Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64421.t1 | XP_024633316.1 | 88.8 | 366 | 31 | 3 | 1 | 365 | 1 | 357 | 2.00E-167 | 598.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64421.t1 | Q8L8A6 | 73.3 | 101 | 23 | 2 | 7 | 107 | 16 | 112 | 1.4e-39 | 165.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64421.t1 | A0A072V671 | 88.8 | 366 | 31 | 3 | 1 | 365 | 1 | 357 | 1.5e-167 | 598.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64421.t1 | TF | GRF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64421.t1 | MTR_2g041430 | 94.536 | 366 | 10 | 4 | 1 | 365 | 1 | 357 | 0.0 | 698 |
MS.gene64421.t1 | MTR_2g041430 | 94.490 | 363 | 10 | 4 | 1 | 362 | 1 | 354 | 0.0 | 692 |
MS.gene64421.t1 | MTR_2g041430 | 94.490 | 363 | 10 | 4 | 1 | 362 | 1 | 354 | 0.0 | 692 |
MS.gene64421.t1 | MTR_4g125490 | 64.042 | 381 | 93 | 14 | 3 | 360 | 5 | 364 | 6.13e-144 | 415 |
MS.gene64421.t1 | MTR_8g020560 | 45.559 | 349 | 155 | 13 | 3 | 333 | 7 | 338 | 2.84e-69 | 221 |
MS.gene64421.t1 | MTR_0001s0490 | 39.714 | 350 | 148 | 13 | 7 | 347 | 25 | 320 | 2.12e-58 | 193 |
MS.gene64421.t1 | MTR_1g017490 | 57.983 | 119 | 42 | 2 | 5 | 119 | 9 | 123 | 1.12e-40 | 150 |
MS.gene64421.t1 | MTR_1g017490 | 57.983 | 119 | 42 | 2 | 5 | 119 | 142 | 256 | 1.89e-40 | 151 |
MS.gene64421.t1 | MTR_5g027030 | 60.177 | 113 | 29 | 2 | 7 | 119 | 16 | 112 | 3.76e-40 | 145 |
MS.gene64421.t1 | MTR_7g104050 | 54.198 | 131 | 45 | 4 | 4 | 125 | 68 | 192 | 5.48e-35 | 132 |
MS.gene64421.t1 | MTR_7g104050 | 54.198 | 131 | 45 | 4 | 4 | 125 | 68 | 192 | 6.47e-35 | 132 |
MS.gene64421.t1 | MTR_3g092330 | 48.246 | 114 | 37 | 3 | 7 | 120 | 113 | 204 | 3.43e-27 | 113 |
MS.gene64421.t1 | MTR_8g035910 | 43.697 | 119 | 45 | 3 | 3 | 119 | 45 | 143 | 6.08e-22 | 97.1 |
MS.gene64421.t1 | MTR_8g035910 | 46.377 | 69 | 37 | 0 | 75 | 143 | 297 | 365 | 3.14e-13 | 70.9 |
MS.gene64421.t1 | MTR_8g035640 | 64.103 | 39 | 14 | 0 | 75 | 113 | 51 | 89 | 1.67e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64421.t1 | AT3G13960 | 71.681 | 113 | 28 | 2 | 7 | 119 | 16 | 124 | 3.62e-55 | 186 |
MS.gene64421.t1 | AT2G06200 | 64.167 | 120 | 36 | 2 | 5 | 117 | 4 | 123 | 4.71e-47 | 160 |
MS.gene64421.t1 | AT2G06200 | 64.167 | 120 | 36 | 2 | 5 | 117 | 43 | 162 | 5.60e-47 | 162 |
MS.gene64421.t1 | AT4G37740 | 58.120 | 117 | 41 | 4 | 5 | 120 | 162 | 271 | 1.15e-38 | 145 |
