Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64271.t1 | KEH41184.1 | 77.9 | 335 | 58 | 1 | 1 | 319 | 1 | 335 | 8.10E-117 | 430.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64271.t1 | Q9M8K2 | 29.0 | 314 | 208 | 5 | 9 | 318 | 23 | 325 | 2.1e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64271.t1 | A0A072VGK8 | 77.9 | 335 | 58 | 1 | 1 | 319 | 1 | 335 | 5.8e-117 | 430.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64271.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64271.t1 | MTR_1g046340 | 75.740 | 338 | 60 | 2 | 1 | 319 | 1 | 335 | 2.93e-175 | 488 |
| MS.gene64271.t1 | MTR_1g046320 | 60.961 | 333 | 115 | 2 | 1 | 318 | 1 | 333 | 1.56e-126 | 365 |
| MS.gene64271.t1 | MTR_1g046200 | 70.833 | 144 | 42 | 0 | 175 | 318 | 180 | 323 | 9.02e-71 | 223 |
| MS.gene64271.t1 | MTR_3g088515 | 56.170 | 235 | 77 | 3 | 2 | 212 | 13 | 245 | 4.69e-66 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64271.t1 | AT3G06160 | 24.768 | 323 | 212 | 9 | 8 | 318 | 7 | 310 | 7.55e-20 | 88.6 |
| MS.gene64271.t1 | AT3G06160 | 24.768 | 323 | 212 | 9 | 8 | 318 | 7 | 310 | 7.55e-20 | 88.6 |
| MS.gene64271.t1 | AT3G06160 | 24.768 | 323 | 212 | 9 | 8 | 318 | 7 | 310 | 7.55e-20 | 88.6 |
| MS.gene64271.t1 | AT3G06160 | 24.768 | 323 | 212 | 9 | 8 | 318 | 22 | 325 | 1.15e-19 | 88.2 |
| MS.gene64271.t1 | AT3G06160 | 24.768 | 323 | 212 | 9 | 8 | 318 | 66 | 369 | 1.59e-19 | 88.6 |
| MS.gene64271.t1 | AT3G53310 | 26.183 | 317 | 186 | 11 | 8 | 317 | 8 | 283 | 6.81e-18 | 82.8 |
| MS.gene64271.t1 | AT5G57720 | 24.688 | 320 | 201 | 11 | 8 | 317 | 10 | 299 | 1.46e-14 | 73.6 |
| MS.gene64271.t1 | AT5G60130 | 23.353 | 334 | 209 | 8 | 9 | 316 | 12 | 324 | 2.89e-14 | 72.8 |
| MS.gene64271.t1 | AT5G60130 | 23.353 | 334 | 209 | 8 | 9 | 316 | 9 | 321 | 3.35e-14 | 72.4 |
| MS.gene64271.t1 | AT5G60130 | 24.204 | 314 | 205 | 7 | 9 | 316 | 12 | 298 | 2.65e-13 | 69.7 |
| MS.gene64271.t1 | AT5G60140 | 24.629 | 337 | 198 | 9 | 11 | 316 | 15 | 326 | 1.36e-12 | 67.8 |
Find 63 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1.3:-28068577 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.301862 | 1.3:+28069142 | MS.gene64271:CDS |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1.3:-28067596 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+AGG | 0.311521 | 1.3:+28069280 | MS.gene64271:CDS |
| GCATAGAAGTATGGATTTCC+AGG | 0.335888 | 1.3:-28068622 | None:intergenic |
| CACTTCCTCTATGATCTCTT+AGG | 0.351749 | 1.3:-28067880 | None:intergenic |
| AAGGAAGTCATTGTTCTCTA+AGG | 0.370651 | 1.3:-28067981 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1.3:+28068654 | MS.gene64271:CDS |
| AGAGGATGAGGAAGAGGAAG+AGG | 0.437743 | 1.3:+28068111 | MS.gene64271:CDS |
| ACCTTGCAGTGGCAACATAC+AGG | 0.439645 | 1.3:-28068926 | None:intergenic |
| TTCAAAACAAAGGCTGTTGA+AGG | 0.442905 | 1.3:+28067850 | MS.gene64271:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1.3:-28069097 | None:intergenic |
