AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64231

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64231.t1 MTR_2g075680 92.834 307 19 3 1 305 1 306 0.0 540
MS.gene64231.t1 MTR_2g075690 76.206 311 57 4 1 305 1 300 3.68e-162 453
MS.gene64231.t1 MTR_2g075700 74.754 305 71 5 1 305 1 299 3.61e-150 423
MS.gene64231.t1 MTR_7g073430 37.500 256 127 6 12 267 10 232 3.55e-48 162
MS.gene64231.t1 MTR_7g073380 38.559 236 116 5 12 245 11 219 2.55e-47 160
MS.gene64231.t1 MTR_2g075750 48.538 171 81 3 134 304 13 176 4.89e-46 154
MS.gene64231.t1 MTR_2g075610 46.893 177 86 4 131 304 11 182 8.35e-46 153
MS.gene64231.t1 MTR_0002s1250 39.004 241 107 9 10 245 3 208 4.23e-41 144
MS.gene64231.t1 MTR_8g005750 38.655 238 96 7 14 245 4 197 4.32e-40 141
MS.gene64231.t1 MTR_8g032510 38.655 238 116 7 11 245 4 214 5.78e-38 136
MS.gene64231.t1 MTR_3g093830 39.216 153 86 3 62 214 47 192 1.19e-27 109
MS.gene64231.t1 MTR_5g067700 39.831 118 68 2 132 249 90 204 1.92e-23 96.7
MS.gene64231.t1 MTR_7g117200 45.361 97 44 2 132 219 92 188 6.35e-20 88.6
MS.gene64231.t1 MTR_8g099350 29.858 211 111 7 10 208 6 191 2.06e-19 87.8
MS.gene64231.t1 MTR_3g090860 55.738 61 27 0 148 208 132 192 4.99e-18 83.6
MS.gene64231.t1 MTR_8g027860 43.158 95 45 2 125 211 105 198 1.32e-17 82.4
MS.gene64231.t1 MTR_7g079010 40.952 105 51 4 105 206 99 195 4.77e-17 78.6
MS.gene64231.t1 MTR_5g067680 53.968 63 29 0 149 211 202 264 6.04e-17 80.5
MS.gene64231.t1 MTR_7g028415 47.561 82 39 2 142 223 86 163 5.58e-16 74.7
MS.gene64231.t1 MTR_7g028710 47.561 82 39 2 142 223 86 163 5.58e-16 74.7
MS.gene64231.t1 MTR_2g075640 41.379 116 53 6 8 121 6 108 4.72e-15 70.5
MS.gene64231.t1 MTR_2g075730 40.517 116 54 6 8 121 6 108 1.34e-14 69.3
MS.gene64231.t1 MTR_7g109800 39.773 88 50 1 120 207 116 200 1.84e-14 72.8
MS.gene64231.t1 MTR_8g092140 50.000 60 27 1 147 206 158 214 2.60e-14 71.2
MS.gene64231.t1 MTR_1g086790 40.909 88 49 1 120 207 129 213 3.66e-14 72.4
MS.gene64231.t1 MTR_3g095080 49.180 61 28 1 147 207 166 223 4.10e-14 70.9
MS.gene64231.t1 MTR_3g095080 49.180 61 28 1 147 207 142 199 4.94e-14 70.5
MS.gene64231.t1 MTR_8g007270 40.000 90 48 2 120 206 122 208 4.98e-14 70.5
MS.gene64231.t1 MTR_5g073620 35.537 121 63 3 107 222 631 741 3.41e-13 70.5
MS.gene64231.t1 MTR_4g122530 50.847 59 26 1 148 206 207 262 3.69e-13 69.7
MS.gene64231.t1 MTR_5g091390 52.542 59 25 1 148 206 156 211 4.05e-13 68.9
MS.gene64231.t1 MTR_5g043880 39.326 89 48 2 148 233 123 208 5.98e-13 68.2
MS.gene64231.t1 MTR_2g033820 43.210 81 43 1 148 228 202 279 8.31e-13 68.6
MS.gene64231.t1 MTR_7g100510 48.387 62 29 1 145 206 357 415 9.78e-13 68.6
MS.gene64231.t1 MTR_3g104750 35.185 108 59 3 111 212 62 164 1.22e-12 65.1
MS.gene64231.t1 MTR_5g042920 50.000 60 27 1 147 206 318 374 1.44e-12 68.2
MS.gene64231.t1 MTR_4g094588 50.847 59 26 1 148 206 177 232 1.76e-12 67.4
MS.gene64231.t1 MTR_8g096730 45.000 60 30 1 147 206 68 124 1.84e-12 64.3
MS.gene64231.t1 MTR_7g011820 48.333 60 28 1 147 206 408 464 1.84e-12 67.8
MS.gene64231.t1 MTR_7g011820 45.902 61 29 2 146 206 225 281 5.33e-11 63.5
