Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64642.t1 | RHN51853.1 | 42.2 | 277 | 154 | 2 | 11 | 282 | 225 | 500 | 9.70E-61 | 243.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64642.t1 | A0A396HGY8 | 42.2 | 277 | 154 | 2 | 11 | 282 | 225 | 500 | 7.0e-61 | 243.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64642.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64642.t1 | MTR_0091s0080 | 37.091 | 275 | 141 | 3 | 11 | 282 | 227 | 472 | 4.72e-59 | 196 |
| MS.gene64642.t1 | MTR_0091s0090 | 42.512 | 207 | 118 | 1 | 68 | 274 | 4 | 209 | 2.25e-58 | 187 |
| MS.gene64642.t1 | MTR_1g052720 | 32.155 | 283 | 162 | 6 | 9 | 275 | 34 | 302 | 3.29e-44 | 152 |
| MS.gene64642.t1 | MTR_6g465600 | 33.333 | 258 | 145 | 6 | 1 | 242 | 28 | 274 | 1.79e-39 | 140 |
| MS.gene64642.t1 | MTR_0246s0040 | 32.117 | 274 | 156 | 9 | 18 | 288 | 72 | 318 | 3.22e-30 | 116 |
| MS.gene64642.t1 | MTR_1g105780 | 27.803 | 223 | 141 | 3 | 15 | 226 | 38 | 251 | 1.61e-24 | 100 |
| MS.gene64642.t1 | MTR_1g105765 | 27.803 | 223 | 141 | 3 | 15 | 226 | 38 | 251 | 2.61e-24 | 99.4 |
| MS.gene64642.t1 | MTR_1g023840 | 40.594 | 101 | 60 | 0 | 143 | 243 | 10 | 110 | 2.82e-23 | 93.2 |
| MS.gene64642.t1 | MTR_7g110090 | 26.641 | 259 | 165 | 7 | 1 | 245 | 22 | 269 | 7.00e-21 | 90.1 |
| MS.gene64642.t1 | MTR_4g032580 | 28.800 | 250 | 156 | 7 | 5 | 241 | 55 | 295 | 1.13e-18 | 84.3 |
| MS.gene64642.t1 | MTR_4g032560 | 28.800 | 250 | 156 | 7 | 5 | 241 | 55 | 295 | 1.19e-18 | 84.3 |
| MS.gene64642.t1 | MTR_4g062370 | 25.106 | 235 | 155 | 5 | 1 | 223 | 26 | 251 | 8.17e-17 | 80.9 |
| MS.gene64642.t1 | MTR_1g047540 | 28.436 | 211 | 128 | 7 | 44 | 245 | 58 | 254 | 3.95e-16 | 78.6 |
| MS.gene64642.t1 | MTR_1g087870 | 24.651 | 215 | 145 | 4 | 44 | 242 | 6 | 219 | 2.72e-15 | 74.3 |
| MS.gene64642.t1 | MTR_1g084880 | 26.271 | 236 | 145 | 5 | 15 | 232 | 37 | 261 | 2.87e-15 | 74.7 |
| MS.gene64642.t1 | MTR_3g048970 | 26.160 | 237 | 144 | 5 | 15 | 232 | 37 | 261 | 4.04e-15 | 74.3 |
| MS.gene64642.t1 | MTR_2g038740 | 26.766 | 269 | 157 | 8 | 15 | 254 | 37 | 294 | 6.77e-15 | 75.1 |
| MS.gene64642.t1 | MTR_3g452180 | 25.824 | 182 | 119 | 4 | 77 | 245 | 7 | 185 | 1.27e-14 | 71.2 |
| MS.gene64642.t1 | MTR_2g100360 | 25.604 | 207 | 133 | 4 | 44 | 232 | 58 | 261 | 1.97e-13 | 69.3 |
| MS.gene64642.t1 | MTR_6g033605 | 32.143 | 84 | 56 | 1 | 166 | 248 | 30 | 113 | 4.91e-13 | 64.7 |
| MS.gene64642.t1 | MTR_3g085990 | 24.786 | 234 | 140 | 7 | 1 | 233 | 23 | 221 | 1.00e-12 | 66.6 |