| GCTAAGGGTGCACGTTGTTA+GGG | 0.450128 | 1.3:+28069281 | MS.gene64271:CDS |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1.3:+28069265 | MS.gene64271:CDS |
| AATAAAGTTTGTTGCCGATA+GGG | 0.473847 | 1.3:-28067922 | None:intergenic |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1.3:-28067595 | None:intergenic |
| GAGGAAGAGGAAGAGGAAGA+TGG | 0.482567 | 1.3:+28068118 | MS.gene64271:CDS |
| CATGTCAAAGTGCGCCCTAT+CGG | 0.483624 | 1.3:+28067908 | MS.gene64271:CDS |
| AAGAAGTTAGGGAACTCCTT+GGG | 0.485576 | 1.3:-28067584 | None:intergenic |
| TACGATAGAGGATGAGGAAG+AGG | 0.486893 | 1.3:+28068105 | MS.gene64271:CDS |
| TCACAGGATGTTCAAAGTAA+TGG | 0.491911 | 1.3:+28069066 | MS.gene64271:intron |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.493074 | 1.3:-28067585 | None:intergenic |
| CGTTGATGAGGAGGAGGATG+AGG | 0.496617 | 1.3:+28068210 | MS.gene64271:CDS |
| GGAAAATACTAATACGATAG+AGG | 0.497125 | 1.3:+28068093 | MS.gene64271:CDS |
| CTCAATGTGTCAAAAGATGA+AGG | 0.502234 | 1.3:+28068057 | MS.gene64271:CDS |
| GAGATCATAGAGGAAGTGAT+TGG | 0.510228 | 1.3:+28067885 | MS.gene64271:CDS |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1.3:+28067622 | MS.gene64271:CDS |
| GACACATTGAGGATAGTTCA+AGG | 0.516055 | 1.3:-28068045 | None:intergenic |
| GTGTCAAAAGATGAAGGTAA+TGG | 0.520383 | 1.3:+28068063 | MS.gene64271:CDS |
| TACTAATACGATAGAGGATG+AGG | 0.521923 | 1.3:+28068099 | MS.gene64271:CDS |
| CCTTGCAGTGGCAACATACA+GGG | 0.522775 | 1.3:-28068925 | None:intergenic |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1.3:-28067824 | None:intergenic |
| CCCTGTATGTTGCCACTGCA+AGG | 0.533732 | 1.3:+28068925 | MS.gene64271:CDS |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1.3:+28069172 | MS.gene64271:CDS |
| CGATGACGTTGATGAGGAGG+AGG | 0.543560 | 1.3:+28068204 | MS.gene64271:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1.3:-28069173 | None:intergenic |
| GCTGAAATGTATATTCAGCC+TGG | 0.549138 | 1.3:+28068604 | MS.gene64271:CDS |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1.3:-28067823 | None:intergenic |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 1.3:-28068000 | None:intergenic |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1.3:-28067616 | None:intergenic |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.559250 | 1.3:-28067923 | None:intergenic |
| TGATGATTACACAATGATAG+AGG | 0.564788 | 1.3:+28068159 | MS.gene64271:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1.3:+28068871 | MS.gene64271:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1.3:+28069243 | MS.gene64271:CDS |
| ATGATAGAGGAAGAAGAAGA+TGG | 0.574971 | 1.3:+28068172 | MS.gene64271:CDS |
| GAAATACGTAAATGGAGAGA+TGG | 0.580499 | 1.3:+28069150 | MS.gene64271:CDS |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1.3:+28069266 | MS.gene64271:CDS |