MS.gene64231.t1 MTR_5g085600 74.419 43 10 1 86 128 11 52 1.97e-12 61.6
MS.gene64231.t1 MTR_4g082580 48.333 60 28 1 147 206 276 332 3.43e-12 66.6
MS.gene64231.t1 MTR_1g009613 34.286 105 62 4 104 206 218 317 4.54e-12 66.2
MS.gene64231.t1 MTR_4g127040 37.349 83 50 1 124 206 220 300 6.92e-12 65.5
MS.gene64231.t1 MTR_8g028565 37.634 93 51 2 121 213 132 217 1.22e-11 64.7
MS.gene64231.t1 MTR_3g056100 46.667 60 29 1 147 206 400 456 1.38e-11 65.5
MS.gene64231.t1 MTR_3g056100 46.667 60 29 1 147 206 413 469 1.50e-11 65.1
MS.gene64231.t1 MTR_5g094430 43.056 72 33 2 147 213 362 430 1.61e-11 65.1
MS.gene64231.t1 MTR_3g056100 46.667 60 29 1 147 206 256 312 1.99e-11 64.7
MS.gene64231.t1 MTR_3g056100 46.667 60 29 1 147 206 269 325 2.21e-11 64.7
MS.gene64231.t1 MTR_5g094430 43.056 72 33 2 147 213 228 296 2.36e-11 64.3
MS.gene64231.t1 MTR_5g094430 43.056 72 33 2 147 213 250 318 2.39e-11 64.3
MS.gene64231.t1 MTR_1g015140 43.939 66 34 1 142 207 95 157 4.30e-11 60.8
MS.gene64231.t1 MTR_7g062220 51.667 60 26 1 147 206 122 178 5.40e-11 62.8
MS.gene64231.t1 MTR_5g074400 48.333 60 28 1 147 206 418 474 5.44e-11 63.5
MS.gene64231.t1 MTR_7g110720 41.463 82 38 2 125 206 173 244 7.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64231.t1 AT3G56400 32.020 203 113 4 7 208 1 179 8.24e-25 101
MS.gene64231.t1 AT5G22570 37.107 159 79 4 64 222 42 179 1.31e-24 100
MS.gene64231.t1 AT5G01900 32.487 197 101 4 13 209 6 170 2.92e-23 96.7
MS.gene64231.t1 AT1G66560 60.294 68 26 1 149 215 103 170 3.46e-22 93.6
MS.gene64231.t1 AT1G66600 42.857 112 48 3 148 243 102 213 9.88e-22 92.0
MS.gene64231.t1 AT1G66550 55.882 68 29 1 149 215 103 170 1.67e-20 89.0
MS.gene64231.t1 AT1G66550 55.882 68 29 1 149 215 108 175 2.32e-20 88.6
MS.gene64231.t1 AT2G46400 28.870 239 126 7 13 251 5 199 3.37e-20 89.0
MS.gene64231.t1 AT4G11070 29.936 157 101 2 61 208 44 200 2.60e-19 86.7
MS.gene64231.t1 AT1G80590 41.379 87 51 0 128 214 64 150 4.78e-19 84.7
MS.gene64231.t1 AT2G40750 31.068 206 130 6 13 210 12 213 1.70e-18 85.1
MS.gene64231.t1 AT4G11070 29.648 199 105 4 10 208 5 168 3.82e-18 83.2
MS.gene64231.t1 AT4G23810 28.856 201 111 5 89 260 91 288 1.33e-17 82.0
MS.gene64231.t1 AT5G24110 34.211 152 74 3 63 208 41 172 7.63e-17 79.7
MS.gene64231.t1 AT2G40740 52.381 63 30 0 149 211 173 235 1.41e-16 79.0
MS.gene64231.t1 AT2G40740 52.381 63 30 0 149 211 182 244 2.02e-16 78.6
MS.gene64231.t1 AT2G46130 53.030 66 26 2 142 206 23 84 8.86e-15 69.7
MS.gene64231.t1 AT4G39410 42.553 94 48 3 125 215 196 286 2.20e-14 72.8
MS.gene64231.t1 AT4G18170 41.379 87 48 1 120 206 143 226 3.21e-14 72.4
MS.gene64231.t1 AT5G49520 53.333 60 25 1 148 207 220 276 4.33e-14 72.4
MS.gene64231.t1 AT2G44745 43.902 82 40 2 128 206 121 199 6.53e-14 70.1
MS.gene64231.t1 AT1G64000 51.667 60 26 1 147 206 112 168 8.18e-14 69.3
MS.gene64231.t1 AT5G41570 38.636 88 48 2 122 206 68 152 1.61e-13 68.2
MS.gene64231.t1 AT2G37260 50.847 59 26 1 148 206 348 403 1.87e-13 70.9
MS.gene64231.t1 AT2G37260 50.847 59 26 1 148 206 266 321 2.18e-13 70.1
