Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64270.t1 | KEH41183.1 | 85.3 | 341 | 46 | 1 | 1 | 341 | 1 | 337 | 1.40E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64270.t1 | Q9M8K2 | 27.2 | 334 | 205 | 7 | 9 | 336 | 23 | 324 | 1.5e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64270.t1 | A0A072VIA5 | 85.3 | 341 | 46 | 1 | 1 | 341 | 1 | 337 | 1.0e-135 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64270.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64270.t1 | MTR_1g046320 | 80.059 | 341 | 64 | 1 | 1 | 341 | 1 | 337 | 2.56e-180 | 502 |
| MS.gene64270.t1 | MTR_1g046340 | 63.095 | 336 | 121 | 1 | 1 | 336 | 1 | 333 | 5.02e-144 | 410 |
| MS.gene64270.t1 | MTR_1g046200 | 74.667 | 150 | 38 | 0 | 188 | 337 | 174 | 323 | 5.53e-78 | 242 |
| MS.gene64270.t1 | MTR_3g088515 | 48.800 | 250 | 95 | 4 | 2 | 233 | 13 | 247 | 1.87e-57 | 186 |
| MS.gene64270.t1 | MTR_1g021350 | 35.000 | 100 | 60 | 3 | 12 | 109 | 22 | 118 | 8.92e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64270.t1 | AT3G06160 | 24.551 | 334 | 214 | 8 | 9 | 336 | 8 | 309 | 1.27e-19 | 88.6 |
| MS.gene64270.t1 | AT3G06160 | 24.551 | 334 | 214 | 8 | 9 | 336 | 8 | 309 | 1.27e-19 | 88.6 |
| MS.gene64270.t1 | AT3G06160 | 24.551 | 334 | 214 | 8 | 9 | 336 | 8 | 309 | 1.27e-19 | 88.6 |
| MS.gene64270.t1 | AT3G06160 | 24.551 | 334 | 214 | 8 | 9 | 336 | 23 | 324 | 1.36e-19 | 88.6 |
| MS.gene64270.t1 | AT3G06160 | 24.551 | 334 | 214 | 8 | 9 | 336 | 67 | 368 | 2.12e-19 | 88.6 |
| MS.gene64270.t1 | AT5G57720 | 24.855 | 346 | 201 | 14 | 1 | 336 | 3 | 299 | 4.70e-17 | 80.9 |
| MS.gene64270.t1 | AT3G53310 | 30.534 | 131 | 83 | 2 | 1 | 125 | 1 | 129 | 1.65e-14 | 73.2 |
| MS.gene64270.t1 | AT4G34400 | 23.641 | 423 | 199 | 13 | 2 | 336 | 7 | 393 | 3.26e-14 | 73.6 |
| MS.gene64270.t1 | AT4G34400 | 23.641 | 423 | 199 | 13 | 2 | 336 | 7 | 393 | 3.26e-14 | 73.6 |
| MS.gene64270.t1 | AT5G60130 | 23.631 | 347 | 211 | 11 | 9 | 335 | 12 | 324 | 1.61e-12 | 67.8 |
| MS.gene64270.t1 | AT5G60130 | 23.631 | 347 | 211 | 11 | 9 | 335 | 9 | 321 | 1.73e-12 | 67.8 |
| MS.gene64270.t1 | AT5G18000 | 38.144 | 97 | 56 | 3 | 9 | 102 | 18 | 113 | 3.61e-11 | 63.5 |
Find 52 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGAGTGCTTCTCTTTA+AGG | 0.090193 | 1.3:-28044079 | None:intergenic |
| CTCTTCCTTTACGATCTCTT+AGG | 0.295446 | 1.3:-28044497 | None:intergenic |
| ACCAAGTTCACAAAAGCATT+TGG | 0.331753 | 1.3:-28044441 | None:intergenic |
| AAAGAATTATACCAATTCAT+TGG | 0.334519 | 1.3:-28045233 | None:intergenic |
| TAGAGAAGAAAACTGTTTAG+TGG | 0.335936 | 1.3:+28044584 | MS.gene64270:CDS |
| TGAGGAGGAAAATAATAATA+TGG | 0.339726 | 1.3:+28044704 | MS.gene64270:CDS |
| CATCAATTTCATCATCTTCA+AGG | 0.360750 | 1.3:-28045150 | None:intergenic |
| TGAACTTGGTGCGTTCAAAA+AGG | 0.361173 | 1.3:+28044454 | MS.gene64270:CDS |
| TGATAAGGGTGCACATTGTT+AGG | 0.364925 | 1.3:+28045825 | MS.gene64270:CDS |
| GATGGTGATGATGTTGATTA+TGG | 0.366118 | 1.3:+28044747 | MS.gene64270:CDS |
| GCAAAGAAATGTGGATTTCC+CGG | 0.368639 | 1.3:-28045190 | None:intergenic |
| TGCTGAATTGTACATTCAAC+CGG | 0.384241 | 1.3:+28045171 | MS.gene64270:CDS |
| GGAAGATGAGGAAGAGGAAG+AGG | 0.385448 | 1.3:+28044725 | MS.gene64270:CDS |
| CCAAGTTCACAAAAGCATTT+GGG | 0.414978 | 1.3:-28044440 | None:intergenic |