| ATGGTAGATGAAGAAGAAGA+TGG | 0.595678 | 1.3:+28068265 | MS.gene64271:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.597947 | 1.3:+28067840 | MS.gene64271:CDS |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1.3:+28069173 | MS.gene64271:CDS |
| ACAAAACATATTGAAAAGAG+AGG | 0.601836 | 1.3:+28069126 | MS.gene64271:CDS |
| TCTGCTGCAGCTTATCCCAA+CGG | 0.606121 | 1.3:+28067808 | MS.gene64271:intron |
| GATGAAGGTAATGGACGAGG+AGG | 0.612327 | 1.3:+28068072 | MS.gene64271:CDS |
| TAACGATGACGTTGATGAGG+AGG | 0.620129 | 1.3:+28068201 | MS.gene64271:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1.3:-28068937 | None:intergenic |
| TTTATCCTAAGAGATCATAG+AGG | 0.632452 | 1.3:+28067875 | MS.gene64271:CDS |
| GATGGCCGAGTATTTGTGCG+AGG | 0.647129 | 1.3:+28069168 | MS.gene64271:CDS |
| AAAGATGAAGGTAATGGACG+AGG | 0.655125 | 1.3:+28068069 | MS.gene64271:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.660319 | 1.3:+28069169 | MS.gene64271:CDS |
| AATTATGACTAACATTCCCA+AGG | 0.667042 | 1.3:+28067568 | None:intergenic |
| TGATAACGATGACGTTGATG+AGG | 0.693089 | 1.3:+28068198 | MS.gene64271:CDS |
| CTTGCAGTGGCAACATACAG+GGG | 0.700487 | 1.3:-28068924 | None:intergenic |
| TGATGATGATGATTACGCAA+TGG | 0.731158 | 1.3:+28068246 | MS.gene64271:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | + | chr1.3:28068335-28068354 | MS.gene64271:intron | 10.0% |
| !! | TAATGTATAATAATATTTGG+AGG | - | chr1.3:28067674-28067693 | None:intergenic | 15.0% |
| !! | AAAAACTAAACCAATATGTT+TGG | - | chr1.3:28068667-28068686 | None:intergenic | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | + | chr1.3:28069266-28069285 | MS.gene64271:CDS | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | + | chr1.3:28068523-28068542 | MS.gene64271:intron | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | + | chr1.3:28067932-28067951 | MS.gene64271:CDS | 20.0% |
| !!! | ACAATAAAACATACATGTTT+TGG | - | chr1.3:28068419-28068438 | None:intergenic | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | + | chr1.3:28068530-28068549 | MS.gene64271:intron | 20.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | + | chr1.3:28069126-28069145 | MS.gene64271:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | - | chr1.3:28068580-28068599 | None:intergenic | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | - | chr1.3:28068531-28068550 | None:intergenic | 25.0% |
| ! | GAAAAAAGGAATAAAAGAGT+TGG | + | chr1.3:28068349-28068368 | MS.gene64271:intron | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | + | chr1.3:28069265-28069284 | MS.gene64271:CDS | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | - | chr1.3:28068003-28068022 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | + | chr1.3:28068772-28068791 | MS.gene64271:intron | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | + | chr1.3:28067936-28067955 | MS.gene64271:CDS | 25.0% |
| !!! | ATAAAACATACATGTTTTGG+AGG | - | chr1.3:28068416-28068435 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | + | chr1.3:28068529-28068548 | MS.gene64271:intron | 25.0% |