MS.gene64421.t1 | AT2G36400 | 56.198 | 121 | 50 | 2 | 8 | 127 | 77 | 195 | 1.10e-36 | 137 |
MS.gene64421.t1 | AT2G22840 | 56.897 | 116 | 42 | 4 | 5 | 119 | 131 | 239 | 7.24e-34 | 132 |
MS.gene64421.t1 | AT3G52910 | 55.172 | 116 | 44 | 4 | 8 | 119 | 83 | 194 | 5.38e-33 | 127 |
MS.gene64421.t1 | AT2G06200 | 92.157 | 51 | 2 | 1 | 69 | 117 | 1 | 51 | 3.26e-26 | 103 |
MS.gene64421.t1 | AT5G53660 | 48.246 | 114 | 38 | 2 | 6 | 119 | 58 | 150 | 1.62e-25 | 106 |
MS.gene64421.t1 | AT4G24150 | 44.444 | 117 | 55 | 2 | 8 | 119 | 112 | 223 | 1.17e-23 | 102 |
MS.gene64421.t1 | AT4G24150 | 44.444 | 117 | 55 | 2 | 8 | 119 | 150 | 261 | 1.58e-23 | 102 |
MS.gene64421.t1 | AT4G24150 | 40.288 | 139 | 54 | 3 | 8 | 119 | 150 | 286 | 5.51e-23 | 100 |
MS.gene64421.t1 | AT2G45480 | 40.496 | 121 | 55 | 3 | 3 | 116 | 19 | 129 | 1.11e-18 | 86.3 |
MS.gene64421.t1 | AT2G45480 | 40.496 | 121 | 55 | 3 | 3 | 116 | 19 | 129 | 5.62e-18 | 85.5 |
MS.gene64421.t1 | AT2G45480 | 46.667 | 90 | 33 | 4 | 55 | 144 | 289 | 363 | 6.42e-13 | 70.1 |
MS.gene64421.t1 | AT2G45480 | 40.496 | 121 | 55 | 3 | 3 | 116 | 17 | 127 | 5.83e-18 | 85.5 |
MS.gene64421.t1 | AT2G45480 | 46.667 | 90 | 33 | 4 | 55 | 144 | 287 | 361 | 6.68e-13 | 70.1 |
Find 55 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATAAAGGATTGTTGCAAAT+TGG | 0.210488 | 2.4:-48677473 | None:intergenic |
TGCCATTGTGATGGAGTAAA+AGG | 0.243712 | 2.4:-48676324 | None:intergenic |
CTTTCACAATATTTAGAATC+TGG | 0.287060 | 2.4:-48677238 | None:intergenic |
CAGTGTTGGTGTTGTTGATT+AGG | 0.322488 | 2.4:-48676468 | None:intergenic |
ATTTACAAGTACATGGCTTC+TGG | 0.322552 | 2.4:+48676369 | MS.gene64421:CDS |
GAGAGATCAATGGCTTGATT+TGG | 0.343166 | 2.4:+48678580 | MS.gene64421:CDS |
TTTGATGAATGGCCACATAA+AGG | 0.368324 | 2.4:+48678557 | MS.gene64421:CDS |
AACTATCTGCAAATGGGTTT+AGG | 0.375973 | 2.4:+48677139 | MS.gene64421:CDS |
GCATTCTTCAAAGAACCTTC+TGG | 0.390445 | 2.4:+48678314 | MS.gene64421:CDS |
ATTAATAATGCTTCATCACT+TGG | 0.397780 | 2.4:+48677340 | MS.gene64421:CDS |
TCAACTTTGTCATCTGGTAT+TGG | 0.398620 | 2.4:+48677517 | MS.gene64421:CDS |
GAAGAACAGATGGAAAGAAA+TGG | 0.403362 | 2.4:+48677194 | MS.gene64421:CDS |
CTCAGAATAACACTGATTAC+AGG | 0.412282 | 2.4:+48677593 | MS.gene64421:CDS |
TTGATGAATGGCCACATAAA+GGG | 0.413091 | 2.4:+48678558 | MS.gene64421:CDS |
GAAGAATTAGTTAATGATGC+AGG | 0.421290 | 2.4:-48677388 | None:intergenic |
TTCATCGCTTCTTTGATGAA+TGG | 0.422547 | 2.4:+48678546 | MS.gene64421:CDS |