| AAGAATTATACCAATTCATT+GGG | 0.416544 | 1.3:-28045232 | None:intergenic |
| GAGAAGCAATAGAAATGATA+AGG | 0.417868 | 1.3:+28045810 | MS.gene64270:CDS |
| TCTTTACAGACCCAATGAAT+TGG | 0.436856 | 1.3:+28045222 | MS.gene64270:CDS |
| TAATATGGAAGATGAGGAAG+AGG | 0.461266 | 1.3:+28044719 | MS.gene64270:CDS |
| GACATCGGAAGCAGCTCTGC+AGG | 0.476732 | 1.3:+28045121 | MS.gene64270:CDS |
| GAGATCGTAAAGGAAGAGAT+TGG | 0.499124 | 1.3:+28044502 | MS.gene64270:CDS |
| AATGGCCGAGTCTTGGTGCT+AGG | 0.508826 | 1.3:+28045713 | MS.gene64270:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.512825 | 1.3:-28045470 | None:intergenic |
| GATGAGGAAGAGGAAGAGGA+TGG | 0.519418 | 1.3:+28044729 | MS.gene64270:CDS |
| AGAGAAGCACTCTGAGAGAA+TGG | 0.526426 | 1.3:+28044085 | MS.gene64270:CDS |
| AGAGAGGTCAAATACGTACT+TGG | 0.526584 | 1.3:+28045687 | MS.gene64270:CDS |
| AGAAGCAATAGAAATGATAA+GGG | 0.545719 | 1.3:+28045811 | MS.gene64270:CDS |
| ATGGCCGAGTCTTGGTGCTA+GGG | 0.545802 | 1.3:+28045714 | MS.gene64270:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.551559 | 1.3:+28045829 | MS.gene64270:CDS |
| AACAATGCAAAGGAGTATCC+TGG | 0.558136 | 1.3:+28044041 | MS.gene64270:CDS |
| GTGTGAAAAGATGCCGGTGA+TGG | 0.558389 | 1.3:+28044680 | MS.gene64270:CDS |
| AAATAATAATATGGAAGATG+AGG | 0.565051 | 1.3:+28044713 | MS.gene64270:CDS |
| TAATGATGATGATGATATGA+TGG | 0.571680 | 1.3:+28044836 | MS.gene64270:CDS |
| GACGATGAGGGTGATGATGA+GGG | 0.579768 | 1.3:+28044813 | MS.gene64270:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.583961 | 1.3:+28045470 | MS.gene64270:CDS |
| ATTAGAATTATACCTTGCAG+TGG | 0.588165 | 1.3:-28045482 | None:intergenic |
| TGACGATGAGGGTGATGATG+AGG | 0.595776 | 1.3:+28044812 | MS.gene64270:CDS |
| AAAGATGCCGGTGATGGATG+AGG | 0.602253 | 1.3:+28044686 | MS.gene64270:CDS |
| GCCACCCTAGCACCAAGACT+CGG | 0.602379 | 1.3:-28045718 | None:intergenic |
| GCCGAGTCTTGGTGCTAGGG+TGG | 0.603546 | 1.3:+28045717 | MS.gene64270:CDS |
| ATCAATGTGTGAAAAGATGC+CGG | 0.608751 | 1.3:+28044674 | MS.gene64270:CDS |
| GTATGTCTTGTGCTGATCTG+TGG | 0.608903 | 1.3:-28045659 | None:intergenic |
| TGATGATGATGATGCTGAAG+AGG | 0.610168 | 1.3:+28044779 | MS.gene64270:CDS |
| GATGATGATGATGCTGAAGA+GGG | 0.617100 | 1.3:+28044780 | MS.gene64270:CDS |
| TGATGATGATATGATGGCAG+AGG | 0.617100 | 1.3:+28044842 | MS.gene64270:CDS |
| TTTATCCTAAGAGATCGTAA+AGG | 0.619885 | 1.3:+28044492 | MS.gene64270:CDS |
| GGTGATGATAGTGACGATGA+GGG | 0.623737 | 1.3:+28044801 | MS.gene64270:CDS |
| AACTATGACTAACAATGCAA+AGG | 0.632234 | 1.3:+28044031 | None:intergenic |
| GGGTGATGATAGTGACGATG+AGG | 0.647049 | 1.3:+28044800 | MS.gene64270:CDS |
| GATGCCGGTGATGGATGAGG+AGG | 0.648893 | 1.3:+28044689 | MS.gene64270:CDS |
| TGTGAACTTGTAATGCGTAA+CGG | 0.682308 | 1.3:+28045788 | MS.gene64270:CDS |
| ACAAGACATACCGAAAAGAG+AGG | 0.689496 | 1.3:+28045671 | MS.gene64270:CDS |
| GCTGAATTGTACATTCAACC+GGG | 0.697197 | 1.3:+28045172 | MS.gene64270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAAAAGAAATCATT+AGG | - | chr1.3:28045098-28045117 | None:intergenic | 15.0% |
| !! | TTTCATAATTGTGAAAAATA+TGG | - | chr1.3:28045521-28045540 | None:intergenic | 15.0% |
| !!! | AATGATTTCTTTTGTTTTTA+GGG | + | chr1.3:28045098-28045117 | MS.gene64270:intron | 15.0% |