| !!! | GAAGTGAAGTACAATTTTTT+TGG | + | chr1.3:28068993-28069012 | MS.gene64271:intron | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | - | chr1.3:28068634-28068653 | None:intergenic | 25.0% |
| ATAACAATTATACCTTGCAG+TGG | - | chr1.3:28068940-28068959 | None:intergenic | 30.0% | |
| GGAAAATACTAATACGATAG+AGG | + | chr1.3:28068093-28068112 | MS.gene64271:CDS | 30.0% | |
| TATTTCGAAGAATGTCATCA+AGG | + | chr1.3:28068871-28068890 | MS.gene64271:CDS | 30.0% | |
| TGATGATTACACAATGATAG+AGG | + | chr1.3:28068159-28068178 | MS.gene64271:CDS | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | + | chr1.3:28067875-28067894 | MS.gene64271:CDS | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | - | chr1.3:28069117-28069136 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | - | chr1.3:28067926-28067945 | None:intergenic | 30.0% |
| !! | AATAAAGTTTGTTGCCGATA+GGG | - | chr1.3:28067925-28067944 | None:intergenic | 30.0% |
| AAGGAAGTCATTGTTCTCTA+AGG | - | chr1.3:28067984-28068003 | None:intergenic | 35.0% | |
| AAGGAATAAAAGAGTTGGCA+AGG | + | chr1.3:28068354-28068373 | MS.gene64271:intron | 35.0% | |
| ACAGAAAGGATGAATACAAC+TGG | - | chr1.3:28069044-28069063 | None:intergenic | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr1.3:28069142-28069161 | MS.gene64271:CDS | 35.0% | |
| AGCTGATGCTTTCAAAACAA+AGG | + | chr1.3:28067840-28067859 | MS.gene64271:CDS | 35.0% | |
| AGGAATAAAAGAGTTGGCAA+GGG | + | chr1.3:28068355-28068374 | MS.gene64271:intron | 35.0% | |
| ATGATAGAGGAAGAAGAAGA+TGG | + | chr1.3:28068172-28068191 | MS.gene64271:CDS | 35.0% | |
| ATGGTAGATGAAGAAGAAGA+TGG | + | chr1.3:28068265-28068284 | MS.gene64271:CDS | 35.0% | |
| CTCAATGTGTCAAAAGATGA+AGG | + | chr1.3:28068057-28068076 | MS.gene64271:CDS | 35.0% | |
| GAAATACGTAAATGGAGAGA+TGG | + | chr1.3:28069150-28069169 | MS.gene64271:CDS | 35.0% | |
| GTGTCAAAAGATGAAGGTAA+TGG | + | chr1.3:28068063-28068082 | MS.gene64271:CDS | 35.0% | |
| TACTAATACGATAGAGGATG+AGG | + | chr1.3:28068099-28068118 | MS.gene64271:CDS | 35.0% | |
| TCACAGGATGTTCAAAGTAA+TGG | + | chr1.3:28069066-28069085 | MS.gene64271:intron | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | + | chr1.3:28068654-28068673 | MS.gene64271:CDS | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | + | chr1.3:28067850-28067869 | MS.gene64271:CDS | 35.0% | |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | - | chr1.3:28067599-28067618 | None:intergenic | 35.0% |
| ! | CTTCATCTTTTGACACATTG+AGG | - | chr1.3:28068059-28068078 | None:intergenic | 35.0% |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | - | chr1.3:28067598-28067617 | None:intergenic | 35.0% |
| ! | TGATGATGATGATTACGCAA+TGG | + | chr1.3:28068246-28068265 | MS.gene64271:CDS | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | + | chr1.3:28067622-28067641 | MS.gene64271:CDS | 35.0% |
| AACATCCTGTGATGACAGAA+AGG | - | chr1.3:28069058-28069077 | None:intergenic | 40.0% | |
