AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64421

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64421.t1 MTR_2g041430 94.536 366 10 4 1 365 1 357 0.0 698
MS.gene64421.t1 MTR_2g041430 94.490 363 10 4 1 362 1 354 0.0 692
MS.gene64421.t1 MTR_2g041430 94.490 363 10 4 1 362 1 354 0.0 692
MS.gene64421.t1 MTR_4g125490 64.042 381 93 14 3 360 5 364 6.13e-144 415
MS.gene64421.t1 MTR_8g020560 45.559 349 155 13 3 333 7 338 2.84e-69 221
MS.gene64421.t1 MTR_0001s0490 39.714 350 148 13 7 347 25 320 2.12e-58 193
MS.gene64421.t1 MTR_1g017490 57.983 119 42 2 5 119 9 123 1.12e-40 150
MS.gene64421.t1 MTR_1g017490 57.983 119 42 2 5 119 142 256 1.89e-40 151
MS.gene64421.t1 MTR_5g027030 60.177 113 29 2 7 119 16 112 3.76e-40 145
MS.gene64421.t1 MTR_7g104050 54.198 131 45 4 4 125 68 192 5.48e-35 132
MS.gene64421.t1 MTR_7g104050 54.198 131 45 4 4 125 68 192 6.47e-35 132
MS.gene64421.t1 MTR_3g092330 48.246 114 37 3 7 120 113 204 3.43e-27 113
MS.gene64421.t1 MTR_8g035910 43.697 119 45 3 3 119 45 143 6.08e-22 97.1
MS.gene64421.t1 MTR_8g035910 46.377 69 37 0 75 143 297 365 3.14e-13 70.9
MS.gene64421.t1 MTR_8g035640 64.103 39 14 0 75 113 51 89 1.67e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64421.t1 AT3G13960 71.681 113 28 2 7 119 16 124 3.62e-55 186
MS.gene64421.t1 AT2G06200 64.167 120 36 2 5 117 4 123 4.71e-47 160
MS.gene64421.t1 AT2G06200 64.167 120 36 2 5 117 43 162 5.60e-47 162
MS.gene64421.t1 AT4G37740 58.120 117 41 4 5 120 162 271 1.15e-38 145
MS.gene64421.t1 AT2G36400 56.198 121 50 2 8 127 77 195 1.10e-36 137
MS.gene64421.t1 AT2G22840 56.897 116 42 4 5 119 131 239 7.24e-34 132
MS.gene64421.t1 AT3G52910 55.172 116 44 4 8 119 83 194 5.38e-33 127
MS.gene64421.t1 AT2G06200 92.157 51 2 1 69 117 1 51 3.26e-26 103
MS.gene64421.t1 AT5G53660 48.246 114 38 2 6 119 58 150 1.62e-25 106
MS.gene64421.t1 AT4G24150 44.444 117 55 2 8 119 112 223 1.17e-23 102
MS.gene64421.t1 AT4G24150 44.444 117 55 2 8 119 150 261 1.58e-23 102
MS.gene64421.t1 AT4G24150 40.288 139 54 3 8 119 150 286 5.51e-23 100
MS.gene64421.t1 AT2G45480 40.496 121 55 3 3 116 19 129 1.11e-18 86.3
MS.gene64421.t1 AT2G45480 40.496 121 55 3 3 116 19 129 5.62e-18 85.5
MS.gene64421.t1 AT2G45480 46.667 90 33 4 55 144 289 363 6.42e-13 70.1
MS.gene64421.t1 AT2G45480 40.496 121 55 3 3 116 17 127 5.83e-18 85.5
MS.gene64421.t1 AT2G45480 46.667 90 33 4 55 144 287 361 6.68e-13 70.1