| !!! | TAATGATTTCTTTTGTTTTT+AGG | + | chr1.3:28045097-28045116 | MS.gene64270:intron | 15.0% |
| !!! | TTTTTGCTTTTTTATAAGTT+CGG | + | chr1.3:28044145-28044164 | MS.gene64270:intron | 15.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | - | chr1.3:28045236-28045255 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | + | chr1.3:28044713-28044732 | MS.gene64270:CDS | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | - | chr1.3:28045235-28045254 | None:intergenic | 20.0% |
| !! | AATATCCTGTCATAAAAAAA+AGG | - | chr1.3:28045603-28045622 | None:intergenic | 20.0% |
| !! | ATAATTGTGAAAAATATGGA+AGG | - | chr1.3:28045517-28045536 | None:intergenic | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | + | chr1.3:28044948-28044967 | MS.gene64270:intron | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | - | chr1.3:28044620-28044639 | None:intergenic | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+CGG | - | chr1.3:28045423-28045442 | None:intergenic | 20.0% |
| !!! | ATGATTTCTTTTGTTTTTAG+GGG | + | chr1.3:28045099-28045118 | MS.gene64270:intron | 20.0% |
| ! | ACTATATGATATGTGAACTT+TGG | + | chr1.3:28044334-28044353 | MS.gene64270:intron | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | + | chr1.3:28045811-28045830 | MS.gene64270:CDS | 25.0% |
| ! | GATAACACAATCAGTAAAAT+AGG | - | chr1.3:28045550-28045569 | None:intergenic | 25.0% |
| ! | TAAGTAACATTGATCTTCAT+TGG | + | chr1.3:28044394-28044413 | MS.gene64270:intron | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | + | chr1.3:28044704-28044723 | MS.gene64270:CDS | 25.0% |
| !! | TAATGATGATGATGATATGA+TGG | + | chr1.3:28044836-28044855 | MS.gene64270:CDS | 25.0% |
| !! | TTTTCCGAAAAATGTTATCA+AGG | + | chr1.3:28045416-28045435 | MS.gene64270:CDS | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | + | chr1.3:28044553-28044572 | MS.gene64270:CDS | 25.0% |
| !!! | GATGAGTTTTATTTTGATGA+TGG | + | chr1.3:28044549-28044568 | MS.gene64270:CDS | 25.0% |
| !!! | TATTTTTTACCATACGCAAA+AGG | + | chr1.3:28045284-28045303 | MS.gene64270:intron | 25.0% |
| !!! | TTCATCCTTTTTTTTATGAC+AGG | + | chr1.3:28045595-28045614 | MS.gene64270:intron | 25.0% |
| ATTAGAATTATACCTTGCAG+TGG | - | chr1.3:28045485-28045504 | None:intergenic | 30.0% | |
| CAAATACGTACTTGGAAAAA+TGG | + | chr1.3:28045695-28045714 | MS.gene64270:CDS | 30.0% | |
| CATCAATTTCATCATCTTCA+AGG | - | chr1.3:28045153-28045172 | None:intergenic | 30.0% | |
| CGTCTTTGATGTACTTATTA+TGG | + | chr1.3:28045382-28045401 | MS.gene64270:intron | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | + | chr1.3:28045810-28045829 | MS.gene64270:CDS | 30.0% | |
| TAGAGAAGAAAACTGTTTAG+TGG | + | chr1.3:28044584-28044603 | MS.gene64270:CDS | 30.0% | |
| TCAACTATATTGACACATCA+GGG | + | chr1.3:28044192-28044211 | MS.gene64270:intron | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | + | chr1.3:28044467-28044486 | MS.gene64270:CDS | 30.0% | |
| TTTATCCTAAGAGATCGTAA+AGG | + | chr1.3:28044492-28044511 | MS.gene64270:CDS | 30.0% | |
| ! | CTATGTTTTGCAAAGAAATG+TGG | - | chr1.3:28045202-28045221 | None:intergenic | 30.0% |
| !! | AAGTTTTGATGTGTTGCATA+TGG | - | chr1.3:28044226-28044245 | None:intergenic | 30.0% |
