Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64257.t1 | XP_013467138.1 | 82 | 362 | 26 | 3 | 1 | 361 | 1 | 324 | 9.40E-130 | 473.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64257.t1 | Q9M8K2 | 30.5 | 105 | 61 | 3 | 259 | 359 | 228 | 324 | 3.3e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64257.t1 | A0A072VGJ6 | 82.0 | 362 | 26 | 3 | 1 | 361 | 1 | 324 | 6.8e-130 | 473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64257.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64257.t1 | MTR_1g046340 | 60.111 | 361 | 113 | 5 | 2 | 361 | 5 | 335 | 9.23e-133 | 382 |
| MS.gene64257.t1 | MTR_1g046200 | 92.308 | 169 | 12 | 1 | 194 | 361 | 156 | 324 | 1.07e-111 | 328 |
| MS.gene64257.t1 | MTR_1g046320 | 72.941 | 170 | 44 | 1 | 191 | 360 | 166 | 333 | 1.02e-85 | 263 |
| MS.gene64257.t1 | MTR_3g088515 | 46.718 | 259 | 107 | 6 | 2 | 256 | 16 | 247 | 1.72e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64257.t1 | AT3G06160 | 22.817 | 355 | 220 | 7 | 6 | 359 | 23 | 324 | 5.25e-16 | 78.6 |
| MS.gene64257.t1 | AT3G06160 | 22.817 | 355 | 220 | 7 | 6 | 359 | 8 | 309 | 5.87e-16 | 78.2 |
| MS.gene64257.t1 | AT3G06160 | 22.817 | 355 | 220 | 7 | 6 | 359 | 8 | 309 | 5.87e-16 | 78.2 |
| MS.gene64257.t1 | AT3G06160 | 22.817 | 355 | 220 | 7 | 6 | 359 | 8 | 309 | 5.87e-16 | 78.2 |
| MS.gene64257.t1 | AT3G06160 | 23.380 | 355 | 218 | 8 | 6 | 359 | 67 | 368 | 8.16e-16 | 78.2 |
Find 62 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1.3:+27775730 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.292724 | 1.3:-27776858 | MS.gene64257:CDS |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1.3:-27775335 | MS.gene64257:CDS |
| AAAGAATTGTACCAATTCAT+TGG | 0.326483 | 1.3:+27776074 | None:intergenic |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1.3:+27776315 | None:intergenic |
| AGAGAGGCCAAGTACGTATA+TGG | 0.345367 | 1.3:-27775473 | MS.gene64257:CDS |
| TAGAGATGAAAATTCTTTAG+AGG | 0.347027 | 1.3:-27776707 | MS.gene64257:CDS |
| TGCTGCTGTTGATGATATTA+TGG | 0.347297 | 1.3:-27776473 | MS.gene64257:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1.3:-27776371 | MS.gene64257:CDS |
| GCAATAAAGTGTGGATTTCC+CGG | 0.353942 | 1.3:+27776117 | None:intergenic |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.3:+27776871 | None:intergenic |
| TGCTGAAATGTATATTCAAC+CGG | 0.363963 | 1.3:-27776136 | MS.gene64257:CDS |
| ATGGAACAATCGAAATGTTA+AGG | 0.368271 | 1.3:-27775350 | MS.gene64257:CDS |
| TTGTACCAATTCATTGGGTC+TGG | 0.396197 | 1.3:+27776080 | None:intergenic |
| GGAACTTGATGCGTTCAAAA+AGG | 0.399191 | 1.3:-27776837 | MS.gene64257:CDS |
| ATATTGAAAACAACGTATTC+AGG | 0.401283 | 1.3:-27776660 | MS.gene64257:CDS |
| CTCTTCGTCTACGATCTCTT+AGG | 0.403586 | 1.3:+27776794 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.3:+27776872 | None:intergenic |
| TCATTCCAGACCCAATGAAT+TGG | 0.429879 | 1.3:-27776085 | MS.gene64257:intron |
| AAGAATTGTACCAATTCATT+GGG | 0.434349 | 1.3:+27776075 | None:intergenic |
| ATATGTGTTGTACTTATTTG+TGG | 0.442759 | 1.3:+27775501 | None:intergenic |
| CATCTCTCCATATACGTACT+TGG | 0.448522 | 1.3:+27775466 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.3:-27776766 | MS.gene64257:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1.3:-27775734 | MS.gene64257:CDS |
| AGATCATGATGATGATATTA+CGG | 0.459074 | 1.3:-27776440 | MS.gene64257:CDS |
| TATGATGGAGGATGAGGAAG+AGG | 0.471010 | 1.3:-27776569 | MS.gene64257:CDS |
