Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64759.t1 | XP_003612158.1 | 94 | 283 | 15 | 2 | 1 | 283 | 22 | 302 | 1.70E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64759.t1 | Q6YBV1 | 46.0 | 274 | 111 | 8 | 4 | 274 | 35 | 274 | 4.1e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64759.t1 | B7UCW4 | 94.0 | 283 | 15 | 2 | 1 | 283 | 22 | 302 | 1.3e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64759.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64759.t1 | MTR_5g021930 | 96.820 | 283 | 7 | 2 | 1 | 283 | 22 | 302 | 0.0 | 568 |
| MS.gene64759.t1 | MTR_4g084550 | 67.164 | 67 | 21 | 1 | 5 | 71 | 60 | 125 | 9.33e-27 | 103 |
| MS.gene64759.t1 | MTR_8g107210 | 70.769 | 65 | 18 | 1 | 7 | 71 | 94 | 157 | 1.48e-25 | 104 |
| MS.gene64759.t1 | MTR_5g081990 | 59.459 | 74 | 26 | 2 | 9 | 79 | 33 | 105 | 1.95e-24 | 97.4 |
| MS.gene64759.t1 | MTR_7g060630 | 67.692 | 65 | 20 | 1 | 7 | 71 | 6 | 69 | 6.56e-24 | 96.7 |
| MS.gene64759.t1 | MTR_4g063735 | 68.254 | 63 | 19 | 1 | 9 | 71 | 25 | 86 | 1.30e-23 | 97.1 |
| MS.gene64759.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.69e-22 | 93.2 |
| MS.gene64759.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 2.01e-22 | 93.2 |
| MS.gene64759.t1 | MTR_8g095580 | 78.723 | 47 | 10 | 0 | 25 | 71 | 97 | 143 | 2.36e-19 | 83.2 |
| MS.gene64759.t1 | MTR_3g088485 | 76.596 | 47 | 11 | 0 | 25 | 71 | 95 | 141 | 4.19e-19 | 82.4 |
| MS.gene64759.t1 | MTR_7g025010 | 48.438 | 64 | 32 | 1 | 9 | 72 | 47 | 109 | 1.12e-14 | 74.3 |
| MS.gene64759.t1 | MTR_2g015000 | 44.928 | 69 | 37 | 1 | 3 | 71 | 49 | 116 | 4.36e-14 | 72.4 |
| MS.gene64759.t1 | MTR_7g066060 | 87.879 | 33 | 4 | 0 | 54 | 86 | 465 | 497 | 7.80e-13 | 68.6 |
| MS.gene64759.t1 | MTR_4g088070 | 43.548 | 62 | 34 | 1 | 9 | 70 | 29 | 89 | 1.36e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64759.t1 | AT2G17950 | 41.313 | 259 | 104 | 9 | 4 | 236 | 33 | 269 | 2.28e-47 | 160 |
| MS.gene64759.t1 | AT3G18010 | 70.769 | 65 | 18 | 1 | 7 | 71 | 74 | 137 | 1.04e-25 | 104 |
| MS.gene64759.t1 | AT5G59340 | 69.697 | 66 | 19 | 1 | 6 | 71 | 11 | 75 | 1.07e-25 | 102 |
| MS.gene64759.t1 | AT2G28610 | 65.152 | 66 | 22 | 1 | 6 | 71 | 5 | 69 | 2.58e-23 | 95.9 |
| MS.gene64759.t1 | AT3G11260 | 65.079 | 63 | 21 | 1 | 9 | 71 | 24 | 85 | 4.12e-23 | 94.0 |
| MS.gene64759.t1 | AT5G05770 | 62.319 | 69 | 25 | 1 | 9 | 77 | 29 | 96 | 5.23e-23 | 91.7 |
| MS.gene64759.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.36e-22 | 92.8 |
| MS.gene64759.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 8.03e-22 | 92.0 |
| MS.gene64759.t1 | AT2G01500 | 61.017 | 59 | 22 | 1 | 6 | 64 | 58 | 115 | 5.42e-19 | 84.7 |
| MS.gene64759.t1 | AT5G45980 | 52.381 | 63 | 29 | 1 | 9 | 71 | 55 | 116 | 5.59e-15 | 74.3 |
| MS.gene64759.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.11e-14 | 73.9 |
| MS.gene64759.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.14e-14 | 73.9 |
| MS.gene64759.t1 | AT1G20700 | 39.130 | 69 | 41 | 1 | 9 | 77 | 33 | 100 | 7.67e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5.2:+13113583 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5.2:+13113446 | None:intergenic |
| CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 5.2:-13114424 | MS.gene64759:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5.2:+13113263 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5.2:+13113539 | None:intergenic |
| TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5.2:+13113497 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5.2:+13114599 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5.2:-13113473 | MS.gene64759:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5.2:+13114659 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5.2:-13114171 | MS.gene64759:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5.2:-13113377 | MS.gene64759:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5.2:+13113428 | None:intergenic |
| GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 5.2:+13114437 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5.2:-13114177 | MS.gene64759:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5.2:-13114572 | MS.gene64759:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5.2:+13114398 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5.2:-13113289 | MS.gene64759:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5.2:-13114344 | MS.gene64759:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5.2:-13113318 | MS.gene64759:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 5.2:+13114351 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5.2:+13113429 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5.2:-13114502 | MS.gene64759:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5.2:+13114454 | None:intergenic |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5.2:+13114172 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5.2:+13114455 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5.2:-13113296 | MS.gene64759:CDS |
| AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5.2:-13113501 | MS.gene64759:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5.2:-13114186 | MS.gene64759:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5.2:+13113381 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5.2:-13114651 | MS.gene64759:CDS |
| TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5.2:-13114205 | MS.gene64759:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5.2:-13113578 | MS.gene64759:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5.2:-13114632 | MS.gene64759:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5.2:-13114560 | MS.gene64759:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5.2:-13113611 | MS.gene64759:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5.2:-13113632 | MS.gene64759:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5.2:-13113416 | MS.gene64759:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5.2:-13113350 | MS.gene64759:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5.2:-13113583 | MS.gene64759:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5.2:-13113338 | MS.gene64759:CDS |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5.2:+13113420 | None:intergenic |
| AATATGGATCAACATGATGA+TGG | 0.557603 | 5.2:+13113555 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5.2:+13113301 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5.2:+13113419 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5.2:-13114195 | MS.gene64759:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5.2:-13113370 | MS.gene64759:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5.2:-13113374 | MS.gene64759:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5.2:-13113587 | MS.gene64759:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5.2:-13114157 | MS.gene64759:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5.2:-13114586 | MS.gene64759:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5.2:+13113288 | None:intergenic |
| GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5.2:+13113576 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5.2:-13114688 | MS.gene64759:CDS |
| TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5.2:+13113575 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5.2:+13113432 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5.2:+13113433 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5.2:-13113485 | MS.gene64759:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5.2:-13114685 | MS.gene64759:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5.2:-13113413 | MS.gene64759:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5.2:13113889-13113908 | None:intergenic | 10.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5.2:13113890-13113909 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5.2:13114209-13114228 | MS.gene64759:CDS | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5.2:13114025-13114044 | MS.gene64759:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5.2:13114085-13114104 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTGTATCAAAA+AGG | + | chr5.2:13113656-13113675 | None:intergenic | 15.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5.2:13114583-13114602 | MS.gene64759:CDS | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5.2:13113712-13113731 | None:intergenic | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | + | chr5.2:13113612-13113631 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5.2:13114056-13114075 | None:intergenic | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5.2:13113309-13113328 | MS.gene64759:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5.2:13113419-13113438 | MS.gene64759:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | + | chr5.2:13113526-13113545 | None:intergenic | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5.2:13114582-13114601 | None:intergenic | 25.0% |
| AAGACCAAATGAAGAAATCA+TGG | - | chr5.2:13114459-13114478 | MS.gene64759:CDS | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5.2:13113328-13113347 | MS.gene64759:CDS | 30.0% | |
| AATATGGATCAACATGATGA+TGG | + | chr5.2:13114408-13114427 | None:intergenic | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5.2:13113616-13113635 | MS.gene64759:CDS | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5.2:13114475-13114494 | MS.gene64759:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5.2:13113304-13113323 | None:intergenic | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5.2:13114487-13114506 | MS.gene64759:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5.2:13114586-13114605 | MS.gene64759:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+TGG | + | chr5.2:13114466-13114485 | None:intergenic | 30.0% | |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5.2:13114067-13114086 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5.2:13114424-13114443 | None:intergenic | 30.0% | |
| TTTGTGTGTGTGTTTATGTA+GGG | - | chr5.2:13113721-13113740 | MS.gene64759:intron | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5.2:13114043-13114062 | None:intergenic | 30.0% |
| ! | TTTTGTGTGTGTGTTTATGT+AGG | - | chr5.2:13113720-13113739 | MS.gene64759:intron | 30.0% |
| !!! | ATTTTTTTCGTCGTCTTCTT+AGG | - | chr5.2:13114309-13114328 | MS.gene64759:intron | 30.0% |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5.2:13113400-13113419 | MS.gene64759:CDS | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5.2:13113951-13113970 | MS.gene64759:intron | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5.2:13114590-13114609 | MS.gene64759:CDS | 35.0% | |
| CATATCCATAGTTACCAATC+TGG | + | chr5.2:13113791-13113810 | None:intergenic | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5.2:13113458-13113477 | MS.gene64759:CDS | 35.0% | |