| MS.gene64642.t1 | MTR_4g117740 | 26.531 | 147 | 90 | 2 | 44 | 190 | 69 | 197 | 2.91e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGTGGCAAGGATTTC+TGG | 0.139608 | 1.4:+53595751 | None:intergenic |
| CAATCCAGCCTTGTTTCTTA+TGG | 0.243933 | 1.4:+53596034 | None:intergenic |
| TTAGTACAATTGCACTAATA+AGG | 0.286839 | 1.4:+53596714 | None:intergenic |
| ATCCATGGGTGCAGTGTATT+GGG | 0.290852 | 1.4:+53595526 | None:intergenic |
| CCGAGGTTCATTACTTCATC+AGG | 0.337428 | 1.4:-53595972 | MS.gene64642:CDS |
| GATATATCGGATAATGGATA+TGG | 0.364913 | 1.4:+53596005 | None:intergenic |
| CCTACCACACTTACGATTGT+TGG | 0.366401 | 1.4:-53595729 | MS.gene64642:CDS |
| ACCTCTGCGATGTGCAAATC+AGG | 0.368835 | 1.4:+53595622 | None:intergenic |
| ACATCGCAGAGGTTGGTTGC+AGG | 0.375369 | 1.4:-53595612 | MS.gene64642:CDS |
| ACAACAATGATATTGTTGTT+TGG | 0.386359 | 1.4:+53596185 | None:intergenic |
| GATATTTATAACATTGTAGA+TGG | 0.391221 | 1.4:-53596104 | MS.gene64642:CDS |
| GACTTCGTCTGATGTCCTCT+CGG | 0.399084 | 1.4:-53595904 | MS.gene64642:CDS |
| TATCCATGGGTGCAGTGTAT+TGG | 0.399336 | 1.4:+53595525 | None:intergenic |
| ACTTCAGACAAGGCTGGTCT+AGG | 0.399428 | 1.4:-53596133 | MS.gene64642:CDS |
| GCAAGGGATATATCGGATAA+TGG | 0.403725 | 1.4:+53595999 | None:intergenic |
| ATGCTATGATTGGTGGTGAT+TGG | 0.409098 | 1.4:-53595647 | MS.gene64642:CDS |
| CATAAGAAACAAGGCTGGAT+TGG | 0.419848 | 1.4:-53596033 | MS.gene64642:CDS |
| AACCAGACTTTGCCGTGGTA+TGG | 0.440028 | 1.4:-53595780 | MS.gene64642:intron |
| AAACCTATGGTCAGCGGCAG+TGG | 0.455398 | 1.4:-53595495 | MS.gene64642:CDS |
| CGGCAACGCAAGGGATATAT+CGG | 0.461190 | 1.4:+53595992 | None:intergenic |
| GACAAAGATAACACAGTCCT+TGG | 0.465488 | 1.4:-53595561 | MS.gene64642:CDS |
| CTGTGCGAAGGGACCTGTCT+CGG | 0.479542 | 1.4:-53596789 | MS.gene64642:CDS |
| TAGGTTTCACATAGTATCCA+TGG | 0.490660 | 1.4:+53595511 | None:intergenic |
| ATGGTCATGAGTAGTAGATT+AGG | 0.500878 | 1.4:+53596053 | None:intergenic |
| TGGGTCTATCTGAAATATGC+GGG | 0.502250 | 1.4:-53596077 | MS.gene64642:CDS |
| TTGGTCCGAACGGCTGTACA+TGG | 0.502745 | 1.4:-53595710 | MS.gene64642:CDS |
| GAAGGGACCTGTCTCGGTTG+AGG | 0.505460 | 1.4:-53596783 | MS.gene64642:CDS |
| TCACCACCAATCATAGCATA+AGG | 0.511917 | 1.4:+53595651 | None:intergenic |
| ACTTCGTCTGATGTCCTCTC+GGG | 0.511997 | 1.4:-53595903 | MS.gene64642:CDS |
| CATCTCCATGTACAGCCGTT+CGG | 0.512529 | 1.4:+53595705 | None:intergenic |
| GAGTATGCTGGAACAGATGT+CGG | 0.514049 | 1.4:-53595424 | MS.gene64642:CDS |
| AATATGCCTTATGCTATGAT+TGG | 0.515256 | 1.4:-53595657 | MS.gene64642:CDS |
