AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64293

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64293.t1 MTR_1g046680 98.770 244 3 0 1 244 1 244 0.0 498
MS.gene64293.t1 MTR_5g007600 71.489 235 52 3 1 235 1 220 7.94e-105 306
MS.gene64293.t1 MTR_5g007600 76.147 109 26 0 136 244 223 331 1.09e-56 184
MS.gene64293.t1 MTR_8g013950 47.340 188 84 7 63 241 114 295 3.84e-39 139
MS.gene64293.t1 MTR_8g076340 72.000 75 21 0 170 244 216 290 5.15e-36 129
MS.gene64293.t1 MTR_3g109760 44.554 202 69 8 63 241 95 276 2.14e-35 128
MS.gene64293.t1 MTR_2g094600 46.584 161 54 4 99 236 129 280 2.14e-35 128
MS.gene64293.t1 MTR_1g006650 43.810 210 71 7 63 241 110 303 5.96e-35 127
MS.gene64293.t1 MTR_3g117380 36.260 262 122 9 6 241 56 298 1.44e-34 126
MS.gene64293.t1 MTR_4g071590 50.000 140 44 5 124 239 141 278 2.77e-33 122
MS.gene64293.t1 MTR_4g471590 50.000 140 44 5 124 239 141 278 2.77e-33 122
MS.gene64293.t1 MTR_5g021340 71.233 73 21 0 172 244 300 372 3.24e-33 124
MS.gene64293.t1 MTR_6g032830 76.471 68 16 0 171 238 191 258 6.94e-33 120
MS.gene64293.t1 MTR_1g094930 70.130 77 21 1 160 236 137 211 7.39e-33 119
MS.gene64293.t1 MTR_7g085410 74.648 71 18 0 166 236 182 252 8.44e-33 120
MS.gene64293.t1 MTR_1g094930 70.130 77 21 1 160 236 232 306 2.79e-32 120
MS.gene64293.t1 MTR_4g058910 74.627 67 17 0 172 238 314 380 1.25e-31 120
MS.gene64293.t1 MTR_1g116010 71.642 67 19 0 170 236 162 228 1.76e-31 116
MS.gene64293.t1 MTR_7g446110 55.224 67 28 1 172 238 187 251 4.92e-19 83.6
MS.gene64293.t1 MTR_7g445980 54.286 70 29 2 170 238 31 98 6.04e-18 76.6
MS.gene64293.t1 MTR_7g445950 47.126 87 44 2 149 233 95 181 1.22e-17 78.2
MS.gene64293.t1 MTR_7g446070 46.739 92 45 3 149 238 107 196 2.45e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64293.t1 AT3G24050 80.000 75 15 0 170 244 192 266 2.39e-40 140
MS.gene64293.t1 AT4G32890 39.636 275 98 11 7 241 20 266 6.27e-38 135
MS.gene64293.t1 AT4G36240 38.340 253 104 6 6 239 12 231 6.77e-36 127
MS.gene64293.t1 AT4G34680 46.479 142 63 3 111 242 112 250 4.77e-35 126
MS.gene64293.t1 AT4G34680 46.479 142 63 3 111 242 112 250 4.77e-35 126
MS.gene64293.t1 AT5G66320 79.412 68 14 0 172 239 249 316 8.54e-35 127
MS.gene64293.t1 AT5G66320 79.412 68 14 0 172 239 249 316 8.54e-35 127
MS.gene64293.t1 AT5G25830 77.143 70 16 0 172 241 219 288 1.19e-33 124
MS.gene64293.t1 AT3G51080 72.603 73 20 0 172 244 221 293 2.66e-33 122