MS.gene64231.t1 AT2G37260 50.847 59 26 1 148 206 268 323 2.25e-13 70.1
MS.gene64231.t1 AT2G47260 39.773 88 50 1 120 207 145 229 2.95e-13 69.7
MS.gene64231.t1 AT1G29860 41.000 100 54 2 109 206 94 190 3.30e-13 68.9
MS.gene64231.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.07e-13 68.6
MS.gene64231.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.07e-13 68.6
MS.gene64231.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.07e-13 68.6
MS.gene64231.t1 AT1G13960 50.000 60 27 1 147 206 407 463 7.65e-13 69.3
MS.gene64231.t1 AT2G03340 50.000 60 27 1 147 206 413 469 1.36e-12 68.6
MS.gene64231.t1 AT1G13960 50.000 60 27 1 147 206 254 310 1.65e-12 67.8
MS.gene64231.t1 AT5G46350 47.692 65 31 1 142 206 176 237 1.98e-12 67.0
MS.gene64231.t1 AT5G13080 49.180 61 28 1 147 207 65 122 2.68e-12 63.9
MS.gene64231.t1 AT2G04880 45.902 61 29 2 146 206 108 164 4.80e-12 66.6
MS.gene64231.t1 AT2G04880 46.667 60 29 1 147 206 281 337 3.34e-11 63.9
MS.gene64231.t1 AT2G04880 45.902 61 29 2 146 206 108 164 5.71e-12 66.6
MS.gene64231.t1 AT2G04880 46.667 60 29 1 147 206 305 361 4.63e-11 63.5
MS.gene64231.t1 AT2G23320 34.188 117 71 2 94 206 181 295 6.30e-12 65.5
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 339 433 7.39e-12 66.2
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 379 473 7.71e-12 66.2
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 307 401 7.99e-12 65.9
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 203 297 9.88e-12 65.5
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 203 297 9.88e-12 65.5
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 203 297 9.88e-12 65.5
MS.gene64231.t1 AT4G26640 40.000 100 49 4 147 240 203 297 9.88e-12 65.5
MS.gene64231.t1 AT3G01970 47.541 61 29 1 147 207 63 120 1.86e-11 61.6
MS.gene64231.t1 AT5G26170 40.278 72 35 2 146 217 110 173 2.20e-11 62.0
MS.gene64231.t1 AT4G26440 50.000 58 25 2 149 206 178 231 4.53e-11 63.9
MS.gene64231.t1 AT2G30590 36.145 83 51 1 124 206 288 368 5.17e-11 63.2
MS.gene64231.t1 AT3G01080 46.154 65 32 1 142 206 337 398 6.49e-11 63.2
MS.gene64231.t1 AT3G01080 46.154 65 32 1 142 206 299 360 8.59e-11 62.8

Find 54 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCAGCAACAATATTTA+AGG 0.169221 2.1:+23954821 None:intergenic
CTTTGGCTTCCAACAAATTA+TGG 0.175004 2.1:-23954978 MS.gene64231:CDS
TTACCATTCAGACTTAAATT+TGG 0.184409 2.1:-23952860 MS.gene64231:CDS
AGATATATACCTGAAATATT+TGG 0.232157 2.1:+23953143 None:intergenic
TAAGATGAAGGAGGAGGATT+TGG 0.258950 2.1:-23954676 MS.gene64231:CDS
TCACAAATGCCAAATATTTC+AGG 0.281113 2.1:-23953152 MS.gene64231:intron
TCAAATATTAGAGAAGTTAA+AGG 0.289246 2.1:-23954873 MS.gene64231:CDS
AAACATCAAAATCGCATAAC+TGG 0.325641 2.1:+23952650 None:intergenic
AATCCTCCTCCTTCATCTTA+TGG 0.329589 2.1:+23954679 None:intergenic
ATAACCATCATCAATCAATT+TGG 0.330019 2.1:+23953203 None:intergenic
TCCAACAAATTATGGCAAAA+AGG 0.332872 2.1:-23954970 MS.gene64231:CDS
TTGTACCGGACTACATATTA+TGG 0.352265 2.1:-23952904 MS.gene64231:CDS
AAAGTCATCAGAGGAGAAAA+TGG 0.362727 2.1:+23952834 None:intergenic