| GATAAGTCCTCAACCGAGAC+AGG | 0.525131 | 1.4:+53596776 | None:intergenic |
| CGACCACTGCCGCTGACCAT+AGG | 0.527761 | 1.4:+53595492 | None:intergenic |
| ACCCCAATACACTGCACCCA+TGG | 0.533195 | 1.4:-53595528 | MS.gene64642:CDS |
| CAGTGGTCGATATGTGTACC+AGG | 0.539166 | 1.4:-53595478 | MS.gene64642:CDS |
| TAATGAACCTCGGCAACGCA+AGG | 0.541750 | 1.4:+53595982 | None:intergenic |
| TGATGTCCTCTCGGGCACTT+TGG | 0.543138 | 1.4:-53595895 | MS.gene64642:intron |
| TTGCAAGGCGAAGAGTATGC+TGG | 0.545573 | 1.4:-53595436 | MS.gene64642:CDS |
| ATAACATTGTAGATGGTGCA+TGG | 0.547247 | 1.4:-53596097 | MS.gene64642:CDS |
| CGAGGTTCATTACTTCATCA+GGG | 0.547766 | 1.4:-53595971 | MS.gene64642:CDS |
| CATATTATTTGCAACAGCGA+AGG | 0.553325 | 1.4:+53595674 | None:intergenic |
| CTTCAGACAAGGCTGGTCTA+GGG | 0.553757 | 1.4:-53596132 | MS.gene64642:CDS |
| AGTATGCTGGAACAGATGTC+GGG | 0.557360 | 1.4:-53595423 | MS.gene64642:CDS |
| CTTACGATTGTTGGTCCGAA+CGG | 0.558198 | 1.4:-53595720 | MS.gene64642:CDS |
| GATTTGCACATCGCAGAGGT+TGG | 0.560790 | 1.4:-53595619 | MS.gene64642:CDS |
| GGACTGTGTTATCTTTGTCA+TGG | 0.561082 | 1.4:+53595565 | None:intergenic |
| TGGATACTATGTGAAACCTA+TGG | 0.563204 | 1.4:-53595508 | MS.gene64642:CDS |
| TGCAGTGTATTGGGGTATGT+CGG | 0.565836 | 1.4:+53595535 | None:intergenic |
| ATATATCCCTTGCGTTGCCG+AGG | 0.568869 | 1.4:-53595989 | MS.gene64642:CDS |
| TGTGGTAGGTTTCTGTGGCA+AGG | 0.569531 | 1.4:+53595743 | None:intergenic |
| CTACTTCTTTGCAAAACTGA+AGG | 0.569566 | 1.4:+53596243 | None:intergenic |
| TAACATTGTAGATGGTGCAT+GGG | 0.570614 | 1.4:-53596096 | MS.gene64642:CDS |
| ACAAGGCTGGTCTAGGGTGA+AGG | 0.576887 | 1.4:-53596126 | MS.gene64642:CDS |
| CCAACAATCGTAAGTGTGGT+AGG | 0.580385 | 1.4:+53595729 | None:intergenic |
| CGAGACAGGTCCCTTCGCAC+AGG | 0.583465 | 1.4:+53596790 | None:intergenic |
| AGGTCTACTTCAGACAAGGC+TGG | 0.585540 | 1.4:-53596139 | MS.gene64642:CDS |
| TCACTATCTCAAATATTGCA+AGG | 0.596203 | 1.4:-53595451 | MS.gene64642:CDS |
| ATGACCATAAGAAACAAGGC+TGG | 0.597597 | 1.4:-53596038 | MS.gene64642:CDS |
| CGACCTCGATCCTGTGCGAA+GGG | 0.601460 | 1.4:-53596800 | MS.gene64642:CDS |
| ATGCCTTATGCTATGATTGG+TGG | 0.601798 | 1.4:-53595654 | MS.gene64642:CDS |
| TTGGGGTATGTCGGAAACCA+AGG | 0.606539 | 1.4:+53595544 | None:intergenic |
| AATGAACCTCGGCAACGCAA+GGG | 0.607154 | 1.4:+53595983 | None:intergenic |
| GTAAGTGTGGTAGGTTTCTG+TGG | 0.617237 | 1.4:+53595738 | None:intergenic |
| AGGTTTCACATAGTATCCAT+GGG | 0.622147 | 1.4:+53595512 | None:intergenic |
| CAACAGCGAACTTAACTGCA+TGG | 0.624703 | 1.4:+53595589 | None:intergenic |