Find 55 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAAGGATTGTTGCAAAT+TGG 0.210488 2.4:-48677473 None:intergenic
TGCCATTGTGATGGAGTAAA+AGG 0.243712 2.4:-48676324 None:intergenic
CTTTCACAATATTTAGAATC+TGG 0.287060 2.4:-48677238 None:intergenic
CAGTGTTGGTGTTGTTGATT+AGG 0.322488 2.4:-48676468 None:intergenic
ATTTACAAGTACATGGCTTC+TGG 0.322552 2.4:+48676369 MS.gene64421:CDS
GAGAGATCAATGGCTTGATT+TGG 0.343166 2.4:+48678580 MS.gene64421:CDS
TTTGATGAATGGCCACATAA+AGG 0.368324 2.4:+48678557 MS.gene64421:CDS
AACTATCTGCAAATGGGTTT+AGG 0.375973 2.4:+48677139 MS.gene64421:CDS
GCATTCTTCAAAGAACCTTC+TGG 0.390445 2.4:+48678314 MS.gene64421:CDS
ATTAATAATGCTTCATCACT+TGG 0.397780 2.4:+48677340 MS.gene64421:CDS
TCAACTTTGTCATCTGGTAT+TGG 0.398620 2.4:+48677517 MS.gene64421:CDS
GAAGAACAGATGGAAAGAAA+TGG 0.403362 2.4:+48677194 MS.gene64421:CDS
CTCAGAATAACACTGATTAC+AGG 0.412282 2.4:+48677593 MS.gene64421:CDS
TTGATGAATGGCCACATAAA+GGG 0.413091 2.4:+48678558 MS.gene64421:CDS
GAAGAATTAGTTAATGATGC+AGG 0.421290 2.4:-48677388 None:intergenic
TTCATCGCTTCTTTGATGAA+TGG 0.422547 2.4:+48678546 MS.gene64421:CDS
TCAAGGTCAACTTTGTCATC+TGG 0.430096 2.4:+48677511 MS.gene64421:CDS
TGTATCCTCATACAACTTCA+AGG 0.438634 2.4:+48677494 MS.gene64421:CDS
AAGCTTCTCTGCTTCATCAA+TGG 0.443492 2.4:+48678352 MS.gene64421:CDS
CTTCTACATCTACCTGGCTC+TGG 0.445022 2.4:-48677175 None:intergenic
TGGATGGAACTATCTGCAAA+TGG 0.447963 2.4:+48677132 MS.gene64421:CDS
TCGATTTCGATTCCATCCTC+TGG 0.461357 2.4:+48678629 MS.gene64421:CDS
CTTCCACAGGCTTTCTTGAA+CGG 0.472599 2.4:-48677282 None:intergenic
TATCCTCAAAATTCTTGCTA+TGG 0.474491 2.4:+48677448 MS.gene64421:CDS
CTGATGGTGAAAAGAAGATC+AGG 0.476075 2.4:-48676405 None:intergenic
CATTGATCTCTCCCTTTATG+TGG 0.488068 2.4:-48678569 None:intergenic
GTTGACCTTGAAGTTGTATG+AGG 0.489086 2.4:-48677499 None:intergenic
AAAAGGAACAGGTATGTGTA+TGG 0.489899 2.4:+48678266 MS.gene64421:intron
AGTTGTATGAGGATACATAA+AGG 0.504350 2.4:-48677488 None:intergenic
GTATTTCTAGAAGTGAAAGT+TGG 0.508645 2.4:-48678662 None:intergenic
AGAAAGATAGATCCAGAGCC+AGG 0.511253 2.4:+48677163 MS.gene64421:CDS
GGATGGAACTATCTGCAAAT+GGG 0.512539 2.4:+48677133 MS.gene64421:CDS
CATCAATGGAACATGATCCT+TGG 0.521187 2.4:+48678366 MS.gene64421:CDS
AGCTCTTATTTACAAGTACA+TGG 0.521532 2.4:+48676362 MS.gene64421:CDS
CAAAGAAGTAGAAGATGATG+AGG 0.529690 2.4:-48678417 None:intergenic