GATTCTCCGGTGAGAACAAT+TGG 0.405307 2.1:+23952674 None:intergenic
TATAGGAACCGCCACATCAT+TGG 0.416491 2.1:+23954734 None:intergenic
TCTTCAGCAACAATATTTAA+GGG 0.422613 2.1:+23954822 None:intergenic
AGTAATCAAGAATATCCGTT+TGG 0.452427 2.1:-23952778 MS.gene64231:CDS
ATATAATGGAGAATATGCTT+TGG 0.459020 2.1:-23954995 None:intergenic
CAAATATTAGAGAAGTTAAA+GGG 0.464900 2.1:-23954872 MS.gene64231:CDS
ATTCCAAATTTAAGTCTGAA+TGG 0.467467 2.1:+23952857 None:intergenic
GCCTCCAAATTGATTGATGA+TGG 0.475537 2.1:-23953207 MS.gene64231:CDS
AACTAATTGCCATAAGATGA+AGG 0.480574 2.1:-23954688 MS.gene64231:CDS
CCACTTCTTGCATCTACAAA+CGG 0.482853 2.1:-23952739 MS.gene64231:CDS
AAGATGAAGGAGGAGGATTT+GGG 0.487137 2.1:-23954675 MS.gene64231:CDS
ATGTATGCAGGAGCTACTAT+AGG 0.489699 2.1:-23952996 MS.gene64231:intron
TCATGATGTATCTCTTCCTT+AGG 0.501188 2.1:+23952712 None:intergenic
TCGCATAACTGGAGATTCTC+CGG 0.520000 2.1:+23952661 None:intergenic
AAAAGAACCCTTCGTTGTAC+CGG 0.521119 2.1:-23952918 MS.gene64231:CDS
ATCTACAAACGGAGATCCTA+AGG 0.526669 2.1:-23952728 MS.gene64231:CDS
TAGGTCAAGTGCACCAACTT+GGG 0.530587 2.1:-23953238 MS.gene64231:CDS
TTAGGTCAAGTGCACCAACT+TGG 0.536533 2.1:-23953239 MS.gene64231:intron
ACCATCATCAATCAATTTGG+AGG 0.542680 2.1:+23953206 None:intergenic
GATGACCATAATATGTAGTC+CGG 0.554702 2.1:+23952899 None:intergenic
GGTTATACATGGAGAAAGTA+CGG 0.556459 2.1:-23953186 MS.gene64231:CDS
ATGCAAGAAGTGGCAATGGT+GGG 0.559885 2.1:+23952749 None:intergenic
AATGGTGGGGACTGTCCAAA+CGG 0.568226 2.1:+23952763 None:intergenic
ATGTAGTCCGGTACAACGAA+GGG 0.569798 2.1:+23952911 None:intergenic
TGATTGATGATGGTTATACA+TGG 0.570958 2.1:-23953197 MS.gene64231:CDS
TTGCCATAAGATGAAGGAGG+AGG 0.573073 2.1:-23954682 MS.gene64231:CDS
TGCACCAACTTGGGAAAAGA+CGG 0.575025 2.1:-23953229 MS.gene64231:CDS
TCAAAACCAATTGTTCTCAC+CGG 0.575943 2.1:-23952680 MS.gene64231:CDS
TGCAAGAAGTGGCAATGGTG+GGG 0.587712 2.1:+23952750 None:intergenic
TAATATAGAAAAGTCATCAG+AGG 0.607514 2.1:+23952825 None:intergenic
ATGAAGGAGGAGGATTTGGG+TGG 0.616222 2.1:-23954672 MS.gene64231:CDS
CCGTTTGTAGATGCAAGAAG+TGG 0.617465 2.1:+23952739 None:intergenic
TGCTGAAGATCTTGTGCGTG+AGG 0.635228 2.1:-23954808 MS.gene64231:CDS
GCTTATGAGAGGACGTGACA+TGG 0.640238 2.1:-23954934 MS.gene64231:CDS
TATGTAGTCCGGTACAACGA+AGG 0.640543 2.1:+23952910 None:intergenic
GATGCAAGAAGTGGCAATGG+TGG 0.642924 2.1:+23952748 None:intergenic
TGGTAAAGACTCCAATGATG+TGG 0.645157 2.1:-23954745 MS.gene64231:CDS
ATGGAAGATGAGCTTATGAG+AGG 0.648590 2.1:-23954945 MS.gene64231:CDS
GTAGATGCAAGAAGTGGCAA+TGG 0.654729 2.1:+23952745 None:intergenic
TAAAGACTCCAATGATGTGG+CGG 0.681692 2.1:-23954742 MS.gene64231:CDS
TAATTGCCATAAGATGAAGG+AGG 0.755735 2.1:-23954685 MS.gene64231:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+CGG + chr2.1:23953302-23953283 None:intergenic 0.0%
!!! TATTTTTATAATATCAAACA+AGG - chr2.1:23953098-23953117 MS.gene64231:intron 10.0%
!! ATAAAATTTAATATGTATGC+AGG - chr2.1:23954579-23954598 MS.gene64231:intron 15.0%
!! ATATGAAAATTAATATAGTG+AGG + chr2.1:23953072-23953091 None:intergenic 15.0%