MS.gene64293.t1 AT3G60530 75.362 69 17 0 171 239 157 225 2.79e-33 120
MS.gene64293.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene64293.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene64293.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene64293.t1 AT2G45050 75.000 68 17 0 172 239 179 246 3.73e-32 118
MS.gene64293.t1 AT1G08000 64.634 82 29 0 157 238 203 284 6.80e-32 119
MS.gene64293.t1 AT1G08000 64.634 82 29 0 157 238 203 284 6.80e-32 119
MS.gene64293.t1 AT3G54810 75.000 68 17 0 172 239 229 296 6.38e-31 117
MS.gene64293.t1 AT3G54810 75.000 68 17 0 172 239 229 296 6.38e-31 117
MS.gene64293.t1 AT3G45170 60.294 68 27 0 172 239 115 182 2.32e-27 104
MS.gene64293.t1 AT2G28340 66.667 63 21 0 174 236 193 255 9.56e-26 102

Find 84 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTCTCTTTGGAAGTTT+TGG 0.158917 1.3:+28341967 None:intergenic
CTTGTGCTGTTCTCGAGCTT+TGG 0.240759 1.3:+28342148 None:intergenic
TTGTGCTGTTCTCGAGCTTT+GGG 0.269770 1.3:+28342149 None:intergenic
GGTTTGTTTCACTTTCTCTT+TGG 0.274207 1.3:+28341958 None:intergenic
AGTGAAGGAAAGGCTTTCTT+AGG 0.280723 1.3:+28342848 None:intergenic
GTCCAACAAAGATGCATTTC+CGG 0.285678 1.3:-28342236 MS.gene64293:CDS
CTATTTGCAGGACGGTATTC+AGG 0.302785 1.3:+28341809 None:intergenic
CGAAAAGTTGGGCTATTTGC+AGG 0.311001 1.3:+28341797 None:intergenic
CATGCATTACAAAGTGTCTT+TGG 0.315428 1.3:+28341863 None:intergenic
CAAAGTGTCTTTGGACCATT+TGG 0.337970 1.3:+28341872 None:intergenic
GTGAAACAAACCCCAACTAT+TGG 0.348258 1.3:-28341947 MS.gene64293:CDS
GACATTTCCTCCCAATAGTT+GGG 0.350865 1.3:+28341936 None:intergenic
GAAGGTGGATCACTGCATTC+TGG 0.356189 1.3:+28342821 None:intergenic
GTTGTTTCCACGGGAATTGT+AGG 0.366200 1.3:+28341996 None:intergenic
TGGTTCTGTGGACGACCTCT+TGG 0.388206 1.3:-28342912 MS.gene64293:CDS
GATGAGGAAGCAGAAGGGAA+TGG 0.399465 1.3:-28341735 MS.gene64293:CDS
TTTGTAATGCATGTGGGGTT+AGG 0.415099 1.3:-28341853 MS.gene64293:CDS
ACTTACAGAAAGTGAATTGA+TGG 0.418526 1.3:+28342772 None:intergenic
CCACGGGAATTGTAGGTTTG+AGG 0.425374 1.3:+28342003 None:intergenic
AAGCAGAAGGGAATGGGAAC+GGG 0.428545 1.3:-28341728 MS.gene64293:CDS
TGTGATTGTAGCCACTTAAG+AGG 0.429240 1.3:+28342089 None:intergenic
TGAATTGTCGTGTATTCAAC+CGG 0.432782 1.3:-28342197 MS.gene64293:CDS
TGACATTTCCTCCCAATAGT+TGG 0.437003 1.3:+28341935 None:intergenic
TGAAACAAACCCCAACTATT+GGG 0.437235 1.3:-28341946 MS.gene64293:CDS