| TGGAACAATCGAAATGTTAA+GGG | 0.479872 | 1.3:-27775349 | MS.gene64257:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1.3:-27775447 | MS.gene64257:CDS |
| CCTTGTGTGTTGCCACTGTA+AGG | 0.488769 | 1.3:-27775680 | MS.gene64257:intron |
| GAAGAAGTCTGGGTAATCCT+TGG | 0.492866 | 1.3:+27777144 | None:intergenic |
| TTGTGGCAAGATGTGATGAT+AGG | 0.494426 | 1.3:+27775518 | None:intergenic |
| GAGATCGTAGACGAAGAGAT+TGG | 0.495197 | 1.3:-27776789 | MS.gene64257:CDS |
| TAATAATATGATGGAGGATG+AGG | 0.497070 | 1.3:-27776575 | MS.gene64257:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1.3:-27775443 | MS.gene64257:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1.3:-27776319 | MS.gene64257:intron |
| GGAGGAAAATAATAATATGA+TGG | 0.511899 | 1.3:-27776584 | MS.gene64257:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1.3:-27776617 | MS.gene64257:CDS |
| AGAGAAGCACGCTGAAAGAA+TGG | 0.532134 | 1.3:-27777107 | MS.gene64257:intron |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1.3:-27775331 | MS.gene64257:CDS |
| CCTTACAGTGGCAACACACA+AGG | 0.552665 | 1.3:+27775680 | None:intergenic |
| GGAAAATAATAATATGATGG+AGG | 0.559551 | 1.3:-27776581 | MS.gene64257:CDS |
| TGATGATGATATTACGGCAG+AGG | 0.566025 | 1.3:-27776434 | MS.gene64257:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.3:-27775369 | MS.gene64257:CDS |
| GATGAGGAAGAGGACAATGA+TGG | 0.588535 | 1.3:-27776559 | MS.gene64257:CDS |
| GATGATGATTATGATTATGA+TGG | 0.594417 | 1.3:-27776511 | MS.gene64257:CDS |
| CAAGTACGTATATGGAGAGA+TGG | 0.596390 | 1.3:-27775465 | MS.gene64257:CDS |
| CATCATGATACCGATGATGA+TGG | 0.600687 | 1.3:-27776406 | MS.gene64257:CDS |
| AGATGAAAATTCTTTAGAGG+AGG | 0.603608 | 1.3:-27776704 | MS.gene64257:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1.3:-27777161 | None:intergenic |
| GAAGAAGGTAAATGACGAGG+AGG | 0.609557 | 1.3:-27776602 | MS.gene64257:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1.3:-27775446 | MS.gene64257:CDS |
| CATTCAGAGTAATGACTTAG+CGG | 0.619259 | 1.3:-27775541 | MS.gene64257:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1.3:-27775442 | MS.gene64257:CDS |
| GTTGTCATCACCATCATCAT+CGG | 0.625480 | 1.3:+27776396 | None:intergenic |
| TGTTGATGATATTATGGCAG+AGG | 0.631230 | 1.3:-27776467 | MS.gene64257:CDS |
| TCTTTCAGCGTGCTTCTCTG+AGG | 0.632246 | 1.3:+27777111 | None:intergenic |
| GCTGAAATGTATATTCAACC+GGG | 0.649231 | 1.3:-27776135 | MS.gene64257:CDS |
| ATTAGAATTATACCTTACAG+TGG | 0.654416 | 1.3:+27775668 | None:intergenic |
| ACAACACATATCGAAAAGAG+AGG | 0.662380 | 1.3:-27775489 | MS.gene64257:CDS |
| TGATGATGACGACGATGATG+AGG | 0.667494 | 1.3:-27776533 | MS.gene64257:CDS |
| AAAGAAGAAGGTAAATGACG+AGG | 0.671120 | 1.3:-27776605 | MS.gene64257:CDS |
| CTTACAGTGGCAACACACAA+GGG | 0.686432 | 1.3:+27775681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAGAAAAAAAAACAAT+TGG | + | chr1.3:27775425-27775444 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAAAACAATTGG+AGG | + | chr1.3:27775422-27775441 | None:intergenic | 20.0% |
| !! | GTTAAGAAATGAAAAGTAAA+AGG | + | chr1.3:27776519-27776538 | None:intergenic | 20.0% |
| !! | TCATAATTGTGAAAAATGAA+AGG | + | chr1.3:27776837-27776856 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.3:27775803-27775822 | None:intergenic | 20.0% |
| !!! | ATATATTTTGCAATAAAGTG+TGG | + | chr1.3:27776369-27776388 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1.3:27776258-27776277 | MS.gene64257:intron | 20.0% |