!! ATCAATCTTATAACTTAATT+TGG + chr2.1:23953197-23953216 None:intergenic 15.0%
!! TTAACTTTGTAAGTATAAAA+TGG + chr2.1:23953967-23953986 None:intergenic 15.0%
!! TTATATTTACGTAGTATAAT+TGG - chr2.1:23954287-23954306 MS.gene64231:intron 15.0%
!!! ATATAATTTTTTTTCAGTCT+AGG + chr2.1:23954076-23954095 None:intergenic 15.0%
!!! TATAATTTTTTTTCAGTCTA+GGG + chr2.1:23954075-23954094 None:intergenic 15.0%
!! AAAATAATTCATGCAATCAT+GGG - chr2.1:23953806-23953825 MS.gene64231:intron 20.0%
!! AGATATATACCTGAAATATT+TGG + chr2.1:23954447-23954466 None:intergenic 20.0%
!! CAAATATTAGAGAAGTTAAA+GGG - chr2.1:23952715-23952734 MS.gene64231:CDS 20.0%
!! CAAATTAGAATGTTTGTTTA+GGG - chr2.1:23953537-23953556 MS.gene64231:intron 20.0%
!! GAAAAATCTTTAACAGTTAT+AGG + chr2.1:23952873-23952892 None:intergenic 20.0%
!! TAAACAAACATTCTAATTTG+AGG + chr2.1:23953537-23953556 None:intergenic 20.0%
!! TCAAATATTAGAGAAGTTAA+AGG - chr2.1:23952714-23952733 MS.gene64231:CDS 20.0%
!! TCAAATTAGAATGTTTGTTT+AGG - chr2.1:23953536-23953555 MS.gene64231:intron 20.0%
!! TTGTAAGTATAAAATGGTTT+GGG + chr2.1:23953961-23953980 None:intergenic 20.0%
!! TTTGTAAGTATAAAATGGTT+TGG + chr2.1:23953962-23953981 None:intergenic 20.0%
!!! ATAATTTTTTTTCAGTCTAG+GGG + chr2.1:23954074-23954093 None:intergenic 20.0%
!!! GATATTTTTGTCTTCATATT+AGG - chr2.1:23954330-23954349 MS.gene64231:intron 20.0%
!!! GTTTAAAACTTTAGAACATT+TGG + chr2.1:23953134-23953153 None:intergenic 20.0%
! ATAAAAACCCTAAACAAACA+TGG + chr2.1:23953547-23953566 None:intergenic 25.0%
! ATAACCATCATCAATCAATT+TGG + chr2.1:23954387-23954406 None:intergenic 25.0%
! ATATGATCATCATTACTCAA+TGG - chr2.1:23954203-23954222 MS.gene64231:intron 25.0%
! ATCTTCAGCAACAATATTTA+AGG + chr2.1:23952769-23952788 None:intergenic 25.0%
! ATGATGATCATATATATGTC+TGG + chr2.1:23954196-23954215 None:intergenic 25.0%
! ATTCCAAATTTAAGTCTGAA+TGG + chr2.1:23954733-23954752 None:intergenic 25.0%
! ATTTGAATGTTACAGATTGA+TGG + chr2.1:23954544-23954563 None:intergenic 25.0%
! GAAAATAATTCATGCAATCA+TGG - chr2.1:23953805-23953824 MS.gene64231:intron 25.0%
! GAAACAAGTCAAATACTTAT+AGG + chr2.1:23953034-23953053 None:intergenic 25.0%
! TAATATAGAAAAGTCATCAG+AGG + chr2.1:23954765-23954784 None:intergenic 25.0%
! TAGGAACATAGTATAAAACA+TGG + chr2.1:23953015-23953034 None:intergenic 25.0%
! TCTTCAGCAACAATATTTAA+GGG + chr2.1:23952768-23952787 None:intergenic 25.0%
! TTACCATTCAGACTTAAATT+TGG - chr2.1:23954727-23954746 MS.gene64231:CDS 25.0%
! TTGAGATTTAATTAGAGCTA+TGG + chr2.1:23954000-23954019 None:intergenic 25.0%
! TTTACTTCCATGTTTGTTTA+GGG - chr2.1:23953476-23953495 MS.gene64231:intron 25.0%
!! TTTTACTTCCATGTTTGTTT+AGG - chr2.1:23953475-23953494 MS.gene64231:intron 25.0%
!!! AAGTATTTGACTTGTTTCAA+AGG - chr2.1:23953036-23953055 MS.gene64231:intron 25.0%
!!! TCGTTAACTTGTCTTTTTAA+GGG + chr2.1:23954111-23954130 None:intergenic 25.0%
!!! TTCGTTAACTTGTCTTTTTA+AGG + chr2.1:23954112-23954131 None:intergenic 25.0%
AAACATCAAAATCGCATAAC+TGG + chr2.1:23954940-23954959 None:intergenic 30.0%
