Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64660.t1 | XP_003598029.2 | 65.6 | 244 | 60 | 3 | 1 | 221 | 1 | 243 | 5.50E-80 | 307.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64660.t1 | Q8L3W1 | 38.4 | 99 | 61 | 0 | 21 | 119 | 6 | 104 | 6.3e-16 | 85.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64660.t1 | G7IYE8 | 65.6 | 244 | 60 | 3 | 1 | 221 | 1 | 243 | 4.0e-80 | 307.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64660.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64660.t1 | MTR_3g005460 | 65.306 | 245 | 61 | 3 | 1 | 222 | 1 | 244 | 2.95e-102 | 306 |
MS.gene64660.t1 | MTR_3g005460 | 46.667 | 255 | 87 | 3 | 16 | 221 | 257 | 511 | 4.88e-69 | 220 |
MS.gene64660.t1 | MTR_3g005420 | 65.289 | 242 | 64 | 2 | 1 | 222 | 1 | 242 | 1.38e-99 | 298 |
MS.gene64660.t1 | MTR_3g005420 | 46.698 | 212 | 107 | 1 | 16 | 221 | 265 | 476 | 1.54e-52 | 176 |
MS.gene64660.t1 | MTR_3g005420 | 65.289 | 242 | 64 | 2 | 1 | 222 | 20 | 261 | 8.12e-99 | 297 |
MS.gene64660.t1 | MTR_3g005420 | 48.988 | 247 | 85 | 1 | 16 | 221 | 284 | 530 | 8.85e-72 | 228 |
MS.gene64660.t1 | MTR_3g005490 | 55.731 | 253 | 80 | 2 | 1 | 221 | 1 | 253 | 1.37e-91 | 270 |
MS.gene64660.t1 | MTR_5g070440 | 53.435 | 262 | 81 | 1 | 1 | 221 | 1 | 262 | 1.94e-90 | 267 |
MS.gene64660.t1 | MTR_3g005495 | 68.844 | 199 | 49 | 2 | 36 | 222 | 28 | 225 | 6.03e-88 | 267 |
MS.gene64660.t1 | MTR_3g005495 | 47.660 | 235 | 92 | 4 | 16 | 222 | 238 | 469 | 1.51e-64 | 207 |
MS.gene64660.t1 | MTR_3g005480 | 53.150 | 254 | 86 | 2 | 1 | 221 | 1 | 254 | 4.83e-86 | 256 |
MS.gene64660.t1 | MTR_3g005440 | 54.854 | 206 | 47 | 2 | 35 | 221 | 34 | 212 | 3.84e-63 | 202 |
MS.gene64660.t1 | MTR_3g005440 | 49.246 | 199 | 67 | 2 | 16 | 180 | 237 | 435 | 8.07e-57 | 186 |
MS.gene64660.t1 | MTR_1g015350 | 37.736 | 212 | 89 | 4 | 1 | 209 | 1 | 172 | 4.11e-28 | 105 |
MS.gene64660.t1 | MTR_1g034240 | 41.414 | 99 | 58 | 0 | 21 | 119 | 7 | 105 | 2.48e-24 | 100 |
MS.gene64660.t1 | MTR_4g068320 | 35.294 | 119 | 70 | 1 | 9 | 127 | 1 | 112 | 1.01e-20 | 89.7 |
MS.gene64660.t1 | MTR_7g050560 | 31.579 | 133 | 87 | 1 | 9 | 137 | 1 | 133 | 2.53e-20 | 87.4 |
MS.gene64660.t1 | MTR_3g061310 | 43.434 | 99 | 54 | 1 | 21 | 119 | 12 | 108 | 7.02e-20 | 85.9 |
MS.gene64660.t1 | MTR_1g034210 | 37.037 | 108 | 67 | 1 | 21 | 128 | 7 | 113 | 2.62e-19 | 84.7 |
MS.gene64660.t1 | MTR_1g034210 | 37.037 | 108 | 67 | 1 | 21 | 128 | 7 | 113 | 3.74e-19 | 85.1 |