| ACAGAGTGAAAATGTGTACA+AGG | + | chr1.3:28044932-28044951 | MS.gene64270:intron | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | + | chr1.3:28044674-28044693 | MS.gene64270:CDS | 35.0% | |
| CTCAACTATATTGACACATC+AGG | + | chr1.3:28044191-28044210 | MS.gene64270:intron | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | + | chr1.3:28044719-28044738 | MS.gene64270:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | - | chr1.3:28044991-28045010 | None:intergenic | 35.0% | |
| TCTTTACAGACCCAATGAAT+TGG | + | chr1.3:28045222-28045241 | MS.gene64270:CDS | 35.0% | |
| TGCTGAATTGTACATTCAAC+CGG | + | chr1.3:28045171-28045190 | MS.gene64270:CDS | 35.0% | |
| TGTGAACTTGTAATGCGTAA+CGG | + | chr1.3:28045788-28045807 | MS.gene64270:CDS | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | - | chr1.3:28045684-28045703 | None:intergenic | 35.0% |
| ! | CACAATAAACCTTTTGCGTA+TGG | - | chr1.3:28045296-28045315 | None:intergenic | 35.0% |
| ! | GATGGTGATGATGTTGATTA+TGG | + | chr1.3:28044747-28044766 | MS.gene64270:CDS | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | - | chr1.3:28045449-28045468 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | - | chr1.3:28044444-28044463 | None:intergenic | 35.0% |
| !! | CCAAGTTCACAAAAGCATTT+GGG | - | chr1.3:28044443-28044462 | None:intergenic | 35.0% |
| !!! | CTTTTGTTTTTAGGGGACAT+CGG | + | chr1.3:28045106-28045125 | MS.gene64270:intron | 35.0% |
| ACAAGACATACCGAAAAGAG+AGG | + | chr1.3:28045671-28045690 | MS.gene64270:CDS | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | + | chr1.3:28045687-28045706 | MS.gene64270:CDS | 40.0% | |
| ATCATGCAAGTGTACATTGC+AGG | - | chr1.3:28044258-28044277 | None:intergenic | 40.0% | |
| CTCTTCCTTTACGATCTCTT+AGG | - | chr1.3:28044500-28044519 | None:intergenic | 40.0% | |
| GAGATCGTAAAGGAAGAGAT+TGG | + | chr1.3:28044502-28044521 | MS.gene64270:CDS | 40.0% | |
| GCAAAGAAATGTGGATTTCC+CGG | - | chr1.3:28045193-28045212 | None:intergenic | 40.0% | |
| GCTGAATTGTACATTCAACC+GGG | + | chr1.3:28045172-28045191 | MS.gene64270:CDS | 40.0% | |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | - | chr1.3:28044062-28044081 | None:intergenic | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | - | chr1.3:28044428-28044447 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | + | chr1.3:28044440-28044459 | MS.gene64270:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | + | chr1.3:28044780-28044799 | MS.gene64270:CDS | 40.0% |
| ! | TCTCAGAGTGCTTCTCTTTA+AGG | - | chr1.3:28044082-28044101 | None:intergenic | 40.0% |
| ! | TGATAAGGGTGCACATTGTT+AGG | + | chr1.3:28045825-28045844 | MS.gene64270:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | + | chr1.3:28044842-28044861 | MS.gene64270:CDS | 40.0% |
| ! | TGATGATGATGATGCTGAAG+AGG | + | chr1.3:28044779-28044798 | MS.gene64270:CDS | 40.0% |
| !! | AACAATGCAAAGGAGTATCC+TGG | + | chr1.3:28044041-28044060 | MS.gene64270:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | + | chr1.3:28044454-28044473 | MS.gene64270:CDS | 40.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | + | chr1.3:28045706-28045725 | MS.gene64270:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1.3:28045829-28045848 | MS.gene64270:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | + | chr1.3:28044458-28044477 | MS.gene64270:CDS | 45.0% |
