Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64262.t1 | XP_013467138.1 | 86.6 | 352 | 18 | 2 | 1 | 351 | 1 | 324 | 3.10E-138 | 501.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64262.t1 | Q9M8K2 | 27.6 | 344 | 207 | 5 | 6 | 349 | 23 | 324 | 1.1e-06 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64262.t1 | A0A072VGJ6 | 86.6 | 352 | 18 | 2 | 1 | 351 | 1 | 324 | 2.3e-138 | 501.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64262.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64262.t1 | MTR_1g046340 | 61.538 | 351 | 114 | 4 | 2 | 351 | 5 | 335 | 1.06e-135 | 390 |
| MS.gene64262.t1 | MTR_1g046200 | 92.308 | 169 | 12 | 1 | 184 | 351 | 156 | 324 | 3.28e-112 | 330 |
| MS.gene64262.t1 | MTR_1g046320 | 73.256 | 172 | 44 | 1 | 179 | 350 | 164 | 333 | 3.10e-88 | 269 |
| MS.gene64262.t1 | MTR_3g088515 | 52.823 | 248 | 98 | 5 | 2 | 246 | 16 | 247 | 2.73e-57 | 186 |
| MS.gene64262.t1 | MTR_1g021435 | 26.380 | 163 | 114 | 3 | 9 | 167 | 22 | 182 | 8.30e-14 | 72.0 |
| MS.gene64262.t1 | MTR_1g021400 | 25.352 | 142 | 102 | 2 | 13 | 154 | 36 | 173 | 2.08e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64262.t1 | AT3G06160 | 23.276 | 348 | 217 | 6 | 6 | 349 | 8 | 309 | 4.40e-21 | 92.8 |
| MS.gene64262.t1 | AT3G06160 | 23.276 | 348 | 217 | 6 | 6 | 349 | 8 | 309 | 4.40e-21 | 92.8 |
| MS.gene64262.t1 | AT3G06160 | 23.276 | 348 | 217 | 6 | 6 | 349 | 8 | 309 | 4.40e-21 | 92.8 |
| MS.gene64262.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 23 | 324 | 5.87e-21 | 92.4 |
| MS.gene64262.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 67 | 368 | 1.03e-20 | 92.4 |
| MS.gene64262.t1 | AT5G57720 | 22.535 | 355 | 200 | 13 | 5 | 349 | 10 | 299 | 5.60e-14 | 72.0 |
| MS.gene64262.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 3.35e-11 | 62.4 |
| MS.gene64262.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 4.09e-11 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1.3:+27823125 | None:intergenic |
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1.3:+27822831 | None:intergenic |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1.3:-27822430 | MS.gene64262:CDS |
| TAGAGGGGAAAATTCTTTAG+AGG | 0.319546 | 1.3:-27823707 | MS.gene64262:CDS |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1.3:-27823485 | MS.gene64262:CDS |
| GCATCAATTTCGTCGTCTTC+AGG | 0.326868 | 1.3:+27823165 | None:intergenic |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1.3:+27823324 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1.3:+27823084 | None:intergenic |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1.3:-27823452 | MS.gene64262:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.3:+27823850 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.358189 | 1.3:-27823837 | MS.gene64262:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1.3:+27823794 | None:intergenic |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1.3:+27823089 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1.3:+27823126 | None:intergenic |
| ATATGTGTTGTGCTTATTTG+TGG | 0.421461 | 1.3:+27822596 | None:intergenic |
| ATATTGAAAACAACATATTC+AGG | 0.423216 | 1.3:-27823660 | MS.gene64262:CDS |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.3:+27823851 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1.3:-27823094 | MS.gene64262:intron |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1.3:+27822781 | None:intergenic |
| GATGGCTGGAAGCAATTTAG+AGG | 0.442063 | 1.3:-27823724 | MS.gene64262:CDS |
| CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1.3:-27823587 | MS.gene64262:CDS |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1.3:+27822561 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.3:-27823766 | MS.gene64262:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1.3:-27822835 | MS.gene64262:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1.3:-27822542 | MS.gene64262:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1.3:+27822613 | None:intergenic |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1.3:-27823789 | MS.gene64262:CDS |
| CAATATGGAGGATGAGGAAG+AGG | 0.500994 | 1.3:-27823572 | MS.gene64262:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1.3:-27822538 | MS.gene64262:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1.3:-27823328 | MS.gene64262:intron |