MS.gene64660.t1 | MTR_3g061320 | 43.000 | 100 | 55 | 1 | 20 | 119 | 11 | 108 | 6.42e-19 | 83.2 |
MS.gene64660.t1 | MTR_3g061350 | 37.097 | 124 | 75 | 2 | 21 | 144 | 12 | 132 | 2.26e-18 | 81.6 |
MS.gene64660.t1 | MTR_7g050580 | 30.000 | 140 | 95 | 2 | 9 | 147 | 1 | 138 | 2.88e-18 | 82.0 |
MS.gene64660.t1 | MTR_3g061290 | 41.000 | 100 | 57 | 1 | 20 | 119 | 11 | 108 | 3.97e-18 | 79.7 |
MS.gene64660.t1 | MTR_3g061370 | 40.777 | 103 | 59 | 1 | 17 | 119 | 5 | 105 | 4.42e-18 | 80.9 |
MS.gene64660.t1 | MTR_7g050710 | 31.343 | 134 | 84 | 1 | 9 | 134 | 1 | 134 | 9.68e-18 | 80.5 |
MS.gene64660.t1 | MTR_3g061330 | 41.414 | 99 | 56 | 1 | 21 | 119 | 12 | 108 | 1.36e-17 | 79.0 |
MS.gene64660.t1 | MTR_5g044670 | 34.314 | 102 | 67 | 0 | 18 | 119 | 13 | 114 | 3.00e-17 | 79.3 |
MS.gene64660.t1 | MTR_3g098790 | 32.407 | 108 | 73 | 0 | 14 | 121 | 6 | 113 | 5.51e-17 | 78.6 |
MS.gene64660.t1 | MTR_7g050720 | 31.683 | 101 | 69 | 0 | 20 | 120 | 9 | 109 | 1.49e-15 | 74.3 |
MS.gene64660.t1 | MTR_3g061340 | 43.000 | 100 | 54 | 2 | 21 | 119 | 12 | 109 | 1.93e-15 | 73.6 |
MS.gene64660.t1 | MTR_7g050590 | 32.990 | 97 | 63 | 1 | 37 | 131 | 2 | 98 | 4.19e-14 | 70.1 |
MS.gene64660.t1 | MTR_3g061220 | 38.384 | 99 | 46 | 2 | 21 | 119 | 12 | 95 | 4.40e-14 | 66.6 |
MS.gene64660.t1 | MTR_8g103940 | 29.293 | 99 | 70 | 0 | 21 | 119 | 39 | 137 | 2.92e-12 | 65.5 |
MS.gene64660.t1 | MTR_1g033740 | 27.660 | 141 | 97 | 3 | 20 | 160 | 21 | 156 | 7.51e-12 | 62.4 |
MS.gene64660.t1 | MTR_1g035460 | 34.579 | 107 | 64 | 2 | 37 | 143 | 2 | 102 | 9.76e-12 | 63.9 |
MS.gene64660.t1 | MTR_7g050640 | 26.852 | 108 | 79 | 0 | 14 | 121 | 6 | 113 | 1.31e-11 | 60.1 |
MS.gene64660.t1 | MTR_1g108780 | 28.704 | 108 | 72 | 1 | 36 | 138 | 12 | 119 | 2.38e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64660.t1 | AT1G49475 | 37.600 | 125 | 75 | 2 | 5 | 129 | 20 | 141 | 1.61e-20 | 85.5 |
MS.gene64660.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 21 | 119 | 6 | 104 | 2.32e-20 | 88.2 |
MS.gene64660.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 21 | 119 | 6 | 104 | 4.84e-20 | 87.4 |
MS.gene64660.t1 | AT4G01580 | 36.111 | 108 | 69 | 0 | 14 | 121 | 23 | 130 | 3.15e-19 | 82.4 |
MS.gene64660.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 14 | 121 | 23 | 130 | 1.21e-18 | 80.9 |
MS.gene64660.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 14 | 121 | 23 | 130 | 2.40e-18 | 80.5 |
MS.gene64660.t1 | AT3G18960 | 34.091 | 88 | 58 | 0 | 34 | 121 | 6 | 93 | 4.15e-13 | 65.5 |