CACATAAAGGGAGAGATCAA+TGG 0.535742 2.4:+48678570 MS.gene64421:CDS
GTAAGTGGTGTTAGTTGCCA+AGG 0.556427 2.4:-48678383 None:intergenic
GGTAGATGTAGAAGAACAGA+TGG 0.565829 2.4:+48677184 MS.gene64421:CDS
TCAAGTTCTTGCCATTGTGA+TGG 0.567945 2.4:-48676333 None:intergenic
AAGAATTAGTTAATGATGCA+GGG 0.570085 2.4:-48677387 None:intergenic
GAGGAAGAACTCATAGTAAG+TGG 0.573735 2.4:-48678398 None:intergenic
TCTGTTCTTCTACATCTACC+TGG 0.588963 2.4:-48677181 None:intergenic
GCTGCTTTGAGTGTTCACTA+AGG 0.590411 2.4:-48678496 None:intergenic
TGTGAAAGACACATGCATAG+AGG 0.590712 2.4:+48677253 MS.gene64421:CDS
GGAAAATCATGACCAGAGGA+TGG 0.595251 2.4:-48678641 None:intergenic
TTCATAGTACTGCTACCAGA+AGG 0.597595 2.4:-48678329 None:intergenic
TTCACTTCTAGAAATACCCA+TGG 0.600872 2.4:+48678668 MS.gene64421:CDS
AGAATTGCTATCAAGAAACA+AGG 0.601977 2.4:-48677566 None:intergenic
ATGGTGAAAAGAAGATCAGG+TGG 0.629455 2.4:-48676402 None:intergenic
AATCGAAATCGATAATTGAG+TGG 0.635985 2.4:-48678618 None:intergenic
TTACATCGTGAATTCGAACA+TGG 0.636750 2.4:+48678799 MS.gene64421:CDS
AGAGAAAGGACTTACAGTGT+TGG 0.638023 2.4:-48676482 None:intergenic
AAACCGTTCAAGAAAGCCTG+TGG 0.641388 2.4:+48677279 MS.gene64421:CDS
AGTTGGAAAATCATGACCAG+AGG 0.663324 2.4:-48678645 None:intergenic
GAATTGCTATCAAGAAACAA+GGG 0.694882 2.4:-48677565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAGATCAAAA+TGG + chr2.4:48678149-48678168 MS.gene64421:intron 15.0%
!! TATAGAGATAATTTAGTTAA+AGG + chr2.4:48677038-48677057 MS.gene64421:intron 15.0%
!!! TAGTTTTTTTTAGACAAATT+TGG + chr2.4:48676691-48676710 MS.gene64421:intron 15.0%
!!! TTATTTTGATTTTTTTCAGT+TGG + chr2.4:48677112-48677131 MS.gene64421:intron 15.0%
!! AAAAAATCAAAATAACCCTT+TGG - chr2.4:48677107-48677126 None:intergenic 20.0%
!! GAAATTACAAAAAGAATCAA+CGG - chr2.4:48678068-48678087 None:intergenic 20.0%
!! GATACATTCAAAGAATATAA+TGG + chr2.4:48678088-48678107 MS.gene64421:intron 20.0%
!! TAAACATATGAATATAGAGA+GGG - chr2.4:48676508-48676527 None:intergenic 20.0%
!! TTAGCAAAAAAGATAGTATT+TGG - chr2.4:48676936-48676955 None:intergenic 20.0%
!! TTTGATATAGTATACATCTT+CGG + chr2.4:48676829-48676848 MS.gene64421:intron 20.0%
!!! CTATACATTCATAATCTTTT+AGG - chr2.4:48677023-48677042 None:intergenic 20.0%
!!! TTTTGATAAATAGTCGTTTT+TGG + chr2.4:48677655-48677674 MS.gene64421:intron 20.0%
!!! TTTTTTGTTAGTTAGTTTGT+TGG + chr2.4:48677771-48677790 MS.gene64421:intron 20.0%