AGCCGGAAATGCATCTTTGT+TGG 0.438765 1.3:+28342234 None:intergenic
TGCATGTCACTGCGAAAAGT+TGG 0.440834 1.3:+28341785 None:intergenic
ATTTGATGCTTCAAAAGATC+CGG 0.450692 1.3:+28342178 None:intergenic
GACTTGCTCCGTGCACGGAC+AGG 0.458205 1.3:+28342058 None:intergenic
TCAACAAATGTTTCAACAGC+CGG 0.462728 1.3:+28342217 None:intergenic
TTCGCTCAATCCATTGGCCC+TGG 0.469600 1.3:-28342801 MS.gene64293:CDS
CCAGGAGGAGGTTGCAGAAG+AGG 0.477241 1.3:-28342272 MS.gene64293:intron
GTGGAGATGAGGAAGCAGAA+GGG 0.478182 1.3:-28341740 MS.gene64293:CDS
TTGCAGAAGAGGAGCTTGAA+TGG 0.482772 1.3:-28342261 MS.gene64293:CDS
ATGAGGAAGCAGAAGGGAAT+GGG 0.486460 1.3:-28341734 MS.gene64293:CDS
TTGGTACTCGGTTGTTTCCA+CGG 0.494137 1.3:+28341986 None:intergenic
AACAGCATTACCCTCTTAAG+TGG 0.500575 1.3:-28342100 MS.gene64293:CDS
GCATGTCACTGCGAAAAGTT+GGG 0.502991 1.3:+28341786 None:intergenic
TGGTACTCGGTTGTTTCCAC+GGG 0.505676 1.3:+28341987 None:intergenic
CAATGGCGTGCAGGTCCAAA+TGG 0.508669 1.3:-28341887 MS.gene64293:CDS
TTGGATTTCTCATCTGACAT+AGG 0.508816 1.3:-28342893 MS.gene64293:CDS
AGTGGAGATGAGGAAGCAGA+AGG 0.514467 1.3:-28341741 MS.gene64293:CDS
TTCTGGTTTGAGTGAAGGAA+AGG 0.515866 1.3:+28342838 None:intergenic
TGTGGGGTTAGGTATAAGTC+TGG 0.520333 1.3:-28341842 MS.gene64293:CDS
TCCACCTTCGCTCAATCCAT+TGG 0.521499 1.3:-28342807 MS.gene64293:CDS
GATGGAGGCCCTTGGTTCTG+TGG 0.522422 1.3:-28342924 MS.gene64293:CDS
GTGAATTGATGGGATCATCC+AGG 0.528433 1.3:+28342783 None:intergenic
ATGGGATCATCCAGGGCCAA+TGG 0.530010 1.3:+28342791 None:intergenic
CTGCATTCTGGTTTGAGTGA+AGG 0.532294 1.3:+28342833 None:intergenic
TCATCTCCACTACTTTCCTG+TGG 0.533667 1.3:+28341753 None:intergenic
TCTCGTAGCAAGCCTCGCCT+TGG 0.534627 1.3:-28342037 MS.gene64293:CDS
GATACTCCACAATGGCGTGC+AGG 0.539263 1.3:-28341896 MS.gene64293:CDS
TTGAGGCATCAGCAAGGCCA+AGG 0.541565 1.3:+28342020 None:intergenic
GAAGCAGAAGGGAATGGGAA+CGG 0.544276 1.3:-28341729 MS.gene64293:CDS
GCCAATGGATTGAGCGAAGG+TGG 0.546210 1.3:+28342806 None:intergenic
ACTTAAGAGGGTAATGCTGT+TGG 0.550014 1.3:+28342102 None:intergenic
CATCTCCACTACTTTCCTGT+GGG 0.557649 1.3:+28341754 None:intergenic
ACATTTCCTCCCAATAGTTG+GGG 0.567915 1.3:+28341937 None:intergenic
TGAAGTTCCCTGTCCGTGCA+CGG 0.571256 1.3:-28342066 MS.gene64293:CDS
TTTGGACCTGCACGCCATTG+TGG 0.572595 1.3:+28341890 None:intergenic
ACTTGCTCCGTGCACGGACA+GGG 0.574860 1.3:+28342059 None:intergenic