Find 55 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGCTTTCCTTGAGAATTT+TGG | 0.150373 | 5.2:-67814970 | None:intergenic |
GATGAGTTTATAACAAGATT+TGG | 0.242784 | 5.2:+67814493 | MS.gene64660:CDS |
AGTGAAGCATACTATTTCTT+TGG | 0.281017 | 5.2:-67813706 | None:intergenic |
ATTTCTTATCCATTCAAAAC+TGG | 0.281992 | 5.2:+67814727 | MS.gene64660:CDS |
ATGAGTTTATAACAAGATTT+GGG | 0.360502 | 5.2:+67814494 | MS.gene64660:CDS |
TTCAAAACTGGGAAGACTAA+TGG | 0.374313 | 5.2:+67814739 | MS.gene64660:CDS |
TGGAGCTTGAACAGAACATT+TGG | 0.381563 | 5.2:-67814950 | None:intergenic |
TACTATTTCTTTGGTATGCA+TGG | 0.398817 | 5.2:-67813697 | None:intergenic |
AATCTTGTTATAAACTCATC+TGG | 0.413404 | 5.2:-67814490 | None:intergenic |
AAAGCAATGCGAATAACGTT+TGG | 0.418391 | 5.2:+67815028 | MS.gene64660:CDS |
GAACACTACTCTATCTGTTA+TGG | 0.428310 | 5.2:+67814631 | MS.gene64660:CDS |
TATGTAGATTTCAAGTATGA+AGG | 0.431237 | 5.2:+67814658 | MS.gene64660:CDS |
ATTTCTTTGGTATGCATGGG+AGG | 0.447169 | 5.2:-67813693 | None:intergenic |
TCCTTCTCCGGCGCCGGTGA+CGG | 0.453830 | 5.2:-67813639 | None:intergenic |
TGACGGTTGCGAATGGCATA+TGG | 0.456852 | 5.2:+67814552 | MS.gene64660:CDS |
TCCGTCACCGGCGCCGGAGA+AGG | 0.467872 | 5.2:+67813638 | MS.gene64660:CDS |
TTCTTTGGTATGCATGGGAG+GGG | 0.472658 | 5.2:-67813691 | None:intergenic |
TTGGAATCCTTCTCCGGCGC+CGG | 0.476077 | 5.2:-67813645 | None:intergenic |
GAGAAGATTTGTTCCGTCAC+CGG | 0.477470 | 5.2:+67813626 | MS.gene64660:CDS |
AAATGTTTGGAATCCTTCTC+CGG | 0.487728 | 5.2:-67813651 | None:intergenic |
ACTATTTCTTTGGTATGCAT+GGG | 0.496981 | 5.2:-67813696 | None:intergenic |
ATATCGACAGTCAAAGGATT+GGG | 0.499850 | 5.2:-67814794 | None:intergenic |
TATTCTGCGGCGAATTCAGC+AGG | 0.501814 | 5.2:-67814920 | None:intergenic |
ATTTGTTCCGTCACCGGCGC+CGG | 0.504505 | 5.2:+67813632 | MS.gene64660:CDS |
TTGGATTCTTTAGATTTGCA+AGG | 0.513403 | 5.2:+67815047 | MS.gene64660:CDS |
CATATCGACAGTCAAAGGAT+TGG | 0.519552 | 5.2:-67814795 | None:intergenic |
ATTGTGTATTGAACAAAGGC+GGG | 0.520442 | 5.2:+67815002 | MS.gene64660:CDS |
AAGGATTGGGAACGAAAAGA+AGG | 0.522583 | 5.2:-67814781 | None:intergenic |
ATAGAGTAGTGTTCTGCAAA+CGG | 0.529825 | 5.2:-67814622 | None:intergenic |
ACAAAACAATGCAGCCTCGC+CGG | 0.533798 | 5.2:+67813604 | None:intergenic |
CACCGCATATCGACAGTCAA+AGG | 0.544452 | 5.2:-67814800 | None:intergenic |
AGGGAAAACAATCTATCAGA+TGG | 0.548736 | 5.2:+67815067 | MS.gene64660:CDS |
ATGTAGATTTCAAGTATGAA+GGG | 0.551054 | 5.2:+67814659 | MS.gene64660:CDS |