TCAAGGTCAACTTTGTCATC+TGG | 0.430096 | 2.4:+48677511 | MS.gene64421:CDS |
TGTATCCTCATACAACTTCA+AGG | 0.438634 | 2.4:+48677494 | MS.gene64421:CDS |
AAGCTTCTCTGCTTCATCAA+TGG | 0.443492 | 2.4:+48678352 | MS.gene64421:CDS |
CTTCTACATCTACCTGGCTC+TGG | 0.445022 | 2.4:-48677175 | None:intergenic |
TGGATGGAACTATCTGCAAA+TGG | 0.447963 | 2.4:+48677132 | MS.gene64421:CDS |
TCGATTTCGATTCCATCCTC+TGG | 0.461357 | 2.4:+48678629 | MS.gene64421:CDS |
CTTCCACAGGCTTTCTTGAA+CGG | 0.472599 | 2.4:-48677282 | None:intergenic |
TATCCTCAAAATTCTTGCTA+TGG | 0.474491 | 2.4:+48677448 | MS.gene64421:CDS |
CTGATGGTGAAAAGAAGATC+AGG | 0.476075 | 2.4:-48676405 | None:intergenic |
CATTGATCTCTCCCTTTATG+TGG | 0.488068 | 2.4:-48678569 | None:intergenic |
GTTGACCTTGAAGTTGTATG+AGG | 0.489086 | 2.4:-48677499 | None:intergenic |
AAAAGGAACAGGTATGTGTA+TGG | 0.489899 | 2.4:+48678266 | MS.gene64421:intron |
AGTTGTATGAGGATACATAA+AGG | 0.504350 | 2.4:-48677488 | None:intergenic |
GTATTTCTAGAAGTGAAAGT+TGG | 0.508645 | 2.4:-48678662 | None:intergenic |
AGAAAGATAGATCCAGAGCC+AGG | 0.511253 | 2.4:+48677163 | MS.gene64421:CDS |
GGATGGAACTATCTGCAAAT+GGG | 0.512539 | 2.4:+48677133 | MS.gene64421:CDS |
CATCAATGGAACATGATCCT+TGG | 0.521187 | 2.4:+48678366 | MS.gene64421:CDS |
AGCTCTTATTTACAAGTACA+TGG | 0.521532 | 2.4:+48676362 | MS.gene64421:CDS |
CAAAGAAGTAGAAGATGATG+AGG | 0.529690 | 2.4:-48678417 | None:intergenic |
CACATAAAGGGAGAGATCAA+TGG | 0.535742 | 2.4:+48678570 | MS.gene64421:CDS |
GTAAGTGGTGTTAGTTGCCA+AGG | 0.556427 | 2.4:-48678383 | None:intergenic |
GGTAGATGTAGAAGAACAGA+TGG | 0.565829 | 2.4:+48677184 | MS.gene64421:CDS |
TCAAGTTCTTGCCATTGTGA+TGG | 0.567945 | 2.4:-48676333 | None:intergenic |
AAGAATTAGTTAATGATGCA+GGG | 0.570085 | 2.4:-48677387 | None:intergenic |
GAGGAAGAACTCATAGTAAG+TGG | 0.573735 | 2.4:-48678398 | None:intergenic |
TCTGTTCTTCTACATCTACC+TGG | 0.588963 | 2.4:-48677181 | None:intergenic |
GCTGCTTTGAGTGTTCACTA+AGG | 0.590411 | 2.4:-48678496 | None:intergenic |
TGTGAAAGACACATGCATAG+AGG | 0.590712 | 2.4:+48677253 | MS.gene64421:CDS |
GGAAAATCATGACCAGAGGA+TGG | 0.595251 | 2.4:-48678641 | None:intergenic |
TTCATAGTACTGCTACCAGA+AGG | 0.597595 | 2.4:-48678329 | None:intergenic |
TTCACTTCTAGAAATACCCA+TGG | 0.600872 | 2.4:+48678668 | MS.gene64421:CDS |
AGAATTGCTATCAAGAAACA+AGG | 0.601977 | 2.4:-48677566 | None:intergenic |