| TCCATGGGTGCAGTGTATTG+GGG | 0.627336 | 1.4:+53595527 | None:intergenic |
| ACCTGATTTGCACATCGCAG+AGG | 0.634639 | 1.4:-53595623 | MS.gene64642:CDS |
| ATGGGTCTATCTGAAATATG+CGG | 0.636801 | 1.4:-53596078 | MS.gene64642:CDS |
| ACGACCTCGATCCTGTGCGA+AGG | 0.639634 | 1.4:-53596801 | MS.gene64642:CDS |
| GGTCCCTTCGCACAGGATCG+AGG | 0.647508 | 1.4:+53596797 | None:intergenic |
| TTCTGGCAGAAGCCATACCA+CGG | 0.648051 | 1.4:+53595768 | None:intergenic |
| GGCAAGGTCTACTTCAGACA+AGG | 0.649008 | 1.4:-53596143 | MS.gene64642:CDS |
| CCTGATGAAGTAATGAACCT+CGG | 0.649312 | 1.4:+53595972 | None:intergenic |
| GAGGTTCATTACTTCATCAG+GGG | 0.659487 | 1.4:-53595970 | MS.gene64642:CDS |
| ACTCATGACCATAAGAAACA+AGG | 0.663177 | 1.4:-53596042 | MS.gene64642:CDS |
| TCAAAATCTTGACAGATGTG+CGG | 0.663839 | 1.4:+53595925 | None:intergenic |
| CGGACCAACAATCGTAAGTG+TGG | 0.667344 | 1.4:+53595725 | None:intergenic |
| ATTTGAGATAGTGATTGACC+TGG | 0.673697 | 1.4:+53595460 | None:intergenic |
| GGGTCTATCTGAAATATGCG+GGG | 0.673953 | 1.4:-53596076 | MS.gene64642:CDS |
| TATATACCAAAGTGCCCGAG+AGG | 0.678235 | 1.4:+53595889 | None:intergenic |
| TGTTTAACCAGACTTTGCCG+TGG | 0.679547 | 1.4:-53595785 | MS.gene64642:intron |
| TATGTGAAACCTATGGTCAG+CGG | 0.713139 | 1.4:-53595501 | MS.gene64642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAATATAATTAGATATT+TGG | - | chr1.4:53596377-53596396 | MS.gene64642:intron | 15.0% |
| !! | TACATTCTAATTTGAATATA+TGG | - | chr1.4:53595634-53595653 | MS.gene64642:CDS | 15.0% |
| !!! | TATGTTAACATTTTCTATTA+TGG | - | chr1.4:53595909-53595928 | MS.gene64642:CDS | 15.0% |
| !! | ATGTTAACATAAATTTATGC+CGG | + | chr1.4:53595900-53595919 | None:intergenic | 20.0% |
| !! | GATATTTATAACATTGTAGA+TGG | - | chr1.4:53596126-53596145 | MS.gene64642:CDS | 20.0% |
| !!! | AACTAACGTACAAATTTTTT+CGG | + | chr1.4:53595799-53595818 | None:intergenic | 20.0% |
| ! | ATTTCGTTCATTCGATTATA+AGG | - | chr1.4:53596402-53596421 | MS.gene64642:intron | 25.0% |
| ! | GTTTCCTATCTAATATCATA+AGG | - | chr1.4:53595931-53595950 | MS.gene64642:CDS | 25.0% |
| ! | TTAGTACAATTGCACTAATA+AGG | + | chr1.4:53595519-53595538 | None:intergenic | 25.0% |
| !! | AAATTTTCACGACAACAATA+AGG | - | chr1.4:53595607-53595626 | MS.gene64642:CDS | 25.0% |
| !! | ACAACAATGATATTGTTGTT+TGG | + | chr1.4:53596048-53596067 | None:intergenic | 25.0% |
| !! | GGTATATAATTTGCACTAAT+TGG | - | chr1.4:53596356-53596375 | MS.gene64642:intron | 25.0% |
| AAGGTTATCTTACTGTTTGT+TGG | - | chr1.4:53596421-53596440 | MS.gene64642:intron | 30.0% | |
