AlfalfaGEDB | MS.gene64298

M. sativa cultivar XinJiangDaYe / MS.gene64298

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64298.t1	RHN78770.1	87	316	41	0	1	316	1	316	9.70E-155	556.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64298.t1	Q9SSW1	31.7	101	61	1	43	143	99	191	3.4e-07	57.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64298.t1	A0A396JKH3	87.0	316	41	0	1	316	1	316	7.0e-155	556.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene64298.t1	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64298.t1	MTR_1g046810	86.032	315	44	0	1	315	1	315	0.0	527
MS.gene64298.t1	MTR_1g052185	37.082	329	119	12	5	310	12	275	5.15e-39	139
MS.gene64298.t1	MTR_1g053530	37.168	226	95	7	63	281	39	224	4.00e-28	109
MS.gene64298.t1	MTR_1g085590	35.926	270	85	10	71	315	16	222	6.44e-27	107
MS.gene64298.t1	MTR_1g063150	35.945	217	57	7	94	310	36	170	2.24e-25	100
MS.gene64298.t1	MTR_1g063140	40.361	166	45	8	147	311	1	113	1.67e-17	79.3
MS.gene64298.t1	MTR_5g098470	30.144	209	84	9	14	210	46	204	7.55e-12	65.1

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 58 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGTGTGCTGCTAACA+AGG	0.519240	1.3:+28397388	MS.gene64298:CDS
AACAGAAAAGAAACACTAAC+TGG	0.431171	1.3:-28397625	None:intergenic
AACTGTAGATTCTTGAACCT+GGG	0.459451	1.3:-28396786	None:intergenic
AAGATGGGGCAGTCGGTGAG+TGG	0.586640	1.3:-28397128	None:intergenic
AATGAGAAGATGAAGGAACA+AGG	0.607433	1.3:+28397372	MS.gene64298:CDS
AATTAGGGCCAAGAGTTGTC+AGG	0.505315	1.3:+28397556	MS.gene64298:CDS
ACAAGCATAATCATGATGAT+GGG	0.583581	1.3:+28396992	MS.gene64298:CDS
ACATTGTTATATATGTCTTA+TGG	0.192869	1.3:+28397294	MS.gene64298:CDS
ACCACCAAGTGATTTACCAG+AGG	0.717389	1.3:-28396833	None:intergenic
ACCGACTGCCCCATCTTCCT+TGG	0.446430	1.3:+28397134	MS.gene64298:CDS

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGCATAATCATGATGAT+GGG	+	chr1.3:28396992-28397011	MS.gene64298:CDS	30.0%
CTTTGAATGGACATATTAGA+TGG	+	chr1.3:28397070-28397089	MS.gene64298:CDS	30.0%
AACTGTAGATTCTTGAACCT+GGG	-	chr1.3:28396789-28396808	None:intergenic	35.0%
AATGAGAAGATGAAGGAACA+AGG	+	chr1.3:28397372-28397391	MS.gene64298:CDS	35.0%
AGCGAAGATGAAACTGAATT+AGG	+	chr1.3:28397540-28397559	MS.gene64298:CDS	35.0%
ATTAGATGGCATGCTCAAAA+GGG	+	chr1.3:28397084-28397103	MS.gene64298:CDS	35.0%
CACAAGCATAATCATGATGA+TGG	+	chr1.3:28396991-28397010	MS.gene64298:CDS	35.0%
CACATGTGATGTTTGTAACA+AGG	+	chr1.3:28397029-28397048	MS.gene64298:CDS	35.0%
CATGATCATGCTGTGAATAA+TGG	+	chr1.3:28396916-28396935	MS.gene64298:CDS	35.0%
CATTATTCACAGCATGATCA+TGG	-	chr1.3:28396918-28396937	None:intergenic	35.0%

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	28396682	28397632	28396682	ID=MS.gene64298
chr1.3	mRNA	28396682	28397632	28396682	ID=MS.gene64298.t1;Parent=MS.gene64298
chr1.3	exon	28396682	28397632	28396682	ID=MS.gene64298.t1.exon1;Parent=MS.gene64298.t1
chr1.3	CDS	28396682	28397632	28396682	ID=cds.MS.gene64298.t1;Parent=MS.gene64298.t1

Gene Sequence

>MS.gene64298

ATGAACAAACACTATTCTTCACCTTCTTCTCACCATTCGTTTGATAAACCCAAAAACAGCCATGATCATTATCACCAACAGACTCTTGAAGATGATAAGAAAAACCCAGGTTCAAGAATCTACAGTTGTGAGTTCTGTCACAAAACATTTACCTCTGGTAAATCACTTGGTGGTCACAAAACTATTCACCGCTCCTCTAACACTCTTCTTCAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAATGGCGGCACCTTGAAGAAGACTACAAAAATTACTTGGGTTTTTTCTTCTTCTCTTCACAAGCATAATCATGATGATGGGAAACTGAAGAACCGCACATGTGATGTTTGTAACAAGGTTTTTTCATCCAACAATGCTTTGAATGGACATATTAGATGGCATGCTCAAAAGGGTTCGAAGAAGGGTGTTATTATCCACTCACCGACTGCCCCATCTTCCTTGGAACAAAGTCAACTTGAGTTTCTACCATCTACTGACTTGTCAAAGTACTTGCCGCCAATATCATATAAGACCAAAAAACGGAGTCCCAGGAGAAGGCGTATTGCTGATAATGATGAGGAAATTACTATTGCTGCAAAAACATTGTTATATATGTCTTATGGGGGTTATGAGGGATCAACTAAAAGGCAGAAGATTTCCAGCAATACGGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCACAACGAAAAAAACTTGGTGCTGAGGTTGAAGATTCCTAAAGACAAGATTTTTCAAACATCGCAAGATTGCAAGGAACCTGCAGGATCTAGCTGTGATATTGAAGGCAAGAAGAATATTAGCGAAGATGAAACTGAATTAGGGCCAAGAGTTGTCAGGAATTTTGATTTGAATGAGCTTCCAAGTGATGATTTCGAAGATGAAACCAGTTAG

Protein sequence

>MS.gene64298.t1

MNKHYSSPSSHHSFDKPKNSHDHYHQQTLEDDKKNPGSRIYSCEFCHKTFTSGKSLGGHKTIHRSSNTLLQPKTNKQIHDHAVNNGGTLKKTTKITWVFSSSLHKHNHDDGKLKNRTCDVCNKVFSSNNALNGHIRWHAQKGSKKGVIIHSPTAPSSLEQSQLEFLPSTDLSKYLPPISYKTKKRSPRRRRIADNDEEITIAAKTLLYMSYGGYEGSTKRQKISSNTVDDNEKMKEQGVLLTRCVCHNEKNLVLRLKIPKDKIFQTSQDCKEPAGSSCDIEGKKNISEDETELGPRVVRNFDLNELPSDDFEDETS