TACGAGACTTGCTCCGTGCA+CGG 0.578328 1.3:+28342053 None:intergenic
ACAGGAAAGTAGTGGAGATG+AGG 0.582547 1.3:-28341751 MS.gene64293:CDS
TGTGCTGTTCTCGAGCTTTG+GGG 0.589584 1.3:+28342150 None:intergenic
TGAATTGATGGGATCATCCA+GGG 0.600445 1.3:+28342784 None:intergenic
GCATCAGCAAGGCCAAGGCG+AGG 0.601336 1.3:+28342025 None:intergenic
GACACTTTGTAATGCATGTG+GGG 0.601729 1.3:-28341858 MS.gene64293:CDS
AAGACACTTTGTAATGCATG+TGG 0.602236 1.3:-28341860 MS.gene64293:CDS
TAATTCCCACAGGAAAGTAG+TGG 0.604924 1.3:-28341759 MS.gene64293:CDS
GAGGTCGTCCACAGAACCAA+GGG 0.608143 1.3:+28342916 None:intergenic
AGACACTTTGTAATGCATGT+GGG 0.608576 1.3:-28341859 MS.gene64293:CDS
CTTACAGAAAGTGAATTGAT+GGG 0.611737 1.3:+28342773 None:intergenic
GTGATTGTAGCCACTTAAGA+GGG 0.622729 1.3:+28342090 None:intergenic
ACATGCATTCTAATTCCCAC+AGG 0.630282 1.3:-28341769 MS.gene64293:CDS
GGGAGGAAATGTCATCATTG+TGG 0.639567 1.3:-28341926 MS.gene64293:CDS
AGGGCCAATGGATTGAGCGA+AGG 0.639769 1.3:+28342803 None:intergenic
AGAGGTCGTCCACAGAACCA+AGG 0.642044 1.3:+28342915 None:intergenic
CCTCAAACCTACAATTCCCG+TGG 0.649034 1.3:-28342003 MS.gene64293:CDS
GACGGTATTCAGGTACAAGT+CGG 0.649278 1.3:+28341819 None:intergenic
AAGTTGGGCTATTTGCAGGA+CGG 0.658089 1.3:+28341801 None:intergenic
AACAAACCCCAACTATTGGG+AGG 0.659781 1.3:-28341943 MS.gene64293:CDS
TTTCTCATCTGACATAGGTG+AGG 0.665571 1.3:-28342888 MS.gene64293:CDS
GTAGGTTTGAGGCATCAGCA+AGG 0.716777 1.3:+28342014 None:intergenic
TGTCAGATGAGAAATCCAAG+AGG 0.747403 1.3:+28342897 None:intergenic
GAGTTGATGATACTCCACAA+TGG 0.801331 1.3:-28341904 MS.gene64293:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTATTTTGAAAAGGTTAA+TGG + chr1.3:28341909-28341928 None:intergenic 20.0%
! AACTCATAAGTATGGAAAAA+AGG + chr1.3:28342321-28342340 None:intergenic 25.0%
! AAGGAAAACAAGTAAAAATC+TGG + chr1.3:28342074-28342093 None:intergenic 25.0%
!!! ATCAAGCAAGTATTTTGAAA+AGG + chr1.3:28341916-28341935 None:intergenic 25.0%
ACTTACAGAAAGTGAATTGA+TGG + chr1.3:28341878-28341897 None:intergenic 30.0%
ATTTGATGCTTCAAAAGATC+CGG + chr1.3:28342472-28342491 None:intergenic 30.0%
CACTAGCTAATATTCTACTT+TGG + chr1.3:28342048-28342067 None:intergenic 30.0%
CATGAAAACTTTGATGCAAA+CGG + chr1.3:28342165-28342184 None:intergenic 30.0%
CTTACAGAAAGTGAATTGAT+GGG + chr1.3:28341877-28341896 None:intergenic 30.0%
CTTCACATAACTCATAAGTA+TGG + chr1.3:28342329-28342348 None:intergenic 30.0%