| AATATGCCTTATGCTATGAT+TGG | - | chr1.4:53596573-53596592 | MS.gene64642:intron | 30.0% | |
| AGTTATCTTAAACTCTGTCT+AGG | - | chr1.4:53595756-53595775 | MS.gene64642:CDS | 30.0% | |
| CACACCTTATGATATTAGAT+AGG | + | chr1.4:53595938-53595957 | None:intergenic | 30.0% | |
| CAGATATACTTTCTTATGTC+CGG | - | chr1.4:53595878-53595897 | MS.gene64642:intron | 30.0% | |
| GTTGAAGTTCAGAAAAAGAA+TGG | - | chr1.4:53596066-53596085 | MS.gene64642:CDS | 30.0% | |
| TCACTATCTCAAATATTGCA+AGG | - | chr1.4:53596779-53596798 | MS.gene64642:CDS | 30.0% | |
| TCTATTACTCTCTACAAATC+CGG | + | chr1.4:53595692-53595711 | None:intergenic | 30.0% | |
| ! | AAACAAACTTGGTGGTTAAA+AGG | + | chr1.4:53595562-53595581 | None:intergenic | 30.0% |
| ! | TGTCCTTATTTAGCAGTTAA+AGG | - | chr1.4:53595956-53595975 | MS.gene64642:CDS | 30.0% |
| ! | TTAACCACCAAGTTTGTTTA+TGG | - | chr1.4:53595563-53595582 | MS.gene64642:CDS | 30.0% |
| !! | GATATATCGGATAATGGATA+TGG | + | chr1.4:53596228-53596247 | None:intergenic | 30.0% |
| !!! | ATTTGTACGTTAGTTTTGTG+CGG | - | chr1.4:53595804-53595823 | MS.gene64642:intron | 30.0% |
| ACTCATGACCATAAGAAACA+AGG | - | chr1.4:53596188-53596207 | MS.gene64642:CDS | 35.0% | |
| AGGTTTCACATAGTATCCAT+GGG | + | chr1.4:53596721-53596740 | None:intergenic | 35.0% | |
| AGTTCAGAAAAAGAATGGCA+AGG | - | chr1.4:53596071-53596090 | MS.gene64642:CDS | 35.0% | |
| ATAACATTGTAGATGGTGCA+TGG | - | chr1.4:53596133-53596152 | MS.gene64642:CDS | 35.0% | |
| ATGGTCATGAGTAGTAGATT+AGG | + | chr1.4:53596180-53596199 | None:intergenic | 35.0% | |
| CATATTATTTGCAACAGCGA+AGG | + | chr1.4:53596559-53596578 | None:intergenic | 35.0% | |
| CTACTTCTTTGCAAAACTGA+AGG | + | chr1.4:53595990-53596009 | None:intergenic | 35.0% | |
| TAACATTGTAGATGGTGCAT+GGG | - | chr1.4:53596134-53596153 | MS.gene64642:CDS | 35.0% | |
| TAGGTTTCACATAGTATCCA+TGG | + | chr1.4:53596722-53596741 | None:intergenic | 35.0% | |
| TCAAAATCTTGACAGATGTG+CGG | + | chr1.4:53596308-53596327 | None:intergenic | 35.0% | |
| TCGCCTTTAACTGCTAAATA+AGG | + | chr1.4:53595962-53595981 | None:intergenic | 35.0% | |
| TGGATACTATGTGAAACCTA+TGG | - | chr1.4:53596722-53596741 | MS.gene64642:CDS | 35.0% | |
| TTATTTAGCAGTTAAAGGCG+AGG | - | chr1.4:53595961-53595980 | MS.gene64642:CDS | 35.0% | |
| ! | ATATGGTTGAAGAGTGTAAG+TGG | - | chr1.4:53595651-53595670 | MS.gene64642:CDS | 35.0% |
| ! | ATGGGTCTATCTGAAATATG+CGG | - | chr1.4:53596152-53596171 | MS.gene64642:CDS | 35.0% |
| ! | ATTTGAGATAGTGATTGACC+TGG | + | chr1.4:53596773-53596792 | None:intergenic | 35.0% |