| AAGAAGTTAGGGAACTCCTT+GGG | - | chr1.3:28067587-28067606 | None:intergenic | 40.0% | |
| CACTTCCTCTATGATCTCTT+AGG | - | chr1.3:28067883-28067902 | None:intergenic | 40.0% | |
| GACACATTGAGGATAGTTCA+AGG | - | chr1.3:28068048-28068067 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | + | chr1.3:28067885-28067904 | MS.gene64271:CDS | 40.0% | |
| GCTGAAATGTATATTCAGCC+TGG | + | chr1.3:28068604-28068623 | MS.gene64271:CDS | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | + | chr1.3:28069243-28069262 | MS.gene64271:CDS | 40.0% | |
| TTCATCCTTTCTGTCATCAC+AGG | + | chr1.3:28069050-28069069 | MS.gene64271:intron | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | - | chr1.3:28069100-28069119 | None:intergenic | 40.0% | |
| ! | GAAGATGGTGATGATAACGA+TGG | + | chr1.3:28068187-28068206 | MS.gene64271:CDS | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+AGG | - | chr1.3:28068625-28068644 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+GGG | + | chr1.3:28068778-28068797 | MS.gene64271:intron | 40.0% |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | - | chr1.3:28067619-28067638 | None:intergenic | 40.0% |
| ! | TGATAACGATGACGTTGATG+AGG | + | chr1.3:28068198-28068217 | MS.gene64271:CDS | 40.0% |
| ! | TTAGTCCATTTTCTTAGGCC+TGG | + | chr1.3:28068777-28068796 | MS.gene64271:intron | 40.0% |
| !! | AAAGATGAAGGTAATGGACG+AGG | + | chr1.3:28068069-28068088 | MS.gene64271:CDS | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | + | chr1.3:28068538-28068557 | MS.gene64271:intron | 40.0% |
| !! | TGATAACGATGGTGTTGATG+AGG | + | chr1.3:28068291-28068310 | MS.gene64271:intron | 40.0% |
| ATCAGCTTCACAAAAGCCGT+TGG | - | chr1.3:28067827-28067846 | None:intergenic | 45.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | - | chr1.3:28067588-28067607 | None:intergenic | 45.0% | |
| TACGATAGAGGATGAGGAAG+AGG | + | chr1.3:28068105-28068124 | MS.gene64271:CDS | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | - | chr1.3:28067826-28067845 | None:intergenic | 45.0% | |
| ! | AGTCCATTTTCTTAGGCCTG+GGG | + | chr1.3:28068779-28068798 | MS.gene64271:intron | 45.0% |
| ! | TAACGATGACGTTGATGAGG+AGG | + | chr1.3:28068201-28068220 | MS.gene64271:CDS | 45.0% |
| !! | TAACGATGGTGTTGATGAGG+AGG | + | chr1.3:28068294-28068313 | MS.gene64271:intron | 45.0% |
| !! | AAATAATGTATAATAATATT+TGG | - | chr1.3:28067677-28067696 | None:intergenic | 5.0% |
| ACCAATTTCATCCTCACCCC+AGG | - | chr1.3:28068798-28068817 | None:intergenic | 50.0% | |
| ACCTTGCAGTGGCAACATAC+AGG | - | chr1.3:28068929-28068948 | None:intergenic | 50.0% | |
| AGAGGATGAGGAAGAGGAAG+AGG | + | chr1.3:28068111-28068130 | MS.gene64271:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | + | chr1.3:28069169-28069188 | MS.gene64271:CDS | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | + | chr1.3:28067908-28067927 | MS.gene64271:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+GGG | - | chr1.3:28068928-28068947 | None:intergenic | 50.0% | |