| CTATTATTGCTGCTGCTAAT+TGG | - | chr5.2:13113536-13113555 | MS.gene64759:CDS | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5.2:13113986-13114005 | None:intergenic | 35.0% | |
| GCTACATACACATTAGACAA+AGG | + | chr5.2:13113921-13113940 | None:intergenic | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | + | chr5.2:13114154-13114173 | None:intergenic | 35.0% | |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5.2:13113822-13113841 | None:intergenic | 35.0% |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5.2:13113789-13113808 | MS.gene64759:intron | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5.2:13113818-13113837 | MS.gene64759:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5.2:13113821-13113840 | None:intergenic | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5.2:13113817-13113836 | MS.gene64759:intron | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5.2:13113565-13113584 | None:intergenic | 35.0% |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5.2:13113508-13113527 | None:intergenic | 35.0% |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5.2:13114517-13114536 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5.2:13113374-13113393 | MS.gene64759:CDS | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5.2:13114373-13114392 | MS.gene64759:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5.2:13114530-13114549 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5.2:13114544-13114563 | MS.gene64759:CDS | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5.2:13114534-13114553 | None:intergenic | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5.2:13114664-13114683 | MS.gene64759:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5.2:13114622-13114641 | MS.gene64759:CDS | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5.2:13114543-13114562 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5.2:13114535-13114554 | None:intergenic | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5.2:13113388-13113407 | MS.gene64759:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | + | chr5.2:13114151-13114170 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5.2:13114544-13114563 | None:intergenic | 40.0% | |
| TTCATGTTCTTCTGCTGAGA+TGG | - | chr5.2:13113755-13113774 | MS.gene64759:intron | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5.2:13113509-13113528 | None:intergenic | 40.0% |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5.2:13114382-13114401 | MS.gene64759:CDS | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5.2:13114675-13114694 | None:intergenic | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5.2:13114662-13114681 | None:intergenic | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5.2:13113774-13113793 | MS.gene64759:intron | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5.2:13114531-13114550 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5.2:13114547-13114566 | MS.gene64759:CDS | 45.0% | |
| CATGGATGCATGAACCATGA+TGG | + | chr5.2:13113968-13113987 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5.2:13114377-13114396 | MS.gene64759:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5.2:13114380-13114399 | None:intergenic | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5.2:13113364-13113383 | None:intergenic | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5.2:13113275-13113294 | MS.gene64759:CDS | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5.2:13113272-13113291 | MS.gene64759:CDS | 45.0% | |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5.2:13114349-13114368 | MS.gene64759:CDS | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5.2:13113765-13113784 | MS.gene64759:intron | 45.0% | |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5.2:13113803-13113822 | MS.gene64759:intron | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5.2:13114610-13114629 | MS.gene64759:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5.2:13114642-13114661 | MS.gene64759:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5.2:13113783-13113802 | MS.gene64759:intron | 45.0% |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5.2:13114328-13114347 | MS.gene64759:intron | 45.0% |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5.2:13113961-13113980 | None:intergenic | 45.0% |
| !! | AACTTAAATTAAAATTAAAA+TGG | + | chr5.2:13114286-13114305 | None:intergenic | 5.0% |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5.2:13114671-13114690 | MS.gene64759:CDS | 50.0% | |
| GGCCAATCCATCCTAAGTGA+GGG | + | chr5.2:13114387-13114406 | None:intergenic | 50.0% | |
| TGGCCAATCCATCCTAAGTG+AGG | + | chr5.2:13114388-13114407 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 13113268 | 13114714 | 13113268 | ID=MS.gene64759 |
| chr5.2 | mRNA | 13113268 | 13114714 | 13113268 | ID=MS.gene64759.t1;Parent=MS.gene64759 |
| chr5.2 | exon | 13114345 | 13114714 | 13114345 | ID=MS.gene64759.t1.exon1;Parent=MS.gene64759.t1 |
| chr5.2 | CDS | 13114345 | 13114714 | 13114345 | ID=cds.MS.gene64759.t1;Parent=MS.gene64759.t1 |
| chr5.2 | exon | 13114143 | 13114240 | 13114143 | ID=MS.gene64759.t1.exon2;Parent=MS.gene64759.t1 |
| chr5.2 | CDS | 13114143 | 13114240 | 13114143 | ID=cds.MS.gene64759.t1;Parent=MS.gene64759.t1 |
| chr5.2 | exon | 13113268 | 13113651 | 13113268 | ID=MS.gene64759.t1.exon3;Parent=MS.gene64759.t1 |
| chr5.2 | CDS | 13113268 | 13113651 | 13113268 | ID=cds.MS.gene64759.t1;Parent=MS.gene64759.t1 |
| Gene Sequence |
| Protein sequence |