TCCTTTAAGCATCAATGTAT+TGG - chr1.3:28342089-28342108 MS.gene64293:CDS 30.0%
TTCACTTTCTGTAAGTTTGA+CGG - chr1.3:28341882-28341901 MS.gene64293:CDS 30.0%
!!! TATCTAGTTTTGACTTGTTG+AGG - chr1.3:28341940-28341959 MS.gene64293:CDS 30.0%
AAGACACTTTGTAATGCATG+TGG - chr1.3:28342787-28342806 MS.gene64293:CDS 35.0%
AGACACTTTGTAATGCATGT+GGG - chr1.3:28342788-28342807 MS.gene64293:CDS 35.0%
GCCAATACATTGATGCTTAA+AGG + chr1.3:28342093-28342112 None:intergenic 35.0%
TCAACAAATGTTTCAACAGC+CGG + chr1.3:28342433-28342452 None:intergenic 35.0%
TCCTGGAACATGAAAATAAG+CGG + chr1.3:28342361-28342380 None:intergenic 35.0%
TGAAACAAACCCCAACTATT+GGG - chr1.3:28342701-28342720 MS.gene64293:intron 35.0%
TGAATTGTCGTGTATTCAAC+CGG - chr1.3:28342450-28342469 MS.gene64293:intron 35.0%
TTGGATTTCTCATCTGACAT+AGG - chr1.3:28341754-28341773 MS.gene64293:CDS 35.0%
! AGCATCAATGTATTGGCATT+TGG - chr1.3:28342096-28342115 MS.gene64293:CDS 35.0%
! CATGCATTACAAAGTGTCTT+TGG + chr1.3:28342787-28342806 None:intergenic 35.0%
! GGTTTGTTTCACTTTCTCTT+TGG + chr1.3:28342692-28342711 None:intergenic 35.0%
!! CACTTTCTCTTTGGAAGTTT+TGG + chr1.3:28342683-28342702 None:intergenic 35.0%
!! TCTTTGGAAGTTTTGGTACT+CGG + chr1.3:28342676-28342695 None:intergenic 35.0%
AACAGCATTACCCTCTTAAG+TGG - chr1.3:28342547-28342566 MS.gene64293:intron 40.0%
ACATGCATTCTAATTCCCAC+AGG - chr1.3:28342878-28342897 MS.gene64293:CDS 40.0%
ACATTTCCTCCCAATAGTTG+GGG + chr1.3:28342713-28342732 None:intergenic 40.0%
ACTTAAGAGGGTAATGCTGT+TGG + chr1.3:28342548-28342567 None:intergenic 40.0%
AGTGAAGGAAAGGCTTTCTT+AGG + chr1.3:28341802-28341821 None:intergenic 40.0%
CACTTGTGATCACTGTTTCA+TGG - chr1.3:28342185-28342204 MS.gene64293:CDS 40.0%
GACACTTTGTAATGCATGTG+GGG - chr1.3:28342789-28342808 MS.gene64293:CDS 40.0%
GACATTTCCTCCCAATAGTT+GGG + chr1.3:28342714-28342733 None:intergenic 40.0%
GTCCAACAAAGATGCATTTC+CGG - chr1.3:28342411-28342430 MS.gene64293:intron 40.0%
GTGAAACAAACCCCAACTAT+TGG - chr1.3:28342700-28342719 MS.gene64293:intron 40.0%
GTGATTGTAGCCACTTAAGA+GGG + chr1.3:28342560-28342579 None:intergenic 40.0%
TAATTCCCACAGGAAAGTAG+TGG - chr1.3:28342888-28342907 MS.gene64293:CDS 40.0%
TGAATTGATGGGATCATCCA+GGG + chr1.3:28341866-28341885 None:intergenic 40.0%
TGACATTTCCTCCCAATAGT+TGG + chr1.3:28342715-28342734 None:intergenic 40.0%
TGTCAGATGAGAAATCCAAG+AGG + chr1.3:28341753-28341772 None:intergenic 40.0%