! AAGAATTAGTTAATGATGCA+GGG - chr2.4:48677390-48677409 None:intergenic 25.0%
! ATTAATAATGCTTCATCACT+TGG + chr2.4:48677340-48677359 MS.gene64421:CDS 25.0%
! GAAGATGTATACTATATCAA+AGG - chr2.4:48676830-48676849 None:intergenic 25.0%
! GTAAACATATGAATATAGAG+AGG - chr2.4:48676509-48676528 None:intergenic 25.0%
! TATGAAAGTTCAATTACCAT+GGG - chr2.4:48678687-48678706 None:intergenic 25.0%
! TTTGAATTACTAACAAAGAC+AGG + chr2.4:48677802-48677821 MS.gene64421:intron 25.0%
!! ATAGTGTTTGAACTTTGTTT+CGG + chr2.4:48677630-48677649 MS.gene64421:intron 25.0%
!! CTTCAAGTAAATAGTCATTT+TGG + chr2.4:48677945-48677964 MS.gene64421:intron 25.0%
!! CTTTCACAATATTTAGAATC+TGG - chr2.4:48677241-48677260 None:intergenic 25.0%
!! GTTTTCTTCCTTTGTAAAAA+AGG + chr2.4:48678249-48678268 MS.gene64421:intron 25.0%
!!! AAGAATTTTGAGGATAGTTT+TGG - chr2.4:48677444-48677463 None:intergenic 25.0%
!!! TACTATCTTTTTTGCTAACA+TGG + chr2.4:48676938-48676957 MS.gene64421:intron 25.0%
!!! TATACTATATCAAAGGTGTT+AGG - chr2.4:48676823-48676842 None:intergenic 25.0%
!!! TTTGATTTTTTTCAGTTGGA+TGG + chr2.4:48677116-48677135 MS.gene64421:intron 25.0%
!!! TTTGGAGTAAATAGTCATTT+TGG + chr2.4:48677673-48677692 MS.gene64421:intron 25.0%
AATCGAAATCGATAATTGAG+TGG - chr2.4:48678621-48678640 None:intergenic 30.0%
AGAATTGCTATCAAGAAACA+AGG - chr2.4:48677569-48677588 None:intergenic 30.0%
AGTTGTATGAGGATACATAA+AGG - chr2.4:48677491-48677510 None:intergenic 30.0%
CACACATTAAGAGATCAAAA+TGG + chr2.4:48678116-48678135 MS.gene64421:intron 30.0%
CATAAAGGATTGTTGCAAAT+TGG - chr2.4:48677476-48677495 None:intergenic 30.0%
CATAGAGATTCATATCCATT+CGG + chr2.4:48678703-48678722 MS.gene64421:intron 30.0%
CTATGAAAGTTCAATTACCA+TGG - chr2.4:48678688-48678707 None:intergenic 30.0%
GAAACAAAGTTCAAACACTA+TGG - chr2.4:48677631-48677650 None:intergenic 30.0%
GAAGAATTAGTTAATGATGC+AGG - chr2.4:48677391-48677410 None:intergenic 30.0%
GAATTGCTATCAAGAAACAA+GGG - chr2.4:48677568-48677587 None:intergenic 30.0%
TATCCTCAAAATTCTTGCTA+TGG + chr2.4:48677448-48677467 MS.gene64421:CDS 30.0%
TGACATTGTCTTACACATTT+CGG + chr2.4:48677868-48677887 MS.gene64421:intron 30.0%
TTCCTTTGTAAAAAAGGAAC+AGG + chr2.4:48678255-48678274 MS.gene64421:intron 30.0%
! AGCTCTTATTTACAAGTACA+TGG + chr2.4:48676362-48676381 MS.gene64421:CDS 30.0%
! GAATTGTGATTGATTCTCTT+TGG + chr2.4:48678221-48678240 MS.gene64421:intron 30.0%
! TTCTTTGATAGTACTGTTCT+AGG + chr2.4:48678732-48678751 MS.gene64421:intron 30.0%