| ! | CATGTCTGAAATAGAAACCA+TGG | - | chr1.4:53595840-53595859 | MS.gene64642:intron | 35.0% |
| ! | CTTCAGTTTTGCAAAGAAGT+AGG | - | chr1.4:53595988-53596007 | MS.gene64642:CDS | 35.0% |
| AACGCAGCCATAAACAAACT+TGG | + | chr1.4:53595573-53595592 | None:intergenic | 40.0% | |
| ATGACCATAAGAAACAAGGC+TGG | - | chr1.4:53596192-53596211 | MS.gene64642:CDS | 40.0% | |
| ATGCCTTATGCTATGATTGG+TGG | - | chr1.4:53596576-53596595 | MS.gene64642:intron | 40.0% | |
| CATAAGAAACAAGGCTGGAT+TGG | - | chr1.4:53596197-53596216 | MS.gene64642:CDS | 40.0% | |
| CCTGATGAAGTAATGAACCT+CGG | + | chr1.4:53596261-53596280 | None:intergenic | 40.0% | |
| CGAGGTTCATTACTTCATCA+GGG | - | chr1.4:53596259-53596278 | MS.gene64642:intron | 40.0% | |
| GACAAAGATAACACAGTCCT+TGG | - | chr1.4:53596669-53596688 | MS.gene64642:intron | 40.0% | |
| GAGGTTCATTACTTCATCAG+GGG | - | chr1.4:53596260-53596279 | MS.gene64642:intron | 40.0% | |
| GCAAGGGATATATCGGATAA+TGG | + | chr1.4:53596234-53596253 | None:intergenic | 40.0% | |
| GGACTGTGTTATCTTTGTCA+TGG | + | chr1.4:53596668-53596687 | None:intergenic | 40.0% | |
| GTGGATAAAATGATGCAGAC+CGG | - | chr1.4:53595670-53595689 | MS.gene64642:CDS | 40.0% | |
| TATGTGAAACCTATGGTCAG+CGG | - | chr1.4:53596729-53596748 | MS.gene64642:CDS | 40.0% | |
| TCACCACCAATCATAGCATA+AGG | + | chr1.4:53596582-53596601 | None:intergenic | 40.0% | |
| TGACAGATAAAGTTCAGCCA+TGG | + | chr1.4:53595860-53595879 | None:intergenic | 40.0% | |
| TGCGGAAAAAATGCACTAAC+TGG | + | chr1.4:53596290-53596309 | None:intergenic | 40.0% | |
| ! | TGGGTCTATCTGAAATATGC+GGG | - | chr1.4:53596153-53596172 | MS.gene64642:CDS | 40.0% |
| !! | ATGCTATGATTGGTGGTGAT+TGG | - | chr1.4:53596583-53596602 | MS.gene64642:intron | 40.0% |
| !! | CAATCCAGCCTTGTTTCTTA+TGG | + | chr1.4:53596199-53596218 | None:intergenic | 40.0% |
| AGTATGCTGGAACAGATGTC+GGG | - | chr1.4:53596807-53596826 | MS.gene64642:CDS | 45.0% | |
| ATCCATGGGTGCAGTGTATT+GGG | + | chr1.4:53596707-53596726 | None:intergenic | 45.0% | |
| CAACAGCGAACTTAACTGCA+TGG | + | chr1.4:53596644-53596663 | None:intergenic | 45.0% | |
| CCAACAATCGTAAGTGTGGT+AGG | + | chr1.4:53596504-53596523 | None:intergenic | 45.0% | |
| CCGAGGTTCATTACTTCATC+AGG | - | chr1.4:53596258-53596277 | MS.gene64642:intron | 45.0% | |
| CCTACCACACTTACGATTGT+TGG | - | chr1.4:53596501-53596520 | MS.gene64642:intron | 45.0% | |
| CTTACGATTGTTGGTCCGAA+CGG | - | chr1.4:53596510-53596529 | MS.gene64642:intron | 45.0% | |