ATGGTGAAAAGAAGATCAGG+TGG | 0.629455 | 2.4:-48676402 | None:intergenic |
AATCGAAATCGATAATTGAG+TGG | 0.635985 | 2.4:-48678618 | None:intergenic |
TTACATCGTGAATTCGAACA+TGG | 0.636750 | 2.4:+48678799 | MS.gene64421:CDS |
AGAGAAAGGACTTACAGTGT+TGG | 0.638023 | 2.4:-48676482 | None:intergenic |
AAACCGTTCAAGAAAGCCTG+TGG | 0.641388 | 2.4:+48677279 | MS.gene64421:CDS |
AGTTGGAAAATCATGACCAG+AGG | 0.663324 | 2.4:-48678645 | None:intergenic |
GAATTGCTATCAAGAAACAA+GGG | 0.694882 | 2.4:-48677565 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAGAGATCAAAA+TGG | + | chr2.4:48678149-48678168 | MS.gene64421:intron | 15.0% |
!! | TATAGAGATAATTTAGTTAA+AGG | + | chr2.4:48677038-48677057 | MS.gene64421:intron | 15.0% |
!!! | TAGTTTTTTTTAGACAAATT+TGG | + | chr2.4:48676691-48676710 | MS.gene64421:intron | 15.0% |
!!! | TTATTTTGATTTTTTTCAGT+TGG | + | chr2.4:48677112-48677131 | MS.gene64421:intron | 15.0% |
!! | AAAAAATCAAAATAACCCTT+TGG | - | chr2.4:48677107-48677126 | None:intergenic | 20.0% |
!! | GAAATTACAAAAAGAATCAA+CGG | - | chr2.4:48678068-48678087 | None:intergenic | 20.0% |
!! | GATACATTCAAAGAATATAA+TGG | + | chr2.4:48678088-48678107 | MS.gene64421:intron | 20.0% |
!! | TAAACATATGAATATAGAGA+GGG | - | chr2.4:48676508-48676527 | None:intergenic | 20.0% |
!! | TTAGCAAAAAAGATAGTATT+TGG | - | chr2.4:48676936-48676955 | None:intergenic | 20.0% |
!! | TTTGATATAGTATACATCTT+CGG | + | chr2.4:48676829-48676848 | MS.gene64421:intron | 20.0% |
!!! | CTATACATTCATAATCTTTT+AGG | - | chr2.4:48677023-48677042 | None:intergenic | 20.0% |
!!! | TTTTGATAAATAGTCGTTTT+TGG | + | chr2.4:48677655-48677674 | MS.gene64421:intron | 20.0% |
!!! | TTTTTTGTTAGTTAGTTTGT+TGG | + | chr2.4:48677771-48677790 | MS.gene64421:intron | 20.0% |
! | AAGAATTAGTTAATGATGCA+GGG | - | chr2.4:48677390-48677409 | None:intergenic | 25.0% |
! | ATTAATAATGCTTCATCACT+TGG | + | chr2.4:48677340-48677359 | MS.gene64421:CDS | 25.0% |
! | GAAGATGTATACTATATCAA+AGG | - | chr2.4:48676830-48676849 | None:intergenic | 25.0% |
! | GTAAACATATGAATATAGAG+AGG | - | chr2.4:48676509-48676528 | None:intergenic | 25.0% |
! | TATGAAAGTTCAATTACCAT+GGG | - | chr2.4:48678687-48678706 | None:intergenic | 25.0% |
! | TTTGAATTACTAACAAAGAC+AGG | + | chr2.4:48677802-48677821 | MS.gene64421:intron | 25.0% |
!! | ATAGTGTTTGAACTTTGTTT+CGG | + | chr2.4:48677630-48677649 | MS.gene64421:intron | 25.0% |
!! | CTTCAAGTAAATAGTCATTT+TGG | + | chr2.4:48677945-48677964 | MS.gene64421:intron | 25.0% |
