Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64651.t1 | RHN60862.1 | 89.3 | 112 | 10 | 2 | 1 | 112 | 23 | 132 | 9.90E-46 | 192.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64651.t1 | O50055 | 44.4 | 54 | 30 | 0 | 5 | 58 | 278 | 331 | 3.9e-06 | 52.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64651.t1 | G7JSL7 | 89.3 | 112 | 10 | 2 | 1 | 112 | 133 | 242 | 7.2e-46 | 192.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64651.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64651.t1 | MTR_4g061823 | 89.286 | 112 | 10 | 2 | 1 | 112 | 133 | 242 | 5.56e-58 | 179 |
MS.gene64651.t1 | MTR_4g061910 | 89.286 | 112 | 10 | 2 | 1 | 112 | 133 | 242 | 5.56e-58 | 179 |
MS.gene64651.t1 | MTR_2g096080 | 64.286 | 112 | 36 | 3 | 1 | 112 | 144 | 251 | 8.37e-39 | 130 |
MS.gene64651.t1 | MTR_1g044785 | 52.326 | 86 | 39 | 2 | 2 | 86 | 123 | 207 | 1.29e-20 | 83.2 |
MS.gene64651.t1 | MTR_8g098725 | 72.000 | 50 | 14 | 0 | 8 | 57 | 224 | 273 | 2.03e-20 | 84.0 |
MS.gene64651.t1 | MTR_8g098725 | 72.000 | 50 | 14 | 0 | 8 | 57 | 220 | 269 | 2.08e-20 | 84.0 |
MS.gene64651.t1 | MTR_1g073350 | 70.000 | 50 | 15 | 0 | 9 | 58 | 312 | 361 | 7.97e-19 | 80.5 |
MS.gene64651.t1 | MTR_2g068730 | 69.231 | 52 | 16 | 0 | 8 | 59 | 158 | 209 | 3.91e-18 | 77.0 |
MS.gene64651.t1 | MTR_5g010120 | 68.000 | 50 | 16 | 0 | 8 | 57 | 168 | 217 | 2.95e-17 | 74.7 |
MS.gene64651.t1 | MTR_3g091340 | 61.224 | 49 | 19 | 0 | 9 | 57 | 197 | 245 | 3.21e-16 | 72.0 |
MS.gene64651.t1 | MTR_3g091340 | 61.224 | 49 | 19 | 0 | 9 | 57 | 190 | 238 | 3.61e-16 | 71.6 |
MS.gene64651.t1 | MTR_3g091340 | 61.224 | 49 | 19 | 0 | 9 | 57 | 226 | 274 | 6.39e-16 | 71.2 |
MS.gene64651.t1 | MTR_1g008220 | 56.000 | 50 | 22 | 0 | 9 | 58 | 228 | 277 | 1.03e-15 | 70.9 |
MS.gene64651.t1 | MTR_1g013450 | 47.368 | 57 | 30 | 0 | 5 | 61 | 247 | 303 | 6.17e-12 | 60.8 |
MS.gene64651.t1 | MTR_7g018170 | 44.444 | 54 | 30 | 0 | 5 | 58 | 319 | 372 | 6.65e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64651.t1 | AT5G41380 | 57.143 | 77 | 21 | 1 | 8 | 84 | 210 | 274 | 2.88e-23 | 91.7 |
MS.gene64651.t1 | AT1G63820 | 67.273 | 55 | 18 | 0 | 8 | 62 | 187 | 241 | 9.85e-22 | 87.0 |
MS.gene64651.t1 | AT2G33350 | 76.000 | 50 | 12 | 0 | 9 | 58 | 295 | 344 | 3.15e-21 | 87.0 |
MS.gene64651.t1 | AT2G33350 | 76.000 | 50 | 12 | 0 | 9 | 58 | 306 | 355 | 3.16e-21 | 87.0 |
MS.gene64651.t1 | AT2G33350 | 76.000 | 50 | 12 | 0 | 9 | 58 | 307 | 356 | 3.41e-21 | 87.0 |
MS.gene64651.t1 | AT2G33350 | 77.551 | 49 | 11 | 0 | 9 | 57 | 315 | 363 | 1.15e-20 | 85.5 |
MS.gene64651.t1 | AT3G12890 | 57.746 | 71 | 30 | 0 | 8 | 78 | 134 | 204 | 8.50e-20 | 81.3 |
MS.gene64651.t1 | AT5G59990 | 57.471 | 87 | 30 | 2 | 5 | 91 | 155 | 234 | 1.56e-19 | 80.5 |
MS.gene64651.t1 | AT1G04500 | 73.469 | 49 | 13 | 0 | 9 | 57 | 275 | 323 | 4.82e-18 | 78.2 |