TGTGATTGTAGCCACTTAAG+AGG + chr1.3:28342561-28342580 None:intergenic 40.0%
TTTCTCATCTGACATAGGTG+AGG - chr1.3:28341759-28341778 MS.gene64293:CDS 40.0%
TTTGTAATGCATGTGGGGTT+AGG - chr1.3:28342794-28342813 MS.gene64293:CDS 40.0%
! CAAAGTGTCTTTGGACCATT+TGG + chr1.3:28342778-28342797 None:intergenic 40.0%
! TATTTTCATGTTCCAGGAGG+AGG - chr1.3:28342363-28342382 MS.gene64293:intron 40.0%
!! GAGTTGATGATACTCCACAA+TGG - chr1.3:28342743-28342762 MS.gene64293:intron 40.0%
!! GCTTATTTTCATGTTCCAGG+AGG - chr1.3:28342360-28342379 MS.gene64293:intron 40.0%
!! TTCTGGTTTGAGTGAAGGAA+AGG + chr1.3:28341812-28341831 None:intergenic 40.0%
AACAAACCCCAACTATTGGG+AGG - chr1.3:28342704-28342723 MS.gene64293:intron 45.0%
AAGTTGGGCTATTTGCAGGA+CGG + chr1.3:28342849-28342868 None:intergenic 45.0%
ACCGCAGGCATTAACAATCT+CGG + chr1.3:28342126-28342145 None:intergenic 45.0%
AGCCGGAAATGCATCTTTGT+TGG + chr1.3:28342416-28342435 None:intergenic 45.0%
ATGAGGAAGCAGAAGGGAAT+GGG - chr1.3:28342913-28342932 MS.gene64293:CDS 45.0%
CATCTCCACTACTTTCCTGT+GGG + chr1.3:28342896-28342915 None:intergenic 45.0%
CGAAAAGTTGGGCTATTTGC+AGG + chr1.3:28342853-28342872 None:intergenic 45.0%
CTATTTGCAGGACGGTATTC+AGG + chr1.3:28342841-28342860 None:intergenic 45.0%
GACGGTATTCAGGTACAAGT+CGG + chr1.3:28342831-28342850 None:intergenic 45.0%
GCATGTCACTGCGAAAAGTT+GGG + chr1.3:28342864-28342883 None:intergenic 45.0%
GGAATTCCTCGAGTAAACTC+AGG + chr1.3:28342300-28342319 None:intergenic 45.0%
GGGAGGAAATGTCATCATTG+TGG - chr1.3:28342721-28342740 MS.gene64293:intron 45.0%
GTGAATTGATGGGATCATCC+AGG + chr1.3:28341867-28341886 None:intergenic 45.0%
GTTTCATGGTTTCCATGTCG+TGG - chr1.3:28342199-28342218 MS.gene64293:CDS 45.0%
TCATCTCCACTACTTTCCTG+TGG + chr1.3:28342897-28342916 None:intergenic 45.0%
TCCGAGATTGTTAATGCCTG+CGG - chr1.3:28342122-28342141 MS.gene64293:CDS 45.0%
TGAATGCCTGAGTTTACTCG+AGG - chr1.3:28342291-28342310 MS.gene64293:intron 45.0%
TGCATGTCACTGCGAAAAGT+TGG + chr1.3:28342865-28342884 None:intergenic 45.0%
TGTGGGGTTAGGTATAAGTC+TGG - chr1.3:28342805-28342824 MS.gene64293:CDS 45.0%
TTGCAGAAGAGGAGCTTGAA+TGG - chr1.3:28342386-28342405 MS.gene64293:intron 45.0%
! ACAGGAAAGTAGTGGAGATG+AGG - chr1.3:28342896-28342915 MS.gene64293:CDS 45.0%
! GTTGTTTCCACGGGAATTGT+AGG + chr1.3:28342654-28342673 None:intergenic 45.0%
! TTGGTACTCGGTTGTTTCCA+CGG + chr1.3:28342664-28342683 None:intergenic 45.0%
! TTGTGCTGTTCTCGAGCTTT+GGG + chr1.3:28342501-28342520 None:intergenic 45.0%