!! | CTTTCACAATATTTAGAATC+TGG | - | chr2.4:48677241-48677260 | None:intergenic | 25.0% |
!! | GTTTTCTTCCTTTGTAAAAA+AGG | + | chr2.4:48678249-48678268 | MS.gene64421:intron | 25.0% |
!!! | AAGAATTTTGAGGATAGTTT+TGG | - | chr2.4:48677444-48677463 | None:intergenic | 25.0% |
!!! | TACTATCTTTTTTGCTAACA+TGG | + | chr2.4:48676938-48676957 | MS.gene64421:intron | 25.0% |
!!! | TATACTATATCAAAGGTGTT+AGG | - | chr2.4:48676823-48676842 | None:intergenic | 25.0% |
!!! | TTTGATTTTTTTCAGTTGGA+TGG | + | chr2.4:48677116-48677135 | MS.gene64421:intron | 25.0% |
!!! | TTTGGAGTAAATAGTCATTT+TGG | + | chr2.4:48677673-48677692 | MS.gene64421:intron | 25.0% |
AATCGAAATCGATAATTGAG+TGG | - | chr2.4:48678621-48678640 | None:intergenic | 30.0% | |
AGAATTGCTATCAAGAAACA+AGG | - | chr2.4:48677569-48677588 | None:intergenic | 30.0% | |
AGTTGTATGAGGATACATAA+AGG | - | chr2.4:48677491-48677510 | None:intergenic | 30.0% | |
CACACATTAAGAGATCAAAA+TGG | + | chr2.4:48678116-48678135 | MS.gene64421:intron | 30.0% | |
CATAAAGGATTGTTGCAAAT+TGG | - | chr2.4:48677476-48677495 | None:intergenic | 30.0% | |
CATAGAGATTCATATCCATT+CGG | + | chr2.4:48678703-48678722 | MS.gene64421:intron | 30.0% | |
CTATGAAAGTTCAATTACCA+TGG | - | chr2.4:48678688-48678707 | None:intergenic | 30.0% | |
GAAACAAAGTTCAAACACTA+TGG | - | chr2.4:48677631-48677650 | None:intergenic | 30.0% | |
GAAGAATTAGTTAATGATGC+AGG | - | chr2.4:48677391-48677410 | None:intergenic | 30.0% | |
GAATTGCTATCAAGAAACAA+GGG | - | chr2.4:48677568-48677587 | None:intergenic | 30.0% | |
TATCCTCAAAATTCTTGCTA+TGG | + | chr2.4:48677448-48677467 | MS.gene64421:CDS | 30.0% | |
TGACATTGTCTTACACATTT+CGG | + | chr2.4:48677868-48677887 | MS.gene64421:intron | 30.0% | |
TTCCTTTGTAAAAAAGGAAC+AGG | + | chr2.4:48678255-48678274 | MS.gene64421:intron | 30.0% | |
! | AGCTCTTATTTACAAGTACA+TGG | + | chr2.4:48676362-48676381 | MS.gene64421:CDS | 30.0% |
! | GAATTGTGATTGATTCTCTT+TGG | + | chr2.4:48678221-48678240 | MS.gene64421:intron | 30.0% |
! | TTCTTTGATAGTACTGTTCT+AGG | + | chr2.4:48678732-48678751 | MS.gene64421:intron | 30.0% |
! | TTTTGATCTCTTAATGTGTG+AGG | - | chr2.4:48678116-48678135 | None:intergenic | 30.0% |
!! | GTATTTCTAGAAGTGAAAGT+TGG | - | chr2.4:48678665-48678684 | None:intergenic | 30.0% |
!!! | TACCTGTTCCTTTTTTACAA+AGG | - | chr2.4:48678260-48678279 | None:intergenic | 30.0% |