MS.gene64651.t1 | AT1G04500 | 73.469 | 49 | 13 | 0 | 9 | 57 | 284 | 332 | 5.01e-18 | 78.2 |
MS.gene64651.t1 | AT1G04500 | 73.469 | 49 | 13 | 0 | 9 | 57 | 284 | 332 | 5.01e-18 | 78.2 |
MS.gene64651.t1 | AT4G27900 | 50.000 | 58 | 29 | 0 | 1 | 58 | 202 | 259 | 9.19e-16 | 70.9 |
MS.gene64651.t1 | AT4G27900 | 50.000 | 58 | 29 | 0 | 1 | 58 | 202 | 259 | 9.19e-16 | 70.9 |
MS.gene64651.t1 | AT5G53420 | 47.368 | 57 | 30 | 0 | 1 | 57 | 127 | 183 | 4.08e-15 | 67.8 |
MS.gene64651.t1 | AT5G53420 | 47.368 | 57 | 30 | 0 | 1 | 57 | 127 | 183 | 4.08e-15 | 67.8 |
MS.gene64651.t1 | AT5G53420 | 47.368 | 57 | 30 | 0 | 1 | 57 | 127 | 183 | 4.08e-15 | 67.8 |
MS.gene64651.t1 | AT5G53420 | 47.368 | 57 | 30 | 0 | 1 | 57 | 206 | 262 | 1.01e-14 | 68.2 |
MS.gene64651.t1 | AT5G24930 | 44.643 | 56 | 31 | 0 | 2 | 57 | 284 | 339 | 5.30e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCTCCATCATTATTAATA+TGG | 0.215056 | 4.4:+43377286 | None:intergenic |
AGACACTATATGAGGAATTA+TGG | 0.234337 | 4.4:+43377178 | None:intergenic |
AAGATGAGGAAGAAGAGAAT+TGG | 0.325488 | 4.4:-43377257 | MS.gene64651:CDS |
TTAATATGGCTCCATTGATT+TGG | 0.330401 | 4.4:+43377300 | None:intergenic |
GAACTACAATAAGAAAATTA+AGG | 0.352434 | 4.4:-43378479 | MS.gene64651:intron |
GACTCGTCATGAGCAAGATT+TGG | 0.366759 | 4.4:+43377204 | None:intergenic |
GACACTATATGAGGAATTAT+GGG | 0.370530 | 4.4:+43377179 | None:intergenic |
AGATGAGGAAGAAGAGAATT+GGG | 0.375443 | 4.4:-43377256 | MS.gene64651:CDS |
TTCCTCTGGGCTGTAAGGAC+TGG | 0.386798 | 4.4:+43378546 | None:intergenic |
GACAGTAGGCCACGTATTAG+AGG | 0.396649 | 4.4:-43377360 | MS.gene64651:CDS |
TTGGGAATCAGTATGTTTGT+AGG | 0.430394 | 4.4:-43377395 | MS.gene64651:intron |
ATATGGCTCCATTGATTTGG+TGG | 0.458606 | 4.4:+43377303 | None:intergenic |
TGGAGCCATATTAATAATGA+TGG | 0.462252 | 4.4:-43377291 | MS.gene64651:CDS |
TAATGAATCCACCAAATCAA+TGG | 0.463510 | 4.4:-43377311 | MS.gene64651:CDS |
TTAATACAAGACACTATATG+AGG | 0.478126 | 4.4:+43377170 | None:intergenic |
GGACAGTTTATTTGATACAT+TGG | 0.482895 | 4.4:-43377235 | MS.gene64651:CDS |
TGGAGAGGAATTAGAAGATG+AGG | 0.517815 | 4.4:-43377271 | MS.gene64651:CDS |
TTACAGCCCAGAGGAAAAGA+AGG | 0.592097 | 4.4:-43378539 | MS.gene64651:CDS |
ACAGTAGGCCACGTATTAGA+GGG | 0.598648 | 4.4:-43377359 | MS.gene64651:CDS |
GTATGTTTGTAGGAAGACAT+TGG | 0.609319 | 4.4:-43377385 | MS.gene64651:CDS |
GCCCAGAGGAAAAGAAGGTG+AGG | 0.612843 | 4.4:-43378534 | MS.gene64651:CDS |
GGAAGACATTGGCAGACAGT+AGG | 0.616987 | 4.4:-43377374 | MS.gene64651:CDS |
TCATGAGCAAGATTTGGAGT+AGG | 0.623530 | 4.4:+43377210 | None:intergenic |
CCATATTAATAATGATGGAG+AGG | 0.627865 | 4.4:-43377286 | MS.gene64651:CDS |
ATAGAAGCAAGAGAAATCAG+AGG | 0.650504 | 4.4:-43378501 | MS.gene64651:CDS |
ACACTATATGAGGAATTATG+GGG | 0.665187 | 4.4:+43377180 | None:intergenic |
AGCCAGTCCTTACAGCCCAG+AGG | 0.687171 | 4.4:-43378548 | MS.gene64651:CDS |