! TTTTGATCTCTTAATGTGTG+AGG - chr2.4:48678116-48678135 None:intergenic 30.0%
!! GTATTTCTAGAAGTGAAAGT+TGG - chr2.4:48678665-48678684 None:intergenic 30.0%
!!! TACCTGTTCCTTTTTTACAA+AGG - chr2.4:48678260-48678279 None:intergenic 30.0%
AAAAGGAACAGGTATGTGTA+TGG + chr2.4:48678266-48678285 MS.gene64421:intron 35.0%
AAATGAGTCTCTTTGACCAA+AGG + chr2.4:48677088-48677107 MS.gene64421:intron 35.0%
AATGAGTCTCTTTGACCAAA+GGG + chr2.4:48677089-48677108 MS.gene64421:intron 35.0%
ATCAAAGAAATTGAGCCGAA+TGG - chr2.4:48678721-48678740 None:intergenic 35.0%
ATTTACAAGTACATGGCTTC+TGG + chr2.4:48676369-48676388 MS.gene64421:CDS 35.0%
CAAAGAAGTAGAAGATGATG+AGG - chr2.4:48678420-48678439 None:intergenic 35.0%
CACCATCAGAAAAAGCTATT+TGG + chr2.4:48676419-48676438 MS.gene64421:CDS 35.0%
GAAGAACAGATGGAAAGAAA+TGG + chr2.4:48677194-48677213 MS.gene64421:CDS 35.0%
GGAAAAAGTCTTGAAGAAAG+AGG - chr2.4:48676450-48676469 None:intergenic 35.0%
TATACATCTTCGGATGTGTT+TGG + chr2.4:48676839-48676858 MS.gene64421:intron 35.0%
TCAACTTTGTCATCTGGTAT+TGG + chr2.4:48677517-48677536 MS.gene64421:CDS 35.0%
TGTATCCTCATACAACTTCA+AGG + chr2.4:48677494-48677513 MS.gene64421:CDS 35.0%
TGTGTATGGACAAAAAGAAG+AGG + chr2.4:48678280-48678299 MS.gene64421:CDS 35.0%
TTACATCGTGAATTCGAACA+TGG + chr2.4:48678799-48678818 MS.gene64421:CDS 35.0%
TTCATCGCTTCTTTGATGAA+TGG + chr2.4:48678546-48678565 MS.gene64421:CDS 35.0%
TTGATGAATGGCCACATAAA+GGG + chr2.4:48678558-48678577 MS.gene64421:CDS 35.0%
TTTGATGAATGGCCACATAA+AGG + chr2.4:48678557-48678576 MS.gene64421:CDS 35.0%
! AACTATCTGCAAATGGGTTT+AGG + chr2.4:48677139-48677158 MS.gene64421:CDS 35.0%
! CTCAGAATAACACTGATTAC+AGG + chr2.4:48677593-48677612 MS.gene64421:CDS 35.0%
! GAACCATAGCAAGAATTTTG+AGG - chr2.4:48677454-48677473 None:intergenic 35.0%
! TCGGAAGTTAGTTTGGTAAT+CGG + chr2.4:48677984-48678003 MS.gene64421:intron 35.0%
! TGGTTTGTAGATGTGTAACT+CGG + chr2.4:48677965-48677984 MS.gene64421:intron 35.0%
! TTCACTTCTAGAAATACCCA+TGG + chr2.4:48678668-48678687 MS.gene64421:CDS 35.0%
! TTCCTTTTACTCCATCACAA+TGG + chr2.4:48676322-48676341 MS.gene64421:CDS 35.0%
! TTTGGAGCTTCTGAAAATCA+CGG - chr2.4:48676918-48676937 None:intergenic 35.0%
!! GTCCAAATAGCTTTTTCTGA+TGG - chr2.4:48676424-48676443 None:intergenic 35.0%
!! TAATGATGCAGGGCTATTTT+TGG - chr2.4:48677380-48677399 None:intergenic 35.0%
!!! GTTGTTTTTACAACTTCCAC+AGG - chr2.4:48677298-48677317 None:intergenic 35.0%
