS.gene64212.t1 |
chr1.3 | exon | 1203157 | 1203257 | 1203157 | ID=MS.gene64212.t1.exon3;Parent=MS.gene64212.t1 |
chr1.3 | CDS | 1203157 | 1203257 | 1203157 | ID=cds.MS.gene64212.t1;Parent=MS.gene64212.t1 |
chr1.3 | exon | 1200222 | 1200841 | 1200222 | ID=MS.gene64212.t1.exon4;Parent=MS.gene64212.t1 |
chr1.3 | CDS | 1200222 | 1200841 | 1200222 | ID=cds.MS.gene64212.t1;Parent=MS.gene64212.t1 |
Gene Sequence |
Protein sequence |