TTCAAGCTCCAAAATTCTCA+AGG | 0.552648 | 5.2:+67814962 | MS.gene64660:CDS |
TTTCTTTGGTATGCATGGGA+GGG | 0.553788 | 5.2:-67813692 | None:intergenic |
GTGACGGAACAAATCTTCTC+CGG | 0.557768 | 5.2:-67813623 | None:intergenic |
TTTCTTATCCATTCAAAACT+GGG | 0.560037 | 5.2:+67814728 | MS.gene64660:CDS |
TCTTTGGTATGCATGGGAGG+GGG | 0.563298 | 5.2:-67813690 | None:intergenic |
TGGATTCTTTAGATTTGCAA+GGG | 0.565236 | 5.2:+67815048 | MS.gene64660:CDS |
GTTTATTGTGTATTGAACAA+AGG | 0.570068 | 5.2:+67814998 | MS.gene64660:CDS |
CTGTTACTGACGGTTGCGAA+TGG | 0.573643 | 5.2:+67814545 | MS.gene64660:CDS |
TATTGTGTATTGAACAAAGG+CGG | 0.588560 | 5.2:+67815001 | MS.gene64660:CDS |
AAAATTCTCAAGGAAAGCAG+TGG | 0.599450 | 5.2:+67814972 | MS.gene64660:CDS |
GCCACGATTACTGTTACTGA+CGG | 0.599776 | 5.2:+67814535 | MS.gene64660:CDS |
AGGATTGGGAACGAAAAGAA+GGG | 0.605751 | 5.2:-67814780 | None:intergenic |
TGTGTATTGAACAAAGGCGG+GGG | 0.614183 | 5.2:+67815004 | MS.gene64660:CDS |
ATTTGGCTTCAAATATTCTG+CGG | 0.631419 | 5.2:-67814933 | None:intergenic |
ATCCTTTGACTGTCGATATG+CGG | 0.632326 | 5.2:+67814798 | MS.gene64660:CDS |
AAATTCTCAAGGAAAGCAGT+GGG | 0.637805 | 5.2:+67814973 | MS.gene64660:CDS |
ACCGTCAGTAACAGTAATCG+TGG | 0.641873 | 5.2:-67814536 | None:intergenic |
TTGTGTATTGAACAAAGGCG+GGG | 0.654751 | 5.2:+67815003 | MS.gene64660:CDS |
ACGAGTTTGAGCTTATCAAG+AGG | 0.654788 | 5.2:+67815098 | MS.gene64660:CDS |
CATATGGAAGTGAAGAAATG+TGG | 0.688821 | 5.2:+67814568 | MS.gene64660:CDS |
GGAACAAATCTTCTCCGGCG+AGG | 0.698114 | 5.2:-67813618 | None:intergenic |
GTAACTTAGAACAGAACACG+CGG | 0.742535 | 5.2:-67815124 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGAGTTTATAACAAGATTT+GGG | + | chr5.2:67814494-67814513 | MS.gene64660:CDS | 20.0% |
!!! | AAGTTTTCTTTTGCAAAAAT+TGG | + | chr5.2:67814596-67814615 | MS.gene64660:CDS | 20.0% |
!!! | AATGGTTTTCATAAAATGTT+TGG | - | chr5.2:67813667-67813686 | None:intergenic | 20.0% |
!!! | AGTAATTTTTTTTACAACCT+TGG | - | chr5.2:67814252-67814271 | None:intergenic | 20.0% |
!!! | GTTTGAGTTATATATTTATG+CGG | + | chr5.2:67814859-67814878 | MS.gene64660:intron | 20.0% |
! | ATTTCTTATCCATTCAAAAC+TGG | + | chr5.2:67814727-67814746 | MS.gene64660:CDS | 25.0% |
! | GAGAGTAATTACTTAAATTG+TGG | + | chr5.2:67814414-67814433 | MS.gene64660:intron | 25.0% |
! | GATGAGTTTATAACAAGATT+TGG | + | chr5.2:67814493-67814512 | MS.gene64660:CDS | 25.0% |
! | GTTTATTGTGTATTGAACAA+AGG | + | chr5.2:67814998-67815017 | MS.gene64660:CDS | 25.0% |