GCAAATCTCCCTCTAATACG+TGG | 0.703686 | 4.4:+43377351 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTAATAAATAT+CGG | + | chr4.4:43377356-43377375 | None:intergenic | 0.0% |
!!! | TTTAAAACTTAAATAGTATA+TGG | - | chr4.4:43377395-43377414 | MS.gene64651:intron | 10.0% |
!!! | TTTAAGTTTTAAAACAATAT+TGG | + | chr4.4:43377388-43377407 | None:intergenic | 10.0% |
!! | AAAATGTATGTATTAAAATG+AGG | + | chr4.4:43377310-43377329 | None:intergenic | 15.0% |
!! | TTAAGAATATTATAACAACA+TGG | - | chr4.4:43377643-43377662 | MS.gene64651:intron | 15.0% |
!!! | AGTTTATTTTTGAAAAAACT+AGG | + | chr4.4:43377995-43378014 | None:intergenic | 15.0% |
!!! | GTTTATTTTTGAAAAAACTA+GGG | + | chr4.4:43377994-43378013 | None:intergenic | 15.0% |
!!! | TCAAATTGTAACTATAATTT+TGG | - | chr4.4:43378132-43378151 | MS.gene64651:intron | 15.0% |
!! | AATATAAAACCCTCATTATT+TGG | + | chr4.4:43377732-43377751 | None:intergenic | 20.0% |
!! | ATATAAAACCCTCATTATTT+GGG | + | chr4.4:43377731-43377750 | None:intergenic | 20.0% |
!! | GAACTACAATAAGAAAATTA+AGG | - | chr4.4:43377250-43377269 | MS.gene64651:CDS | 20.0% |
!! | TGAAGAATGAAAATTAGAAT+TGG | - | chr4.4:43378048-43378067 | MS.gene64651:intron | 20.0% |
!! | TTTATTGAATGACCATATTA+GGG | - | chr4.4:43377530-43377549 | MS.gene64651:intron | 20.0% |
!!! | ATCTTAGTTTTGTTTTCTTT+TGG | - | chr4.4:43378315-43378334 | MS.gene64651:intron | 20.0% |
!!! | TATTCTTTTGATTTTTTGCA+TGG | - | chr4.4:43378081-43378100 | MS.gene64651:intron | 20.0% |
!!! | TCTTAGTTTTGTTTTCTTTT+GGG | - | chr4.4:43378316-43378335 | MS.gene64651:intron | 20.0% |
!!! | TTTTAAAATTGTCTACGATT+CGG | + | chr4.4:43377503-43377522 | None:intergenic | 20.0% |
!!! | TTTTCAAAAATAAACTGAAG+TGG | - | chr4.4:43377999-43378018 | MS.gene64651:intron | 20.0% |
! | AAATGGAAACAGTAAAAAGT+TGG | - | chr4.4:43377963-43377982 | MS.gene64651:intron | 25.0% |
! | AACTTAAATAGTATATGGTC+CGG | - | chr4.4:43377400-43377419 | MS.gene64651:intron | 25.0% |
! | CTACTTTAAACAATTTAAGC+TGG | - | chr4.4:43377447-43377466 | MS.gene64651:intron | 25.0% |
! | GTTTATTGAATGACCATATT+AGG | - | chr4.4:43377529-43377548 | MS.gene64651:intron | 25.0% |
! | TATAAAACCCTCATTATTTG+GGG | + | chr4.4:43377730-43377749 | None:intergenic | 25.0% |
! | TTAATACAAGACACTATATG+AGG | + | chr4.4:43378562-43378581 | None:intergenic | 25.0% |
! | TTATTGAATGACCATATTAG+GGG | - | chr4.4:43377531-43377550 | MS.gene64651:intron | 25.0% |
!! | ACAAAATTTTCTCCATTCAT+TGG | + | chr4.4:43377884-43377903 | None:intergenic | 25.0% |
!! | ACAATTTGATATTTTCTGTG+TGG | + | chr4.4:43378121-43378140 | None:intergenic | 25.0% |
!! | CATCTAAGATTGAAAGTAAA+TGG | - | chr4.4:43377946-43377965 | MS.gene64651:intron | 25.0% |
!!! | GATTTGTTACTGTACATTAT+TGG | + | chr4.4:43378266-43378285 | None:intergenic | 25.0% |
