Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64712.t1 | XP_003612086.1 | 77.6 | 331 | 54 | 5 | 1 | 319 | 1 | 323 | 1.00E-111 | 413.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64712.t1 | Q9XGX0 | 45.3 | 274 | 103 | 9 | 69 | 319 | 82 | 331 | 9.9e-47 | 188.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64712.t1 | G7KGA2 | 77.6 | 331 | 54 | 5 | 1 | 319 | 1 | 323 | 7.4e-112 | 413.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene64712.t1 | TF | SRS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64712.t1 | MTR_5g021130 | 87.349 | 332 | 20 | 8 | 1 | 319 | 1 | 323 | 0.0 | 520 |
MS.gene64712.t1 | MTR_8g076620 | 53.757 | 346 | 118 | 12 | 1 | 319 | 1 | 331 | 1.71e-94 | 283 |
MS.gene64712.t1 | MTR_3g112510 | 42.138 | 318 | 150 | 11 | 1 | 314 | 1 | 288 | 2.95e-61 | 197 |
MS.gene64712.t1 | MTR_5g089750 | 50.314 | 159 | 55 | 4 | 106 | 246 | 249 | 401 | 3.38e-39 | 144 |
MS.gene64712.t1 | MTR_4g071110 | 44.156 | 154 | 66 | 1 | 95 | 248 | 6 | 139 | 1.65e-38 | 137 |
MS.gene64712.t1 | MTR_3g014660 | 43.750 | 160 | 74 | 3 | 106 | 251 | 134 | 291 | 4.04e-38 | 138 |
MS.gene64712.t1 | MTR_8g039110 | 42.857 | 168 | 76 | 3 | 106 | 254 | 124 | 290 | 4.49e-34 | 127 |
MS.gene64712.t1 | MTR_1g023230 | 55.556 | 117 | 33 | 4 | 104 | 208 | 120 | 229 | 9.89e-28 | 108 |
MS.gene64712.t1 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 106 | 150 | 124 | 168 | 7.38e-21 | 90.1 |
MS.gene64712.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 108 | 140 | 44 | 76 | 1.18e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64712.t1 | AT3G51060 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.80e-76 | 239 |
MS.gene64712.t1 | AT5G66350 | 48.045 | 358 | 120 | 16 | 1 | 319 | 1 | 331 | 3.21e-75 | 234 |
MS.gene64712.t1 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 8.91e-73 | 228 |
MS.gene64712.t1 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 1.43e-72 | 228 |
MS.gene64712.t1 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
MS.gene64712.t1 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
MS.gene64712.t1 | AT1G75520 | 51.667 | 240 | 80 | 9 | 102 | 319 | 121 | 346 | 4.95e-65 | 208 |
MS.gene64712.t1 | AT4G36260 | 38.757 | 338 | 167 | 14 | 1 | 317 | 1 | 319 | 1.64e-48 | 165 |
MS.gene64712.t1 | AT2G18120 | 41.961 | 255 | 87 | 10 | 1 | 248 | 6 | 206 | 3.08e-46 | 156 |
MS.gene64712.t1 | AT2G18120 | 41.339 | 254 | 88 | 10 | 1 | 248 | 6 | 204 | 2.34e-44 | 151 |
MS.gene64712.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 6 | 138 | 3.74e-44 | 150 |
MS.gene64712.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 7 | 139 | 4.02e-44 | 149 |
MS.gene64712.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 6 | 123 | 2.73e-43 | 147 |
MS.gene64712.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 7 | 124 | 2.84e-43 | 147 |
MS.gene64712.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.66e-37 | 135 |
MS.gene64712.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.66e-37 | 135 |
MS.gene64712.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 199 | 356 | 1.10e-36 | 136 |
MS.gene64712.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 15 | 101 | 7.21e-29 | 107 |
MS.gene64712.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 50 | 136 | 2.29e-28 | 108 |
MS.gene64712.t1 | AT3G54430 | 39.597 | 149 | 77 | 4 | 102 | 249 | 37 | 173 | 2.50e-27 | 105 |
MS.gene64712.t1 | AT5G12330 | 86.957 | 46 | 6 | 0 | 106 | 151 | 112 | 157 | 6.63e-23 | 95.1 |
Find 77 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5.2:-12319893 | None:intergenic |
CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5.2:-12318956 | None:intergenic |
TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5.2:+12318692 | MS.gene64712:CDS |
ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5.2:+12318540 | MS.gene64712:CDS |
ACTAGAATTAGAGGCGTTTC+CGG | 0.373528 | 5.2:-12319842 | None:intergenic |
TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5.2:+12319914 | MS.gene64712:CDS |
TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5.2:+12319816 | MS.gene64712:CDS |
AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5.2:-12319028 | None:intergenic |
TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5.2:-12318545 | None:intergenic |
TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5.2:-12318526 | None:intergenic |
TAACTATTATTCCCATGATC+TGG | 0.405584 | 5.2:-12319808 | None:intergenic |
TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5.2:+12319680 | MS.gene64712:CDS |
TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5.2:+12319796 | MS.gene64712:CDS |
TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5.2:-12320018 | None:intergenic |
CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5.2:-12318911 | None:intergenic |
GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5.2:+12319913 | MS.gene64712:CDS |
AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5.2:+12318885 | MS.gene64712:CDS |
ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5.2:-12319892 | None:intergenic |
GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5.2:+12318767 | MS.gene64712:CDS |
TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5.2:-12319916 | None:intergenic |
TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5.2:+12318708 | MS.gene64712:CDS |
GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5.2:-12319851 | None:intergenic |
GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5.2:-12319670 | None:intergenic |
GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5.2:+12318791 | MS.gene64712:CDS |
TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5.2:+12318470 | None:intergenic |
CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5.2:+12318680 | MS.gene64712:CDS |
AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5.2:-12319988 | None:intergenic |
TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5.2:+12319859 | MS.gene64712:CDS |
GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5.2:-12320017 | None:intergenic |
GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5.2:+12318761 | MS.gene64712:CDS |
CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5.2:+12319915 | MS.gene64712:CDS |
CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5.2:-12319688 | None:intergenic |
TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5.2:+12318755 | MS.gene64712:CDS |
GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5.2:+12318709 | MS.gene64712:CDS |
AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5.2:-12319873 | None:intergenic |
CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5.2:-12319900 | None:intergenic |
TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5.2:-12318722 | None:intergenic |
TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5.2:+12319040 | MS.gene64712:CDS |
GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5.2:+12318792 | MS.gene64712:CDS |
GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5.2:+12318748 | MS.gene64712:CDS |
CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5.2:+12318697 | MS.gene64712:CDS |
TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5.2:-12319005 | None:intergenic |
TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5.2:+12318698 | MS.gene64712:CDS |
CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5.2:+12319860 | MS.gene64712:CDS |
ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5.2:-12319964 | None:intergenic |
AGTGTTGTTGATGTTGATGT+TGG | 0.543270 | 5.2:-12318622 | None:intergenic |
AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5.2:+12318851 | MS.gene64712:CDS |
AATAGTTACAATATGGCTAC+CGG | 0.553111 | 5.2:+12319823 | MS.gene64712:CDS |
GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5.2:-12319949 | None:intergenic |
AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5.2:+12318749 | MS.gene64712:CDS |
TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5.2:+12319751 | MS.gene64712:CDS |
CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5.2:-12318836 | None:intergenic |
GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5.2:-12319970 | None:intergenic |
ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5.2:+12319797 | MS.gene64712:CDS |
GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5.2:+12318584 | MS.gene64712:CDS |
ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5.2:-12320012 | None:intergenic |
AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5.2:+12319976 | MS.gene64712:CDS |
TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5.2:+12319864 | MS.gene64712:CDS |
ATATATAATATACCTGCTGA+AGG | 0.587423 | 5.2:-12319052 | None:intergenic |
TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5.2:-12320014 | None:intergenic |
TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5.2:+12319748 | MS.gene64712:CDS |
CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5.2:-12319036 | None:intergenic |
CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5.2:+12318956 | MS.gene64712:CDS |
CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5.2:+12319752 | MS.gene64712:CDS |
GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5.2:-12320013 | None:intergenic |
CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5.2:-12319915 | None:intergenic |
CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5.2:+12319717 | MS.gene64712:CDS |
CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5.2:-12319980 | None:intergenic |
AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5.2:+12318886 | MS.gene64712:CDS |
GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5.2:+12318770 | MS.gene64712:CDS |
TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5.2:-12320011 | None:intergenic |
TATATAATATACCTGCTGAA+GGG | 0.636400 | 5.2:-12319051 | None:intergenic |
TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5.2:+12319861 | MS.gene64712:CDS |
GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5.2:-12319037 | None:intergenic |
CACTCCTAACACAACACCAG+AGG | 0.667381 | 5.2:-12318696 | None:intergenic |
GGAAACGCCTCTAATTCTAG+TGG | 0.698556 | 5.2:+12319844 | MS.gene64712:CDS |
GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5.2:-12318601 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTAATTATCATAAAAAAAA+GGG | + | chr5.2:12319626-12319645 | MS.gene64712:intron | 10.0% |
!! | TGTTAATTATCATAAAAAAA+AGG | + | chr5.2:12319625-12319644 | MS.gene64712:intron | 10.0% |
!! | TAAATATGTATATATCATCA+TGG | - | chr5.2:12319570-12319589 | None:intergenic | 15.0% |
!! | AAACAAACAAACTATAAGTT+AGG | - | chr5.2:12319593-12319612 | None:intergenic | 20.0% |
!! | TTGGATTATTATTATTCTGT+TGG | - | chr5.2:12318529-12318548 | None:intergenic | 20.0% |
! | ATAAAAAAAAGGGCTATTAG+AGG | + | chr5.2:12319636-12319655 | MS.gene64712:intron | 25.0% |
! | ATATATAATATACCTGCTGA+AGG | - | chr5.2:12319055-12319074 | None:intergenic | 25.0% |
! | GACATATATGAACAAAGAAA+AGG | - | chr5.2:12319405-12319424 | None:intergenic | 25.0% |
! | TATATAATATACCTGCTGAA+GGG | - | chr5.2:12319054-12319073 | None:intergenic | 25.0% |
! | TGGGAATAATAGTTACAATA+TGG | + | chr5.2:12319816-12319835 | MS.gene64712:CDS | 25.0% |
!! | AGAGGAATTTTGTATGATTA+TGG | + | chr5.2:12319784-12319803 | MS.gene64712:CDS | 25.0% |
AATAGATCTACTGTGTTTGT+GGG | + | chr5.2:12318749-12318768 | MS.gene64712:CDS | 30.0% | |
AATAGTTACAATATGGCTAC+CGG | + | chr5.2:12319823-12319842 | MS.gene64712:CDS | 30.0% | |
ACAGAAGAGATAAGGTTTAA+GGG | - | chr5.2:12319895-12319914 | None:intergenic | 30.0% | |
ATAATCCAACAACAGAATTC+TGG | + | chr5.2:12318540-12318559 | MS.gene64712:CDS | 30.0% | |
ATTCTCTTCCAAAACTTTCT+CGG | - | chr5.2:12319190-12319209 | None:intergenic | 30.0% | |