AAAAGGAACAGGTATGTGTA+TGG | + | chr2.4:48678266-48678285 | MS.gene64421:intron | 35.0% | |
AAATGAGTCTCTTTGACCAA+AGG | + | chr2.4:48677088-48677107 | MS.gene64421:intron | 35.0% | |
AATGAGTCTCTTTGACCAAA+GGG | + | chr2.4:48677089-48677108 | MS.gene64421:intron | 35.0% | |
ATCAAAGAAATTGAGCCGAA+TGG | - | chr2.4:48678721-48678740 | None:intergenic | 35.0% | |
ATTTACAAGTACATGGCTTC+TGG | + | chr2.4:48676369-48676388 | MS.gene64421:CDS | 35.0% | |
CAAAGAAGTAGAAGATGATG+AGG | - | chr2.4:48678420-48678439 | None:intergenic | 35.0% | |
CACCATCAGAAAAAGCTATT+TGG | + | chr2.4:48676419-48676438 | MS.gene64421:CDS | 35.0% | |
GAAGAACAGATGGAAAGAAA+TGG | + | chr2.4:48677194-48677213 | MS.gene64421:CDS | 35.0% | |
GGAAAAAGTCTTGAAGAAAG+AGG | - | chr2.4:48676450-48676469 | None:intergenic | 35.0% | |
TATACATCTTCGGATGTGTT+TGG | + | chr2.4:48676839-48676858 | MS.gene64421:intron | 35.0% | |
TCAACTTTGTCATCTGGTAT+TGG | + | chr2.4:48677517-48677536 | MS.gene64421:CDS | 35.0% | |
TGTATCCTCATACAACTTCA+AGG | + | chr2.4:48677494-48677513 | MS.gene64421:CDS | 35.0% | |
TGTGTATGGACAAAAAGAAG+AGG | + | chr2.4:48678280-48678299 | MS.gene64421:CDS | 35.0% | |
TTACATCGTGAATTCGAACA+TGG | + | chr2.4:48678799-48678818 | MS.gene64421:CDS | 35.0% | |
TTCATCGCTTCTTTGATGAA+TGG | + | chr2.4:48678546-48678565 | MS.gene64421:CDS | 35.0% | |
TTGATGAATGGCCACATAAA+GGG | + | chr2.4:48678558-48678577 | MS.gene64421:CDS | 35.0% | |
TTTGATGAATGGCCACATAA+AGG | + | chr2.4:48678557-48678576 | MS.gene64421:CDS | 35.0% | |
! | AACTATCTGCAAATGGGTTT+AGG | + | chr2.4:48677139-48677158 | MS.gene64421:CDS | 35.0% |
! | CTCAGAATAACACTGATTAC+AGG | + | chr2.4:48677593-48677612 | MS.gene64421:CDS | 35.0% |
! | GAACCATAGCAAGAATTTTG+AGG | - | chr2.4:48677454-48677473 | None:intergenic | 35.0% |
! | TCGGAAGTTAGTTTGGTAAT+CGG | + | chr2.4:48677984-48678003 | MS.gene64421:intron | 35.0% |
! | TGGTTTGTAGATGTGTAACT+CGG | + | chr2.4:48677965-48677984 | MS.gene64421:intron | 35.0% |
! | TTCACTTCTAGAAATACCCA+TGG | + | chr2.4:48678668-48678687 | MS.gene64421:CDS | 35.0% |
! | TTCCTTTTACTCCATCACAA+TGG | + | chr2.4:48676322-48676341 | MS.gene64421:CDS | 35.0% |
! | TTTGGAGCTTCTGAAAATCA+CGG | - | chr2.4:48676918-48676937 | None:intergenic | 35.0% |
!! | GTCCAAATAGCTTTTTCTGA+TGG | - | chr2.4:48676424-48676443 | None:intergenic | 35.0% |
!! | TAATGATGCAGGGCTATTTT+TGG | - | chr2.4:48677380-48677399 | None:intergenic | 35.0% |