ACACTATATGAGGAATTATG+GGG | + | chr4.4:43378552-43378571 | None:intergenic | 30.0% | |
AGACACTATATGAGGAATTA+TGG | + | chr4.4:43378554-43378573 | None:intergenic | 30.0% | |
ATTGGAAGAGATAACTTTGA+GGG | + | chr4.4:43377771-43377790 | None:intergenic | 30.0% | |
CCTCTCCATCATTATTAATA+TGG | + | chr4.4:43378446-43378465 | None:intergenic | 30.0% | |
GACACTATATGAGGAATTAT+GGG | + | chr4.4:43378553-43378572 | None:intergenic | 30.0% | |
GAGTTTGGAGATAAAAAGAA+GGG | + | chr4.4:43377838-43377857 | None:intergenic | 30.0% | |
GGACAGTTTATTTGATACAT+TGG | - | chr4.4:43378494-43378513 | MS.gene64651:CDS | 30.0% | |
GGGGAACTAAAAAATTGTAT+TGG | + | chr4.4:43377711-43377730 | None:intergenic | 30.0% | |
TAATGAATCCACCAAATCAA+TGG | - | chr4.4:43378418-43378437 | MS.gene64651:intron | 30.0% | |
TGGAGCCATATTAATAATGA+TGG | - | chr4.4:43378438-43378457 | MS.gene64651:intron | 30.0% | |
! | ATGGAGAAAATTTTGTGAAG+AGG | - | chr4.4:43377888-43377907 | MS.gene64651:intron | 30.0% |
! | CAATTTTTCCCTGTATTTCT+CGG | + | chr4.4:43377560-43377579 | None:intergenic | 30.0% |
! | CCATATTAATAATGATGGAG+AGG | - | chr4.4:43378443-43378462 | MS.gene64651:intron | 30.0% |
! | TTAATATGGCTCCATTGATT+TGG | + | chr4.4:43378432-43378451 | None:intergenic | 30.0% |
! | TTTAGTTCCCCAAATAATGA+GGG | - | chr4.4:43377720-43377739 | MS.gene64651:intron | 30.0% |
!!! | TTTTAGTTCCCCAAATAATG+AGG | - | chr4.4:43377719-43377738 | MS.gene64651:intron | 30.0% |
AAACTCGCAAACAAAACCTA+AGG | - | chr4.4:43377852-43377871 | MS.gene64651:intron | 35.0% | |
AACTCGCAAACAAAACCTAA+GGG | - | chr4.4:43377853-43377872 | MS.gene64651:intron | 35.0% | |
AAGATGAGGAAGAAGAGAAT+TGG | - | chr4.4:43378472-43378491 | MS.gene64651:intron | 35.0% | |
AGATGAGGAAGAAGAGAATT+GGG | - | chr4.4:43378473-43378492 | MS.gene64651:intron | 35.0% | |
ATAGAAGCAAGAGAAATCAG+AGG | - | chr4.4:43377228-43377247 | MS.gene64651:CDS | 35.0% | |
CATTGGAAGAGATAACTTTG+AGG | + | chr4.4:43377772-43377791 | None:intergenic | 35.0% | |
CGAGTTTGGAGATAAAAAGA+AGG | + | chr4.4:43377839-43377858 | None:intergenic | 35.0% | |
GGAAAAAATGAAGGAGTAAG+TGG | + | chr4.4:43377808-43377827 | None:intergenic | 35.0% | |
GTAGTTGAACCATAACTTAG+AGG | + | chr4.4:43377431-43377450 | None:intergenic | 35.0% | |
GTATGTTTGTAGGAAGACAT+TGG | - | chr4.4:43378344-43378363 | MS.gene64651:intron | 35.0% | |
GTGGAAGAAATAGAAGACAT+TGG | + | chr4.4:43377789-43377808 | None:intergenic | 35.0% | |
TTGGAGATAAAAAGAAGGGA+GGG | + | chr4.4:43377834-43377853 | None:intergenic | 35.0% | |
TTGGGAATCAGTATGTTTGT+AGG | - | chr4.4:43378334-43378353 | MS.gene64651:intron | 35.0% | |
TTTGGAGATAAAAAGAAGGG+AGG | + | chr4.4:43377835-43377854 | None:intergenic | 35.0% | |
!! | AATTTTGGTGTGACACTTTG+TGG | - | chr4.4:43378147-43378166 | MS.gene64651:intron | 35.0% |
!!! | TTAGGTTTTGTTTGCGAGTT+TGG | + | chr4.4:43377853-43377872 | None:intergenic | 35.0% |