!! CTGCATTCTGGTTTGAGTGA+AGG + chr1.3:28341817-28341836 None:intergenic 45.0%
!! GCCGCTTATTTTCATGTTCC+AGG - chr1.3:28342357-28342376 MS.gene64293:intron 45.0%
AAGCAGAAGGGAATGGGAAC+GGG - chr1.3:28342919-28342938 MS.gene64293:CDS 50.0%
AGTGGAGATGAGGAAGCAGA+AGG - chr1.3:28342906-28342925 MS.gene64293:CDS 50.0%
CCACGGGAATTGTAGGTTTG+AGG + chr1.3:28342647-28342666 None:intergenic 50.0%
CCTCAAACCTACAATTCCCG+TGG - chr1.3:28342644-28342663 MS.gene64293:intron 50.0%
GAAGCAGAAGGGAATGGGAA+CGG - chr1.3:28342918-28342937 MS.gene64293:CDS 50.0%
GAAGGTGGATCACTGCATTC+TGG + chr1.3:28341829-28341848 None:intergenic 50.0%
GATGAGGAAGCAGAAGGGAA+TGG - chr1.3:28342912-28342931 MS.gene64293:CDS 50.0%
GTGGAGATGAGGAAGCAGAA+GGG - chr1.3:28342907-28342926 MS.gene64293:CDS 50.0%
TCCACCTTCGCTCAATCCAT+TGG - chr1.3:28341840-28341859 MS.gene64293:CDS 50.0%
! CTTGTGCTGTTCTCGAGCTT+TGG + chr1.3:28342502-28342521 None:intergenic 50.0%
! GTAGGTTTGAGGCATCAGCA+AGG + chr1.3:28342636-28342655 None:intergenic 50.0%
! TGGTACTCGGTTGTTTCCAC+GGG + chr1.3:28342663-28342682 None:intergenic 50.0%
! TGTGCTGTTCTCGAGCTTTG+GGG + chr1.3:28342500-28342519 None:intergenic 50.0%
AGAGATGCAGCTCCACGACA+TGG + chr1.3:28342214-28342233 None:intergenic 55.0%
AGAGGTCGTCCACAGAACCA+AGG + chr1.3:28341735-28341754 None:intergenic 55.0%
ATGGGATCATCCAGGGCCAA+TGG + chr1.3:28341859-28341878 None:intergenic 55.0%
CAATGGCGTGCAGGTCCAAA+TGG - chr1.3:28342760-28342779 MS.gene64293:intron 55.0%
GAGGTCGTCCACAGAACCAA+GGG + chr1.3:28341734-28341753 None:intergenic 55.0%
GATACTCCACAATGGCGTGC+AGG - chr1.3:28342751-28342770 MS.gene64293:intron 55.0%
TGAAGTTCCCTGTCCGTGCA+CGG - chr1.3:28342581-28342600 MS.gene64293:intron 55.0%
TGTCGTGGAGCTGCATCTCT+CGG - chr1.3:28342214-28342233 MS.gene64293:CDS 55.0%
TTCGCTCAATCCATTGGCCC+TGG - chr1.3:28341846-28341865 MS.gene64293:CDS 55.0%
TTTGGACCTGCACGCCATTG+TGG + chr1.3:28342760-28342779 None:intergenic 55.0%
! GAATCTGTCGTTTGCACCGC+AGG + chr1.3:28342141-28342160 None:intergenic 55.0%
! TACGAGACTTGCTCCGTGCA+CGG + chr1.3:28342597-28342616 None:intergenic 55.0%
! TGGTTCTGTGGACGACCTCT+TGG - chr1.3:28341735-28341754 MS.gene64293:CDS 55.0%
! TTGAGGCATCAGCAAGGCCA+AGG + chr1.3:28342630-28342649 None:intergenic 55.0%
!! AGGGCCAATGGATTGAGCGA+AGG + chr1.3:28341847-28341866 None:intergenic 55.0%
!! GCCAATGGATTGAGCGAAGG+TGG + chr1.3:28341844-28341863 None:intergenic 55.0%