!!! | GTTGTTTTTACAACTTCCAC+AGG | - | chr2.4:48677298-48677317 | None:intergenic | 35.0% |
AAGCTTCTCTGCTTCATCAA+TGG | + | chr2.4:48678352-48678371 | MS.gene64421:CDS | 40.0% | |
ACGGTGTTTGATGGAAATCA+CGG | - | chr2.4:48676971-48676990 | None:intergenic | 40.0% | |
AGAGAAAGGACTTACAGTGT+TGG | - | chr2.4:48676485-48676504 | None:intergenic | 40.0% | |
AGTATCTCAAACTCGTACCA+CGG | + | chr2.4:48676796-48676815 | MS.gene64421:intron | 40.0% | |
AGTTGGAAAATCATGACCAG+AGG | - | chr2.4:48678648-48678667 | None:intergenic | 40.0% | |
ATGGTGAAAAGAAGATCAGG+TGG | - | chr2.4:48676405-48676424 | None:intergenic | 40.0% | |
CACATAAAGGGAGAGATCAA+TGG | + | chr2.4:48678570-48678589 | MS.gene64421:CDS | 40.0% | |
CATCAATGGAACATGATCCT+TGG | + | chr2.4:48678366-48678385 | MS.gene64421:CDS | 40.0% | |
CATTGATCTCTCCCTTTATG+TGG | - | chr2.4:48678572-48678591 | None:intergenic | 40.0% | |
GAATATAGAGAGGGAGAGAA+AGG | - | chr2.4:48676499-48676518 | None:intergenic | 40.0% | |
GAGAGATCAATGGCTTGATT+TGG | + | chr2.4:48678580-48678599 | MS.gene64421:CDS | 40.0% | |
GAGGAAGAACTCATAGTAAG+TGG | - | chr2.4:48678401-48678420 | None:intergenic | 40.0% | |
GCATTCTTCAAAGAACCTTC+TGG | + | chr2.4:48678314-48678333 | MS.gene64421:CDS | 40.0% | |
GCTTCACTGCAAAAATGACA+TGG | - | chr2.4:48677721-48677740 | None:intergenic | 40.0% | |
GGATGGAACTATCTGCAAAT+GGG | + | chr2.4:48677133-48677152 | MS.gene64421:CDS | 40.0% | |
GGTAGATGTAGAAGAACAGA+TGG | + | chr2.4:48677184-48677203 | MS.gene64421:CDS | 40.0% | |
GTATGGACAAAAAGAAGAGG+TGG | + | chr2.4:48678283-48678302 | MS.gene64421:CDS | 40.0% | |
GTGTAACTCGGAAGTTAGTT+TGG | + | chr2.4:48677977-48677996 | MS.gene64421:intron | 40.0% | |
GTTGACCTTGAAGTTGTATG+AGG | - | chr2.4:48677502-48677521 | None:intergenic | 40.0% | |
GTTTGCAAAACGGTGTTTGA+TGG | - | chr2.4:48676980-48676999 | None:intergenic | 40.0% | |
TCAAGGTCAACTTTGTCATC+TGG | + | chr2.4:48677511-48677530 | MS.gene64421:CDS | 40.0% | |
TCAAGTTCTTGCCATTGTGA+TGG | - | chr2.4:48676336-48676355 | None:intergenic | 40.0% | |
TCTGTTCTTCTACATCTACC+TGG | - | chr2.4:48677184-48677203 | None:intergenic | 40.0% | |
TGGATGGAACTATCTGCAAA+TGG | + | chr2.4:48677132-48677151 | MS.gene64421:CDS | 40.0% | |
TGTGAAAGACACATGCATAG+AGG | + | chr2.4:48677253-48677272 | MS.gene64421:CDS | 40.0% | |
TTCATAGTACTGCTACCAGA+AGG | - | chr2.4:48678332-48678351 | None:intergenic | 40.0% | |