! | TTTCTTATCCATTCAAAACT+GGG | + | chr5.2:67814728-67814747 | MS.gene64660:CDS | 25.0% |
!! | AATCTTGTTATAAACTCATC+TGG | - | chr5.2:67814493-67814512 | None:intergenic | 25.0% |
!! | ATGTAGATTTCAAGTATGAA+GGG | + | chr5.2:67814659-67814678 | MS.gene64660:CDS | 25.0% |
!! | GGATTTTACTGTACATTATT+TGG | + | chr5.2:67814824-67814843 | MS.gene64660:intron | 25.0% |
!! | TACTGATTGTACAATTTGTT+TGG | + | chr5.2:67813924-67813943 | MS.gene64660:intron | 25.0% |
!! | TAGTTGACTTTATATGTATG+AGG | - | chr5.2:67813961-67813980 | None:intergenic | 25.0% |
!! | TATGTAGATTTCAAGTATGA+AGG | + | chr5.2:67814658-67814677 | MS.gene64660:CDS | 25.0% |
AATGTAGCGAAATTATGACA+TGG | - | chr5.2:67814058-67814077 | None:intergenic | 30.0% | |
TATTGTGTATTGAACAAAGG+CGG | + | chr5.2:67815001-67815020 | MS.gene64660:CDS | 30.0% | |
TCTAATGCATGCACAATTTA+TGG | - | chr5.2:67813758-67813777 | None:intergenic | 30.0% | |
TGGATTCTTTAGATTTGCAA+GGG | + | chr5.2:67815048-67815067 | MS.gene64660:CDS | 30.0% | |
TTGGATTCTTTAGATTTGCA+AGG | + | chr5.2:67815047-67815066 | MS.gene64660:CDS | 30.0% | |
! | ACTATTTCTTTGGTATGCAT+GGG | - | chr5.2:67813699-67813718 | None:intergenic | 30.0% |
! | AGTGAAGCATACTATTTCTT+TGG | - | chr5.2:67813709-67813728 | None:intergenic | 30.0% |
! | ATTTGGCTTCAAATATTCTG+CGG | - | chr5.2:67814936-67814955 | None:intergenic | 30.0% |
! | TACTATTTCTTTGGTATGCA+TGG | - | chr5.2:67813700-67813719 | None:intergenic | 30.0% |
!! | TCAAGTCTTAGTTTCAAGTT+AGG | + | chr5.2:67814312-67814331 | MS.gene64660:intron | 30.0% |
!! | TGAGAATGACTTAAGTTGAA+TGG | + | chr5.2:67814277-67814296 | MS.gene64660:intron | 30.0% |
!!! | AACGAAAAGAAGGGTTTTTT+GGG | - | chr5.2:67814774-67814793 | None:intergenic | 30.0% |
AAAATTCTCAAGGAAAGCAG+TGG | + | chr5.2:67814972-67814991 | MS.gene64660:CDS | 35.0% | |
AAAGCAATGCGAATAACGTT+TGG | + | chr5.2:67815028-67815047 | MS.gene64660:CDS | 35.0% | |
AAATTCTCAAGGAAAGCAGT+GGG | + | chr5.2:67814973-67814992 | MS.gene64660:CDS | 35.0% | |
AGGGAAAACAATCTATCAGA+TGG | + | chr5.2:67815067-67815086 | MS.gene64660:CDS | 35.0% | |
ATAGAGTAGTGTTCTGCAAA+CGG | - | chr5.2:67814625-67814644 | None:intergenic | 35.0% | |
ATATCGACAGTCAAAGGATT+GGG | - | chr5.2:67814797-67814816 | None:intergenic | 35.0% | |
ATTGTGTATTGAACAAAGGC+GGG | + | chr5.2:67815002-67815021 | MS.gene64660:CDS | 35.0% | |
CATATGGAAGTGAAGAAATG+TGG | + | chr5.2:67814568-67814587 | MS.gene64660:CDS | 35.0% | |
GAACACTACTCTATCTGTTA+TGG | + | chr5.2:67814631-67814650 | MS.gene64660:CDS | 35.0% | |