| GAGTATGCTGGAACAGATGT+CGG | - | chr1.4:53596806-53596825 | MS.gene64642:CDS | 45.0% | |
| GCAGCCATAAACAAACTTGG+TGG | + | chr1.4:53595570-53595589 | None:intergenic | 45.0% | |
| GTAAGTGTGGTAGGTTTCTG+TGG | + | chr1.4:53596495-53596514 | None:intergenic | 45.0% | |
| GTTTCTGTGGCAAGGATTTC+TGG | + | chr1.4:53596482-53596501 | None:intergenic | 45.0% | |
| TATCCATGGGTGCAGTGTAT+TGG | + | chr1.4:53596708-53596727 | None:intergenic | 45.0% | |
| TGCAGTGTATTGGGGTATGT+CGG | + | chr1.4:53596698-53596717 | None:intergenic | 45.0% | |
| TGTTTAACCAGACTTTGCCG+TGG | - | chr1.4:53596445-53596464 | MS.gene64642:intron | 45.0% | |
| ! | GGGTCTATCTGAAATATGCG+GGG | - | chr1.4:53596154-53596173 | MS.gene64642:CDS | 45.0% |
| ! | TATATACCAAAGTGCCCGAG+AGG | + | chr1.4:53596344-53596363 | None:intergenic | 45.0% |
| !!! | TGTACGTTAGTTTTGTGCGG+TGG | - | chr1.4:53595807-53595826 | MS.gene64642:intron | 45.0% |
| AACCAGACTTTGCCGTGGTA+TGG | - | chr1.4:53596450-53596469 | MS.gene64642:intron | 50.0% | |
| AATGAACCTCGGCAACGCAA+GGG | + | chr1.4:53596250-53596269 | None:intergenic | 50.0% | |
| ACCTCTGCGATGTGCAAATC+AGG | + | chr1.4:53596611-53596630 | None:intergenic | 50.0% | |
| ACTTCGTCTGATGTCCTCTC+GGG | - | chr1.4:53596327-53596346 | MS.gene64642:intron | 50.0% | |
| AGGTCTACTTCAGACAAGGC+TGG | - | chr1.4:53596091-53596110 | MS.gene64642:CDS | 50.0% | |
| ATATATCCCTTGCGTTGCCG+AGG | - | chr1.4:53596241-53596260 | MS.gene64642:CDS | 50.0% | |
| CAGTGGTCGATATGTGTACC+AGG | - | chr1.4:53596752-53596771 | MS.gene64642:CDS | 50.0% | |
| CATCTCCATGTACAGCCGTT+CGG | + | chr1.4:53596528-53596547 | None:intergenic | 50.0% | |
| CGGACCAACAATCGTAAGTG+TGG | + | chr1.4:53596508-53596527 | None:intergenic | 50.0% | |
| CGGCAACGCAAGGGATATAT+CGG | + | chr1.4:53596241-53596260 | None:intergenic | 50.0% | |
| GACTTCGTCTGATGTCCTCT+CGG | - | chr1.4:53596326-53596345 | MS.gene64642:intron | 50.0% | |
| GATAAGTCCTCAACCGAGAC+AGG | + | chr1.4:53595457-53595476 | None:intergenic | 50.0% | |
| GATTTGCACATCGCAGAGGT+TGG | - | chr1.4:53596611-53596630 | MS.gene64642:intron | 50.0% | |
| GGCAAGGTCTACTTCAGACA+AGG | - | chr1.4:53596087-53596106 | MS.gene64642:CDS | 50.0% | |
| TAATGAACCTCGGCAACGCA+AGG | + | chr1.4:53596251-53596270 | None:intergenic | 50.0% | |
| TCCATGGGTGCAGTGTATTG+GGG | + | chr1.4:53596706-53596725 | None:intergenic | 50.0% | |
| TGTGGTAGGTTTCTGTGGCA+AGG | + | chr1.4:53596490-53596509 | None:intergenic | 50.0% | |
| TTCTGGCAGAAGCCATACCA+CGG | + | chr1.4:53596465-53596484 | None:intergenic | 50.0% | |