TTCGTACAGCGTTTGCAAAA+CGG | - | chr2.4:48676990-48677009 | None:intergenic | 40.0% | |
! | AAGCGATGAACAGTTTTCTG+AGG | - | chr2.4:48678536-48678555 | None:intergenic | 40.0% |
! | CTGATGGTGAAAAGAAGATC+AGG | - | chr2.4:48676408-48676427 | None:intergenic | 40.0% |
! | GTGCTTTTGTGTGTTGCAAA+CGG | - | chr2.4:48676869-48676888 | None:intergenic | 40.0% |
! | TGCCATTGTGATGGAGTAAA+AGG | - | chr2.4:48676327-48676346 | None:intergenic | 40.0% |
!! | CAGTGTTGGTGTTGTTGATT+AGG | - | chr2.4:48676471-48676490 | None:intergenic | 40.0% |
AAACCGTTCAAGAAAGCCTG+TGG | + | chr2.4:48677279-48677298 | MS.gene64421:CDS | 45.0% | |
AGAAAGATAGATCCAGAGCC+AGG | + | chr2.4:48677163-48677182 | MS.gene64421:CDS | 45.0% | |
CTTCCACAGGCTTTCTTGAA+CGG | - | chr2.4:48677285-48677304 | None:intergenic | 45.0% | |
GGAAAATCATGACCAGAGGA+TGG | - | chr2.4:48678644-48678663 | None:intergenic | 45.0% | |
TCGATTTCGATTCCATCCTC+TGG | + | chr2.4:48678629-48678648 | MS.gene64421:CDS | 45.0% | |
! | GCTGCTTTGAGTGTTCACTA+AGG | - | chr2.4:48678499-48678518 | None:intergenic | 45.0% |
! | GTAAGTGGTGTTAGTTGCCA+AGG | - | chr2.4:48678386-48678405 | None:intergenic | 45.0% |
!! | TATCAAAGGTGTTAGGTCCG+TGG | - | chr2.4:48676816-48676835 | None:intergenic | 45.0% |
!!! | TTTTTAAAAAAAAATTAAGA+AGG | - | chr2.4:48676586-48676605 | None:intergenic | 5.0% |
CTTCTACATCTACCTGGCTC+TGG | - | chr2.4:48677178-48677197 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 48676306 | 48678825 | 48676306 | ID=MS.gene64421 |
chr2.4 | mRNA | 48676306 | 48678825 | 48676306 | ID=MS.gene64421.t1;Parent=MS.gene64421 |
chr2.4 | exon | 48676306 | 48676489 | 48676306 | ID=MS.gene64421.t1.exon1;Parent=MS.gene64421.t1 |
chr2.4 | CDS | 48676306 | 48676489 | 48676306 | ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1 |
chr2.4 | exon | 48677131 | 48677614 | 48677131 | ID=MS.gene64421.t1.exon2;Parent=MS.gene64421.t1 |
chr2.4 | CDS | 48677131 | 48677614 | 48677131 | ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1 |
chr2.4 | exon | 48678271 | 48678689 | 48678271 | ID=MS.gene64421.t1.exon3;Parent=MS.gene64421.t1 |
chr2.4 | CDS | 48678271 | 48678689 | 48678271 | ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1 |
chr2.4 | exon | 48678773 | 48678825 | 48678773 | ID=MS.gene64421.t1.exon4;Parent=MS.gene64421.t1 |
chr2.4 | CDS | 48678773 | 48678825 | 48678773 | ID=cds.MS.gene64421.t1;Parent=MS.gene64421.t1 |
Gene Sequence |
Protein sequence |