GGAGGAACAATCTAATTAAG+TGG | - | chr5.2:67814885-67814904 | None:intergenic | 35.0% | |
TTAGTGTGTCTTTCATTCCA+AGG | + | chr5.2:67814232-67814251 | MS.gene64660:intron | 35.0% | |
TTCAAAACTGGGAAGACTAA+TGG | + | chr5.2:67814739-67814758 | MS.gene64660:CDS | 35.0% | |
TTCAAGCTCCAAAATTCTCA+AGG | + | chr5.2:67814962-67814981 | MS.gene64660:CDS | 35.0% | |
TTTGCATGTTTGGACATTCA+AGG | + | chr5.2:67814193-67814212 | MS.gene64660:intron | 35.0% | |
! | AAATGTTTGGAATCCTTCTC+CGG | - | chr5.2:67813654-67813673 | None:intergenic | 35.0% |
! | ACTGCTTTCCTTGAGAATTT+TGG | - | chr5.2:67814973-67814992 | None:intergenic | 35.0% |
! | TGTGACTCTTTTTGCATGTT+TGG | + | chr5.2:67814183-67814202 | MS.gene64660:intron | 35.0% |
!! | ATCACCATTCCTCTAAAGTT+TGG | + | chr5.2:67814452-67814471 | MS.gene64660:intron | 35.0% |
!! | CACAAAAAGAGATTTTCGAG+CGG | - | chr5.2:67814134-67814153 | None:intergenic | 35.0% |
!!! | AAAGAAGGGTTTTTTGGGTT+TGG | - | chr5.2:67814769-67814788 | None:intergenic | 35.0% |
!!! | GAACGAAAAGAAGGGTTTTT+TGG | - | chr5.2:67814775-67814794 | None:intergenic | 35.0% |
!!! | TTAGTCTTCCCAGTTTTGAA+TGG | - | chr5.2:67814739-67814758 | None:intergenic | 35.0% |
AAGGATTGGGAACGAAAAGA+AGG | - | chr5.2:67814784-67814803 | None:intergenic | 40.0% | |
ACGAGTTTGAGCTTATCAAG+AGG | + | chr5.2:67815098-67815117 | MS.gene64660:CDS | 40.0% | |
AGCAGGAACATACTACACAA+TGG | - | chr5.2:67814906-67814925 | None:intergenic | 40.0% | |
AGGAACATACTACACAATGG+AGG | - | chr5.2:67814903-67814922 | None:intergenic | 40.0% | |
AGGATTGGGAACGAAAAGAA+GGG | - | chr5.2:67814783-67814802 | None:intergenic | 40.0% | |
ATCCTTTGACTGTCGATATG+CGG | + | chr5.2:67814798-67814817 | MS.gene64660:CDS | 40.0% | |
ATTTCTTTGGTATGCATGGG+AGG | - | chr5.2:67813696-67813715 | None:intergenic | 40.0% | |
CATATCGACAGTCAAAGGAT+TGG | - | chr5.2:67814798-67814817 | None:intergenic | 40.0% | |
GGTAACTGAAAACGAAAGTG+AGG | - | chr5.2:67813737-67813756 | None:intergenic | 40.0% | |
TGGAGCTTGAACAGAACATT+TGG | - | chr5.2:67814953-67814972 | None:intergenic | 40.0% | |
TTGTGTATTGAACAAAGGCG+GGG | + | chr5.2:67815003-67815022 | MS.gene64660:CDS | 40.0% | |
TTTCTTTGGTATGCATGGGA+GGG | - | chr5.2:67813695-67813714 | None:intergenic | 40.0% | |
! | GTGACCAAACTTTAGAGGAA+TGG | - | chr5.2:67814459-67814478 | None:intergenic | 40.0% |
ACCGTCAGTAACAGTAATCG+TGG | - | chr5.2:67814539-67814558 | None:intergenic | 45.0% | |
CTGCAGTGACCAAACTTTAG+AGG | - | chr5.2:67814464-67814483 | None:intergenic | 45.0% | |