| CTTGCAGTGGCAACATACAG+GGG | - | chr1.3:28068927-28068946 | None:intergenic | 50.0% | |
| GAGGAAGAGGAAGAGGAAGA+TGG | + | chr1.3:28068118-28068137 | MS.gene64271:CDS | 50.0% | |
| TCACCCCAGGCCTAAGAAAA+TGG | - | chr1.3:28068785-28068804 | None:intergenic | 50.0% | |
| TCTGCTGCAGCTTATCCCAA+CGG | + | chr1.3:28067808-28067827 | MS.gene64271:intron | 50.0% | |
| ! | ATTTTCTTAGGCCTGGGGTG+AGG | + | chr1.3:28068784-28068803 | MS.gene64271:intron | 50.0% |
| ! | GCTAAGGGTGCACGTTGTTA+GGG | + | chr1.3:28069281-28069300 | MS.gene64271:CDS | 50.0% |
| ! | TGCTAAGGGTGCACGTTGTT+AGG | + | chr1.3:28069280-28069299 | MS.gene64271:CDS | 50.0% |
| !! | GATGAAGGTAATGGACGAGG+AGG | + | chr1.3:28068072-28068091 | MS.gene64271:CDS | 50.0% |
| CCCACCCTCGCACAAATACT+CGG | - | chr1.3:28069176-28069195 | None:intergenic | 55.0% | |
| CCCTGTATGTTGCCACTGCA+AGG | + | chr1.3:28068925-28068944 | MS.gene64271:CDS | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | + | chr1.3:28069173-28069192 | MS.gene64271:CDS | 55.0% | |
| GATGGCCGAGTATTTGTGCG+AGG | + | chr1.3:28069168-28069187 | MS.gene64271:CDS | 55.0% | |
| GCCTGGGGTGAGGATGAAAT+TGG | + | chr1.3:28068794-28068813 | MS.gene64271:intron | 55.0% | |
| ! | CGATGACGTTGATGAGGAGG+AGG | + | chr1.3:28068204-28068223 | MS.gene64271:CDS | 55.0% |
| ! | CGTTGATGAGGAGGAGGATG+AGG | + | chr1.3:28068210-28068229 | MS.gene64271:CDS | 55.0% |
| ! | TGTTGATGAGGAGGAGGACG+AGG | + | chr1.3:28068303-28068322 | MS.gene64271:intron | 55.0% |
| !! | CGATGGTGTTGATGAGGAGG+AGG | + | chr1.3:28068297-28068316 | MS.gene64271:intron | 55.0% |
| GCCGAGTATTTGTGCGAGGG+TGG | + | chr1.3:28069172-28069191 | MS.gene64271:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 28067572 | 28069311 | 28067572 | ID=MS.gene64271 |
| chr1.3 | mRNA | 28067572 | 28069311 | 28067572 | ID=MS.gene64271.t1;Parent=MS.gene64271 |
| chr1.3 | exon | 28067572 | 28067643 | 28067572 | ID=MS.gene64271.t1.exon1;Parent=MS.gene64271.t1 |
| chr1.3 | CDS | 28067572 | 28067643 | 28067572 | ID=cds.MS.gene64271.t1;Parent=MS.gene64271.t1 |
| chr1.3 | exon | 28067818 | 28068286 | 28067818 | ID=MS.gene64271.t1.exon2;Parent=MS.gene64271.t1 |
| chr1.3 | CDS | 28067818 | 28068286 | 28067818 | ID=cds.MS.gene64271.t1;Parent=MS.gene64271.t1 |
| chr1.3 | exon | 28068575 | 28068675 | 28068575 | ID=MS.gene64271.t1.exon3;Parent=MS.gene64271.t1 |
| chr1.3 | CDS | 28068575 | 28068675 | 28068575 | ID=cds.MS.gene64271.t1;Parent=MS.gene64271.t1 |
| chr1.3 | exon | 28068869 | 28068946 | 28068869 | ID=MS.gene64271.t1.exon4;Parent=MS.gene64271.t1 |
| chr1.3 | CDS | 28068869 | 28068946 | 28068869 | ID=cds.MS.gene64271.t1;Parent=MS.gene64271.t1 |
| chr1.3 | exon | 28069072 | 28069311 | 28069072 | ID=MS.gene64271.t1.exon5;Parent=MS.gene64271.t1 |
| chr1.3 | CDS | 28069072 | 28069311 | 28069072 | ID=cds.MS.gene64271.t1;Parent=MS.gene64271.t1 |
| Gene Sequence |
| Protein sequence |