ACTTGCTCCGTGCACGGACA+GGG + chr1.3:28342591-28342610 None:intergenic 60.0%
CCAGGAGGAGGTTGCAGAAG+AGG - chr1.3:28342375-28342394 MS.gene64293:intron 60.0%
CCTCTTCTGCAACCTCCTCC+TGG + chr1.3:28342378-28342397 None:intergenic 60.0%
TCTCGTAGCAAGCCTCGCCT+TGG - chr1.3:28342610-28342629 MS.gene64293:intron 60.0%
GCATCAGCAAGGCCAAGGCG+AGG + chr1.3:28342625-28342644 None:intergenic 65.0%
! GACTTGCTCCGTGCACGGAC+AGG + chr1.3:28342592-28342611 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 28341724 28342945 28341724 ID=MS.gene64293
chr1.3 mRNA 28341724 28342945 28341724 ID=MS.gene64293.t1;Parent=MS.gene64293
chr1.3 exon 28342778 28342945 28342778 ID=MS.gene64293.t1.exon1;Parent=MS.gene64293.t1
chr1.3 CDS 28342778 28342945 28342778 ID=cds.MS.gene64293.t1;Parent=MS.gene64293.t1
chr1.3 exon 28341724 28342290 28341724 ID=MS.gene64293.t1.exon2;Parent=MS.gene64293.t1
chr1.3 CDS 28341724 28342290 28341724 ID=cds.MS.gene64293.t1;Parent=MS.gene64293.t1
Gene Sequence

>MS.gene64293

ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGACAAACCTAAGAAAGCCTTTCCTTCACTCAAACCAGAATGCAGTGATCCACCTTCGCTCAATCCATTGGCCCTGGATGATCCCATCAATTCACTTTCTGTAAGTTTGACGGTCCATTAACCTTTTCAAAATACTTGCTTGATTTTTTATCTAGTTTTGACTTGTTGAGGTGTGATCATGAAAGCGAAAGCATGTGTGAATTATGATTTGTTTTGAATCAATTAGAATTTTGATATATTATATTGTTCTTGTCCAAAGTAGAATATTAGCTAGTGTTTCCAGATTTTTACTTGTTTTCCTTTAAGCATCAATGTATTGGCATTTGGAATTCCGAGATTGTTAATGCCTGCGGTGCAAACGACAGATTCTCCGTTTGCATCAAAGTTTTCATGCACTTGTGATCACTGTTTCATGGTTTCCATGTCGTGGAGCTGCATCTCTCGGCGTGAATACTAATTTCTTGATCGAATTGTTGTGTCGTTGACTTGTTGCATCAGTTGAATGCCTGAGTTTACTCGAGGAATTCCTTTTTTCCATACTTATGAGTTATGTGAAGTTTAATGTGCCGCTTATTTTCATGTTCCAGGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGAATTGTCGTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAAAGCTCGAGAACAGCACAAGCAGCAGCAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTACAATTCCCGTGGAAACAACCGAGTACCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACTATTGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACATGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAACGGGTTGA
Protein sequence

>MS.gene64293.t1

MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLKPECSDPPSLNPLALDDPINSLSEEVAEEELEWLSNKDAFPAVETFVELSCIQPDLLKHQMTSPKLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSTKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDMHSNSHRKVVEMRKQKGMGTG