| ! | GGTGATGATAGTGACGATGA+GGG | + | chr1.3:28044801-28044820 | MS.gene64270:CDS | 45.0% |
| ! | GTATGTCTTGTGCTGATCTG+TGG | - | chr1.3:28045662-28045681 | None:intergenic | 45.0% |
| ! | TTTTCCTCCTCATCCATCAC+CGG | - | chr1.3:28044696-28044715 | None:intergenic | 45.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | + | chr1.3:28044457-28044476 | MS.gene64270:CDS | 45.0% |
| !! | AGAGAAGCACTCTGAGAGAA+TGG | + | chr1.3:28044085-28044104 | MS.gene64270:CDS | 45.0% |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1.3:28045473-28045492 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1.3:28045470-28045489 | MS.gene64270:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | + | chr1.3:28044729-28044748 | MS.gene64270:CDS | 50.0% | |
| GGAAGATGAGGAAGAGGAAG+AGG | + | chr1.3:28044725-28044744 | MS.gene64270:CDS | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | + | chr1.3:28044680-28044699 | MS.gene64270:CDS | 50.0% | |
| ! | GACGATGAGGGTGATGATGA+GGG | + | chr1.3:28044813-28044832 | MS.gene64270:CDS | 50.0% |
| ! | GGGTGATGATAGTGACGATG+AGG | + | chr1.3:28044800-28044819 | MS.gene64270:CDS | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | + | chr1.3:28044812-28044831 | MS.gene64270:CDS | 50.0% |
| !! | AAAGATGCCGGTGATGGATG+AGG | + | chr1.3:28044686-28044705 | MS.gene64270:CDS | 50.0% |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | + | chr1.3:28045713-28045732 | MS.gene64270:CDS | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | + | chr1.3:28045714-28045733 | MS.gene64270:CDS | 55.0% |
| GACATCGGAAGCAGCTCTGC+AGG | + | chr1.3:28045121-28045140 | MS.gene64270:CDS | 60.0% | |
| GCCACCCTAGCACCAAGACT+CGG | - | chr1.3:28045721-28045740 | None:intergenic | 60.0% | |
| !! | GATGCCGGTGATGGATGAGG+AGG | + | chr1.3:28044689-28044708 | MS.gene64270:CDS | 60.0% |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | + | chr1.3:28045717-28045736 | MS.gene64270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 28044035 | 28045865 | 28044035 | ID=MS.gene64270 |
| chr1.3 | mRNA | 28044035 | 28045865 | 28044035 | ID=MS.gene64270.t1;Parent=MS.gene64270 |
| chr1.3 | exon | 28044035 | 28044106 | 28044035 | ID=MS.gene64270.t1.exon1;Parent=MS.gene64270.t1 |
| chr1.3 | CDS | 28044035 | 28044106 | 28044035 | ID=cds.MS.gene64270.t1;Parent=MS.gene64270.t1 |
| chr1.3 | exon | 28044435 | 28044936 | 28044435 | ID=MS.gene64270.t1.exon2;Parent=MS.gene64270.t1 |
| chr1.3 | CDS | 28044435 | 28044936 | 28044435 | ID=cds.MS.gene64270.t1;Parent=MS.gene64270.t1 |
| chr1.3 | exon | 28045119 | 28045243 | 28045119 | ID=MS.gene64270.t1.exon3;Parent=MS.gene64270.t1 |
| chr1.3 | CDS | 28045119 | 28045243 | 28045119 | ID=cds.MS.gene64270.t1;Parent=MS.gene64270.t1 |
| chr1.3 | exon | 28045414 | 28045491 | 28045414 | ID=MS.gene64270.t1.exon4;Parent=MS.gene64270.t1 |
| chr1.3 | CDS | 28045414 | 28045491 | 28045414 | ID=cds.MS.gene64270.t1;Parent=MS.gene64270.t1 |
| chr1.3 | exon | 28045617 | 28045865 | 28045617 | ID=MS.gene64270.t1.exon5;Parent=MS.gene64270.t1 |
| chr1.3 | CDS | 28045617 | 28045865 | 28045617 | ID=cds.MS.gene64270.t1;Parent=MS.gene64270.t1 |
| Gene Sequence |
| Protein sequence |