AAGCTTCTCTGCTTCATCAA+TGG + chr2.4:48678352-48678371 MS.gene64421:CDS 40.0%
ACGGTGTTTGATGGAAATCA+CGG - chr2.4:48676971-48676990 None:intergenic 40.0%
AGAGAAAGGACTTACAGTGT+TGG - chr2.4:48676485-48676504 None:intergenic 40.0%
AGTATCTCAAACTCGTACCA+CGG + chr2.4:48676796-48676815 MS.gene64421:intron 40.0%
AGTTGGAAAATCATGACCAG+AGG - chr2.4:48678648-48678667 None:intergenic 40.0%
ATGGTGAAAAGAAGATCAGG+TGG - chr2.4:48676405-48676424 None:intergenic 40.0%
CACATAAAGGGAGAGATCAA+TGG + chr2.4:48678570-48678589 MS.gene64421:CDS 40.0%
CATCAATGGAACATGATCCT+TGG + chr2.4:48678366-48678385 MS.gene64421:CDS 40.0%
CATTGATCTCTCCCTTTATG+TGG - chr2.4:48678572-48678591 None:intergenic 40.0%
GAATATAGAGAGGGAGAGAA+AGG - chr2.4:48676499-48676518 None:intergenic 40.0%
GAGAGATCAATGGCTTGATT+TGG + chr2.4:48678580-48678599 MS.gene64421:CDS 40.0%
GAGGAAGAACTCATAGTAAG+TGG - chr2.4:48678401-48678420 None:intergenic 40.0%
GCATTCTTCAAAGAACCTTC+TGG + chr2.4:48678314-48678333 MS.gene64421:CDS 40.0%
GCTTCACTGCAAAAATGACA+TGG - chr2.4:48677721-48677740 None:intergenic 40.0%
GGATGGAACTATCTGCAAAT+GGG + chr2.4:48677133-48677152 MS.gene64421:CDS 40.0%
GGTAGATGTAGAAGAACAGA+TGG + chr2.4:48677184-48677203 MS.gene64421:CDS 40.0%
GTATGGACAAAAAGAAGAGG+TGG + chr2.4:48678283-48678302 MS.gene64421:CDS 40.0%
GTGTAACTCGGAAGTTAGTT+TGG + chr2.4:48677977-48677996 MS.gene64421:intron 40.0%
GTTGACCTTGAAGTTGTATG+AGG - chr2.4:48677502-48677521 None:intergenic 40.0%
GTTTGCAAAACGGTGTTTGA+TGG - chr2.4:48676980-48676999 None:intergenic 40.0%
TCAAGGTCAACTTTGTCATC+TGG + chr2.4:48677511-48677530 MS.gene64421:CDS 40.0%
TCAAGTTCTTGCCATTGTGA+TGG - chr2.4:48676336-48676355 None:intergenic 40.0%
TCTGTTCTTCTACATCTACC+TGG - chr2.4:48677184-48677203 None:intergenic 40.0%
TGGATGGAACTATCTGCAAA+TGG + chr2.4:48677132-48677151 MS.gene64421:CDS 40.0%
TGTGAAAGACACATGCATAG+AGG + chr2.4:48677253-48677272 MS.gene64421:CDS 40.0%
TTCATAGTACTGCTACCAGA+AGG - chr2.4:48678332-48678351 None:intergenic 40.0%
TTCGTACAGCGTTTGCAAAA+CGG - chr2.4:48676990-48677009 None:intergenic 40.0%
! AAGCGATGAACAGTTTTCTG+AGG - chr2.4:48678536-48678555 None:intergenic 40.0%
! CTGATGGTGAAAAGAAGATC+AGG - chr2.4:48676408-48676427 None:intergenic 40.0%
! GTGCTTTTGTGTGTTGCAAA+CGG - chr2.4:48676869-48676888 None:intergenic 40.0%
! TGCCATTGTGATGGAGTAAA+AGG - chr2.4:48676327-48676346 None:intergenic 40.0%