| !!! | TTTTGATAAAAAAACCAGTT+TGG | - | chr1.3:27775444-27775463 | MS.gene64257:CDS | 20.0% |
| ! | AAAGAATTGTACCAATTCAT+TGG | + | chr1.3:27776403-27776422 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+GGG | + | chr1.3:27776402-27776421 | None:intergenic | 25.0% |
| ! | ATATGTGTTGTACTTATTTG+TGG | + | chr1.3:27776976-27776995 | None:intergenic | 25.0% |
| ! | ATATTGAAAACAACGTATTC+AGG | - | chr1.3:27775814-27775833 | MS.gene64257:intron | 25.0% |
| ! | ATTAGAATTATACCTTACAG+TGG | + | chr1.3:27776809-27776828 | None:intergenic | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1.3:27776266-27776285 | None:intergenic | 25.0% |
| ! | GATGATGATTATGATTATGA+TGG | - | chr1.3:27775963-27775982 | MS.gene64257:intron | 25.0% |
| ! | GGAAAATAATAATATGATGG+AGG | - | chr1.3:27775893-27775912 | MS.gene64257:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGA+TGG | - | chr1.3:27775890-27775909 | MS.gene64257:intron | 25.0% |
| ! | TAGAGATGAAAATTCTTTAG+AGG | - | chr1.3:27775767-27775786 | MS.gene64257:intron | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1.3:27776740-27776759 | MS.gene64257:CDS | 25.0% |
| ! | TTCCATGTCAAAAAAAGTAA+TGG | + | chr1.3:27776430-27776449 | None:intergenic | 25.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1.3:27775343-27775362 | None:intergenic | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1.3:27776747-27776766 | None:intergenic | 25.0% |
| !! | AGATCATGATGATGATATTA+CGG | - | chr1.3:27776034-27776053 | MS.gene64257:intron | 25.0% |
| !! | CTCAATCAACATTTTCAATA+TGG | + | chr1.3:27776596-27776615 | None:intergenic | 25.0% |
| !!! | AAGTTGAATTCATCCTTTTT+TGG | - | chr1.3:27776899-27776918 | MS.gene64257:intron | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1.3:27776266-27776285 | MS.gene64257:intron | 25.0% |
| AAAAACAATTGGAGGAAGAA+TGG | + | chr1.3:27775414-27775433 | None:intergenic | 30.0% | |
| AAACTGAAATTGCAACAACT+TGG | + | chr1.3:27776648-27776667 | None:intergenic | 30.0% | |
| AATAAAGAGAATAACCAGAC+AGG | + | chr1.3:27776563-27776582 | None:intergenic | 30.0% | |
| AATACACTTATTAGACTCTG+AGG | + | chr1.3:27775507-27775526 | None:intergenic | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1.3:27775857-27775876 | MS.gene64257:intron | 30.0% | |
| ATGGAACAATCGAAATGTTA+AGG | - | chr1.3:27777124-27777143 | MS.gene64257:CDS | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1.3:27776103-27776122 | MS.gene64257:CDS | 30.0% | |
| TATATCTTTGCATACCAAAC+TGG | + | chr1.3:27775461-27775480 | None:intergenic | 30.0% | |
| TGCTGAAATGTATATTCAAC+CGG | - | chr1.3:27776338-27776357 | MS.gene64257:CDS | 30.0% | |
| TGGAACAATCGAAATGTTAA+GGG | - | chr1.3:27777125-27777144 | MS.gene64257:CDS | 30.0% | |
| ! | AGATGAAAATTCTTTAGAGG+AGG | - | chr1.3:27775770-27775789 | MS.gene64257:intron | 30.0% |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1.3:27775344-27775363 | None:intergenic | 30.0% |
| ! | TAATAATATGATGGAGGATG+AGG | - | chr1.3:27775899-27775918 | MS.gene64257:intron | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.3:27775606-27775625 | None:intergenic | 30.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.3:27775605-27775624 | None:intergenic | 30.0% |
| !!! | GTCCATTACTTTTTTTGACA+TGG | - | chr1.3:27776425-27776444 | MS.gene64257:CDS | 30.0% |