| AAATAACAATATGGAGGATG+AGG | 0.505646 | 1.3:-27823578 | MS.gene64262:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1.3:-27823617 | MS.gene64262:CDS |
| AGGGGAAAATTCTTTAGAGG+AGG | 0.523950 | 1.3:-27823704 | MS.gene64262:CDS |
| AGAGAAGCACACTGAAAGAA+TGG | 0.539987 | 1.3:-27824039 | MS.gene64262:intron |
| TCTTTCAGTGTGCTTCTCTG+TGG | 0.540953 | 1.3:+27824043 | None:intergenic |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1.3:-27822426 | MS.gene64262:CDS |
| GATGAGGAAGAGGACGGTGA+TGG | 0.556360 | 1.3:-27823562 | MS.gene64262:CDS |
| CGAGAATGAAAGAATGTACA+AGG | 0.558420 | 1.3:-27823380 | MS.gene64262:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1.3:-27823446 | MS.gene64262:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.3:-27822464 | MS.gene64262:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1.3:+27822782 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1.3:-27822560 | MS.gene64262:CDS |
| AATTGTAACTAAGATGGCTA+AGG | 0.582612 | 1.3:-27824093 | None:intergenic |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1.3:-27822781 | MS.gene64262:intron |
| AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1.3:-27823605 | MS.gene64262:CDS |
| GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1.3:-27823602 | MS.gene64262:CDS |
| ATGGCTGGAAGCAATTTAGA+GGG | 0.607200 | 1.3:-27823723 | MS.gene64262:CDS |
| CATGATACCGATGATGATGA+TGG | 0.612164 | 1.3:-27823415 | MS.gene64262:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1.3:-27822541 | MS.gene64262:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1.3:-27822537 | MS.gene64262:CDS |
| GTCATCACCATCATCATCAT+CGG | 0.626181 | 1.3:+27823408 | None:intergenic |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1.3:-27823479 | MS.gene64262:CDS |
| AATTATACTATACCTTGCAG+TGG | 0.634623 | 1.3:+27822769 | None:intergenic |
| GGAGGAAAATAACAATATGG+AGG | 0.639547 | 1.3:-27823584 | MS.gene64262:CDS |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1.3:-27822568 | MS.gene64262:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1.3:-27823144 | MS.gene64262:CDS |
| ATGGAGGATGAGGAAGAGGA+CGG | 0.656729 | 1.3:-27823568 | MS.gene64262:CDS |
| ACAACACATATCGAAAAGAG+AGG | 0.679363 | 1.3:-27822584 | MS.gene64262:CDS |
| TGGCTGGAAGCAATTTAGAG+GGG | 0.710633 | 1.3:-27823722 | MS.gene64262:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1.3:-27823536 | MS.gene64262:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1.3:-27823799 | MS.gene64262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCAAAAAAAAAAAGTAA+TGG | + | chr1.3:27823448-27823467 | None:intergenic | 15.0% |
| !!! | ATTACTTTTTTTTTTTGACA+TGG | - | chr1.3:27823447-27823466 | MS.gene64262:CDS | 15.0% |
| !! | ATATTGAAAACAACATATTC+AGG | - | chr1.3:27822841-27822860 | MS.gene64262:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | + | chr1.3:27823768-27823787 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.3:27822830-27822849 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | - | chr1.3:27823276-27823295 | MS.gene64262:intron | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | + | chr1.3:27823216-27823235 | None:intergenic | 20.0% |
| !!! | CAAATTGGTTTTTTTCAAAA+AGG | + | chr1.3:27822527-27822546 | None:intergenic | 20.0% |
| !!! | CTTTTTGAAAAAAACCAATT+TGG | - | chr1.3:27822525-27822544 | MS.gene64262:CDS | 20.0% |
| !!! | TTTTTCAAAAAGGAAGAAAA+AGG | + | chr1.3:27822517-27822536 | None:intergenic | 20.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | + | chr1.3:27823420-27823439 | None:intergenic | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | + | chr1.3:27823799-27823818 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | - | chr1.3:27824056-27824075 | MS.gene64262:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | + | chr1.3:27823284-27823303 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | + | chr1.3:27823758-27823777 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1.3:27823666-27823685 | MS.gene64262:CDS | 25.0% |
| ! | TATTTCTTTGCATACCAAAT+TGG | + | chr1.3:27822542-27822561 | None:intergenic | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | - | chr1.3:27824057-27824076 | MS.gene64262:CDS | 25.0% |