CATTCATTGGAGTTTCCCTT+AGG | + | chr4.4:43377871-43377890 | None:intergenic | 40.0% | |
CTAAGGGAAACTCCAATGAA+TGG | - | chr4.4:43377869-43377888 | MS.gene64651:intron | 40.0% | |
GATAAAAAGAAGGGAGGGTT+TGG | + | chr4.4:43377829-43377848 | None:intergenic | 40.0% | |
GGAGGGTTTGGAAAAAATGA+AGG | + | chr4.4:43377817-43377836 | None:intergenic | 40.0% | |
TGGAGAGGAATTAGAAGATG+AGG | - | chr4.4:43378458-43378477 | MS.gene64651:intron | 40.0% | |
! | TCATGAGCAAGATTTGGAGT+AGG | + | chr4.4:43378522-43378541 | None:intergenic | 40.0% |
!! | ATATGGCTCCATTGATTTGG+TGG | + | chr4.4:43378429-43378448 | None:intergenic | 40.0% |
ACAGTAGGCCACGTATTAGA+GGG | - | chr4.4:43378370-43378389 | MS.gene64651:intron | 45.0% | |
GACTCGTCATGAGCAAGATT+TGG | + | chr4.4:43378528-43378547 | None:intergenic | 45.0% | |
GCAAATCTCCCTCTAATACG+TGG | + | chr4.4:43378381-43378400 | None:intergenic | 45.0% | |
TTACAGCCCAGAGGAAAAGA+AGG | - | chr4.4:43377190-43377209 | MS.gene64651:CDS | 45.0% | |
TTTCTCGGAAGCCCCTAATA+TGG | + | chr4.4:43377545-43377564 | None:intergenic | 45.0% | |
TTTGCATGGTAGAGTCTTGC+AGG | - | chr4.4:43378095-43378114 | MS.gene64651:intron | 45.0% | |
! | ATCCTCACCTTCTTTTCCTC+TGG | + | chr4.4:43377200-43377219 | None:intergenic | 45.0% |
! | TCCTCACCTTCTTTTCCTCT+GGG | + | chr4.4:43377199-43377218 | None:intergenic | 45.0% |
! | TTCTTTTCCTCTGGGCTGTA+AGG | + | chr4.4:43377191-43377210 | None:intergenic | 45.0% |
AGGGGCTTCCGAGAAATACA+GGG | - | chr4.4:43377549-43377568 | MS.gene64651:intron | 50.0% | |
CCATAACTTAGAGGTCTCGC+CGG | + | chr4.4:43377422-43377441 | None:intergenic | 50.0% | |
GACAGTAGGCCACGTATTAG+AGG | - | chr4.4:43378369-43378388 | MS.gene64651:intron | 50.0% | |
GGAAGACATTGGCAGACAGT+AGG | - | chr4.4:43378355-43378374 | MS.gene64651:intron | 50.0% | |
TAGGGGCTTCCGAGAAATAC+AGG | - | chr4.4:43377548-43377567 | MS.gene64651:intron | 50.0% | |
CCGGCGAGACCTCTAAGTTA+TGG | - | chr4.4:43377419-43377438 | MS.gene64651:intron | 55.0% | |
GCCCAGAGGAAAAGAAGGTG+AGG | - | chr4.4:43377195-43377214 | MS.gene64651:CDS | 55.0% | |
TTCCTCTGGGCTGTAAGGAC+TGG | + | chr4.4:43377186-43377205 | None:intergenic | 55.0% | |
AGCCAGTCCTTACAGCCCAG+AGG | - | chr4.4:43377181-43377200 | MS.gene64651:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 43377170 | 43378581 | 43377170 | ID=MS.gene64651 |
chr4.4 | mRNA | 43377170 | 43378581 | 43377170 | ID=MS.gene64651.t1;Parent=MS.gene64651 |
chr4.4 | exon | 43378480 | 43378581 | 43378480 | ID=MS.gene64651.t1.exon1;Parent=MS.gene64651.t1 |
chr4.4 | CDS | 43378480 | 43378581 | 43378480 | ID=cds.MS.gene64651.t1;Parent=MS.gene64651.t1 |
chr4.4 | exon | 43377170 | 43377406 | 43377170 | ID=MS.gene64651.t1.exon2;Parent=MS.gene64651.t1 |
chr4.4 | CDS | 43377170 | 43377406 | 43377170 | ID=cds.MS.gene64651.t1;Parent=MS.gene64651.t1 |
Gene Sequence |
Protein sequence |