CATTGAATAACTCATGTATC+TGG | - | chr5.2:12319475-12319494 | None:intergenic | 30.0% | |
GTATAAGTTGTCAAGATTGT+GGG | + | chr5.2:12318792-12318811 | MS.gene64712:CDS | 30.0% | |
TAACTATTATTCCCATGATC+TGG | - | chr5.2:12319811-12319830 | None:intergenic | 30.0% | |
TATTCAACAGCTGTAAACAT+TGG | + | chr5.2:12319748-12319767 | MS.gene64712:CDS | 30.0% | |
TTATACCAGAATTCTGTTGT+TGG | - | chr5.2:12318548-12318567 | None:intergenic | 30.0% | |
! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5.2:12319162-12319181 | MS.gene64712:intron | 30.0% |
!! | AAACTCATGTTAAGAGTACT+TGG | + | chr5.2:12318885-12318904 | MS.gene64712:CDS | 30.0% |
!! | AACTCATGTTAAGAGTACTT+GGG | + | chr5.2:12318886-12318905 | MS.gene64712:CDS | 30.0% |
!! | AGAACTTGTTGTAAAAGTAG+AGG | + | chr5.2:12318851-12318870 | MS.gene64712:CDS | 30.0% |
!!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5.2:12318485-12318504 | MS.gene64712:CDS | 30.0% |
AATGAATGGGATCAATGACA+GGG | + | chr5.2:12319278-12319297 | MS.gene64712:intron | 35.0% | |
ATGATTATGGTCCAGATCAT+GGG | + | chr5.2:12319797-12319816 | MS.gene64712:CDS | 35.0% | |
CAAGTTCTACATCTCATATG+AGG | - | chr5.2:12318839-12318858 | None:intergenic | 35.0% | |
CCATGTTGTTGAGATGATTT+AGG | - | chr5.2:12318959-12318978 | None:intergenic | 35.0% | |
CCTAAATCATCTCAACAACA+TGG | + | chr5.2:12318956-12318975 | MS.gene64712:CDS | 35.0% | |
GAATAGATCTACTGTGTTTG+TGG | + | chr5.2:12318748-12318767 | MS.gene64712:CDS | 35.0% | |
GACAGAAGAGATAAGGTTTA+AGG | - | chr5.2:12319896-12319915 | None:intergenic | 35.0% | |
GGTATAAGTTGTCAAGATTG+TGG | + | chr5.2:12318791-12318810 | MS.gene64712:CDS | 35.0% | |
TATGATTATGGTCCAGATCA+TGG | + | chr5.2:12319796-12319815 | MS.gene64712:CDS | 35.0% | |
TGTTGTTCTGACGAATGAAT+GGG | + | chr5.2:12319265-12319284 | MS.gene64712:intron | 35.0% | |
! | AGTGTTGTTGATGTTGATGT+TGG | - | chr5.2:12318625-12318644 | None:intergenic | 35.0% |
!! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5.2:12319371-12319390 | None:intergenic | 35.0% |
!! | GTTGTTTCTAATTCATACCG+TGG | + | chr5.2:12318584-12318603 | MS.gene64712:CDS | 35.0% |
AAGAATTGCGTACCACTAGA+AGG | - | chr5.2:12319991-12320010 | None:intergenic | 40.0% | |
AATTCCTTCATGCCTTCTAG+TGG | + | chr5.2:12319976-12319995 | MS.gene64712:CDS | 40.0% | |
AGCTGTGAAAGTAGTGTTGT+TGG | - | chr5.2:12319378-12319397 | None:intergenic | 40.0% | |
ATGAAGGAATTAAGTGGAGC+TGG | - | chr5.2:12319967-12319986 | None:intergenic | 40.0% | |
CAACAAGATCTTTACTCCTC+TGG | + | chr5.2:12318680-12318699 | MS.gene64712:CDS | 40.0% | |
CAACAGCTGTAAACATTGGA+GGG | + | chr5.2:12319752-12319771 | MS.gene64712:CDS | 40.0% | |
GAATGAATGGGATCAATGAC+AGG | + | chr5.2:12319277-12319296 | MS.gene64712:intron | 40.0% | |
GAGTGTACCACTAGAATTAG+AGG | - | chr5.2:12319854-12319873 | None:intergenic | 40.0% | |
GGTTCCAAATCTCAAAACCA+CGG | - | chr5.2:12318604-12318623 | None:intergenic | 40.0% | |
TAAACGAGTGCAAGCTAAAG+AGG | - | chr5.2:12319008-12319027 | None:intergenic | 40.0% | |
TCAACAGCTGTAAACATTGG+AGG | + | chr5.2:12319751-12319770 | MS.gene64712:CDS | 40.0% | |
TCAGAAGAACAAACCCTAGT+AGG | - | chr5.2:12318725-12318744 | None:intergenic | 40.0% | |
! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5.2:12319973-12319992 | None:intergenic | 40.0% |
! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5.2:12319264-12319283 | MS.gene64712:intron | 40.0% |
! | TCGTCAGAACAACACTGTTT+TGG | - | chr5.2:12319259-12319278 | None:intergenic | 40.0% |
!! | ACTAGAATTAGAGGCGTTTC+CGG | - | chr5.2:12319845-12319864 | None:intergenic | 40.0% |
!!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5.2:12319766-12319785 | MS.gene64712:CDS | 40.0% |
!!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5.2:12318597-12318616 | MS.gene64712:CDS | 40.0% |
!!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5.2:12319179-12319198 | MS.gene64712:intron | 40.0% |
AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5.2:12319031-12319050 | None:intergenic | 45.0% | |
CATCAGGGACAGAAGAGATA+AGG | - | chr5.2:12319903-12319922 | None:intergenic | 45.0% | |
CTAGTGGTACACTCCTTGAA+GGG | + | chr5.2:12319860-12319879 | MS.gene64712:CDS | 45.0% | |
CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5.2:12318914-12318933 | None:intergenic | 45.0% | |
GGAAACGCCTCTAATTCTAG+TGG | + | chr5.2:12319844-12319863 | MS.gene64712:CDS | 45.0% | |
GGAGCTGGATACAAAGAAGA+AGG | - | chr5.2:12319952-12319971 | None:intergenic | 45.0% | |
TAGTGGTACACTCCTTGAAG+GGG | + | chr5.2:12319861-12319880 | MS.gene64712:CDS | 45.0% | |
TCTACTGTGTTTGTGGGAAG+TGG | + | chr5.2:12318755-12318774 | MS.gene64712:CDS | 45.0% | |
TCTAGTGGTACACTCCTTGA+AGG | + | chr5.2:12319859-12319878 | MS.gene64712:CDS | 45.0% | |
TGAATTCTCCAGCAGAGTTC+AGG | + | chr5.2:12319680-12319699 | MS.gene64712:CDS | 45.0% | |
! | GGAGATGAATTTTCCAGCTG+TGG | + | chr5.2:12319657-12319676 | MS.gene64712:CDS | 45.0% |
! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5.2:12319353-12319372 | None:intergenic | 45.0% |
!! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5.2:12319717-12319736 | MS.gene64712:CDS | 45.0% |
!! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5.2:12318692-12318711 | MS.gene64712:CDS | 45.0% |
!! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5.2:12318698-12318717 | MS.gene64712:CDS | 45.0% |
CACTCCTAACACAACACCAG+AGG | - | chr5.2:12318699-12318718 | None:intergenic | 50.0% | |
CTGAAGGGAGAGTGAGTGAA+GGG | - | chr5.2:12319039-12319058 | None:intergenic | 50.0% | |
GTGTTTGTGGGAAGTGGAAG+TGG | + | chr5.2:12318761-12318780 | MS.gene64712:CDS | 50.0% | |
GTTAGGAGTGGGACCTACTA+GGG | + | chr5.2:12318709-12318728 | MS.gene64712:CDS | 50.0% | |
TCCCTGATGCTACTGCTGTT+GGG | + | chr5.2:12319914-12319933 | MS.gene64712:CDS | 50.0% | |
TGTTAGGAGTGGGACCTACT+AGG | + | chr5.2:12318708-12318727 | MS.gene64712:CDS | 50.0% | |
! | CGTACCACTAGAAGGCATGA+AGG | - | chr5.2:12319983-12320002 | None:intergenic | 50.0% |
!! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5.2:12318697-12318716 | MS.gene64712:CDS | 50.0% |
CCCCAACAGCAGTAGCATCA+GGG | - | chr5.2:12319918-12319937 | None:intergenic | 55.0% | |
CCCTGATGCTACTGCTGTTG+GGG | + | chr5.2:12319915-12319934 | MS.gene64712:CDS | 55.0% | |
GCTGAAGGGAGAGTGAGTGA+AGG | - | chr5.2:12319040-12319059 | None:intergenic | 55.0% | |
GCTGGAGAATTCACCACAGC+TGG | - | chr5.2:12319673-12319692 | None:intergenic | 55.0% | |
GGAAGTGGAAGTGGAAGTGG+AGG | + | chr5.2:12318770-12318789 | MS.gene64712:CDS | 55.0% | |
GTCCCTGATGCTACTGCTGT+TGG | + | chr5.2:12319913-12319932 | MS.gene64712:CDS | 55.0% | |
GTGGGAAGTGGAAGTGGAAG+TGG | + | chr5.2:12318767-12318786 | MS.gene64712:CDS | 55.0% | |
TCACTCACTCTCCCTTCAGC+AGG | + | chr5.2:12319040-12319059 | MS.gene64712:CDS | 55.0% | |
TCCCCAACAGCAGTAGCATC+AGG | - | chr5.2:12319919-12319938 | None:intergenic | 55.0% | |
TGGTACACTCCTTGAAGGGG+TGG | + | chr5.2:12319864-12319883 | MS.gene64712:CDS | 55.0% | |
CTCACGCACCTGAACTCTGC+TGG | - | chr5.2:12319691-12319710 | None:intergenic | 60.0% | |
TGTTGCTGCTGCTGCTGCTG+AGG | - | chr5.2:12318665-12318684 | None:intergenic | 60.0% | |
AGGGCTGAGCCACCCCTTCA+AGG | - | chr5.2:12319876-12319895 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 12318485 | 12320029 | 12318485 | ID=MS.gene64712 |
chr5.2 | mRNA | 12318485 | 12320029 | 12318485 | ID=MS.gene64712.t1;Parent=MS.gene64712 |
chr5.2 | exon | 12318485 | 12319061 | 12318485 | ID=MS.gene64712.t1.exon1;Parent=MS.gene64712.t1 |
chr5.2 | CDS | 12318485 | 12319061 | 12318485 | ID=cds.MS.gene64712.t1;Parent=MS.gene64712.t1 |
chr5.2 | exon | 12319647 | 12320029 | 12319647 | ID=MS.gene64712.t1.exon2;Parent=MS.gene64712.t1 |
chr5.2 | CDS | 12319647 | 12320029 | 12319647 | ID=cds.MS.gene64712.t1;Parent=MS.gene64712.t1 |
Gene Sequence |
Protein sequence |