!! CAGTGTTGGTGTTGTTGATT+AGG - chr2.4:48676471-48676490 None:intergenic 40.0%
AAACCGTTCAAGAAAGCCTG+TGG + chr2.4:48677279-48677298 MS.gene64421:CDS 45.0%
AGAAAGATAGATCCAGAGCC+AGG + chr2.4:48677163-48677182 MS.gene64421:CDS 45.0%
CTTCCACAGGCTTTCTTGAA+CGG - chr2.4:48677285-48677304 None:intergenic 45.0%
GGAAAATCATGACCAGAGGA+TGG - chr2.4:48678644-48678663 None:intergenic 45.0%
TCGATTTCGATTCCATCCTC+TGG + chr2.4:48678629-48678648 MS.gene64421:CDS 45.0%
! GCTGCTTTGAGTGTTCACTA+AGG - chr2.4:48678499-48678518 None:intergenic 45.0%
! GTAAGTGGTGTTAGTTGCCA+AGG - chr2.4:48678386-48678405 None:intergenic 45.0%
!! TATCAAAGGTGTTAGGTCCG+TGG - chr2.4:48676816-48676835 None:intergenic 45.0%
!!! TTTTTAAAAAAAAATTAAGA+AGG - chr2.4:48676586-48676605 None:intergenic 5.0%
CTTCTACATCTACCTGGCTC+TGG - chr2.4:48677178-48677197 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 48676306 48678825 48676306 ID=MS.gene64421
chr2.4 mRNA 48676306 48678825 48676306 ID=MS.gene64421.t1;Parent=MS.gene64421
chr2.4 exon 48676306 48676489 48676306 ID=MS.gene64421.t1.exon1;Parent=MS.gene64421.t1
chr2.4 CDS 48676306 48676489 48676306 ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1
chr2.4 exon 48677131 48677614 48677131 ID=MS.gene64421.t1.exon2;Parent=MS.gene64421.t1
chr2.4 CDS 48677131 48677614 48677131 ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1
chr2.4 exon 48678271 48678689 48678271 ID=MS.gene64421.t1.exon3;Parent=MS.gene64421.t1
chr2.4 CDS 48678271 48678689 48678271 ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1
chr2.4 exon 48678773 48678825 48678773 ID=MS.gene64421.t1.exon4;Parent=MS.gene64421.t1
chr2.4 CDS 48678773 48678825 48678773 ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1
Gene Sequence

>MS.gene64421

ATGAACAAGAACAAGTTTCCTTTTACTCCATCACAATGGCAAGAACTTGAACATCAAGCTCTTATTTACAAGTACATGGCTTCTGGTATATCTATTCCACCTGATCTTCTTTTCACCATCAGAAAAAGCTATTTGGACTCTCCTCTTTCTTCAAGACTTTTTCCTAATCAACAACACCAACACTGTAAGTCCTTTCTCTCCCTCTCTATATTCATATGTTTACTGTTAAGAGTAACATAGTTCACATCTTTATATAGACAATTAATAATAATTTTTTCCTTCTTAATTTTTTTTTAAAAAACTTTTCTAAAATGAACAGTTTAATTTAGATTATAAATAAATAAATAAAATTATTAGTAATAATAACTGTTCATAATTTGATTAATAGTTTTTTTTAGACAAATTTGGAAAGTAAGAAATTATTTTATTTATAAAAGTGATATTAATGATCATTTTACGACGATCTTTAAAAAGATTTAAACTCGAGATTAGTATCTCAAACTCGTACCACGGACCTAACACCTTTGATATAGTATACATCTTCGGATGTGTTTGGTTATCCGTTTGCAACACACAAAAGCACGTTTGCACATTTTTCGATGCGTTTTTCCGTGATTTTCAGAAGCTCCAAATACTATCTTTTTTGCTAACATGGTCTTTTGCCGTGATTTCCATCAAACACCGTTTTGCAAACGCTGTACGAAACAGACACTTCCTAAAAGATTATGAATGTATAGAGATAATTTAGTTAAAGGAGTGAAATTATTGTCTCAAGTGTCACAAAATGAGTCTCTTTGACCAAAGGGTTATTTTGATTTTTTTCAGTTGGATGGAACTATCTGCAAATGGGTTTAGGAAGAAAGATAGATCCAGAGCCAGGTAGATGTAGAAGAACAGATGGAAAGAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATATTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTGTAAAAACAACAACAACAACAACAAATACAAATATTAATAATGCTTCATCACTTGGAATTTCATCACTTACCAAAAATAGCCCTGCATCATTAACTAATTCTTCTTCTTTGTCTTTTGAGACTCAACAACATCACCAAAACTATCCTCAAAATTCTTGCTATGGTTCCAATTTGCAACAATCCTTTATGTATCCTCATACAACTTCAAGGTCAACTTTGTCATCTGGTATTGGTTTGTCTTTTGAAGACAATAGTGCTCCCTTGTTTCTTGATAGCAATTCTTGCTCTCAGAATAACACTGATTACAGGTTCGTCTTGAAACCATAGTGTTTGAACTTTGTTTCGGTGTTTTGATAAATAGTCGTTTTTGGAGTAAATAGTCATTTTGGTATTTGAACGTGTATGTCAGTGCCATGTCATTTTTGCAGTGAAGCATAACAAAATTACAAAAACATATGAATATTTTTTTTGTTAGTTAGTTTGTTGGATGTGTCTTTTGAATTACTAACAAAGACAGGCTCGACGATATTTCTGTAATTTCGATACATTAAGAGATTATGATGACATTGTCTTACACATTTCGGTACTAAAATGATTGTTGACTCAAATTTTTTGATAAATATATGACTGCAATATGACTTCAAGTAAATAGTCATTTTGGTTTGTAGATGTGTAACTCGGAAGTTAGTTTGGTAATCGGACGTGTTACGTGTTCTCTGTAAGTCAGTTTGTCTTGAATTTAAAAATATAAGACACGTCCGTTGATTCTTTTTGTAATTTCGATACATTCAAAGAATATAATGGCACCTCACACATTAAGAGATCAAAATGGCTTCTTCAAAAAAAAAAAAAGAGATCAAAATGGCTATTTACTCACAAGATTATGATTGAGACTATGATCTTTAAATGTTTGTGAATTGTGATTGATTCTCTTTGGTTTCTGTTTTCTTCCTTTGTAAAAAAGGAACAGGTATGTGTATGGACAAAAAGAAGAGGTGGATGAGTATGCATTCTTCAAAGAACCTTCTGGTAGCAGTACTATGAAAAGCTTCTCTGCTTCATCAATGGAACATGATCCTTGGCAACTAACACCACTTACTATGAGTTCTTCCTCATCATCTTCTACTTCTTTGAGACAGAGAAGCTTTTCAGCGTTGTCGAATGATTACTCTTGCTTGCAACTTCAGAGCCTTAGTGAACACTCAAAGCAGCATGAGCAAGATGAACCTCAGAAAACTGTTCATCGCTTCTTTGATGAATGGCCACATAAAGGGAGAGATCAATGGCTTGATTTGGATGATAAATCATCTACCACTCAATTATCGATTTCGATTCCATCCTCTGGTCATGATTTTCCAACTTTCACTTCTAGAAATACCCATGGTAATTGAACTTTCATAGAGATTCATATCCATTCGGCTCAATTTCTTTGATAGTACTGTTCTAGGTTTTAAATCATGTTGCAGTTACATCACGATTCTTGATATTGCACTTACATCGTGAATTCGAACATGGTTAG
Protein sequence

>MS.gene64421.t1

MNKNKFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRKSYLDSPLSSRLFPNQQHQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVVKTTTTTTNTNINNASSLGISSLTKNSPASLTNSSSLSFETQQHHQNYPQNSCYGSNLQQSFMYPHTTSRSTLSSGIGLSFEDNSAPLFLDSNSCSQNNTDYRNRYVYGQKEEVDEYAFFKEPSGSSTMKSFSASSMEHDPWQLTPLTMSSSSSSSTSLRQRSFSALSNDYSCLQLQSLSEHSKQHEQDEPQKTVHRFFDEWPHKGRDQWLDLDDKSSTTQLSISIPSSGHDFPTFTSRNTHVTSRFLILHLHREFEHG