AAATTATGGCAAAAAGGCAA+TGG - chr2.1:23952623-23952642 MS.gene64231:CDS 30.0%
AACTAATTGCCATAAGATGA+AGG - chr2.1:23952899-23952918 MS.gene64231:CDS 30.0%
ACAAAAACCCTAAACAAACA+TGG + chr2.1:23953486-23953505 None:intergenic 30.0%
ACAAACATTCTAATTTGAGG+TGG + chr2.1:23953534-23953553 None:intergenic 30.0%
AGTAATCAAGAATATCCGTT+TGG - chr2.1:23954809-23954828 MS.gene64231:CDS 30.0%
ATGATCATATATATGTCTGG+AGG + chr2.1:23954193-23954212 None:intergenic 30.0%
TCAACTTTCAATCTCAAGTT+TGG - chr2.1:23953912-23953931 MS.gene64231:intron 30.0%
TCACAAATGCCAAATATTTC+AGG - chr2.1:23954435-23954454 MS.gene64231:intron 30.0%
TCCAACAAATTATGGCAAAA+AGG - chr2.1:23952617-23952636 MS.gene64231:CDS 30.0%
TGGATAATTCATGTGAGATT+GGG - chr2.1:23953932-23953951 MS.gene64231:intron 30.0%
TTGGATAATTCATGTGAGAT+TGG - chr2.1:23953931-23953950 MS.gene64231:intron 30.0%
!! TGATTGATGATGGTTATACA+TGG - chr2.1:23954390-23954409 MS.gene64231:intron 30.0%
AAAGTCATCAGAGGAGAAAA+TGG + chr2.1:23954756-23954775 None:intergenic 35.0%
AAGAAGGAAGAAAAACCAGT+TGG + chr2.1:23953438-23953457 None:intergenic 35.0%
ACCATCATCAATCAATTTGG+AGG + chr2.1:23954384-23954403 None:intergenic 35.0%
GATGACCATAATATGTAGTC+CGG + chr2.1:23954691-23954710 None:intergenic 35.0%
GGTTATACATGGAGAAAGTA+CGG - chr2.1:23954401-23954420 MS.gene64231:intron 35.0%
TAATTGCCATAAGATGAAGG+AGG - chr2.1:23952902-23952921 MS.gene64231:CDS 35.0%
TCAAAACCAATTGTTCTCAC+CGG - chr2.1:23954907-23954926 MS.gene64231:CDS 35.0%
TCATGATGTATCTCTTCCTT+AGG + chr2.1:23954878-23954897 None:intergenic 35.0%
TTGTACCGGACTACATATTA+TGG - chr2.1:23954683-23954702 MS.gene64231:CDS 35.0%
! CTTTGGCTTCCAACAAATTA+TGG - chr2.1:23952609-23952628 MS.gene64231:CDS 35.0%
! GGTTTTTCTTCCTTCTTTGT+CGG - chr2.1:23953441-23953460 MS.gene64231:intron 35.0%
! GTTTTTCTTCCTTCTTTGTC+GGG - chr2.1:23953442-23953461 MS.gene64231:intron 35.0%
!! GCCTTTTTGCCATAATTTGT+TGG + chr2.1:23952621-23952640 None:intergenic 35.0%
!! TTTTAATTCACAGCACAGCT+AGG - chr2.1:23954167-23954186 MS.gene64231:intron 35.0%
!!! ACACTTTTGCTGTTGAACAA+TGG - chr2.1:23952822-23952841 MS.gene64231:CDS 35.0%
!!! ATTTTTTTTCAGTCTAGGGG+AGG + chr2.1:23954071-23954090 None:intergenic 35.0%
!!! TTTTTTTTCAGTCTAGGGGA+GGG + chr2.1:23954070-23954089 None:intergenic 35.0%
AAAAGAACCCTTCGTTGTAC+CGG - chr2.1:23954669-23954688 MS.gene64231:CDS 40.0%
AAGATGAAGGAGGAGGATTT+GGG - chr2.1:23952912-23952931 MS.gene64231:CDS 40.0%
AAGGAAGAAAAACCAGTTGG+CGG + chr2.1:23953435-23953454 None:intergenic 40.0%
AATCCTCCTCCTTCATCTTA+TGG + chr2.1:23952911-23952930 None:intergenic 40.0%
ATCTACAAACGGAGATCCTA+AGG - chr2.1:23954859-23954878 MS.gene64231:CDS 40.0%
ATGGAAGATGAGCTTATGAG+AGG - chr2.1:23952642-23952661 MS.gene64231:CDS 40.0%
ATGTATGCAGGAGCTACTAT+AGG - chr2.1:23954591-23954610 MS.gene64231:intron 40.0%
CCACTTCTTGCATCTACAAA+CGG - chr2.1:23954848-23954867 MS.gene64231:CDS 40.0%
GACAATTTACCCGACAAAGA+AGG + chr2.1:23953454-23953473 None:intergenic 40.0%
GCCTCCAAATTGATTGATGA+TGG - chr2.1:23954380-23954399 MS.gene64231:intron 40.0%