| !! | AAAAAACTTTGAAGAAGTCT+GGG | + | chr1.3:27822438-27822457 | None:intergenic | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1.3:27823673-27823692 | None:intergenic | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | - | chr1.3:27823049-27823068 | MS.gene64262:intron | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | + | chr1.3:27823387-27823406 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | - | chr1.3:27823770-27823789 | MS.gene64262:CDS | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | - | chr1.3:27823284-27823303 | MS.gene64262:intron | 25.0% |
| AAATAACAATATGGAGGATG+AGG | - | chr1.3:27822923-27822942 | MS.gene64262:intron | 30.0% | |
| AATTATACTATACCTTGCAG+TGG | + | chr1.3:27823735-27823754 | None:intergenic | 30.0% | |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1.3:27823908-27823927 | None:intergenic | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | - | chr1.3:27822884-27822903 | MS.gene64262:intron | 30.0% | |
| CAAGTAAAATTGCAACAACT+TGG | + | chr1.3:27823574-27823593 | None:intergenic | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | - | chr1.3:27822914-27822933 | MS.gene64262:intron | 30.0% | |
| TTCAAAAAGGAAGGTCATAA+AGG | - | chr1.3:27822677-27822696 | MS.gene64262:intron | 30.0% | |
| ! | GAAAAAACTTTGAAGAAGTC+TGG | + | chr1.3:27822439-27822458 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.3:27822654-27822673 | None:intergenic | 30.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.3:27822653-27822672 | None:intergenic | 30.0% |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | - | chr1.3:27823831-27823850 | MS.gene64262:CDS | 30.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | - | chr1.3:27822896-27822915 | MS.gene64262:intron | 35.0% | |
| AAAGGAAGAAAAAGGAAGCA+TGG | + | chr1.3:27822509-27822528 | None:intergenic | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1.3:27823917-27823936 | MS.gene64262:intron | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.3:27823645-27823664 | None:intergenic | 35.0% | |
| CGAGAATGAAAGAATGTACA+AGG | - | chr1.3:27823121-27823140 | MS.gene64262:CDS | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | + | chr1.3:27823541-27823560 | None:intergenic | 35.0% | |
| GCTGAAATGTATATTCAACC+CGG | - | chr1.3:27823357-27823376 | MS.gene64262:CDS | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | - | chr1.3:27822917-27822936 | MS.gene64262:intron | 35.0% | |
| TAGAGGGGAAAATTCTTTAG+AGG | - | chr1.3:27822794-27822813 | MS.gene64262:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1.3:27823407-27823426 | MS.gene64262:CDS | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1.3:27822664-27822683 | MS.gene64262:intron | 35.0% | |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1.3:27823847-27823866 | None:intergenic | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | + | chr1.3:27823415-27823434 | None:intergenic | 35.0% | |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1.3:27822702-27822721 | MS.gene64262:intron | 35.0% | |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1.3:27823022-27823041 | MS.gene64262:intron | 35.0% |
| ! | TGCTGCTGATGATGATATTA+TGG | - | chr1.3:27823016-27823035 | MS.gene64262:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | - | chr1.3:27823292-27823311 | MS.gene64262:intron | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.3:27823841-27823860 | MS.gene64262:CDS | 35.0% |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.3:27822759-27822778 | MS.gene64262:intron | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | - | chr1.3:27823291-27823310 | MS.gene64262:intron | 35.0% |
| ATGGCTGGAAGCAATTTAGA+GGG | - | chr1.3:27822778-27822797 | MS.gene64262:intron | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | - | chr1.3:27823497-27823516 | MS.gene64262:CDS | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+AGG | - | chr1.3:27822668-27822687 | MS.gene64262:intron | 40.0% | |
| GTCATCACCATCATCATCAT+CGG | + | chr1.3:27823096-27823115 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | - | chr1.3:27823491-27823510 | MS.gene64262:CDS | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | + | chr1.3:27823498-27823517 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | + | chr1.3:27823379-27823398 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1.3:27823891-27823910 | None:intergenic | 40.0% | |
| ! | AGAGAAGCACACTGAAAGAA+TGG | - | chr1.3:27822462-27822481 | MS.gene64262:CDS | 40.0% |
| ! | AGGGGAAAATTCTTTAGAGG+AGG | - | chr1.3:27822797-27822816 | MS.gene64262:CDS | 40.0% |
| ! | CATGATACCGATGATGATGA+TGG | - | chr1.3:27823086-27823105 | MS.gene64262:intron | 40.0% |
| ! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1.3:27823699-27823718 | None:intergenic | 40.0% |
| ! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1.3:27824071-27824090 | MS.gene64262:CDS | 40.0% |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1.3:27822763-27822782 | MS.gene64262:intron | 40.0% |
| CAATATGGAGGATGAGGAAG+AGG | - | chr1.3:27822929-27822948 | MS.gene64262:intron | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.3:27822735-27822754 | MS.gene64262:intron | 45.0% | |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1.3:27822710-27822729 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | + | chr1.3:27823722-27823741 | None:intergenic | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | - | chr1.3:27822899-27822918 | MS.gene64262:intron | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1.3:27822712-27822731 | MS.gene64262:intron | 45.0% | |
| GATGGCTGGAAGCAATTTAG+AGG | - | chr1.3:27822777-27822796 | MS.gene64262:intron | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | + | chr1.3:27823378-27823397 | None:intergenic | 45.0% | |
| GCATCAATTTCGTCGTCTTC+AGG | + | chr1.3:27823339-27823358 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | + | chr1.3:27823510-27823529 | None:intergenic | 45.0% | |
| TCTTTCAGTGTGCTTCTCTG+TGG | + | chr1.3:27822461-27822480 | None:intergenic | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+GGG | - | chr1.3:27822779-27822798 | MS.gene64262:intron | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | + | chr1.3:27823511-27823530 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1.3:27824075-27824094 | MS.gene64262:CDS | 45.0% |
| ! | TGATGATGATGACGATGACG+AGG | - | chr1.3:27822965-27822984 | MS.gene64262:intron | 45.0% |
| AGAACCTGCAAGTGCAAAGC+TGG | - | chr1.3:27823173-27823192 | MS.gene64262:CDS | 50.0% | |
| ATGGAGGATGAGGAAGAGGA+CGG | - | chr1.3:27822933-27822952 | MS.gene64262:intron | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | - | chr1.3:27823960-27823979 | MS.gene64262:intron | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | - | chr1.3:27823941-27823960 | MS.gene64262:intron | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | + | chr1.3:27823943-27823962 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | - | chr1.3:27823720-27823739 | MS.gene64262:CDS | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | + | chr1.3:27823723-27823742 | None:intergenic | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | + | chr1.3:27823180-27823199 | None:intergenic | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.3:27824037-27824056 | MS.gene64262:intron | 50.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | - | chr1.3:27823933-27823952 | MS.gene64262:intron | 55.0% | |
| GATGAGGAAGAGGACGGTGA+TGG | - | chr1.3:27822939-27822958 | MS.gene64262:intron | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | - | chr1.3:27823959-27823978 | MS.gene64262:intron | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.3:27823964-27823983 | MS.gene64262:intron | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.3:27823963-27823982 | MS.gene64262:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 27822421 | 27824102 | 27822421 | ID=MS.gene64262 |
| chr1.3 | mRNA | 27822421 | 27824102 | 27822421 | ID=MS.gene64262.t1;Parent=MS.gene64262 |
| chr1.3 | exon | 27824040 | 27824102 | 27824040 | ID=MS.gene64262.t1.exon1;Parent=MS.gene64262.t1 |
| chr1.3 | CDS | 27824040 | 27824102 | 27824040 | ID=cds.MS.gene64262.t1;Parent=MS.gene64262.t1 |
| chr1.3 | exon | 27823329 | 27823878 | 27823329 | ID=MS.gene64262.t1.exon2;Parent=MS.gene64262.t1 |
| chr1.3 | CDS | 27823329 | 27823878 | 27823329 | ID=cds.MS.gene64262.t1;Parent=MS.gene64262.t1 |
| chr1.3 | exon | 27823095 | 27823219 | 27823095 | ID=MS.gene64262.t1.exon3;Parent=MS.gene64262.t1 |
| chr1.3 | CDS | 27823095 | 27823219 | 27823095 | ID=cds.MS.gene64262.t1;Parent=MS.gene64262.t1 |
| chr1.3 | exon | 27822782 | 27822859 | 27822782 | ID=MS.gene64262.t1.exon4;Parent=MS.gene64262.t1 |
| chr1.3 | CDS | 27822782 | 27822859 | 27822782 | ID=cds.MS.gene64262.t1;Parent=MS.gene64262.t1 |
| chr1.3 | exon | 27822421 | 27822660 | 27822421 | ID=MS.gene64262.t1.exon5;Parent=MS.gene64262.t1 |
| chr1.3 | CDS | 27822421 | 27822660 | 27822421 | ID=cds.MS.gene64262.t1;Parent=MS.gene64262.t1 |
| Gene Sequence |
| Protein sequence |