GCCACGATTACTGTTACTGA+CGG | + | chr5.2:67814535-67814554 | MS.gene64660:CDS | 45.0% | |
GCTAAGTGCGTGTTTGGATT+CGG | - | chr5.2:67814381-67814400 | None:intergenic | 45.0% | |
TGTGTATTGAACAAAGGCGG+GGG | + | chr5.2:67815004-67815023 | MS.gene64660:CDS | 45.0% | |
TTCTTTGGTATGCATGGGAG+GGG | - | chr5.2:67813694-67813713 | None:intergenic | 45.0% | |
! | GAGAAGATTTGTTCCGTCAC+CGG | + | chr5.2:67813626-67813645 | MS.gene64660:CDS | 45.0% |
! | GTGACGGAACAAATCTTCTC+CGG | - | chr5.2:67813626-67813645 | None:intergenic | 45.0% |
CACCGCATATCGACAGTCAA+AGG | - | chr5.2:67814803-67814822 | None:intergenic | 50.0% | |
CTGTTACTGACGGTTGCGAA+TGG | + | chr5.2:67814545-67814564 | MS.gene64660:CDS | 50.0% | |
GCTTCAGCTAAGTGCGTGTT+TGG | - | chr5.2:67814387-67814406 | None:intergenic | 50.0% | |
TATTCTGCGGCGAATTCAGC+AGG | - | chr5.2:67814923-67814942 | None:intergenic | 50.0% | |
TCTTTGGTATGCATGGGAGG+GGG | - | chr5.2:67813693-67813712 | None:intergenic | 50.0% | |
TGACGGTTGCGAATGGCATA+TGG | + | chr5.2:67814552-67814571 | MS.gene64660:CDS | 50.0% | |
TTGACTGTCGATATGCGGTG+AGG | + | chr5.2:67814803-67814822 | MS.gene64660:intron | 50.0% | |
ATGCATGGGAGGGGGAAGAA+TGG | - | chr5.2:67813685-67813704 | None:intergenic | 55.0% | |
GGAACAAATCTTCTCCGGCG+AGG | - | chr5.2:67813621-67813640 | None:intergenic | 55.0% | |
ATTTGTTCCGTCACCGGCGC+CGG | + | chr5.2:67813632-67813651 | MS.gene64660:CDS | 60.0% | |
TTGGAATCCTTCTCCGGCGC+CGG | - | chr5.2:67813648-67813667 | None:intergenic | 60.0% | |
!! | TCCTTCTCCGGCGCCGGTGA+CGG | - | chr5.2:67813642-67813661 | None:intergenic | 70.0% |
! | TCCGTCACCGGCGCCGGAGA+AGG | + | chr5.2:67813638-67813657 | MS.gene64660:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 67813612 | 67815141 | 67813612 | ID=MS.gene64660 |
chr5.2 | mRNA | 67813612 | 67815141 | 67813612 | ID=MS.gene64660.t1;Parent=MS.gene64660 |
chr5.2 | exon | 67813612 | 67813716 | 67813612 | ID=MS.gene64660.t1.exon1;Parent=MS.gene64660.t1 |
chr5.2 | CDS | 67813612 | 67813716 | 67813612 | ID=cds.MS.gene64660.t1;Parent=MS.gene64660.t1 |
chr5.2 | exon | 67814484 | 67814819 | 67814484 | ID=MS.gene64660.t1.exon2;Parent=MS.gene64660.t1 |
chr5.2 | CDS | 67814484 | 67814819 | 67814484 | ID=cds.MS.gene64660.t1;Parent=MS.gene64660.t1 |
chr5.2 | exon | 67814914 | 67815141 | 67814914 | ID=MS.gene64660.t1.exon3;Parent=MS.gene64660.t1 |
chr5.2 | CDS | 67814914 | 67815141 | 67814914 | ID=cds.MS.gene64660.t1;Parent=MS.gene64660.t1 |
Gene Sequence |
Protein sequence |