TAAAGACTCCAATGATGTGG+CGG - chr2.1:23952845-23952864 MS.gene64231:CDS 40.0%
TAAGATGAAGGAGGAGGATT+TGG - chr2.1:23952911-23952930 MS.gene64231:CDS 40.0%
TGGTAAAGACTCCAATGATG+TGG - chr2.1:23952842-23952861 MS.gene64231:CDS 40.0%
!! GTGGTTTTTGTTTCTCTCTC+TGG + chr2.1:23953515-23953534 None:intergenic 40.0%
!!! GGTGAGAACAATTGGTTTTG+AGG + chr2.1:23954908-23954927 None:intergenic 40.0%
!!! GTTCGACACTTTCGAGTTTT+TGG + chr2.1:23952970-23952989 None:intergenic 40.0%
!!! TTTTTTTCAGTCTAGGGGAG+GGG + chr2.1:23954069-23954088 None:intergenic 40.0%
ATGCAAGAAGTGGCAATGGT+GGG + chr2.1:23954841-23954860 None:intergenic 45.0%
ATGTAGTCCGGTACAACGAA+GGG + chr2.1:23954679-23954698 None:intergenic 45.0%
CCGTTTGTAGATGCAAGAAG+TGG + chr2.1:23954851-23954870 None:intergenic 45.0%
GAGGAGAGGGAGAAAAATGA+AGG + chr2.1:23953413-23953432 None:intergenic 45.0%
GATTCTCCGGTGAGAACAAT+TGG + chr2.1:23954916-23954935 None:intergenic 45.0%
GTAGATGCAAGAAGTGGCAA+TGG + chr2.1:23954845-23954864 None:intergenic 45.0%
TAGGTCAAGTGCACCAACTT+GGG - chr2.1:23954349-23954368 MS.gene64231:intron 45.0%
TATAGGAACCGCCACATCAT+TGG + chr2.1:23952856-23952875 None:intergenic 45.0%
TATGTAGTCCGGTACAACGA+AGG + chr2.1:23954680-23954699 None:intergenic 45.0%
TCGCATAACTGGAGATTCTC+CGG + chr2.1:23954929-23954948 None:intergenic 45.0%
TGCACCAACTTGGGAAAAGA+CGG - chr2.1:23954358-23954377 MS.gene64231:intron 45.0%
TTAGGTCAAGTGCACCAACT+TGG - chr2.1:23954348-23954367 MS.gene64231:intron 45.0%
TTGCCATAAGATGAAGGAGG+AGG - chr2.1:23952905-23952924 MS.gene64231:CDS 45.0%
!!! TTTTTTCAGTCTAGGGGAGG+GGG + chr2.1:23954068-23954087 None:intergenic 45.0%
!!! GAATTTATTTAATATTTTAT+AGG + chr2.1:23954030-23954049 None:intergenic 5.0%
ATGAAGGAGGAGGATTTGGG+TGG - chr2.1:23952915-23952934 MS.gene64231:CDS 50.0%
GAAGAAAAACCAGTTGGCGG+AGG + chr2.1:23953432-23953451 None:intergenic 50.0%
GATGCAAGAAGTGGCAATGG+TGG + chr2.1:23954842-23954861 None:intergenic 50.0%
GCTTATGAGAGGACGTGACA+TGG - chr2.1:23952653-23952672 MS.gene64231:CDS 50.0%
TGCAAGAAGTGGCAATGGTG+GGG + chr2.1:23954840-23954859 None:intergenic 50.0%
TGCTGAAGATCTTGTGCGTG+AGG - chr2.1:23952779-23952798 MS.gene64231:CDS 50.0%
! AATGGTGGGGACTGTCCAAA+CGG + chr2.1:23954827-23954846 None:intergenic 50.0%
AAAACCAGTTGGCGGAGGAG+AGG + chr2.1:23953427-23953446 None:intergenic 55.0%
AAACCAGTTGGCGGAGGAGA+GGG + chr2.1:23953426-23953445 None:intergenic 55.0%
! GAGGCCGTCTTTTCCCAAGT+TGG + chr2.1:23954365-23954384 None:intergenic 55.0%
CAGTCTAGGGGAGGGGGATT+TGG + chr2.1:23954062-23954081 None:intergenic 60.0%
TCTCCCTCTCCTCCGCCAAC+TGG - chr2.1:23953420-23953439 MS.gene64231:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 23952597 23955012 23952597 ID=MS.gene64231
chr2.1 mRNA 23952597 23955012 23952597 ID=MS.gene64231.t1;Parent=MS.gene64231
chr2.1 exon 23954612 23955012 23954612 ID=MS.gene64231.t1.exon1;Parent=MS.gene64231.t1
chr2.1 CDS 23954612 23955012 23954612 ID=cds.MS.gene64231.t1;Parent=MS.gene64231.t1
chr2.1 exon 23953153 23953257 23953153 ID=MS.gene64231.t1.exon2;Parent=MS.gene64231.t1
chr2.1 CDS 23953153 23953257 23953153 ID=cds.MS.gene64231.t1;Parent=MS.gene64231.t1