| AAAGAAGAAGGTAAATGACG+AGG | - | chr1.3:27775869-27775888 | MS.gene64257:intron | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1.3:27776985-27777004 | MS.gene64257:intron | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.3:27776719-27776738 | None:intergenic | 35.0% | |
| CATTCAGAGTAATGACTTAG+CGG | - | chr1.3:27776933-27776952 | MS.gene64257:intron | 35.0% | |
| CTGAGGAGATAACATTACTT+GGG | + | chr1.3:27775490-27775509 | None:intergenic | 35.0% | |
| GCTGAAATGTATATTCAACC+GGG | - | chr1.3:27776339-27776358 | MS.gene64257:CDS | 35.0% | |
| TCTGAGGAGATAACATTACT+TGG | + | chr1.3:27775491-27775510 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1.3:27775616-27775635 | MS.gene64257:intron | 35.0% | |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1.3:27776915-27776934 | None:intergenic | 35.0% | |
| ! | TGACATGTTTTGTGAAGTAG+AGG | + | chr1.3:27776773-27776792 | None:intergenic | 35.0% |
| !! | TGCTGCTGTTGATGATATTA+TGG | - | chr1.3:27776001-27776020 | MS.gene64257:intron | 35.0% |
| !! | TGTTGATGATATTATGGCAG+AGG | - | chr1.3:27776007-27776026 | MS.gene64257:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1.3:27776274-27776293 | MS.gene64257:intron | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.3:27776909-27776928 | MS.gene64257:intron | 35.0% |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.3:27775732-27775751 | MS.gene64257:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1.3:27776273-27776292 | MS.gene64257:intron | 35.0% |
| AAGACTAACTCCTCTACCTA+GGG | + | chr1.3:27776488-27776507 | None:intergenic | 40.0% | |
| ACTTGATGCGTTCAAAAAGG+AGG | - | chr1.3:27775619-27775638 | MS.gene64257:intron | 40.0% | |
| CAAGTACGTATATGGAGAGA+TGG | - | chr1.3:27777009-27777028 | MS.gene64257:intron | 40.0% | |
| CAGACAGGCATAAAGTACAA+AGG | + | chr1.3:27776548-27776567 | None:intergenic | 40.0% | |
| CATCATGATACCGATGATGA+TGG | - | chr1.3:27776068-27776087 | MS.gene64257:intron | 40.0% | |
| CATCTCTCCATATACGTACT+TGG | + | chr1.3:27777011-27777030 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+GGG | - | chr1.3:27775620-27775639 | MS.gene64257:intron | 40.0% | |
| CTTTGTACTTTATGCCTGTC+TGG | - | chr1.3:27776546-27776565 | MS.gene64257:CDS | 40.0% | |
| GCAATAAAGTGTGGATTTCC+CGG | + | chr1.3:27776360-27776379 | None:intergenic | 40.0% | |
| GGAACTTGATGCGTTCAAAA+AGG | - | chr1.3:27775637-27775656 | MS.gene64257:intron | 40.0% | |
| GTTGTCATCACCATCATCAT+CGG | + | chr1.3:27776081-27776100 | None:intergenic | 40.0% | |
| TAAGACTAACTCCTCTACCT+AGG | + | chr1.3:27776489-27776508 | None:intergenic | 40.0% | |
| TCATTCCAGACCCAATGAAT+TGG | - | chr1.3:27776389-27776408 | MS.gene64257:CDS | 40.0% | |
| TTGTACCAATTCATTGGGTC+TGG | + | chr1.3:27776397-27776416 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1.3:27776959-27776978 | None:intergenic | 40.0% | |
| ! | TGATGATGATATTACGGCAG+AGG | - | chr1.3:27776040-27776059 | MS.gene64257:intron | 40.0% |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1.3:27777139-27777158 | MS.gene64257:CDS | 40.0% |
| !! | TTGCAACAACTTGGCTTGTT+TGG | + | chr1.3:27776639-27776658 | None:intergenic | 40.0% |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1.3:27775736-27775755 | MS.gene64257:CDS | 40.0% |
| AGAGAGGCCAAGTACGTATA+TGG | - | chr1.3:27777001-27777020 | MS.gene64257:intron | 45.0% | |
| ATTTGCTCAACCCTAGGTAG+AGG | - | chr1.3:27776475-27776494 | MS.gene64257:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.3:27775708-27775727 | MS.gene64257:CDS | 45.0% | |