| TTGGGGTATGTCGGAAACCA+AGG | + | chr1.4:53596689-53596708 | None:intergenic | 50.0% | |
| ! | ACCTGATTTGCACATCGCAG+AGG | - | chr1.4:53596607-53596626 | MS.gene64642:intron | 50.0% |
| ! | TTGCAAGGCGAAGAGTATGC+TGG | - | chr1.4:53596794-53596813 | MS.gene64642:CDS | 50.0% |
| !! | ACTTCAGACAAGGCTGGTCT+AGG | - | chr1.4:53596097-53596116 | MS.gene64642:CDS | 50.0% |
| !! | CTTCAGACAAGGCTGGTCTA+GGG | - | chr1.4:53596098-53596117 | MS.gene64642:CDS | 50.0% |
| AAACCTATGGTCAGCGGCAG+TGG | - | chr1.4:53596735-53596754 | MS.gene64642:CDS | 55.0% | |
| ACCCCAATACACTGCACCCA+TGG | - | chr1.4:53596702-53596721 | MS.gene64642:intron | 55.0% | |
| AGCCATACCACGGCAAAGTC+TGG | + | chr1.4:53596455-53596474 | None:intergenic | 55.0% | |
| TGATGTCCTCTCGGGCACTT+TGG | - | chr1.4:53596335-53596354 | MS.gene64642:intron | 55.0% | |
| TTGGTCCGAACGGCTGTACA+TGG | - | chr1.4:53596520-53596539 | MS.gene64642:intron | 55.0% | |
| ! | ACATCGCAGAGGTTGGTTGC+AGG | - | chr1.4:53596618-53596637 | MS.gene64642:intron | 55.0% |
| !! | ACAAGGCTGGTCTAGGGTGA+AGG | - | chr1.4:53596104-53596123 | MS.gene64642:CDS | 55.0% |
| ACGACCTCGATCCTGTGCGA+AGG | - | chr1.4:53595429-53595448 | MS.gene64642:CDS | 60.0% | |
| CGACCTCGATCCTGTGCGAA+GGG | - | chr1.4:53595430-53595449 | MS.gene64642:CDS | 60.0% | |
| CTGTGCGAAGGGACCTGTCT+CGG | - | chr1.4:53595441-53595460 | MS.gene64642:CDS | 60.0% | |
| GAAGGGACCTGTCTCGGTTG+AGG | - | chr1.4:53595447-53595466 | MS.gene64642:CDS | 60.0% | |
| CGACCACTGCCGCTGACCAT+AGG | + | chr1.4:53596741-53596760 | None:intergenic | 65.0% | |
| CGAGACAGGTCCCTTCGCAC+AGG | + | chr1.4:53595443-53595462 | None:intergenic | 65.0% | |
| GGTCCCTTCGCACAGGATCG+AGG | + | chr1.4:53595436-53595455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53595419 | 53596833 | 53595419 | ID=MS.gene64642 |
| chr1.4 | mRNA | 53595419 | 53596833 | 53595419 | ID=MS.gene64642.t1;Parent=MS.gene64642 |
| chr1.4 | exon | 53596721 | 53596833 | 53596721 | ID=MS.gene64642.t1.exon1;Parent=MS.gene64642.t1 |
| chr1.4 | CDS | 53596721 | 53596833 | 53596721 | ID=cds.MS.gene64642.t1;Parent=MS.gene64642.t1 |
| chr1.4 | exon | 53595896 | 53596274 | 53595896 | ID=MS.gene64642.t1.exon2;Parent=MS.gene64642.t1 |
| chr1.4 | CDS | 53595896 | 53596274 | 53595896 | ID=cds.MS.gene64642.t1;Parent=MS.gene64642.t1 |
| chr1.4 | exon | 53595419 | 53595796 | 53595419 | ID=MS.gene64642.t1.exon3;Parent=MS.gene64642.t1 |
| chr1.4 | CDS | 53595419 | 53595796 | 53595419 | ID=cds.MS.gene64642.t1;Parent=MS.gene64642.t1 |
| Gene Sequence |
| Protein sequence |