chr2.1 exon 23952597 23953008 23952597 ID=MS.gene64231.t1.exon3;Parent=MS.gene64231.t1
chr2.1 CDS 23952597 23953008 23952597 ID=cds.MS.gene64231.t1;Parent=MS.gene64231.t1
Gene Sequence

>MS.gene64231

ATGGAGAATATGCTTTGGCTTCCAACAAATTATGGCAAAAAGGCAATGGAAGATGAGCTTATGAGAGGACGTGACATGGCAAATCAATTACTTGAAGTACTAACTTTTGATGATAAGTCAAATATTAGAGAAGTTAAAGGGTCAAACACAAATTCATCAAAAGTGTTACCCTTAAATATTGTTGCTGAAGATCTTGTGCGTGAGGTGCTCAAATCATTGACAAACACACTTTTGCTGTTGAACAATGGTAAAGACTCCAATGATGTGGCGGTTCCTATAACTGTTAAAGATTTTTCTTTTTCAACTAATTGCCATAAGATGAAGGAGGAGGATTTGGGTGGAACTTGCAAGAAACTCAAAACTCTCAACACCAAAAACTCGAAAGTGTCGAACAAGAGAAAGTAAGAATCTTTATCCATGTTTTATACTATGTTCCTATAAGTATTTGACTTGTTTCAAAGGTTTTTTTTTTCCTCACTATATTAATTTTCATATTATTTGTATTTTTATAATATCAAACAAGGATTTCTGTTTCCAAATGTTCTAAAGTTTTAAACATGTACAAAACTTAGCTAGATTCAACAATAATCTTGATATCCAAATTAAGTTATAAGATTGATTTTTGAATCAACAGTCAATTATGTCATTAATCTAATAGAAAATTTTGCAATTTCTCTCTTTCTCCGATATATATATATATATATATATATATGTATGTACACACACACACACACACACACACACACACATATATATATATATATACATATACATATATGTGTAAATAATTTAGTACAACTTTATTTTCTAAATCCTTCATTTTTCTCCCTCTCCTCCGCCAACTGGTTTTTCTTCCTTCTTTGTCGGGTAAATTGTCGTTTTACTTCCATGTTTGTTTAGGGTTTTTGTGAAAAACCAGAGAGAGAAACAAAAACCACCTCAAATTAGAATGTTTGTTTAGGGTTTTTATTAATATTCTCACACACACACACACAGATATATATATATACACACACACACACACACATATATGTGTAAATAATTTAGTACAACTTTATTTTCTAAATCCTTCATTTTTCTCCCTCTCCTCCGCCAACTGGTTTTTCTTCCTTCTTTGTCGGGTAAATTGTCGTTTTACTTCCATGTTTGTTTAGGGTTTTTATTAATATTGTTATTTTTCTATAAAAAATTATATTAATTCTTAAAATGAAAATAATTCATGCAATCATGGGCATATATTTACGAAATTGATATAAATATATATATATATATATATATATATATATATATATATTTATTATATCTATATATAATATCAACTTTCAATCTCAAGTTTGGATAATTCATGTGAGATTGGGTAACCCAAACCATTTTATACTTACAAAGTTAATATAAATTGACCATAGCTCTAATTAAATCTCAAACTCTTTCCTATAAAATATTAAATAAATTCTTATATTGTCCAAATCCCCCTCCCCTAGACTGAAAAAAAATTATATACTATGTCTGTACCCTTAAAAAGACAAGTTAACGAAATAAAAAAATGTATGATGCACGTAGATCTTCATAATTTTAATTCACAGCACAGCTAGGCCTCCAGACATATATATGATCATCATTACTCAATGGAAGCATATATCGATCTATTAATATTTTATAAATATTTTCGTCAATTTGATTAATTAAATTATTATATTTACGTAGTATAATTGGATATAAATCATTCATTAACAGATATTTTTGTCTTCATATTAGGTCAAGTGCACCAACTTGGGAAAAGACGGCCTCCAAATTGATTGATGATGGTTATACATGGAGAAAGTACGGTCAAAAAATGATCACAAATGCCAAATATTTCAGGTATATATCTATAGTGCAAATTCAGATAAGAATAAATATTAGTCAACATTATACACTAATGTGATAATTTTAATGTGTTAGATTCCATCAATCTGTAACATTCAAATTAAAAATTAATATAGATAAAATTTAATATGTATGCAGGAGCTACTATAGGTGCACTCACATGAATGATCAACAATGTGAAGCAATCAAACATGTTCAAAGAATACAAAAGAACCCTTCGTTGTACCGGACTACATATTATGGTCATCACACTTGCAAAAGCTCTTACCATTCAGACTTAAATTTGGAATCCATTTTCTCCTCTGATGACTTTTCTATATTACTTAGTTTCGATAACAACATTTCAAGTAATCAAGAATATCCGTTTGGACAGTCCCCACCATTGCCACTTCTTGCATCTACAAACGGAGATCCTAAGGAAGAGATACATCATGATCATTTTCCTCAAAACCAATTGTTCTCACCGGAGAATCTCCAGTTATGCGATTTTGATGTTTATTTTGATTATTTGAGACATGTCACTGAGTCATCATCGAGTGAATCTTTTTAA
Protein sequence

>MS.gene64231.t1

MENMLWLPTNYGKKAMEDELMRGRDMANQLLEVLTFDDKSNIREVKGSNTNSSKVLPLNIVAEDLVREVLKSLTNTLLLLNNGKDSNDVAVPITVKDFSFSTNCHKMKEEDLGGTCKKLKTLNTKNSKVSNKRKSSAPTWEKTASKLIDDGYTWRKYGQKMITNAKYFRSYYRCTHMNDQQCEAIKHVQRIQKNPSLYRTTYYGHHTCKSSYHSDLNLESIFSSDDFSILLSFDNNISSNQEYPFGQSPPLPLLASTNGDPKEEIHHDHFPQNQLFSPENLQLCDFDVYFDYLRHVTESSSSESF