| CTCTTCGTCTACGATCTCTT+AGG | + | chr1.3:27775683-27775702 | None:intergenic | 45.0% | |
| CTTACAGTGGCAACACACAA+GGG | + | chr1.3:27776796-27776815 | None:intergenic | 45.0% | |
| GAAGAAGGTAAATGACGAGG+AGG | - | chr1.3:27775872-27775891 | MS.gene64257:intron | 45.0% | |
| GAAGAAGTCTGGGTAATCCT+TGG | + | chr1.3:27775333-27775352 | None:intergenic | 45.0% | |
| GAGATCGTAGACGAAGAGAT+TGG | - | chr1.3:27775685-27775704 | MS.gene64257:CDS | 45.0% | |
| GATGAGGAAGAGGACAATGA+TGG | - | chr1.3:27775915-27775934 | MS.gene64257:intron | 45.0% | |
| TAGTCCATTTGCTCAACCCT+AGG | - | chr1.3:27776469-27776488 | MS.gene64257:CDS | 45.0% | |
| TCTACCTAGGGTTGAGCAAA+TGG | + | chr1.3:27776476-27776495 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1.3:27777143-27777162 | MS.gene64257:CDS | 45.0% |
| ! | AGAGAAGCACGCTGAAAGAA+TGG | - | chr1.3:27775367-27775386 | MS.gene64257:CDS | 45.0% |
| ! | CTAGGGTGGGAAGATTTTTG+TGG | - | chr1.3:27777045-27777064 | MS.gene64257:intron | 45.0% |
| ! | TATGATGGAGGATGAGGAAG+AGG | - | chr1.3:27775905-27775924 | MS.gene64257:intron | 45.0% |
| ! | TGATGATGACGACGATGATG+AGG | - | chr1.3:27775941-27775960 | MS.gene64257:intron | 45.0% |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1.3:27776155-27776174 | MS.gene64257:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1.3:27777028-27777047 | MS.gene64257:intron | 50.0% | |
| CCTTACAGTGGCAACACACA+AGG | + | chr1.3:27776797-27776816 | None:intergenic | 50.0% | |
| CCTTGTGTGTTGCCACTGTA+AGG | - | chr1.3:27776794-27776813 | MS.gene64257:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1.3:27776162-27776181 | None:intergenic | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.3:27777105-27777124 | MS.gene64257:intron | 50.0% | |
| TCTTTCAGCGTGCTTCTCTG+AGG | + | chr1.3:27775366-27775385 | None:intergenic | 50.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1.3:27777027-27777046 | MS.gene64257:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.3:27777032-27777051 | MS.gene64257:intron | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.3:27777031-27777050 | MS.gene64257:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 27775326 | 27777170 | 27775326 | ID=MS.gene64257 |
| chr1.3 | mRNA | 27775326 | 27777170 | 27775326 | ID=MS.gene64257.t1;Parent=MS.gene64257 |
| chr1.3 | exon | 27777108 | 27777170 | 27777108 | ID=MS.gene64257.t1.exon1;Parent=MS.gene64257.t1 |
| chr1.3 | CDS | 27777108 | 27777170 | 27777108 | ID=cds.MS.gene64257.t1;Parent=MS.gene64257.t1 |
| chr1.3 | exon | 27776320 | 27776899 | 27776320 | ID=MS.gene64257.t1.exon2;Parent=MS.gene64257.t1 |
| chr1.3 | CDS | 27776320 | 27776899 | 27776320 | ID=cds.MS.gene64257.t1;Parent=MS.gene64257.t1 |
| chr1.3 | exon | 27776086 | 27776210 | 27776086 | ID=MS.gene64257.t1.exon3;Parent=MS.gene64257.t1 |
| chr1.3 | CDS | 27776086 | 27776210 | 27776086 | ID=cds.MS.gene64257.t1;Parent=MS.gene64257.t1 |
| chr1.3 | exon | 27775681 | 27775758 | 27775681 | ID=MS.gene64257.t1.exon4;Parent=MS.gene64257.t1 |
| chr1.3 | CDS | 27775681 | 27775758 | 27775681 | ID=cds.MS.gene64257.t1;Parent=MS.gene64257.t1 |
| chr1.3 | exon | 27775326 | 27775565 | 27775326 | ID=MS.gene64257.t1.exon5;Parent=MS.gene64257.t1 |
| chr1.3 | CDS | 27775326 | 27775565 | 27775326 | ID=cds.MS.gene64257.t1;Parent=MS.gene64257.t1 |
| Gene Sequence |
| Protein sequence |
